Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77678.t1 | XP_013455380.1 | 91.7 | 315 | 21 | 3 | 1 | 315 | 1 | 310 | 2.70E-149 | 538.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77678.t1 | P25441 | 31.6 | 152 | 80 | 4 | 177 | 305 | 272 | 422 | 5.2e-08 | 60.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77678.t1 | A0A072UJ26 | 91.7 | 315 | 21 | 3 | 1 | 315 | 1 | 310 | 2.0e-149 | 538.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene77678 | 0.807909 | 4.01E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene77678 | 0.810463 | 1.14E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene77678 | 0.804383 | 2.22E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene77678 | 0.816995 | 4.15E-52 | -1.69E-46 |
| MS.gene052843 | MS.gene77678 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene77678 | -0.82179 | 3.35E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene77678 | 0.808053 | 3.74E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene77678 | 0.802069 | 6.68E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene77678 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene77678 | 0.802718 | 4.91E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene77678 | 0.804154 | 2.47E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene77678 | 0.829836 | 4.12E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene77678 | 0.803006 | 4.28E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene77678 | 0.847262 | 1.29E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene77678 | 0.832292 | 1.03E-55 | -1.69E-46 |
| MS.gene057060 | MS.gene77678 | 0.801434 | 9.02E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene77678 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene77678 | 0.807628 | 4.61E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene77678 | 0.803625 | 3.19E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene77678 | 0.801963 | 7.03E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene77678 | 0.807261 | 5.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77678.t1 | MTR_4g036455 | 93.651 | 315 | 15 | 3 | 1 | 315 | 1 | 310 | 0.0 | 554 |
| MS.gene77678.t1 | MTR_1g080300 | 38.188 | 309 | 152 | 13 | 2 | 307 | 6 | 278 | 2.86e-44 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77678.t1 | AT4G25180 | 40.938 | 320 | 139 | 14 | 5 | 308 | 15 | 300 | 1.89e-50 | 169 |
| MS.gene77678.t1 | AT5G09380 | 37.654 | 324 | 139 | 14 | 1 | 313 | 1 | 272 | 6.27e-47 | 159 |
| MS.gene77678.t1 | AT5G09380 | 45.596 | 193 | 88 | 6 | 125 | 313 | 37 | 216 | 8.13e-44 | 149 |
| MS.gene77678.t1 | AT5G09380 | 35.531 | 273 | 121 | 12 | 1 | 266 | 1 | 225 | 3.63e-32 | 119 |
Find 69 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGATAAGATAGAATT+TGG | 0.136497 | 4.4:-67302685 | MS.gene77678:CDS |
| TTTATCATCAGCAGAAAATT+TGG | 0.182176 | 4.4:+67303283 | None:intergenic |
