Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76850.t1 | XP_013470032.1 | 98.8 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.00E+00 | 1136.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76850.t1 | Q93ZR1 | 91.3 | 565 | 47 | 1 | 1 | 563 | 1 | 565 | 8.4e-312 | 1070.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76850.t1 | A0A072W1A9 | 98.8 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0e+00 | 1136.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76850.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76850 | MS.gene09543 | PPI |
| MS.gene020313 | MS.gene76850 | PPI |
| MS.gene76850 | MS.gene037409 | PPI |
| MS.gene76850 | MS.gene46303 | PPI |
| MS.gene76850 | MS.gene063067 | PPI |
| MS.gene76850 | MS.gene36633 | PPI |
| MS.gene76850 | MS.gene015206 | PPI |
| MS.gene76850 | MS.gene20245 | PPI |
| MS.gene76850 | MS.gene36746 | PPI |
| MS.gene76850 | MS.gene014181 | PPI |
| MS.gene68113 | MS.gene76850 | PPI |
| MS.gene76850 | MS.gene90863 | PPI |
| MS.gene76850 | MS.gene072220 | PPI |
| MS.gene76850 | MS.gene072221 | PPI |
| MS.gene76850 | MS.gene011065 | PPI |
| MS.gene76850 | MS.gene09540 | PPI |
| MS.gene76850 | MS.gene015202 | PPI |
| MS.gene76850 | MS.gene018762 | PPI |
| MS.gene76850 | MS.gene68716 | PPI |
| MS.gene76850 | MS.gene75146 | PPI |
| MS.gene76850 | MS.gene04820 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76850.t1 | MTR_1g107255 | 98.757 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76850.t1 | AT5G50320 | 91.327 | 565 | 47 | 1 | 1 | 563 | 1 | 565 | 0.0 | 1087 |
Find 176 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGTGAGCTCCATGTTTA+TGG | 0.142211 | 1.1:+76863194 | MS.gene76850:CDS |
| TCAGGTTGAGTTTATATTAA+TGG | 0.195676 | 1.1:+76860505 | MS.gene76850:intron |
| CACTACTTGTCCAGAGCTTA+TGG | 0.210436 | 1.1:+76863157 | MS.gene76850:CDS |
| ACGCCATTACTACAGAAAAT+TGG | 0.214514 | 1.1:+76863611 | MS.gene76850:CDS |
| CGAACAAGTTCCACCTCTTC+TGG | 0.222979 | 1.1:-76862782 | None:intergenic |
| ACTAAGATAGCTGTAATTTC+TGG | 0.226240 | 1.1:+76863579 | MS.gene76850:CDS |
| GACGGGTTTGGCTCGGAGTT+TGG | 0.246198 | 1.1:-76860020 | None:intergenic |
| ATTACCGTGATTACTTTATA+AGG | 0.254776 | 1.1:+76860555 | MS.gene76850:CDS |
| ACTTGTTCGTCGTGATTATA+TGG | 0.272919 | 1.1:+76862796 | MS.gene76850:CDS |
| TGCAATCATCTCAACAAGTT+TGG | 0.275543 | 1.1:-76859963 | None:intergenic |
| CCAATGCCTTTGGTGACCTC+TGG | 0.281758 | 1.1:+76862520 | MS.gene76850:CDS |
| CAGGTTGAGTTTATATTAAT+GGG | 0.294302 | 1.1:+76860506 | MS.gene76850:intron |
| GGGTTATGGTACACTTCTTA+TGG | 0.305200 | 1.1:+76863518 | MS.gene76850:intron |
| CTACCTCTTGTCTGCACATA+AGG | 0.308325 | 1.1:-76860343 | None:intergenic |
| CCACCTCTTCTGGTTTAATC+TGG | 0.319149 | 1.1:-76862772 | None:intergenic |
| ACGGGTTTGGCTCGGAGTTT+GGG | 0.323050 | 1.1:-76860019 | None:intergenic |
| CTTGAGCAGGATATCCTTGT+TGG | 0.326582 | 1.1:+76863104 | MS.gene76850:intron |
| AATTATTGTTAACAGGGTTA+TGG | 0.336285 | 1.1:+76863504 | MS.gene76850:intron |
| TTACTGATTATTATTACATT+AGG | 0.340713 | 1.1:-76863668 | None:intergenic |
| ATTGATCAGCTTAAGCGTTT+AGG | 0.349355 | 1.1:+76860367 | MS.gene76850:CDS |
| AAACCCGTCCGAACCGCATC+TGG | 0.355392 | 1.1:+76860034 | MS.gene76850:CDS |
| CTTTATGAGCTCTGGAAAAC+TGG | 0.356965 | 1.1:+76862270 | MS.gene76850:CDS |
| CAATGCCTTTGGTGACCTCT+GGG | 0.357014 | 1.1:+76862521 | MS.gene76850:CDS |
| ACTCTTGTAATACGTGGAAC+TGG | 0.357820 | 1.1:+76862246 | MS.gene76850:CDS |
| GTTTAAAATGTCGCGATGTT+CGG | 0.368009 | 1.1:+76862596 | MS.gene76850:CDS |
| GGGTTGAGAAAGGGAATCTA+AGG | 0.374003 | 1.1:+76862542 | MS.gene76850:CDS |
| ATTAGGTATTTCATCATGTA+AGG | 0.374054 | 1.1:-76863651 | None:intergenic |
| AGGAGGCCAGATTATTGTCT+TGG | 0.377113 | 1.1:+76861584 | MS.gene76850:intron |
| AATCTTCATGATGCTTTGTC+TGG | 0.377549 | 1.1:+76860578 | MS.gene76850:CDS |
| TACCTGGATTCCAGCTTCTC+TGG | 0.383322 | 1.1:-76862620 | None:intergenic |
| TCTGCTGCGTGCCGTAAGTA+TGG | 0.383722 | 1.1:+76859926 | MS.gene76850:CDS |
| TCCCTTTCAACACCAACATT+TGG | 0.384171 | 1.1:-76862156 | None:intergenic |
| TGGAACTTTCATGTCCCTTC+CGG | 0.386776 | 1.1:+76860529 | MS.gene76850:CDS |
| GGAACTGCTGTACCGGTTCA+TGG | 0.389741 | 1.1:+76863215 | MS.gene76850:CDS |
| AGAACCTCTCGTTCGGAGTC+TGG | 0.399137 | 1.1:-76859992 | None:intergenic |
| CTAAGATAGCTGTAATTTCT+GGG | 0.402023 | 1.1:+76863580 | MS.gene76850:CDS |
| CGCCATTACTACAGAAAATT+GGG | 0.402981 | 1.1:+76863612 | MS.gene76850:CDS |
| CTGAGTACTGTATTCAAAAT+CGG | 0.405571 | 1.1:-76860152 | None:intergenic |
| ATATCCTTGTTGGTTTGTTA+CGG | 0.406404 | 1.1:+76863114 | MS.gene76850:CDS |
| GCGGGATATTCCAATGCCTT+TGG | 0.406417 | 1.1:+76862510 | MS.gene76850:CDS |
| GGCTAAAGATGCCGGTTTCA+AGG | 0.407082 | 1.1:+76861739 | MS.gene76850:CDS |
| GCAATCATCTCAACAAGTTT+GGG | 0.412290 | 1.1:-76859962 | None:intergenic |
| CCTGGGAAAGGAGGCTTTGA+AGG | 0.415150 | 1.1:+76859794 | MS.gene76850:CDS |
| AGATGCGGTTCGGACGGGTT+TGG | 0.419639 | 1.1:-76860032 | None:intergenic |
| GAGCGTTGAGATCAACTTTG+TGG | 0.429078 | 1.1:-76859898 | None:intergenic |
| CAACATCCTCGTAAGTGCTT+TGG | 0.432775 | 1.1:-76861661 | None:intergenic |
| GTGACCTCTGGGGTTGAGAA+AGG | 0.437552 | 1.1:+76862532 | MS.gene76850:CDS |
| GGAGGCCAGATTATTGTCTT+GGG | 0.438031 | 1.1:+76861585 | MS.gene76850:intron |
| TTCTTACGGTTGTACACGAT+TGG | 0.440324 | 1.1:+76861628 | MS.gene76850:CDS |
| ACACCAACATTTGGAAGATC+AGG | 0.441020 | 1.1:-76862147 | None:intergenic |
| ATTATATGGCAAATGAAGGT+TGG | 0.442902 | 1.1:+76862810 | MS.gene76850:CDS |
| TGCTCGAATTGCACGCATAC+TGG | 0.443181 | 1.1:-76860197 | None:intergenic |
