AlfalfaGEDB | MS.gene77678

M. sativa cultivar XinJiangDaYe / MS.gene77678

KEGG: K03026
GO: GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005666 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0055029 GO:0061695 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234
PFAM: PF05132.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77678.t1	XP_013455380.1	91.7	315	21	3	1	315	1	310	2.70E-149	538.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77678.t1	P25441	31.6	152	80	4	177	305	272	422	5.2e-08	60.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77678.t1	A0A072UJ26	91.7	315	21	3	1	315	1	310	2.0e-149	538.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049850	MS.gene77678	0.807909	4.01E-50	-1.69E-46
MS.gene052190	MS.gene77678	0.810463	1.14E-50	-1.69E-46
MS.gene052323	MS.gene77678	0.804383	2.22E-49	-1.69E-46
MS.gene052611	MS.gene77678	0.816995	4.15E-52	-1.69E-46
MS.gene052843	MS.gene77678	0.804357	2.25E-49	-1.69E-46
MS.gene053054	MS.gene77678	-0.82179	3.35E-53	-1.69E-46
MS.gene053226	MS.gene77678	0.808053	3.74E-50	-1.69E-46
MS.gene05415	MS.gene77678	0.802069	6.68E-49	-1.69E-46
MS.gene054559	MS.gene77678	0.805621	1.22E-49	-1.69E-46
MS.gene055227	MS.gene77678	0.802718	4.91E-49	-1.69E-46

Showing 1 to 10 of 21 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77678.t1	MTR_4g036455	93.651	315	15	3	1	315	1	310	0.0	554
MS.gene77678.t1	MTR_1g080300	38.188	309	152	13	2	307	6	278	2.86e-44	153

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77678.t1	AT4G25180	40.938	320	139	14	5	308	15	300	1.89e-50	169
MS.gene77678.t1	AT5G09380	37.654	324	139	14	1	313	1	272	6.27e-47	159
MS.gene77678.t1	AT5G09380	45.596	193	88	6	125	313	37	216	8.13e-44	149
MS.gene77678.t1	AT5G09380	35.531	273	121	12	1	266	1	225	3.63e-32	119

Showing 1 to 4 of 4 entries

Previous1Next

Find 69 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCAGGTGTATAAGAG+TGG	0.654564	4.4:-67302333	MS.gene77678:CDS
AAACCTGGATCCCCAGAATT+GGG	0.459343	4.4:+67303020	None:intergenic
AAACTACAGTGTTGTTGGGA+AGG	0.531862	4.4:-67301789	MS.gene77678:CDS
AAATAGTTTGGTACCTTTCG+TGG	0.390750	4.4:+67305236	None:intergenic
AAATGCATCTCGCGCAGCAC+TGG	0.480195	4.4:+67303379	None:intergenic
AACACATTCTTCAACTGCTA+TGG	0.470804	4.4:-67303252	MS.gene77678:CDS
AACTTGTTGGAGCTTCCGAG+TGG	0.660506	4.4:-67302366	MS.gene77678:CDS
AAGCAACCAGTGAACAGTAA+AGG	0.517583	4.4:-67302441	MS.gene77678:CDS
AAGCCCAATTCTGGGGATCC+AGG	0.447243	4.4:-67303023	MS.gene77678:intron
AATTGGTACGTCGAAACTAT+CGG	0.514803	4.4:-67302409	MS.gene77678:CDS

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTTATAGTAGGTGTC+TGG	-	chr4.4:67302694-67302713	MS.gene77678:intron	30.0%
AACCAAATATTACATGGAAC+CGG	+	chr4.4:67304235-67304254	None:intergenic	30.0%
AAGAAAAACTACAGTGTTGT+TGG	-	chr4.4:67305187-67305206	MS.gene77678:intron	30.0%
AATCAACACATATCTGTTAG+TGG	+	chr4.4:67304261-67304280	None:intergenic	30.0%
AGCTTAAAGAAAATCAACTG+TGG	+	chr4.4:67304498-67304517	None:intergenic	30.0%
ATCAACAGCAAAAACATGAT+AGG	-	chr4.4:67302637-67302656	MS.gene77678:CDS	30.0%
ATTATCTCACTAACTTTCTC+AGG	-	chr4.4:67302723-67302742	MS.gene77678:intron	30.0%
ATTTCACTTAATGGTGTGTT+TGG	-	chr4.4:67302865-67302884	MS.gene77678:intron	30.0%
CCAAATAGAATAGAGAATGT+CGG	-	chr4.4:67304148-67304167	MS.gene77678:intron	30.0%
CTATTTCATAGTTGTGATGT+TGG	-	chr4.4:67303331-67303350	MS.gene77678:CDS	30.0%