| CCTCTAAGGAAGCCCAATTC+TGG | 0.252706 | 4.4:-67303032 | MS.gene77678:CDS |
| TACAACATCTTGATCAAGTA+TGG | 0.271210 | 4.4:+67301832 | None:intergenic |
| CCAGAATTGGGCTTCCTTAG+AGG | 0.286926 | 4.4:+67303032 | None:intergenic |
| GGAGCTTCCGAGTGGATATA+TGG | 0.289404 | 4.4:-67302358 | MS.gene77678:CDS |
| AGTTCGTGTACGTAGCTTAT+TGG | 0.293904 | 4.4:-67304965 | MS.gene77678:intron |
| TACTTCTGTAATAGATGTTA+TGG | 0.301982 | 4.4:-67303216 | MS.gene77678:CDS |
| ATCTTGATCAAGTATGGTTT+TGG | 0.308348 | 4.4:+67301838 | None:intergenic |
| CTTAATTCCGCAGCAGAACT+TGG | 0.309638 | 4.4:-67302625 | MS.gene77678:CDS |
| TTCTTGATAAGATAGAATTT+GGG | 0.337508 | 4.4:-67302684 | MS.gene77678:CDS |
| CAAACCTGGATCCCCAGAAT+TGG | 0.339561 | 4.4:+67303019 | None:intergenic |
| CGCAGCAGAACTTGGGCTCT+TGG | 0.353607 | 4.4:-67302617 | MS.gene77678:intron |
| ACCTTTCGTGGAGTTCTGTT+TGG | 0.356823 | 4.4:+67305248 | None:intergenic |
| GTTTGGATCTTTCTTATCCA+TGG | 0.365988 | 4.4:+67305265 | None:intergenic |
| AGATCAATGGCATCAATATC+AGG | 0.368015 | 4.4:+67301737 | None:intergenic |
| AGTAAAGGGAAGGAGAAAAT+TGG | 0.372837 | 4.4:-67302426 | MS.gene77678:CDS |
| TCACTTTCACTGAGATCATT+TGG | 0.383113 | 4.4:-67303344 | MS.gene77678:CDS |
| TCCTTCCCTTTACTGTTCAC+TGG | 0.389526 | 4.4:+67302435 | None:intergenic |
| AAATAGTTTGGTACCTTTCG+TGG | 0.390750 | 4.4:+67305236 | None:intergenic |
| ATCCTACTACTCTTCCTCTA+AGG | 0.415975 | 4.4:-67303046 | MS.gene77678:CDS |
| GGATAGTTTGAGTTTGTGTC+AGG | 0.427676 | 4.4:+67303065 | None:intergenic |
| CTCTAAGGAAGCCCAATTCT+GGG | 0.429888 | 4.4:-67303031 | MS.gene77678:CDS |
| CAGCTCAAGTTTATTCCAAA+GGG | 0.441221 | 4.4:-67305138 | MS.gene77678:CDS |
| AAGCCCAATTCTGGGGATCC+AGG | 0.447243 | 4.4:-67303023 | MS.gene77678:intron |
| AGCAACCAGTGAACAGTAAA+GGG | 0.453368 | 4.4:-67302440 | MS.gene77678:CDS |
| AAACCTGGATCCCCAGAATT+GGG | 0.459343 | 4.4:+67303020 | None:intergenic |
| GCCATTGATCTTGAATCCAT+TGG | 0.463045 | 4.4:-67301725 | MS.gene77678:CDS |
| GGATAGAACTTACATCATAC+AGG | 0.466152 | 4.4:+67302283 | None:intergenic |
| AACACATTCTTCAACTGCTA+TGG | 0.470804 | 4.4:-67303252 | MS.gene77678:CDS |
| AGATCATTTGGCAGTGGCAG+TGG | 0.473266 | 4.4:-67303332 | MS.gene77678:CDS |
| ACTATCGGCAAAGGCGAGAA+AGG | 0.473408 | 4.4:-67302394 | MS.gene77678:CDS |
| AAATGCATCTCGCGCAGCAC+TGG | 0.480195 | 4.4:+67303379 | None:intergenic |
| TTCCTTAGAGGAAGAGTAGT+AGG | 0.492693 | 4.4:+67303044 | None:intergenic |
| TCCAATGGATTCAAGATCAA+TGG | 0.494630 | 4.4:+67301724 | None:intergenic |
| GAGAAAGGCGAGTAACTTGT+TGG | 0.500938 | 4.4:-67302379 | MS.gene77678:CDS |
| TTTGGCAGTGGCAGTGGTAA+TGG | 0.504694 | 4.4:-67303326 | MS.gene77678:CDS |
| TGGATATATGGGCAAAATGC+AGG | 0.505913 | 4.4:-67302346 | MS.gene77678:CDS |
| TTTCTCATATAGGTATCTCC+AGG | 0.514422 | 4.4:-67301863 | MS.gene77678:intron |
| AATTGGTACGTCGAAACTAT+CGG | 0.514803 | 4.4:-67302409 | MS.gene77678:CDS |