| TGCTGTACCGGTTCATGGGC+GGG | 0.453368 | 1.1:+76863220 | MS.gene76850:CDS |
| GGTTGTACACGATTGGAGAT+TGG | 0.457491 | 1.1:+76861635 | MS.gene76850:CDS |
| TCAGAATCCCGCCCATGAAC+CGG | 0.459387 | 1.1:-76863227 | None:intergenic |
| GACACAAATGTTACCGGTGG+TGG | 0.462023 | 1.1:-76860107 | None:intergenic |
| CGGTTCGGACGGGTTTGGCT+CGG | 0.462397 | 1.1:-76860027 | None:intergenic |
| TTCCAAATGTTGGTGTTGAA+AGG | 0.463184 | 1.1:+76862154 | MS.gene76850:CDS |
| GCAGTAGACACAAATGTTAC+CGG | 0.465327 | 1.1:-76860113 | None:intergenic |
| ACTACTTGTCCAGAGCTTAT+GGG | 0.466121 | 1.1:+76863158 | MS.gene76850:CDS |
| TCCAAATGTTGGTGTTGAAA+GGG | 0.466271 | 1.1:+76862155 | MS.gene76850:CDS |
| AAATCGGAGTCAGGACCGCC+AGG | 0.474986 | 1.1:-76860136 | None:intergenic |
| TTATATGGCAAATGAAGGTT+GGG | 0.475457 | 1.1:+76862811 | MS.gene76850:CDS |
| CCAGAGGTCACCAAAGGCAT+TGG | 0.478943 | 1.1:-76862520 | None:intergenic |
| AGTCCCTTGTTTAGAGCAGA+TGG | 0.482729 | 1.1:+76862207 | MS.gene76850:CDS |
| AACATTTGTGTCTACTGCCC+TGG | 0.483658 | 1.1:+76860118 | MS.gene76850:CDS |
| CCTTCAAAGCCTCCTTTCCC+AGG | 0.487403 | 1.1:-76859794 | None:intergenic |
| GAACTGGGCTTTATGAGCTC+TGG | 0.487484 | 1.1:+76862262 | MS.gene76850:CDS |
| CTCTTGTAATACGTGGAACT+GGG | 0.488163 | 1.1:+76862247 | MS.gene76850:CDS |
| GGGAAGAAGAACCTCTCGTT+CGG | 0.489882 | 1.1:-76859999 | None:intergenic |
| CTGTATTCAAAATCGGAGTC+AGG | 0.494942 | 1.1:-76860145 | None:intergenic |
| GGCAACTGCAATGGTGGCAG+AGG | 0.495159 | 1.1:+76859754 | MS.gene76850:CDS |
| TACCTCTTGTCTGCACATAA+GGG | 0.499999 | 1.1:-76860342 | None:intergenic |
| ACAGTAACAAACCTTGAAAC+CGG | 0.500422 | 1.1:-76861750 | None:intergenic |
| TGTTTATGGAACTGCTGTAC+CGG | 0.502199 | 1.1:+76863208 | MS.gene76850:CDS |
| TGAGGCCCAAGACAATAATC+TGG | 0.507785 | 1.1:-76861590 | None:intergenic |
| TATTCCAGATGCGGTTCGGA+CGG | 0.509432 | 1.1:-76860038 | None:intergenic |
| ATAGCTGTAATTTCTGGGGT+TGG | 0.510369 | 1.1:+76863585 | MS.gene76850:CDS |
| CATAGTGCAACCAAGTGTAT+TGG | 0.511814 | 1.1:+76860644 | MS.gene76850:CDS |
| ATTCCAGATGCGGTTCGGAC+GGG | 0.513072 | 1.1:-76860037 | None:intergenic |
| GACCAGAGAAGCTGGAATCC+AGG | 0.513139 | 1.1:+76862618 | MS.gene76850:CDS |
| TGAAACCGGCATCTTTAGCC+AGG | 0.513631 | 1.1:-76861736 | None:intergenic |
| CGGCTATTCCAGATGCGGTT+CGG | 0.514134 | 1.1:-76860042 | None:intergenic |
| GATGTTCGGACCAGAGAAGC+TGG | 0.521187 | 1.1:+76862610 | MS.gene76850:CDS |
| CTGCGACAAATGCTTTCTTA+CGG | 0.521566 | 1.1:+76861614 | MS.gene76850:CDS |
| CACGTGCTTCTTCTTCACTA+AGG | 0.522717 | 1.1:-76859823 | None:intergenic |
| CGTGATTATATGGCAAATGA+AGG | 0.524748 | 1.1:+76862806 | MS.gene76850:CDS |
| GGAGTTAGCATTAGCTCGAA+TGG | 0.524838 | 1.1:+76862564 | MS.gene76850:CDS |
| AATTGTCATGCCAATACACT+TGG | 0.525376 | 1.1:-76860654 | None:intergenic |
| ACTCTATAAACACGCGTCCA+TGG | 0.528985 | 1.1:-76862484 | None:intergenic |
| CGCCTCTTCTACATTGGCAG+AGG | 0.532370 | 1.1:-76860606 | None:intergenic |
| AATTGGGATATGAGCTTGAA+GGG | 0.539350 | 1.1:+76863628 | MS.gene76850:CDS |
| CGTCACCGCCTCTTCTACAT+TGG | 0.539713 | 1.1:-76860612 | None:intergenic |
| TGGTACACTTCTTATGGAGG+AGG | 0.541142 | 1.1:+76863524 | MS.gene76850:CDS |
| AAAGGAGGCTTTGAAGGCCA+CGG | 0.542814 | 1.1:+76859800 | MS.gene76850:CDS |
| ATTAGCTCGAATGGAAGACT+TGG | 0.543470 | 1.1:+76862573 | MS.gene76850:CDS |
| GTCATATGAAGATACACGGC+AGG | 0.543921 | 1.1:+76862844 | MS.gene76850:CDS |
| AACTTTCATGTCCCTTCCGG+CGG | 0.546193 | 1.1:+76860532 | MS.gene76850:CDS |
| GAACTGCTGTACCGGTTCAT+GGG | 0.546285 | 1.1:+76863216 | MS.gene76850:CDS |
| ATGAGCTCTGGAAAACTGGC+AGG | 0.546949 | 1.1:+76862274 | MS.gene76850:CDS |
| GAACACTTACCCATAAGCTC+TGG | 0.547667 | 1.1:-76863167 | None:intergenic |
| AAGCCTCCTTTCCCAGGACG+TGG | 0.547795 | 1.1:-76859788 | None:intergenic |
| ATGATGTCCACAAGTTGCTC+AGG | 0.548538 | 1.1:-76862436 | None:intergenic |
| AAGCCCATCTGCTCTAAACA+AGG | 0.553799 | 1.1:-76862211 | None:intergenic |
| TGACCTCTGGGGTTGAGAAA+GGG | 0.554088 | 1.1:+76862533 | MS.gene76850:CDS |
| CTGCTGTACCGGTTCATGGG+CGG | 0.556681 | 1.1:+76863219 | MS.gene76850:CDS |
| GCTCTGGACAAGTAGTGTTA+CGG | 0.560794 | 1.1:-76863151 | None:intergenic |
| AAGTCACCACGTCCTGGGAA+AGG | 0.561658 | 1.1:+76859782 | MS.gene76850:CDS |
| CACGTGAGAGGCCATACTTA+CGG | 0.562539 | 1.1:-76859937 | None:intergenic |
| ATGGTCGACTTATCTCATAA+AGG | 0.565397 | 1.1:+76859875 | MS.gene76850:CDS |
| CTTCTTCTTCACTAAGGCCG+TGG | 0.565667 | 1.1:-76859817 | None:intergenic |
| AAATTGGGATATGAGCTTGA+AGG | 0.569511 | 1.1:+76863627 | MS.gene76850:CDS |
| ATCGAGAATGGCAACTGCAA+TGG | 0.572062 | 1.1:+76859745 | None:intergenic |
| GCGTGTTTATAGAGTTCAGC+GGG | 0.572842 | 1.1:+76862492 | MS.gene76850:CDS |
| AACCCTTATGTGCAGACAAG+AGG | 0.578250 | 1.1:+76860340 | MS.gene76850:CDS |
| ATGTCCACAAGTTGCTCAGG+TGG | 0.579117 | 1.1:-76862433 | None:intergenic |
| TCCTTGCAATGGTACCTCCA+TGG | 0.582174 | 1.1:+76862467 | MS.gene76850:CDS |
| TTAGCTCGAATGGAAGACTT+GGG | 0.582791 | 1.1:+76862574 | MS.gene76850:CDS |
| CCAGATTAAACCAGAAGAGG+TGG | 0.582970 | 1.1:+76862772 | MS.gene76850:CDS |
| CGTAAGAAAGCATTTGTCGC+AGG | 0.582996 | 1.1:-76861613 | None:intergenic |
| TGTCCTCACATTGCCACCAC+CGG | 0.583615 | 1.1:+76860094 | MS.gene76850:CDS |
| TTATCCACCTGAGCAACTTG+TGG | 0.584183 | 1.1:+76862429 | MS.gene76850:CDS |
| CACCTCTGCCAATGTAGAAG+AGG | 0.586680 | 1.1:+76860604 | MS.gene76850:CDS |
| CGAATTGCACGCATACTGGT+AGG | 0.587485 | 1.1:-76860193 | None:intergenic |
| GTTGAGTTTATATTAATGGG+TGG | 0.587623 | 1.1:+76860509 | MS.gene76850:CDS |
| GTCCCTTGTTTAGAGCAGAT+GGG | 0.588499 | 1.1:+76862208 | MS.gene76850:CDS |