Showing 1 to 10 of 215 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	67301718	67305285	67301718	ID=MS.gene77678
chr4.4	mRNA	67301718	67305285	67301718	ID=MS.gene77678.t1;Parent=MS.gene77678
chr4.4	exon	67305250	67305285	67305250	ID=MS.gene77678.t1.exon1;Parent=MS.gene77678.t1
chr4.4	CDS	67305250	67305285	67305250	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67305111	67305157	67305111	ID=MS.gene77678.t1.exon2;Parent=MS.gene77678.t1
chr4.4	CDS	67305111	67305157	67305111	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67304966	67305023	67304966	ID=MS.gene77678.t1.exon3;Parent=MS.gene77678.t1
chr4.4	CDS	67304966	67305023	67304966	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67303764	67303803	67303764	ID=MS.gene77678.t1.exon4;Parent=MS.gene77678.t1
chr4.4	CDS	67303764	67303803	67303764	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67303178	67303401	67303178	ID=MS.gene77678.t1.exon5;Parent=MS.gene77678.t1
chr4.4	CDS	67303178	67303401	67303178	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67303024	67303090	67303024	ID=MS.gene77678.t1.exon6;Parent=MS.gene77678.t1
chr4.4	CDS	67303024	67303090	67303024	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67302618	67302709	67302618	ID=MS.gene77678.t1.exon7;Parent=MS.gene77678.t1
chr4.4	CDS	67302618	67302709	67302618	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67302296	67302523	67302296	ID=MS.gene77678.t1.exon8;Parent=MS.gene77678.t1
chr4.4	CDS	67302296	67302523	67302296	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1
chr4.4	exon	67301718	67301873	67301718	ID=MS.gene77678.t1.exon9;Parent=MS.gene77678.t1
chr4.4	CDS	67301718	67301873	67301718	ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1