| AAGCAACCAGTGAACAGTAA+AGG | 0.517583 | 4.4:-67302441 | MS.gene77678:CDS |
| ACAGCTCAAGTTTATTCCAA+AGG | 0.522946 | 4.4:-67305139 | MS.gene77678:intron |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 4.4:-67303793 | MS.gene77678:intron |
| AAACTACAGTGTTGTTGGGA+AGG | 0.531862 | 4.4:-67301789 | MS.gene77678:CDS |
| GAGCTTCCGAGTGGATATAT+GGG | 0.538050 | 4.4:-67302357 | MS.gene77678:CDS |
| TTAATTCCGCAGCAGAACTT+GGG | 0.538505 | 4.4:-67302624 | MS.gene77678:CDS |
| CACGTAGTCTTCGTCATCAG+TGG | 0.543002 | 4.4:+67303187 | None:intergenic |
| TTGACACAAGGCAGAAAAGT+AGG | 0.543588 | 4.4:+67302462 | None:intergenic |
| TTCACTGGTTGCTTGACACA+AGG | 0.560755 | 4.4:+67302450 | None:intergenic |
| AGTGAAAGTGATGAATCTCT+AGG | 0.578456 | 4.4:+67303356 | None:intergenic |
| ACGAAGACTACGTGGAACCA+TGG | 0.578625 | 4.4:-67303178 | MS.gene77678:CDS |
| GAAGGTTACAGTTGACGCAA+AGG | 0.581529 | 4.4:-67301771 | MS.gene77678:CDS |
| ACCAGTGAACAGTAAAGGGA+AGG | 0.581704 | 4.4:-67302436 | MS.gene77678:CDS |
| TCACTGAGATCATTTGGCAG+TGG | 0.587322 | 4.4:-67303338 | MS.gene77678:CDS |
| GCCACTGATGTCAAATATGA+TGG | 0.589781 | 4.4:-67302655 | MS.gene77678:CDS |
| CGAAGACTACGTGGAACCAT+GGG | 0.591952 | 4.4:-67303177 | MS.gene77678:intron |
| TCTTGATAAGATAGAATTTG+GGG | 0.600434 | 4.4:-67302683 | MS.gene77678:CDS |
| CACTGATGACGAAGACTACG+TGG | 0.626190 | 4.4:-67303186 | MS.gene77678:CDS |
| TCCAAACAGAACTCCACGAA+AGG | 0.631732 | 4.4:-67305249 | MS.gene77678:intron |
| TGATAAGATAGAATTTGGGG+AGG | 0.632493 | 4.4:-67302680 | MS.gene77678:CDS |
| TACGTCGAAACTATCGGCAA+AGG | 0.632734 | 4.4:-67302403 | MS.gene77678:CDS |
| ACCATCATATTTGACATCAG+TGG | 0.634261 | 4.4:+67302654 | None:intergenic |
| CAAGAGCCCAAGTTCTGCTG+CGG | 0.648219 | 4.4:+67302618 | None:intergenic |
| AAAATGCAGGTGTATAAGAG+TGG | 0.654564 | 4.4:-67302333 | MS.gene77678:CDS |
| AACTTGTTGGAGCTTCCGAG+TGG | 0.660506 | 4.4:-67302366 | MS.gene77678:CDS |
| TCTAAGGAAGCCCAATTCTG+GGG | 0.663909 | 4.4:-67303030 | MS.gene77678:CDS |
| GATAGAACTTACATCATACA+GGG | 0.671603 | 4.4:+67302284 | None:intergenic |
| AGTGGTAATGGTGAAAGTAG+TGG | 0.688464 | 4.4:-67303314 | MS.gene77678:CDS |
| AGCTTAAAGAAAATCAACTG+TGG | 0.700545 | 4.4:+67302486 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATGTTATTAGATAAAT+TGG | - | chr4.4:67302073-67302092 | MS.gene77678:intron | 10.0% |
| !!! | AATTATTTTAGTTTTATTCT+TGG | - | chr4.4:67302357-67302376 | MS.gene77678:CDS | 10.0% |
| !!! | TTTTTTTATATGGTAAAAAT+TGG | - | chr4.4:67302395-67302414 | MS.gene77678:CDS | 10.0% |
| !! | AAGTTAAAAATGGTATAAAA+AGG | + | chr4.4:67305066-67305085 | None:intergenic | 15.0% |
| !! | AATTTGACATAAGAAATTTA+TGG | + | chr4.4:67302529-67302548 | None:intergenic | 15.0% |
| !! | AGTTAAAAATGGTATAAAAA+GGG | + | chr4.4:67305065-67305084 | None:intergenic | 15.0% |
| !! | CAATATATAGATAAAACAAA+TGG | + | chr4.4:67303177-67303196 | None:intergenic | 15.0% |