| GTTGCTCGTGACACTAATAG+AGG | 0.589637 | 1.1:+76861680 | MS.gene76850:CDS |
| TGCAGAGATTGTAAACTCCA+TGG | 0.589639 | 1.1:+76859856 | MS.gene76850:CDS |
| TTCTGACAAGCTACAACACC+AGG | 0.589825 | 1.1:+76863244 | MS.gene76850:CDS |
| CAAGTTTGGGTGCACGTGAG+AGG | 0.590702 | 1.1:-76859949 | None:intergenic |
| GGAGTTTACAATCTCTGCAA+TGG | 0.592885 | 1.1:-76859852 | None:intergenic |
| ATGCCTGATCTTCCAAATGT+TGG | 0.593013 | 1.1:+76862144 | MS.gene76850:CDS |
| TACCCCACTCTTGTAATACG+TGG | 0.597220 | 1.1:+76862240 | MS.gene76850:CDS |
| AAGTAATCACGGTAATCCGC+CGG | 0.605266 | 1.1:-76860548 | None:intergenic |
| TCACCAGATTAAACCAGAAG+AGG | 0.607594 | 1.1:+76862769 | MS.gene76850:CDS |
| GAAAGCATTTGTCGCAGGTG+AGG | 0.608219 | 1.1:-76861608 | None:intergenic |
| GTTCCACGTATTACAAGAGT+GGG | 0.609518 | 1.1:-76862243 | None:intergenic |
| GAGAATGGCAACTGCAATGG+TGG | 0.611617 | 1.1:+76859748 | None:intergenic |
| CTCTGCCAATGTAGAAGAGG+CGG | 0.613175 | 1.1:+76860607 | MS.gene76850:CDS |
| TCACCACGTCCTGGGAAAGG+AGG | 0.613203 | 1.1:+76859785 | MS.gene76850:CDS |
| TCCATGGAGGTACCATTGCA+AGG | 0.615787 | 1.1:-76862468 | None:intergenic |
| TTGTTACGGCTGCGAAAATG+TGG | 0.617345 | 1.1:+76863128 | MS.gene76850:CDS |
| AGTTCCACGTATTACAAGAG+TGG | 0.617723 | 1.1:-76862244 | None:intergenic |
| GATTCCTTATAAAGTAATCA+CGG | 0.618997 | 1.1:-76860559 | None:intergenic |
| ATCACGGTAATCCGCCGGAA+GGG | 0.620461 | 1.1:-76860543 | None:intergenic |
| TTTAGGTCACAGTGTAGACA+AGG | 0.621502 | 1.1:+76860384 | MS.gene76850:CDS |
| TACAGTACTCAGTCTTACAC+TGG | 0.624637 | 1.1:+76860163 | MS.gene76850:CDS |
| TTATGGTACACTTCTTATGG+AGG | 0.625503 | 1.1:+76863521 | MS.gene76850:CDS |
| AATCACGGTAATCCGCCGGA+AGG | 0.629594 | 1.1:-76860544 | None:intergenic |
| CTTTGACATGACAGCAACAA+CGG | 0.631924 | 1.1:-76860062 | None:intergenic |
| GTACAGCAGTTCCATAAACA+TGG | 0.632941 | 1.1:-76863205 | None:intergenic |
| AATGCCTTTGGTGACCTCTG+GGG | 0.633442 | 1.1:+76862522 | MS.gene76850:CDS |
| CTTATGTGCAGACAAGAGGT+AGG | 0.635365 | 1.1:+76860344 | MS.gene76850:CDS |
| TAAGATAGCTGTAATTTCTG+GGG | 0.637498 | 1.1:+76863581 | MS.gene76850:CDS |
| TTTACCAGACTCCGAACGAG+AGG | 0.637913 | 1.1:+76859988 | MS.gene76850:CDS |
| AGCCCATCTGCTCTAAACAA+GGG | 0.651856 | 1.1:-76862210 | None:intergenic |
| ATTTGTGTCTACTGCCCTGG+CGG | 0.653081 | 1.1:+76860121 | MS.gene76850:CDS |
| AATCGGAGTCAGGACCGCCA+GGG | 0.654250 | 1.1:-76860135 | None:intergenic |
| CATAGCAAGGATCCTTGCAA+TGG | 0.656475 | 1.1:+76862456 | MS.gene76850:CDS |
| GTATGCGTGCAATTCGAGCA+AGG | 0.657253 | 1.1:+76860200 | MS.gene76850:CDS |
| AACTTGTGGACATCATAGCA+AGG | 0.660784 | 1.1:+76862443 | MS.gene76850:CDS |
| TGTTGGTGTTGAAAGGGACA+TGG | 0.661690 | 1.1:+76862161 | MS.gene76850:CDS |
| TTACCGGTGGTGGCAATGTG+AGG | 0.666723 | 1.1:-76860097 | None:intergenic |
| TCAACCCCAGAGGTCACCAA+AGG | 0.669888 | 1.1:-76862526 | None:intergenic |
| TTTATGAGATAAGTCGACCA+TGG | 0.671183 | 1.1:-76859873 | None:intergenic |
| TTCTTATGGAGGAGGCTGAG+CGG | 0.672319 | 1.1:+76863532 | MS.gene76850:CDS |
| TGGAGTCCAAAGCACTTACG+AGG | 0.676860 | 1.1:+76861655 | MS.gene76850:CDS |
| AACAACGGCTATTCCAGATG+CGG | 0.680136 | 1.1:-76860047 | None:intergenic |
| GGTTGAGAAAGGGAATCTAA+GGG | 0.683574 | 1.1:+76862543 | MS.gene76850:CDS |
| ATTCCCTTTCTCAACCCCAG+AGG | 0.690536 | 1.1:-76862536 | None:intergenic |
| GCAATGTGAGGACAACGATG+AGG | 0.702850 | 1.1:-76860085 | None:intergenic |
| CGCGTGTTTATAGAGTTCAG+CGG | 0.704736 | 1.1:+76862491 | MS.gene76850:CDS |
| GTAGACACAAATGTTACCGG+TGG | 0.711036 | 1.1:-76860110 | None:intergenic |
| CTATAAACACGCGTCCATGG+AGG | 0.720117 | 1.1:-76862481 | None:intergenic |
| GCAGCCGTAACAAACCAACA+AGG | 0.750250 | 1.1:-76863118 | None:intergenic |
| TTCCACGTATTACAAGAGTG+GGG | 0.762155 | 1.1:-76862242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTTTTAAAAAAAAC+TGG | - | chr1.1:76860930-76860949 | None:intergenic | 10.0% |
| !! | TATCATGTAGTTATATTAAT+GGG | + | chr1.1:76860466-76860485 | MS.gene76850:intron | 15.0% |
| !!! | AAAAAAAACTGGATTTTTAT+GGG | - | chr1.1:76860919-76860938 | None:intergenic | 15.0% |
| !!! | CACAAAATCTATTTTTTTTA+AGG | - | chr1.1:76860824-76860843 | None:intergenic | 15.0% |
| !!! | TAAAAAAAACTGGATTTTTA+TGG | - | chr1.1:76860920-76860939 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTTTCAAAAACA+AGG | - | chr1.1:76860983-76861002 | None:intergenic | 15.0% |
| !!! | TTTGTTTACTAGTATTATTT+TGG | + | chr1.1:76862706-76862725 | MS.gene76850:intron | 15.0% |
| !!! | TTTTATGTGTTTTTTTTCTT+TGG | + | chr1.1:76862094-76862113 | MS.gene76850:intron | 15.0% |
| !! | ATTAATAAGCAACTTTCTAT+AGG | + | chr1.1:76861966-76861985 | MS.gene76850:intron | 20.0% |
| !! | GTATCATGTAGTTATATTAA+TGG | + | chr1.1:76860465-76860484 | MS.gene76850:intron | 20.0% |
| !! | TCAACTTGCAAATAATTAAA+TGG | - | chr1.1:76860697-76860716 | None:intergenic | 20.0% |
| !!! | ATGTGTTCTATTTTACTTAA+AGG | - | chr1.1:76860283-76860302 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCAAAAACAAGG+AGG | - | chr1.1:76860980-76860999 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATCTGAAACAAA+CGG | + | chr1.1:76861123-76861142 | MS.gene76850:intron | 20.0% |
| !!! | TTGTTTGTTAACATCATTTT+AGG | + | chr1.1:76862398-76862417 | MS.gene76850:intron | 20.0% |
| ! | AACTAAACCAGTTTATATCA+TGG | - | chr1.1:76861419-76861438 | None:intergenic | 25.0% |
| ! | AATATCCAAGAAGATACATA+TGG | + | chr1.1:76863400-76863419 | MS.gene76850:intron | 25.0% |
| ! | AATATCCATATGTATCTTCT+TGG | - | chr1.1:76863408-76863427 | None:intergenic | 25.0% |
| ! | AATTATTGTTAACAGGGTTA+TGG | + | chr1.1:76863504-76863523 | MS.gene76850:intron | 25.0% |