Gene Sequence

>MS.gene77678

ATGGATAAGAAAGATCCAAACAGAACTCCACGAAAGGTACCAAACTATTTTTTTCCCTACTTCATCGTGTTCCTCAGAAAAGTGCTTTTCTTTTAAAATCGATTTTTTTGTTTTCATTTTCTTCACAGCTCAAGTTTATTCCAAAGGGAAAACCCAAATCTCAAACAACGAAAATGTAAGTTAAAACCACATAAATACTATTCAGAATTTTGAAATAATCAGTTTTTCATTGTTGAAAAGTGATTTTTTTTTTTTGTTACAGTGAAGCTGGTGTTGAAGATGAACAGAATAATTCTGAAGTTCGTGTACGTAGCTTATTGGTAAGTCTCTAATTATTACTATTTTTTGTTGTTAATTAAATGTTATTAGATAAATTGGTGTTAATTTATGATTAATTTAAGTTAATTATATCTTAATTCGTGTTTCGCTTGTCAGAAAGAATAAGAATAAATTGCAGTGAAATGAACTAAATTATATCATTTCGAAAGTGTTGAATAAAAATCGGAGTTCTTTGTATGAATGAATACTCAACATAAATATATAATTTTAAAAAAAAAAAATGTACAAATTATTTTATTGTGGACGCTATTTTTTTAATATAATTTGTGTTTCTTGGGTGTTTGTTATGCTACTTTTTTTAATTATTTTAGTTTTATTCTTGGTTAATTTAGGAGAATTTTTTTTATATGGTAAAAATTGGATGTGTGTTGGTATAAAAAGTTAATCGACTAACTAATTTTTAACCAAGATATAAAGATTTCACTTTTGGATTTGTGCAGGTAATTGAAAATTTTTAAGGATAAACCTTCCATAAATTTCTTATGTCAAATTTGTACATTGTTTTTTTTCAAATTTGGCTGTTCCTTTTAAGTAATTTTAGTTAGCATTTTCTTTGAAGTAATTTTAGTCCGAAAATTTAATCAACAGCAAAAACATGATAGGTTTTGAAAGTGGCATTTATTCACATAGTTAATAGAAAATGTTATAGTAGGTGTCTGGTTTTTCATTATCTCACTAACTTTCTCAGGTTAGAAATTTTTAGTATCAGTAATTTAAGTTCACATGATAAATATTAGTTTAGTGAATATCATATAACTCACTATAATAGGTTTAATGAATATCCCGTAAAAACGTATTTGCGATTTCGATTTCACTTAATGGTGTGTTTGGTTGAACAGTGGACAACAACCAAAGTGAGTTTGAAGCTCTTACACCGTAATTTTTTAGAAGCTACAATGTGTTACTTATTTTAACTCCATATCTTGTTATTATATTCCATTTTTGTAATGTATCAGACATTACACATGTGACATGTTCTGTTCTAATTCTAACCTGTCCTACCAAACGCTATCATAGTATTGTATATCAAAAGCTACTAAAATATATCTAAAAGTAGCAATTATTCTGTTGATAAAGATATGCTAATGATGCTTTTTTTTTCTTCTCTATATTAACTCCATTTGTTTTATCTATATATTGCAGGAGAGGGTTGGAAGACGCCAGCCTAAAGTTGCAAAACAATGTAAATTCTCCTTACATTTGCAAAACATTATTTGTCATCTGTTTTTACCACTTTATATGTCAAAAGACATTGCATAACATTAATAATCACACTATTTCATAGTTGTGATGTTGGGAAGGAAATATAATATTTTGGAATAAGAGAGAATTGCTTACTTTCAAATGCATATTTGAATGTTCCATTTTCTTTACAAAGAAGTTTCATTTTCCTATTTAGACATTAGCAAAAATCATTTTACCATGGAAAAAAATTACTTTGACTAGCATGAGAATATCTTAGATTCTATGTGGCCTGCTCTGGTCACAATGATAAATTATCATCACATTCTAAAACACATTCTTTTTGGTGTTTAAAACTTGCAGCCAGTGCTGCGCGAGATGCATTTCCTAGAGATTCATCACTTTCACTGAGATCATTTGGCAGTGGCAGTGGTAATGGTGAAAGTAGTGGCTCAGAATCCAAATTTTCTGCTGATGATAAATATGGTTCAACACATTCTTCAACTGCTATGGACTATCAGAGTTATACTTCTGTAATAGATGTTATGGATGACTCCACTGATGACGAAGACTACGTGGAACCATGGGTGAGAAATTCTTATCCCTCAGATGTTCACTTCCTATCTGCATCTTTCTCATCCATATAAGCATCTGAACCTTTGATTTAACTACAGGATCCTGACACAAACTCAAACTATCCTACTACTCTTCCTCTAAGGAAGCCCAATTCTGGGGATCCAGGTTTGATGAACAAAACAAATAAAGCTTTTAAGGATATGTAAAATGCTAGCATTGCACAATTTAATATGCTCTTTCCGTCAAACTATCACCTATTGGATGAATTTCATGCAAGTCCCGCCACTTTATGTTGGACCCATTCCCAAAACGGCGGAACATACTCGAGTTTCACCAAATAGAATAGAGAATGTCGGAAAAAGTGTGTTAGAGTGATTGTTTCTAACACTTTTTTCTAGGGATATATATTAGCAATAGCCGGTTCCATGTAATATTTGGTTTTGCCACTAACAGATATGTGTTGATTTTTAATATGGTAGCAATTCTTGATAAGATAGAATTTGGGGAGGCTGCCACTGATGTCAAATATGATGGTGATAATCTTAATTCCGCAGCAGAACTTGGGCTCTTGGTTAGTAGTAACAATGACATAATATTAAAATAATCCTACTATCATTATGCAGCTGAAATTTCGATATAATAATACATAGAAAATTTTTCTTCAGGACAAAAGTGAGAAACCACAGTTGATTTTCTTTAAGCTTCCTACTTTTCTGCCTTGTGTCAAGCAACCAGTGAACAGTAAAGGGAAGGAGAAAATTGGTACGTCGAAACTATCGGCAAAGGCGAGAAAGGCGAGTAACTTGTTGGAGCTTCCGAGTGGATATATGGGCAAAATGCAGGTGTATAAGAGTGGAGCAGTCAAATTAAAAATAGGAGAAACCCTGTATGATGTAAGTTCTATCCATGTTTCAAAATTGACAATAAGCATAACAAGCCACCTCATTTACCATATATTTACTGAATGAAGTACCAAGTTAGTTTAATTGTGATTCAGTCTAAATATGCAACAATGAATTGAAGATCCCAAAAAAGTTATCCCATATTTTGGTTATTATACCATTTTTAACTTTGAGGAGTAACCTTGGCACAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAACAAGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCATTCCCAGACCCTGCATATGCGGGAGCTCTAGTGCACCAGGTTGCCCTTTTTATACCATTTTTAACTTTGATTATTGAAGTTGATAACAAATTAGTTTTGTTTCTCATATAGGTATCTCCAGGTACCAAAACCATACTTGATCAAGATGTTGTAGCAATTAACACTGCAAAGAAAAACTACAGTGTTGTTGGGAAGGTTACAGTTGACGCAAAGGCTGTTGTAACTCCTGATATTGATGCCATTGATCTTGAATCCATTGGACTATAA

Protein sequence

>MS.gene77678.t1

MDKKDPNRTPRKLKFIPKGKPKSQTTKIEAGVEDEQNNSEVRVRSLLERVGRRQPKVAKQSSAARDAFPRDSSLSLRSFGSGSGNGESSGSESKFSADDKYGSTHSSTAMDYQSYTSVIDVMDDSTDDEDYVEPWDPDTNSNYPTTLPLRKPNSGDPAILDKIEFGEAATDVKYDGDNLNSAAELGLLDKSEKPQLIFFKLPTFLPCVKQPVNSKGKEKIGTSKLSAKARKASNLLELPSGYMGKMQVYKSGAVKLKIGETLYDVSPGTKTILDQDVVAINTAKKNYSVVGKVTVDAKAVVTPDIDAIDLESIGL