| !! | TCAATAATCAAAGTTAAAAA+TGG | + | chr4.4:67305076-67305095 | None:intergenic | 15.0% |
| !! | TTAATAGAAAATGTTATAGT+AGG | - | chr4.4:67302687-67302706 | MS.gene77678:CDS | 15.0% |
| !!! | ACATTGTTTTTTTTCAAATT+TGG | - | chr4.4:67302552-67302571 | MS.gene77678:intron | 15.0% |
| !!! | ATATGTGTTGATTTTTAATA+TGG | - | chr4.4:67304268-67304287 | MS.gene77678:intron | 15.0% |
| !!! | ATGTACAAATTATTTTATTG+TGG | - | chr4.4:67302277-67302296 | MS.gene77678:intron | 15.0% |
| !!! | TAATATAATTTGTGTTTCTT+GGG | - | chr4.4:67302312-67302331 | MS.gene77678:CDS | 15.0% |
| !!! | TTAATATAATTTGTGTTTCT+TGG | - | chr4.4:67302311-67302330 | MS.gene77678:CDS | 15.0% |
| !!! | TTAGGAGAATTTTTTTTATA+TGG | - | chr4.4:67302385-67302404 | MS.gene77678:CDS | 15.0% |
| !! | AAACTTCTTTGTAAAGAAAA+TGG | + | chr4.4:67303421-67303440 | None:intergenic | 20.0% |
| !! | AAAGTGAAATCTTTATATCT+TGG | + | chr4.4:67302464-67302483 | None:intergenic | 20.0% |
| !! | AATTCTGAATAGTATTTATG+TGG | + | chr4.4:67301907-67301926 | None:intergenic | 20.0% |
| !! | ATCATATAACTCACTATAAT+AGG | - | chr4.4:67302804-67302823 | MS.gene77678:intron | 20.0% |
| !! | ATGGTATAATAACCAAAATA+TGG | + | chr4.4:67304858-67304877 | None:intergenic | 20.0% |
| !! | ATTCTTGATAAGATAGAATT+TGG | - | chr4.4:67304296-67304315 | MS.gene77678:intron | 20.0% |
| !! | GCTAACTAAAATTACTTAAA+AGG | + | chr4.4:67302583-67302602 | None:intergenic | 20.0% |
| !! | TACTTCATTCAGTAAATATA+TGG | + | chr4.4:67304767-67304786 | None:intergenic | 20.0% |
| !! | TGGAATATAATAACAAGATA+TGG | + | chr4.4:67302976-67302995 | None:intergenic | 20.0% |
| !! | TGGTATAATAACCAAAATAT+GGG | + | chr4.4:67304857-67304876 | None:intergenic | 20.0% |
| !! | TTCTTGATAAGATAGAATTT+GGG | - | chr4.4:67304297-67304316 | MS.gene77678:intron | 20.0% |
| !!! | AAAAAAGTTATCCCATATTT+TGG | - | chr4.4:67304843-67304862 | MS.gene77678:intron | 20.0% |
| !!! | AAAATATGGGATAACTTTTT+TGG | + | chr4.4:67304844-67304863 | None:intergenic | 20.0% |
| !!! | AAATATGGGATAACTTTTTT+GGG | + | chr4.4:67304843-67304862 | None:intergenic | 20.0% |
| !!! | AATAATGTTTTGCAAATGTA+AGG | + | chr4.4:67303252-67303271 | None:intergenic | 20.0% |
| !!! | AGATATAAAGATTTCACTTT+TGG | - | chr4.4:67302464-67302483 | MS.gene77678:CDS | 20.0% |
| !!! | ATTAGTTTTGTTTCTCATAT+AGG | - | chr4.4:67305108-67305127 | MS.gene77678:intron | 20.0% |
| !!! | ATTCTAAAACACATTCTTTT+TGG | - | chr4.4:67303563-67303582 | MS.gene77678:intron | 20.0% |
| !!! | ATTTTTGCTAATGTCTAAAT+AGG | + | chr4.4:67303450-67303469 | None:intergenic | 20.0% |
| !!! | CAAAACAAATAAAGCTTTTA+AGG | - | chr4.4:67303990-67304009 | MS.gene77678:intron | 20.0% |
| !!! | CAGGTAATTGAAAATTTTTA+AGG | - | chr4.4:67302494-67302513 | MS.gene77678:CDS | 20.0% |
| !!! | GTTTTATTCTTGGTTAATTT+AGG | - | chr4.4:67302367-67302386 | MS.gene77678:CDS | 20.0% |