| ! | AGAAAATGATGATAGACAAA+AGG | - | chr1.1:76862912-76862931 | None:intergenic | 25.0% |
| ! | ATCTTCTTGGATATTATACA+TGG | - | chr1.1:76863395-76863414 | None:intergenic | 25.0% |
| ! | ATTAAATTTCAAGACGAGAT+TGG | - | chr1.1:76862657-76862676 | None:intergenic | 25.0% |
| ! | ATTACCGTGATTACTTTATA+AGG | + | chr1.1:76860555-76860574 | MS.gene76850:CDS | 25.0% |
| ! | ATTAGGTATTTCATCATGTA+AGG | - | chr1.1:76863654-76863673 | None:intergenic | 25.0% |
| ! | CAACAACAAATTTACACTAA+AGG | - | chr1.1:76863044-76863063 | None:intergenic | 25.0% |
| ! | CATATCAATGATTATATTCG+TGG | + | chr1.1:76861475-76861494 | MS.gene76850:intron | 25.0% |
| ! | CATTATTCATCAGGTTTAAA+AGG | + | chr1.1:76862359-76862378 | MS.gene76850:intron | 25.0% |
| ! | GAATAATGAGATAGAAACTA+AGG | - | chr1.1:76862347-76862366 | None:intergenic | 25.0% |
| ! | GAATATTCACATGTTCTTAT+TGG | + | chr1.1:76863311-76863330 | MS.gene76850:intron | 25.0% |
| ! | GACCAAAATTATTGTTAACA+GGG | + | chr1.1:76863498-76863517 | MS.gene76850:intron | 25.0% |
| ! | GATTCCTTATAAAGTAATCA+CGG | - | chr1.1:76860562-76860581 | None:intergenic | 25.0% |
| ! | TCATTATATTTGTCTAGACA+AGG | + | chr1.1:76861913-76861932 | MS.gene76850:intron | 25.0% |
| ! | TGACCAAAATTATTGTTAAC+AGG | + | chr1.1:76863497-76863516 | MS.gene76850:intron | 25.0% |
| ! | TGTGTTACATTAACTATTAC+CGG | - | chr1.1:76861522-76861541 | None:intergenic | 25.0% |
| ! | TTTCTATCTCATTATTCATC+AGG | + | chr1.1:76862350-76862369 | MS.gene76850:intron | 25.0% |
| !! | AAAAAAATCTGAAACAAACG+GGG | + | chr1.1:76861125-76861144 | MS.gene76850:intron | 25.0% |
| !! | AACCCTGTTAACAATAATTT+TGG | - | chr1.1:76863503-76863522 | None:intergenic | 25.0% |
| !! | CAGGTTGAGTTTATATTAAT+GGG | + | chr1.1:76860506-76860525 | MS.gene76850:intron | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | + | chr1.1:76861020-76861039 | MS.gene76850:intron | 25.0% |
| !! | GAAAAAAATCTGAAACAAAC+GGG | + | chr1.1:76861124-76861143 | MS.gene76850:intron | 25.0% |
| !! | GGTTTAGTTATGATTTTCTA+GGG | + | chr1.1:76861430-76861449 | MS.gene76850:intron | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | + | chr1.1:76861019-76861038 | MS.gene76850:intron | 25.0% |
| !! | TGGTTTAGTTATGATTTTCT+AGG | + | chr1.1:76861429-76861448 | MS.gene76850:intron | 25.0% |
| !! | TTTTAAACACATTCAGCATA+AGG | - | chr1.1:76861831-76861850 | None:intergenic | 25.0% |
| !! | TTTTGTCATATGAAGATACA+CGG | + | chr1.1:76862840-76862859 | MS.gene76850:CDS | 25.0% |
| !!! | CAAGCTTTAAATAGATTCAT+TGG | + | chr1.1:76861937-76861956 | MS.gene76850:intron | 25.0% |
| !!! | CATATTACTTTCTAGTTGTT+TGG | + | chr1.1:76861989-76862008 | MS.gene76850:intron | 25.0% |
| !!! | CCTTCTTTATTTTGAATGAA+GGG | + | chr1.1:76862996-76863015 | MS.gene76850:intron | 25.0% |
| !!! | CTTCTTTATTTTGAATGAAG+GGG | + | chr1.1:76862997-76863016 | MS.gene76850:intron | 25.0% |
| !!! | TAACAATAATTTTGGTCAGT+AGG | - | chr1.1:76863495-76863514 | None:intergenic | 25.0% |
| !!! | TCAGGTTGAGTTTATATTAA+TGG | + | chr1.1:76860505-76860524 | MS.gene76850:intron | 25.0% |
| AAGAAATACAGAATGTCTGT+TGG | - | chr1.1:76862736-76862755 | None:intergenic | 30.0% | |
| AAGAACACATCACATTAGAT+AGG | - | chr1.1:76862302-76862321 | None:intergenic | 30.0% | |
| ACCAAGAAAAACTACAAATC+AGG | + | chr1.1:76861211-76861230 | MS.gene76850:intron | 30.0% | |
| ACCTTTGAGTAAACTTTAAC+CGG | + | chr1.1:76861500-76861519 | MS.gene76850:intron | 30.0% | |
| ACTAAGATAGCTGTAATTTC+TGG | + | chr1.1:76863579-76863598 | MS.gene76850:CDS | 30.0% | |
| ATATAGGAGAATAGTTTGAC+AGG | - | chr1.1:76861805-76861824 | None:intergenic | 30.0% | |
| ATGATGATAGACAAAAGGAT+AGG | - | chr1.1:76862907-76862926 | None:intergenic | 30.0% | |
| ATTATATGGCAAATGAAGGT+TGG | + | chr1.1:76862810-76862829 | MS.gene76850:CDS | 30.0% | |
| CCCTAAAATGAAAAGCTATT+AGG | - | chr1.1:76861023-76861042 | None:intergenic | 30.0% | |
| CCCTTCATTCAAAATAAAGA+AGG | - | chr1.1:76862999-76863018 | None:intergenic | 30.0% | |
| CTAAGATAGCTGTAATTTCT+GGG | + | chr1.1:76863580-76863599 | MS.gene76850:CDS | 30.0% | |
| CTTGCAAATAATTAAATGGC+AGG | - | chr1.1:76860693-76860712 | None:intergenic | 30.0% | |
| GACATTCTGTATTTCTTTGT+AGG | + | chr1.1:76862739-76862758 | MS.gene76850:intron | 30.0% | |
| GTTGAGTTTATATTAATGGG+TGG | + | chr1.1:76860509-76860528 | MS.gene76850:CDS | 30.0% | |
| TAAACCAGTTTATATCATGG+CGG | - | chr1.1:76861416-76861435 | None:intergenic | 30.0% | |
| TAAGATAGCTGTAATTTCTG+GGG | + | chr1.1:76863581-76863600 | MS.gene76850:CDS | 30.0% | |
| TACAAATCAGGCTATTAAGA+TGG | + | chr1.1:76861223-76861242 | MS.gene76850:intron | 30.0% | |
| TACAATGAGGAACATGTTAT+TGG | - | chr1.1:76863462-76863481 | None:intergenic | 30.0% | |
| TTATATGGCAAATGAAGGTT+GGG | + | chr1.1:76862811-76862830 | MS.gene76850:CDS | 30.0% | |
| TTGCACTTCTTAAATTTCTC+AGG | + | chr1.1:76861564-76861583 | MS.gene76850:intron | 30.0% | |
| TTTACACTAAAGGTAAGAAC+AGG | - | chr1.1:76863034-76863053 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTGCTTTGGATTT+AGG | + | chr1.1:76860314-76860333 | MS.gene76850:intron | 30.0% |
| ! | ATCCCAATTTTCTGTAGTAA+TGG | - | chr1.1:76863617-76863636 | None:intergenic | 30.0% |
| ! | ATTTGAAAGGGGTACAATTA+GGG | - | chr1.1:76862019-76862038 | None:intergenic | 30.0% |
| ! | CTGAGTACTGTATTCAAAAT+CGG | - | chr1.1:76860155-76860174 | None:intergenic | 30.0% |
| ! | TATTTGAAAGGGGTACAATT+AGG | - | chr1.1:76862020-76862039 | None:intergenic | 30.0% |
| ! | TGCCTAGTTTGTATTTGAAA+GGG | - | chr1.1:76862031-76862050 | None:intergenic | 30.0% |
| ! | TGTAGTTATATTAATGGGTG+TGG | + | chr1.1:76860471-76860490 | MS.gene76850:intron | 30.0% |
| ! | TTGTTGTTGTTGATGAAACA+TGG | + | chr1.1:76863055-76863074 | MS.gene76850:intron | 30.0% |
| !! | ATATCCTTGTTGGTTTGTTA+CGG | + | chr1.1:76863114-76863133 | MS.gene76850:CDS | 30.0% |
| !! | ATTGGTTCTAGATAATTACC+TGG | - | chr1.1:76862639-76862658 | None:intergenic | 30.0% |
| !! | TATAGGGAGAATGGATTATA+TGG | + | chr1.1:76861157-76861176 | MS.gene76850:intron | 30.0% |
| !!! | CTTTTGCGTAAAGTTTTGAA+TGG | + | chr1.1:76860726-76860745 | MS.gene76850:intron | 30.0% |
| !!! | GCCTTCTTTATTTTGAATGA+AGG | + | chr1.1:76862995-76863014 | MS.gene76850:intron | 30.0% |
| !!! | TTTTCTTTGGCTTTTGCTTT+AGG | + | chr1.1:76862107-76862126 | MS.gene76850:intron | 30.0% |
| AAATTGGGATATGAGCTTGA+AGG | + | chr1.1:76863627-76863646 | MS.gene76850:CDS | 35.0% | |
| AATCTTCATGATGCTTTGTC+TGG | + | chr1.1:76860578-76860597 | MS.gene76850:CDS | 35.0% | |
| AATTGGGATATGAGCTTGAA+GGG | + | chr1.1:76863628-76863647 | MS.gene76850:CDS | 35.0% | |
| AATTGTCATGCCAATACACT+TGG | - | chr1.1:76860657-76860676 | None:intergenic | 35.0% | |
| ACAGTAACAAACCTTGAAAC+CGG | - | chr1.1:76861753-76861772 | None:intergenic | 35.0% | |
| ACCCCTTTCAAATACAAACT+AGG | + | chr1.1:76862026-76862045 | MS.gene76850:intron | 35.0% | |
| ACCGGTTAAAGTTTACTCAA+AGG | - | chr1.1:76861504-76861523 | None:intergenic | 35.0% | |
| ACGCCATTACTACAGAAAAT+TGG | + | chr1.1:76863611-76863630 | MS.gene76850:CDS | 35.0% | |
| ACTTGTTCGTCGTGATTATA+TGG | + | chr1.1:76862796-76862815 | MS.gene76850:CDS | 35.0% | |
| AGGGACTTTCAAAAAACTCT+CGG | - | chr1.1:76862194-76862213 | None:intergenic | 35.0% | |
| ATTGATCAGCTTAAGCGTTT+AGG | + | chr1.1:76860367-76860386 | MS.gene76850:CDS | 35.0% | |
| CACTTCTTAAATTTCTCAGG+AGG | + | chr1.1:76861567-76861586 | MS.gene76850:intron | 35.0% | |
| CCATTCTCCCTATAAGATTT+AGG | - | chr1.1:76861151-76861170 | None:intergenic | 35.0% | |
| CCTAAATCTTATAGGGAGAA+TGG | + | chr1.1:76861148-76861167 | MS.gene76850:intron | 35.0% | |
| CGCCATTACTACAGAAAATT+GGG | + | chr1.1:76863612-76863631 | MS.gene76850:CDS | 35.0% | |
| CGTGATTATATGGCAAATGA+AGG | + | chr1.1:76862806-76862825 | MS.gene76850:CDS | 35.0% | |
| GAACATGTTATTGGTATCCT+TGG | - | chr1.1:76863453-76863472 | None:intergenic | 35.0% | |
| GAAGTGCAAAACTTGATAAG+CGG | - | chr1.1:76861553-76861572 | None:intergenic | 35.0% | |
| GCAATCATCTCAACAAGTTT+GGG | - | chr1.1:76859965-76859984 | None:intergenic | 35.0% | |
| TCAAATACAAACTAGGCAGT+AGG | + | chr1.1:76862033-76862052 | MS.gene76850:intron | 35.0% | |
| TGATTCACAAGAAGACATTG+CGG | + | chr1.1:76861276-76861295 | MS.gene76850:intron | 35.0% | |
| TGCAATCATCTCAACAAGTT+TGG | - | chr1.1:76859966-76859985 | None:intergenic | 35.0% | |
| TTATGGTACACTTCTTATGG+AGG | + | chr1.1:76863521-76863540 | MS.gene76850:CDS | 35.0% | |
| TTCATTACAACTTTGAGTGC+AGG | - | chr1.1:76861871-76861890 | None:intergenic | 35.0% | |
| TTTATGAGATAAGTCGACCA+TGG | - | chr1.1:76859876-76859895 | None:intergenic | 35.0% | |
| ! | ACTGGATTTTTATGGGTAGT+AGG | - | chr1.1:76860912-76860931 | None:intergenic | 35.0% |
| ! | ATGGTCGACTTATCTCATAA+AGG | + | chr1.1:76859875-76859894 | MS.gene76850:CDS | 35.0% |
| ! | ATTAGCATGACAGTTTTACC+TGG | - | chr1.1:76863265-76863284 | None:intergenic | 35.0% |
| ! | ATTCAGCATAAGGAGCATAT+AGG | - | chr1.1:76861821-76861840 | None:intergenic | 35.0% |
| ! | CTGCCTAGTTTGTATTTGAA+AGG | - | chr1.1:76862032-76862051 | None:intergenic | 35.0% |
| ! | GCCTAGTTTGTATTTGAAAG+GGG | - | chr1.1:76862030-76862049 | None:intergenic | 35.0% |
| ! | GTTTAAAATGTCGCGATGTT+CGG | + | chr1.1:76862596-76862615 | MS.gene76850:CDS | 35.0% |
| ! | TGAGTGTAATTGCTGAGTTT+TGG | + | chr1.1:76863342-76863361 | MS.gene76850:intron | 35.0% |
| ! | TTCGATGACTTTGTTTGCTT+TGG | + | chr1.1:76860307-76860326 | MS.gene76850:intron | 35.0% |
| !! | CAGGCTATTAAGATGGATTT+TGG | + | chr1.1:76861230-76861249 | MS.gene76850:intron | 35.0% |
| !! | GCCTGATTTGTAGTTTTTCT+TGG | - | chr1.1:76861215-76861234 | None:intergenic | 35.0% |
| !! | GGTGTGGTTTATTGTTTTTC+AGG | + | chr1.1:76860487-76860506 | MS.gene76850:intron | 35.0% |
| !! | TCCAAATGTTGGTGTTGAAA+GGG | + | chr1.1:76862155-76862174 | MS.gene76850:CDS | 35.0% |
| !! | TTCCAAATGTTGGTGTTGAA+AGG | + | chr1.1:76862154-76862173 | MS.gene76850:CDS | 35.0% |
| !!! | TTGCGTAAAGTTTTGAATGG+AGG | + | chr1.1:76860729-76860748 | MS.gene76850:intron | 35.0% |
| AAACGGGGCCTAAATCTTAT+AGG | + | chr1.1:76861140-76861159 | MS.gene76850:intron | 40.0% | |
| AACGGGGCCTAAATCTTATA+GGG | + | chr1.1:76861141-76861160 | MS.gene76850:intron | 40.0% | |
| AACTTGTGGACATCATAGCA+AGG | + | chr1.1:76862443-76862462 | MS.gene76850:CDS | 40.0% | |
| ACACCAACATTTGGAAGATC+AGG | - | chr1.1:76862150-76862169 | None:intergenic | 40.0% | |
| ACTACTTGTCCAGAGCTTAT+GGG | + | chr1.1:76863158-76863177 | MS.gene76850:CDS | 40.0% | |
| ACTCTTGTAATACGTGGAAC+TGG | + | chr1.1:76862246-76862265 | MS.gene76850:CDS | 40.0% | |
| AGGATAGGCACTAATAAGAG+AGG | - | chr1.1:76862892-76862911 | None:intergenic | 40.0% | |
| AGTTCCACGTATTACAAGAG+TGG | - | chr1.1:76862247-76862266 | None:intergenic | 40.0% | |
| ATACAAACTAGGCAGTAGGT+TGG | + | chr1.1:76862037-76862056 | MS.gene76850:intron | 40.0% | |
| ATGAAACATGGCCATGACAT+TGG | + | chr1.1:76863067-76863086 | MS.gene76850:intron | 40.0% | |
| ATGCCTGATCTTCCAAATGT+TGG | + | chr1.1:76862144-76862163 | MS.gene76850:CDS | 40.0% | |
| ATTAGCTCGAATGGAAGACT+TGG | + | chr1.1:76862573-76862592 | MS.gene76850:CDS | 40.0% | |
| CATAGTGCAACCAAGTGTAT+TGG | + | chr1.1:76860644-76860663 | MS.gene76850:CDS | 40.0% | |