| !!! | TACATAGAAAATTTTTCTTC+AGG | - | chr4.4:67304458-67304477 | MS.gene77678:intron | 20.0% |
| !!! | TTATACCATTTTTAACTTTG+AGG | - | chr4.4:67304869-67304888 | MS.gene77678:intron | 20.0% |
| !!! | TTATTGTCAATTTTGAAACA+TGG | + | chr4.4:67304722-67304741 | None:intergenic | 20.0% |
| !!! | TTGTAGCTTCTAAAAAATTA+CGG | + | chr4.4:67302934-67302953 | None:intergenic | 20.0% |
| !!! | TTGTTTTATCTATATATTGC+AGG | - | chr4.4:67303178-67303197 | MS.gene77678:CDS | 20.0% |
| !!! | TTTGCTGTTGATTAAATTTT+CGG | + | chr4.4:67302629-67302648 | None:intergenic | 20.0% |
| ! | AAGTAGGGAAAAAAATAGTT+TGG | + | chr4.4:67301760-67301779 | None:intergenic | 25.0% |
| ! | AGAATATCTTAGATTCTATG+TGG | - | chr4.4:67303507-67303526 | MS.gene77678:intron | 25.0% |
| ! | CAGTAAATATATGGTAAATG+AGG | + | chr4.4:67304758-67304777 | None:intergenic | 25.0% |
| ! | GAATCACAATTAAACTAACT+TGG | + | chr4.4:67304790-67304809 | None:intergenic | 25.0% |
| ! | TAAATATATGGTAAATGAGG+TGG | + | chr4.4:67304755-67304774 | None:intergenic | 25.0% |
| ! | TACTTCTGTAATAGATGTTA+TGG | - | chr4.4:67303765-67303784 | MS.gene77678:CDS | 25.0% |
| ! | TATTTCATAGTTGTGATGTT+GGG | - | chr4.4:67303332-67303351 | MS.gene77678:CDS | 25.0% |
| ! | TCTTGATAAGATAGAATTTG+GGG | - | chr4.4:67304298-67304317 | MS.gene77678:intron | 25.0% |
| ! | TGACATAAGAAATTTATGGA+AGG | + | chr4.4:67302525-67302544 | None:intergenic | 25.0% |
| ! | TGTCTGATACATTACAAAAA+TGG | + | chr4.4:67302996-67303015 | None:intergenic | 25.0% |
| ! | TTACTCCTCAAAGTTAAAAA+TGG | + | chr4.4:67304877-67304896 | None:intergenic | 25.0% |
| ! | TTTATCATCAGCAGAAAATT+TGG | + | chr4.4:67303701-67303720 | None:intergenic | 25.0% |
| !! | AAATCGCAAATACGTTTTTA+CGG | + | chr4.4:67302843-67302862 | None:intergenic | 25.0% |
| !! | ATGTCTTTTGACATATAAAG+TGG | + | chr4.4:67303290-67303309 | None:intergenic | 25.0% |
| !! | GGGAAGGAAATATAATATTT+TGG | - | chr4.4:67303352-67303371 | MS.gene77678:CDS | 25.0% |
| !! | TAGCAAAAATCATTTTACCA+TGG | - | chr4.4:67303460-67303479 | MS.gene77678:intron | 25.0% |
| !! | TTTTCTGCTGATGATAAATA+TGG | - | chr4.4:67303703-67303722 | MS.gene77678:intron | 25.0% |
| !!! | ATTTTCGTTGTTTGAGATTT+GGG | + | chr4.4:67301873-67301892 | None:intergenic | 25.0% |
| !!! | CGAAAGTGTTGAATAAAAAT+CGG | - | chr4.4:67302200-67302219 | MS.gene77678:intron | 25.0% |
| !!! | GTCAAAGTAATTTTTTTCCA+TGG | + | chr4.4:67303480-67303499 | None:intergenic | 25.0% |
| !!! | GTTTCTAACACTTTTTTCTA+GGG | - | chr4.4:67304192-67304211 | MS.gene77678:intron | 25.0% |
| !!! | TGTTTCTAACACTTTTTTCT+AGG | - | chr4.4:67304191-67304210 | MS.gene77678:intron | 25.0% |
| !!! | TTACATTGTTTTGCAACTTT+AGG | + | chr4.4:67303224-67303243 | None:intergenic | 25.0% |
| AAAATGTTATAGTAGGTGTC+TGG | - | chr4.4:67302694-67302713 | MS.gene77678:intron | 30.0% | |
| AACCAAATATTACATGGAAC+CGG | + | chr4.4:67304235-67304254 | None:intergenic | 30.0% | |