| CTCTTGTAATACGTGGAACT+GGG | + | chr1.1:76862247-76862266 | MS.gene76850:CDS | 40.0% | |
| CTGCGACAAATGCTTTCTTA+CGG | + | chr1.1:76861614-76861633 | MS.gene76850:CDS | 40.0% | |
| CTGTATTCAAAATCGGAGTC+AGG | - | chr1.1:76860148-76860167 | None:intergenic | 40.0% | |
| CTTTGACATGACAGCAACAA+CGG | - | chr1.1:76860065-76860084 | None:intergenic | 40.0% | |
| GAAGGCAAAATATGCACAAC+AGG | - | chr1.1:76862981-76863000 | None:intergenic | 40.0% | |
| GCAGTAGACACAAATGTTAC+CGG | - | chr1.1:76860116-76860135 | None:intergenic | 40.0% | |
| GGAGTTTACAATCTCTGCAA+TGG | - | chr1.1:76859855-76859874 | None:intergenic | 40.0% | |
| GGGTTATGGTACACTTCTTA+TGG | + | chr1.1:76863518-76863537 | MS.gene76850:intron | 40.0% | |
| GGTTGAGAAAGGGAATCTAA+GGG | + | chr1.1:76862543-76862562 | MS.gene76850:CDS | 40.0% | |
| GTACAGCAGTTCCATAAACA+TGG | - | chr1.1:76863208-76863227 | None:intergenic | 40.0% | |
| GTTCCACGTATTACAAGAGT+GGG | - | chr1.1:76862246-76862265 | None:intergenic | 40.0% | |
| TACAGTACTCAGTCTTACAC+TGG | + | chr1.1:76860163-76860182 | MS.gene76850:CDS | 40.0% | |
| TACCTCTTGTCTGCACATAA+GGG | - | chr1.1:76860345-76860364 | None:intergenic | 40.0% | |
| TCACCAGATTAAACCAGAAG+AGG | + | chr1.1:76862769-76862788 | MS.gene76850:CDS | 40.0% | |
| TCCCTTTCAACACCAACATT+TGG | - | chr1.1:76862159-76862178 | None:intergenic | 40.0% | |
| TGCAGAGATTGTAAACTCCA+TGG | + | chr1.1:76859856-76859875 | MS.gene76850:CDS | 40.0% | |
| TGTTTATGGAACTGCTGTAC+CGG | + | chr1.1:76863208-76863227 | MS.gene76850:CDS | 40.0% | |
| TTAGCTCGAATGGAAGACTT+GGG | + | chr1.1:76862574-76862593 | MS.gene76850:CDS | 40.0% | |
| TTCCACGTATTACAAGAGTG+GGG | - | chr1.1:76862245-76862264 | None:intergenic | 40.0% | |
| TTCTTACGGTTGTACACGAT+TGG | + | chr1.1:76861628-76861647 | MS.gene76850:CDS | 40.0% | |
| TTTAGGTCACAGTGTAGACA+AGG | + | chr1.1:76860384-76860403 | MS.gene76850:CDS | 40.0% | |
| ! | ATCACAATGCAGCTTTTCCA+AGG | + | chr1.1:76863433-76863452 | MS.gene76850:intron | 40.0% |
| ! | CATCAGGTTTAAAAGGCATG+TGG | + | chr1.1:76862366-76862385 | MS.gene76850:intron | 40.0% |
| !! | AGGGAGAATGGATTATATGG+AGG | + | chr1.1:76861160-76861179 | MS.gene76850:intron | 40.0% |
| !! | ATAGCTGTAATTTCTGGGGT+TGG | + | chr1.1:76863585-76863604 | MS.gene76850:CDS | 40.0% |
| !! | ATTTTGGTCAGTAGGTCAAC+TGG | - | chr1.1:76863487-76863506 | None:intergenic | 40.0% |
| !! | CTTTATGAGCTCTGGAAAAC+TGG | + | chr1.1:76862270-76862289 | MS.gene76850:CDS | 40.0% |
| !!! | GCTTTGGACTTTTTGGTGTT+TGG | + | chr1.1:76860755-76860774 | MS.gene76850:intron | 40.0% |
| !!! | TGTAGCTGATTGTTTTTGCC+TGG | + | chr1.1:76861718-76861737 | MS.gene76850:CDS | 40.0% |
| !!! | TTTTGAATGGAGGAGTGCTT+TGG | + | chr1.1:76860739-76860758 | MS.gene76850:intron | 40.0% |
| !!! | TTTTTGGTGTTTGGACACGT+GGG | + | chr1.1:76860764-76860783 | MS.gene76850:intron | 40.0% |
| AACAACGGCTATTCCAGATG+CGG | - | chr1.1:76860050-76860069 | None:intergenic | 45.0% | |
| AACATTTGTGTCTACTGCCC+TGG | + | chr1.1:76860118-76860137 | MS.gene76850:CDS | 45.0% | |
| AACCCTTATGTGCAGACAAG+AGG | + | chr1.1:76860340-76860359 | MS.gene76850:CDS | 45.0% | |
| AAGTAATCACGGTAATCCGC+CGG | - | chr1.1:76860551-76860570 | None:intergenic | 45.0% | |
| ACTCTATAAACACGCGTCCA+TGG | - | chr1.1:76862487-76862506 | None:intergenic | 45.0% | |
| ACTGCCGCCATGATATAAAC+TGG | + | chr1.1:76861409-76861428 | MS.gene76850:intron | 45.0% | |
| AGACAGCACAACCAATGTCA+TGG | - | chr1.1:76863081-76863100 | None:intergenic | 45.0% | |
| AGGAGGCCAGATTATTGTCT+TGG | + | chr1.1:76861584-76861603 | MS.gene76850:intron | 45.0% | |
| AGGTCAACTGGAGTACAATG+AGG | - | chr1.1:76863475-76863494 | None:intergenic | 45.0% | |
| ATGATGTCCACAAGTTGCTC+AGG | - | chr1.1:76862439-76862458 | None:intergenic | 45.0% | |
| CAAAAAAGTCACCACGTCCT+GGG | + | chr1.1:76859777-76859796 | MS.gene76850:CDS | 45.0% | |
| CAACATCCTCGTAAGTGCTT+TGG | - | chr1.1:76861664-76861683 | None:intergenic | 45.0% | |
| CACGTGCTTCTTCTTCACTA+AGG | - | chr1.1:76859826-76859845 | None:intergenic | 45.0% | |
| CACTACTTGTCCAGAGCTTA+TGG | + | chr1.1:76863157-76863176 | MS.gene76850:CDS | 45.0% | |
| CATAGCAAGGATCCTTGCAA+TGG | + | chr1.1:76862456-76862475 | MS.gene76850:CDS | 45.0% | |
| CCAGATTAAACCAGAAGAGG+TGG | + | chr1.1:76862772-76862791 | MS.gene76850:CDS | 45.0% | |
| CGCGTGTTTATAGAGTTCAG+CGG | + | chr1.1:76862491-76862510 | MS.gene76850:CDS | 45.0% | |
| CTACCTCTTGTCTGCACATA+AGG | - | chr1.1:76860346-76860365 | None:intergenic | 45.0% | |
| CTTATGTGCAGACAAGAGGT+AGG | + | chr1.1:76860344-76860363 | MS.gene76850:CDS | 45.0% | |
| CTTGAGCAGGATATCCTTGT+TGG | + | chr1.1:76863104-76863123 | MS.gene76850:intron | 45.0% | |
| GAACACTTACCCATAAGCTC+TGG | - | chr1.1:76863170-76863189 | None:intergenic | 45.0% | |
| GCGTGTTTATAGAGTTCAGC+GGG | + | chr1.1:76862492-76862511 | MS.gene76850:CDS | 45.0% | |
| GGAGGCCAGATTATTGTCTT+GGG | + | chr1.1:76861585-76861604 | MS.gene76850:intron | 45.0% | |
| GGAGTTAGCATTAGCTCGAA+TGG | + | chr1.1:76862564-76862583 | MS.gene76850:CDS | 45.0% | |
| GGGGAGAAGACTTGTAGTAA+GGG | + | chr1.1:76860784-76860803 | MS.gene76850:intron | 45.0% | |
| GGGTTGAGAAAGGGAATCTA+AGG | + | chr1.1:76862542-76862561 | MS.gene76850:CDS | 45.0% | |
| GGTTGTACACGATTGGAGAT+TGG | + | chr1.1:76861635-76861654 | MS.gene76850:CDS | 45.0% | |
| GTAGACACAAATGTTACCGG+TGG | - | chr1.1:76860113-76860132 | None:intergenic | 45.0% | |
| GTCACAGTGTAGACAAGGTT+TGG | + | chr1.1:76860389-76860408 | MS.gene76850:intron | 45.0% | |
| GTCATATGAAGATACACGGC+AGG | + | chr1.1:76862844-76862863 | MS.gene76850:CDS | 45.0% | |