| AAGAAAAACTACAGTGTTGT+TGG | - | chr4.4:67305187-67305206 | MS.gene77678:intron | 30.0% | |
| AATCAACACATATCTGTTAG+TGG | + | chr4.4:67304261-67304280 | None:intergenic | 30.0% | |
| AGCTTAAAGAAAATCAACTG+TGG | + | chr4.4:67304498-67304517 | None:intergenic | 30.0% | |
| ATCAACAGCAAAAACATGAT+AGG | - | chr4.4:67302637-67302656 | MS.gene77678:CDS | 30.0% | |
| ATTATCTCACTAACTTTCTC+AGG | - | chr4.4:67302723-67302742 | MS.gene77678:intron | 30.0% | |
| ATTTCACTTAATGGTGTGTT+TGG | - | chr4.4:67302865-67302884 | MS.gene77678:intron | 30.0% | |
| CCAAATAGAATAGAGAATGT+CGG | - | chr4.4:67304148-67304167 | MS.gene77678:intron | 30.0% | |
| CTATTTCATAGTTGTGATGT+TGG | - | chr4.4:67303331-67303350 | MS.gene77678:CDS | 30.0% | |
| GATAGAACTTACATCATACA+GGG | + | chr4.4:67304700-67304719 | None:intergenic | 30.0% | |
| GGAGCAGTCAAATTAAAAAT+AGG | - | chr4.4:67304669-67304688 | MS.gene77678:intron | 30.0% | |
| GGATATATATTAGCAATAGC+CGG | - | chr4.4:67304213-67304232 | MS.gene77678:intron | 30.0% | |
| TACAACATCTTGATCAAGTA+TGG | + | chr4.4:67305152-67305171 | None:intergenic | 30.0% | |
| TATCTATATATTGCAGGAGA+GGG | - | chr4.4:67303184-67303203 | MS.gene77678:CDS | 30.0% | |
| TGGCAAAACCAAATATTACA+TGG | + | chr4.4:67304241-67304260 | None:intergenic | 30.0% | |
| TTATCTATATATTGCAGGAG+AGG | - | chr4.4:67303183-67303202 | MS.gene77678:CDS | 30.0% | |
| TTGCATGAAATTCATCCAAT+AGG | + | chr4.4:67304071-67304090 | None:intergenic | 30.0% | |
| ! | AATCGCAAATACGTTTTTAC+GGG | + | chr4.4:67302842-67302861 | None:intergenic | 30.0% |
| ! | AGAAAAACTACAGTGTTGTT+GGG | - | chr4.4:67305188-67305207 | MS.gene77678:intron | 30.0% |
| ! | ATCTTGATCAAGTATGGTTT+TGG | + | chr4.4:67305146-67305165 | None:intergenic | 30.0% |
| ! | TACAATACTATGATAGCGTT+TGG | + | chr4.4:67303061-67303080 | None:intergenic | 30.0% |
| ! | TGAACCTTTGATTTAACTAC+AGG | - | chr4.4:67303891-67303910 | MS.gene77678:intron | 30.0% |
| !! | CATTTTCGTTGTTTGAGATT+TGG | + | chr4.4:67301874-67301893 | None:intergenic | 30.0% |
| !!! | AAAAGAAAAGCACTTTTCTG+AGG | + | chr4.4:67301792-67301811 | None:intergenic | 30.0% |
| !!! | AACATGATAGGTTTTGAAAG+TGG | - | chr4.4:67302649-67302668 | MS.gene77678:CDS | 30.0% |
| !!! | TTTGTTTTGTTCATCAAACC+TGG | + | chr4.4:67303979-67303998 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTACAGTGAAGC+TGG | - | chr4.4:67301966-67301985 | MS.gene77678:intron | 30.0% |
| AAAATGCAGGTGTATAAGAG+TGG | - | chr4.4:67304648-67304667 | MS.gene77678:intron | 35.0% | |
| AAATAGTTTGGTACCTTTCG+TGG | + | chr4.4:67301748-67301767 | None:intergenic | 35.0% | |
| AACACATTCTTCAACTGCTA+TGG | - | chr4.4:67303729-67303748 | MS.gene77678:intron | 35.0% | |
| AATTGGTACGTCGAAACTAT+CGG | - | chr4.4:67304572-67304591 | MS.gene77678:intron | 35.0% | |
| ACAGCTCAAGTTTATTCCAA+AGG | - | chr4.4:67301842-67301861 | MS.gene77678:CDS | 35.0% | |
| ACCATCATATTTGACATCAG+TGG | + | chr4.4:67304330-67304349 | None:intergenic | 35.0% | |