| GTGACAACGTGCAGATTGAT+AGG | - | chr1.1:76861776-76861795 | None:intergenic | 45.0% | |
| GTTCGTGAGCTCCATGTTTA+TGG | + | chr1.1:76863194-76863213 | MS.gene76850:CDS | 45.0% | |
| GTTGCTCGTGACACTAATAG+AGG | + | chr1.1:76861680-76861699 | MS.gene76850:CDS | 45.0% | |
| TAAGAGAGGCTGAGGAAAGA+AGG | - | chr1.1:76862878-76862897 | None:intergenic | 45.0% | |
| TACCCCACTCTTGTAATACG+TGG | + | chr1.1:76862240-76862259 | MS.gene76850:CDS | 45.0% | |
| TGAGGCCCAAGACAATAATC+TGG | - | chr1.1:76861593-76861612 | None:intergenic | 45.0% | |
| TGGAACTTTCATGTCCCTTC+CGG | + | chr1.1:76860529-76860548 | MS.gene76850:CDS | 45.0% | |
| TGGGGAGAAGACTTGTAGTA+AGG | + | chr1.1:76860783-76860802 | MS.gene76850:intron | 45.0% | |
| TGGTACACTTCTTATGGAGG+AGG | + | chr1.1:76863524-76863543 | MS.gene76850:CDS | 45.0% | |
| TTATCCACCTGAGCAACTTG+TGG | + | chr1.1:76862429-76862448 | MS.gene76850:CDS | 45.0% | |
| TTCTGACAAGCTACAACACC+AGG | + | chr1.1:76863244-76863263 | MS.gene76850:CDS | 45.0% | |
| TTGTTACGGCTGCGAAAATG+TGG | + | chr1.1:76863128-76863147 | MS.gene76850:CDS | 45.0% | |
| ! | AAGCCCATCTGCTCTAAACA+AGG | - | chr1.1:76862214-76862233 | None:intergenic | 45.0% |
| ! | AGCCCATCTGCTCTAAACAA+GGG | - | chr1.1:76862213-76862232 | None:intergenic | 45.0% |
| ! | AGTCCCTTGTTTAGAGCAGA+TGG | + | chr1.1:76862207-76862226 | MS.gene76850:CDS | 45.0% |
| ! | GCTCTGGACAAGTAGTGTTA+CGG | - | chr1.1:76863154-76863173 | None:intergenic | 45.0% |
| ! | GTCCCTTGTTTAGAGCAGAT+GGG | + | chr1.1:76862208-76862227 | MS.gene76850:CDS | 45.0% |
| ! | GTGTGAGTCTAGTTTGTAGC+TGG | + | chr1.1:76862947-76862966 | MS.gene76850:intron | 45.0% |
| ! | TTTTGCCTGGCTAAAGATGC+CGG | + | chr1.1:76861731-76861750 | MS.gene76850:CDS | 45.0% |
| !! | CCACCTCTTCTGGTTTAATC+TGG | - | chr1.1:76862775-76862794 | None:intergenic | 45.0% |
| !! | CGTAAGAAAGCATTTGTCGC+AGG | - | chr1.1:76861616-76861635 | None:intergenic | 45.0% |
| !! | GAGCGTTGAGATCAACTTTG+TGG | - | chr1.1:76859901-76859920 | None:intergenic | 45.0% |
| !! | TGTTGGTGTTGAAAGGGACA+TGG | + | chr1.1:76862161-76862180 | MS.gene76850:CDS | 45.0% |
| !!! | CTTTTTGGTGTTTGGACACG+TGG | + | chr1.1:76860763-76860782 | MS.gene76850:intron | 45.0% |
| !!! | GAGGAGTGCTTTGGACTTTT+TGG | + | chr1.1:76860748-76860767 | MS.gene76850:intron | 45.0% |
| !!! | TTTTGGTGTTTGGACACGTG+GGG | + | chr1.1:76860765-76860784 | MS.gene76850:intron | 45.0% |
| AACTTTCATGTCCCTTCCGG+CGG | + | chr1.1:76860532-76860551 | MS.gene76850:CDS | 50.0% | |
| ATGTCCACAAGTTGCTCAGG+TGG | - | chr1.1:76862436-76862455 | None:intergenic | 50.0% | |
| ATTCCCTTTCTCAACCCCAG+AGG | - | chr1.1:76862539-76862558 | None:intergenic | 50.0% | |
| ATTTGTGTCTACTGCCCTGG+CGG | + | chr1.1:76860121-76860140 | MS.gene76850:CDS | 50.0% | |
| CAATCTGCACGTTGTCACAG+CGG | + | chr1.1:76861778-76861797 | MS.gene76850:intron | 50.0% | |
| CACCTCTGCCAATGTAGAAG+AGG | + | chr1.1:76860604-76860623 | MS.gene76850:CDS | 50.0% | |
| CACGTGAGAGGCCATACTTA+CGG | - | chr1.1:76859940-76859959 | None:intergenic | 50.0% | |
| CGAACAAGTTCCACCTCTTC+TGG | - | chr1.1:76862785-76862804 | None:intergenic | 50.0% | |
| CGAATTGCACGCATACTGGT+AGG | - | chr1.1:76860196-76860215 | None:intergenic | 50.0% | |
| CTATAAACACGCGTCCATGG+AGG | - | chr1.1:76862484-76862503 | None:intergenic | 50.0% | |
| CTCTGCCAATGTAGAAGAGG+CGG | + | chr1.1:76860607-76860626 | MS.gene76850:CDS | 50.0% | |
| CTTCTTCTTCACTAAGGCCG+TGG | - | chr1.1:76859820-76859839 | None:intergenic | 50.0% | |
| GACACAAATGTTACCGGTGG+TGG | - | chr1.1:76860110-76860129 | None:intergenic | 50.0% | |
| GCAAAAAAGTCACCACGTCC+TGG | + | chr1.1:76859776-76859795 | MS.gene76850:CDS | 50.0% | |
| GCAATGTGAGGACAACGATG+AGG | - | chr1.1:76860088-76860107 | None:intergenic | 50.0% | |
| GCAGCCGTAACAAACCAACA+AGG | - | chr1.1:76863121-76863140 | None:intergenic | 50.0% | |
| GCGGGATATTCCAATGCCTT+TGG | + | chr1.1:76862510-76862529 | MS.gene76850:CDS | 50.0% | |
| GGCACTAATAAGAGAGGCTG+AGG | - | chr1.1:76862886-76862905 | None:intergenic | 50.0% | |
| GGGAAGAAGAACCTCTCGTT+CGG | - | chr1.1:76860002-76860021 | None:intergenic | 50.0% | |
| GTATGCGTGCAATTCGAGCA+AGG | + | chr1.1:76860200-76860219 | MS.gene76850:CDS | 50.0% | |
| TACCTGGATTCCAGCTTCTC+TGG | - | chr1.1:76862623-76862642 | None:intergenic | 50.0% | |
| TCCTTGCAATGGTACCTCCA+TGG | + | chr1.1:76862467-76862486 | MS.gene76850:CDS | 50.0% | |
| TGAAACCGGCATCTTTAGCC+AGG | - | chr1.1:76861739-76861758 | None:intergenic | 50.0% | |
| TGCTCGAATTGCACGCATAC+TGG | - | chr1.1:76860200-76860219 | None:intergenic | 50.0% | |
| TGTGCTGTCTTCTCTTGAGC+AGG | + | chr1.1:76863091-76863110 | MS.gene76850:intron | 50.0% | |
| TTCTTATGGAGGAGGCTGAG+CGG | + | chr1.1:76863532-76863551 | MS.gene76850:CDS | 50.0% | |
| TTTACCAGACTCCGAACGAG+AGG | + | chr1.1:76859988-76860007 | MS.gene76850:CDS | 50.0% | |
| ! | AATGCCTTTGGTGACCTCTG+GGG | + | chr1.1:76862522-76862541 | MS.gene76850:CDS | 50.0% |
| ! | CAATGCCTTTGGTGACCTCT+GGG | + | chr1.1:76862521-76862540 | MS.gene76850:CDS | 50.0% |
| ! | GAACTGGGCTTTATGAGCTC+TGG | + | chr1.1:76862262-76862281 | MS.gene76850:CDS | 50.0% |
| ! | GTCTAGTTTGTAGCTGGCAC+TGG | + | chr1.1:76862953-76862972 | MS.gene76850:intron | 50.0% |
| ! | TATTCCAGATGCGGTTCGGA+CGG | - | chr1.1:76860041-76860060 | None:intergenic | 50.0% |
| ! | TGGAGTCCAAAGCACTTACG+AGG | + | chr1.1:76861655-76861674 | MS.gene76850:CDS | 50.0% |
| !! | AAAGGAGGCTTTGAAGGCCA+CGG | + | chr1.1:76859800-76859819 | MS.gene76850:CDS | 50.0% |
| !! | ATGAGCTCTGGAAAACTGGC+AGG | + | chr1.1:76862274-76862293 | MS.gene76850:CDS | 50.0% |
| !! | GAAAGCATTTGTCGCAGGTG+AGG | - | chr1.1:76861611-76861630 | None:intergenic | 50.0% |