| AGATCAATGGCATCAATATC+AGG | + | chr4.4:67305247-67305266 | None:intergenic | 35.0% | |
| AGTAAAGGGAAGGAGAAAAT+TGG | - | chr4.4:67304555-67304574 | MS.gene77678:intron | 35.0% | |
| AGTGAAAGTGATGAATCTCT+AGG | + | chr4.4:67303628-67303647 | None:intergenic | 35.0% | |
| CAAAGGTTCAGATGCTTATA+TGG | + | chr4.4:67303881-67303900 | None:intergenic | 35.0% | |
| CAGCTCAAGTTTATTCCAAA+GGG | - | chr4.4:67301843-67301862 | MS.gene77678:CDS | 35.0% | |
| CCGACATTCTCTATTCTATT+TGG | + | chr4.4:67304151-67304170 | None:intergenic | 35.0% | |
| CTCTTGTGTAAAACAAGGTA+AGG | - | chr4.4:67304965-67304984 | MS.gene77678:intron | 35.0% | |
| GCGATTTCGATTTCACTTAA+TGG | - | chr4.4:67302856-67302875 | MS.gene77678:intron | 35.0% | |
| GGATAGAACTTACATCATAC+AGG | + | chr4.4:67304701-67304720 | None:intergenic | 35.0% | |
| GGATCCTGTAGTTAAATCAA+AGG | + | chr4.4:67303898-67303917 | None:intergenic | 35.0% | |
| GGTAAAAATTGGATGTGTGT+TGG | - | chr4.4:67302406-67302425 | MS.gene77678:CDS | 35.0% | |
| TAAGAGCTTCAAACTCACTT+TGG | + | chr4.4:67302909-67302928 | None:intergenic | 35.0% | |
| TCACTTTCACTGAGATCATT+TGG | - | chr4.4:67303637-67303656 | MS.gene77678:intron | 35.0% | |
| TCCAATAGGTGATAGTTTGA+CGG | + | chr4.4:67304057-67304076 | None:intergenic | 35.0% | |
| TGATAAGATAGAATTTGGGG+AGG | - | chr4.4:67304301-67304320 | MS.gene77678:intron | 35.0% | |
| TTCAGCTGCATAATGATAGT+AGG | + | chr4.4:67304423-67304442 | None:intergenic | 35.0% | |
| TTTCTCATATAGGTATCTCC+AGG | - | chr4.4:67305118-67305137 | MS.gene77678:CDS | 35.0% | |
| ! | ATACTATGATAGCGTTTGGT+AGG | + | chr4.4:67303057-67303076 | None:intergenic | 35.0% |
| ! | ATTTTGCCCATATATCCACT+CGG | + | chr4.4:67304633-67304652 | None:intergenic | 35.0% |
| ! | TCCAATGGATTCAAGATCAA+TGG | + | chr4.4:67305260-67305279 | None:intergenic | 35.0% |
| ! | TTAACTTTGAGGAGTAACCT+TGG | - | chr4.4:67304880-67304899 | MS.gene77678:intron | 35.0% |
| !! | ATTGTTTTGCAACTTTAGGC+TGG | + | chr4.4:67303220-67303239 | None:intergenic | 35.0% |
| !! | TTTCACTTTTGGATTTGTGC+AGG | - | chr4.4:67302475-67302494 | MS.gene77678:CDS | 35.0% |
| !!! | CTTACCTTGTTTTACACAAG+AGG | + | chr4.4:67304967-67304986 | None:intergenic | 35.0% |
| AAGCAACCAGTGAACAGTAA+AGG | - | chr4.4:67304540-67304559 | MS.gene77678:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+AGG | - | chr4.4:67304960-67304979 | MS.gene77678:intron | 40.0% | |
| AGATAGGAAGTGAACATCTG+AGG | + | chr4.4:67303845-67303864 | None:intergenic | 40.0% | |
| AGCAACCAGTGAACAGTAAA+GGG | - | chr4.4:67304541-67304560 | MS.gene77678:intron | 40.0% | |
| AGTTCGTGTACGTAGCTTAT+TGG | - | chr4.4:67302016-67302035 | MS.gene77678:intron | 40.0% | |
| ATCCTACTACTCTTCCTCTA+AGG | - | chr4.4:67303935-67303954 | MS.gene77678:intron | 40.0% | |
| ATGGTATAAAAAGGGCAACC+TGG | + | chr4.4:67305057-67305076 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.4:67304991-67305010 | MS.gene77678:CDS | 40.0% | |