| !! | GAACTGCTGTACCGGTTCAT+GGG | + | chr1.1:76863216-76863235 | MS.gene76850:CDS | 50.0% |
| !! | GGCTAAAGATGCCGGTTTCA+AGG | + | chr1.1:76861739-76861758 | MS.gene76850:CDS | 50.0% |
| !! | TCCATGGAGGTACCATTGCA+AGG | - | chr1.1:76862471-76862490 | None:intergenic | 50.0% |
| !! | TGACCTCTGGGGTTGAGAAA+GGG | + | chr1.1:76862533-76862552 | MS.gene76850:CDS | 50.0% |
| AAGTCACCACGTCCTGGGAA+AGG | + | chr1.1:76859782-76859801 | MS.gene76850:CDS | 55.0% | |
| AATCACGGTAATCCGCCGGA+AGG | - | chr1.1:76860547-76860566 | None:intergenic | 55.0% | |
| AGAACCTCTCGTTCGGAGTC+TGG | - | chr1.1:76859995-76860014 | None:intergenic | 55.0% | |
| ATCACGGTAATCCGCCGGAA+GGG | - | chr1.1:76860546-76860565 | None:intergenic | 55.0% | |
| CAAGTTTGGGTGCACGTGAG+AGG | - | chr1.1:76859952-76859971 | None:intergenic | 55.0% | |
| CCTTCAAAGCCTCCTTTCCC+AGG | - | chr1.1:76859797-76859816 | None:intergenic | 55.0% | |
| CGCCTCTTCTACATTGGCAG+AGG | - | chr1.1:76860609-76860628 | None:intergenic | 55.0% | |
| CGGCTATTCCAGATGCGGTT+CGG | - | chr1.1:76860045-76860064 | None:intergenic | 55.0% | |
| CGTCACCGCCTCTTCTACAT+TGG | - | chr1.1:76860615-76860634 | None:intergenic | 55.0% | |
| GACCAGAGAAGCTGGAATCC+AGG | + | chr1.1:76862618-76862637 | MS.gene76850:CDS | 55.0% | |
| GATGTTCGGACCAGAGAAGC+TGG | + | chr1.1:76862610-76862629 | MS.gene76850:CDS | 55.0% | |
| GCGTGCAATTCGAGCAAGGT+AGG | + | chr1.1:76860204-76860223 | MS.gene76850:intron | 55.0% | |
| TCAACCCCAGAGGTCACCAA+AGG | - | chr1.1:76862529-76862548 | None:intergenic | 55.0% | |
| TCAGAATCCCGCCCATGAAC+CGG | - | chr1.1:76863230-76863249 | None:intergenic | 55.0% | |
| TCTGCTGCGTGCCGTAAGTA+TGG | + | chr1.1:76859926-76859945 | MS.gene76850:CDS | 55.0% | |
| TGTCCTCACATTGCCACCAC+CGG | + | chr1.1:76860094-76860113 | MS.gene76850:CDS | 55.0% | |
| ! | ATTCCAGATGCGGTTCGGAC+GGG | - | chr1.1:76860040-76860059 | None:intergenic | 55.0% |
| ! | CCAATGCCTTTGGTGACCTC+TGG | + | chr1.1:76862520-76862539 | MS.gene76850:CDS | 55.0% |
| ! | CCAGAGGTCACCAAAGGCAT+TGG | - | chr1.1:76862523-76862542 | None:intergenic | 55.0% |
| ! | CCTGGGAAAGGAGGCTTTGA+AGG | + | chr1.1:76859794-76859813 | MS.gene76850:CDS | 55.0% |
| ! | TTACCGGTGGTGGCAATGTG+AGG | - | chr1.1:76860100-76860119 | None:intergenic | 55.0% |
| !! | ACGGGTTTGGCTCGGAGTTT+GGG | - | chr1.1:76860022-76860041 | None:intergenic | 55.0% |
| !! | GGAACTGCTGTACCGGTTCA+TGG | + | chr1.1:76863215-76863234 | MS.gene76850:CDS | 55.0% |
| !! | GTGACCTCTGGGGTTGAGAA+AGG | + | chr1.1:76862532-76862551 | MS.gene76850:CDS | 55.0% |
| AAACCCGTCCGAACCGCATC+TGG | + | chr1.1:76860034-76860053 | MS.gene76850:CDS | 60.0% | |
| AAATCGGAGTCAGGACCGCC+AGG | - | chr1.1:76860139-76860158 | None:intergenic | 60.0% | |
| AAGCCTCCTTTCCCAGGACG+TGG | - | chr1.1:76859791-76859810 | None:intergenic | 60.0% | |
| AATCGGAGTCAGGACCGCCA+GGG | - | chr1.1:76860138-76860157 | None:intergenic | 60.0% | |
| GGCAACTGCAATGGTGGCAG+AGG | + | chr1.1:76859754-76859773 | MS.gene76850:CDS | 60.0% | |
| TCACCACGTCCTGGGAAAGG+AGG | + | chr1.1:76859785-76859804 | MS.gene76850:CDS | 60.0% | |
| ! | AGATGCGGTTCGGACGGGTT+TGG | - | chr1.1:76860035-76860054 | None:intergenic | 60.0% |
| !! | CTGCTGTACCGGTTCATGGG+CGG | + | chr1.1:76863219-76863238 | MS.gene76850:CDS | 60.0% |
| !! | GACGGGTTTGGCTCGGAGTT+TGG | - | chr1.1:76860023-76860042 | None:intergenic | 60.0% |
| !! | TGCTGTACCGGTTCATGGGC+GGG | + | chr1.1:76863220-76863239 | MS.gene76850:CDS | 60.0% |
| ! | CGGTTCGGACGGGTTTGGCT+CGG | - | chr1.1:76860030-76860049 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76859752 | 76863677 | 76859752 | ID=MS.gene76850 |
| chr1.1 | mRNA | 76859752 | 76863677 | 76859752 | ID=MS.gene76850.t1;Parent=MS.gene76850 |
| chr1.1 | exon | 76859752 | 76860221 | 76859752 | ID=MS.gene76850.t1.exon1;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76859752 | 76860221 | 76859752 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76860336 | 76860405 | 76860336 | ID=MS.gene76850.t1.exon2;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76860336 | 76860405 | 76860336 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76860509 | 76860681 | 76860509 | ID=MS.gene76850.t1.exon3;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76860509 | 76860681 | 76860509 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76861586 | 76861760 | 76861586 | ID=MS.gene76850.t1.exon4;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76861586 | 76861760 | 76861586 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76862129 | 76862295 | 76862129 | ID=MS.gene76850.t1.exon5;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76862129 | 76862295 | 76862129 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76862420 | 76862639 | 76862420 | ID=MS.gene76850.t1.exon6;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76862420 | 76862639 | 76862420 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76862761 | 76862865 | 76862761 | ID=MS.gene76850.t1.exon7;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76862761 | 76862865 | 76862761 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76863113 | 76863265 | 76863113 | ID=MS.gene76850.t1.exon8;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76863113 | 76863265 | 76863113 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| chr1.1 | exon | 76863519 | 76863677 | 76863519 | ID=MS.gene76850.t1.exon9;Parent=MS.gene76850.t1 |
| chr1.1 | CDS | 76863519 | 76863677 | 76863519 | ID=cds.MS.gene76850.t1;Parent=MS.gene76850.t1 |
| Gene Sequence |
| Protein sequence |