| GATAGGAAGTGAACATCTGA+GGG | + | chr4.4:67303844-67303863 | None:intergenic | 40.0% | |
| GCCACTGATGTCAAATATGA+TGG | - | chr4.4:67304326-67304345 | MS.gene77678:intron | 40.0% | |
| GCCATTGATCTTGAATCCAT+TGG | - | chr4.4:67305256-67305275 | MS.gene77678:CDS | 40.0% | |
| GGATAAGAATTTCTCACCCA+TGG | + | chr4.4:67303823-67303842 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr4.4:67304916-67304935 | MS.gene77678:intron | 40.0% | |
| TATATATTGCAGGAGAGGGT+TGG | - | chr4.4:67303188-67303207 | MS.gene77678:CDS | 40.0% | |
| TCATAGTTGTGATGTTGGGA+AGG | - | chr4.4:67303336-67303355 | MS.gene77678:CDS | 40.0% | |
| TCCGTCAAACTATCACCTAT+TGG | - | chr4.4:67304053-67304072 | MS.gene77678:intron | 40.0% | |
| TGGATATATGGGCAAAATGC+AGG | - | chr4.4:67304635-67304654 | MS.gene77678:intron | 40.0% | |
| TGGATGAGAAAGATGCAGAT+AGG | + | chr4.4:67303861-67303880 | None:intergenic | 40.0% | |
| TTAATTCCGCAGCAGAACTT+GGG | - | chr4.4:67304357-67304376 | MS.gene77678:intron | 40.0% | |
| TTCCTTAGAGGAAGAGTAGT+AGG | + | chr4.4:67303940-67303959 | None:intergenic | 40.0% | |
| TTGACACAAGGCAGAAAAGT+AGG | + | chr4.4:67304522-67304541 | None:intergenic | 40.0% | |
| TTTATCATTGTGACCAGAGC+AGG | + | chr4.4:67303533-67303552 | None:intergenic | 40.0% | |
| ! | AAACTACAGTGTTGTTGGGA+AGG | - | chr4.4:67305192-67305211 | MS.gene77678:intron | 40.0% |
| ! | AGCCGGTTCCATGTAATATT+TGG | - | chr4.4:67304230-67304249 | MS.gene77678:intron | 40.0% |
| ! | GGATAGTTTGAGTTTGTGTC+AGG | + | chr4.4:67303919-67303938 | None:intergenic | 40.0% |
| !! | AGTGGTAATGGTGAAAGTAG+TGG | - | chr4.4:67303667-67303686 | MS.gene77678:intron | 40.0% |
| !! | TGAGATTTGGGTTTTCCCTT+TGG | + | chr4.4:67301861-67301880 | None:intergenic | 40.0% |
| !!! | TCAAGTATGGTTTTGGTACC+TGG | + | chr4.4:67305139-67305158 | None:intergenic | 40.0% |
| AAACCTGGATCCCCAGAATT+GGG | + | chr4.4:67303964-67303983 | None:intergenic | 45.0% | |
| ACCAGTGAACAGTAAAGGGA+AGG | - | chr4.4:67304545-67304564 | MS.gene77678:intron | 45.0% | |
| ACCTTTCGTGGAGTTCTGTT+TGG | + | chr4.4:67301736-67301755 | None:intergenic | 45.0% | |
| ATGGGTCCAACATAAAGTGG+CGG | + | chr4.4:67304097-67304116 | None:intergenic | 45.0% | |
| CAACTTTACCAGTTGTGCCA+AGG | + | chr4.4:67304900-67304919 | None:intergenic | 45.0% | |
| CTGAGGAACACGATGAAGTA+GGG | + | chr4.4:67301775-67301794 | None:intergenic | 45.0% | |
| CTTAATTCCGCAGCAGAACT+TGG | - | chr4.4:67304356-67304375 | MS.gene77678:intron | 45.0% | |
| GAAGGTTACAGTTGACGCAA+AGG | - | chr4.4:67305210-67305229 | MS.gene77678:intron | 45.0% | |
| GAGCTTCCGAGTGGATATAT+GGG | - | chr4.4:67304624-67304643 | MS.gene77678:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.4:67304990-67305009 | MS.gene77678:CDS | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.4:67304987-67305006 | MS.gene77678:CDS | 45.0% | |
| GGAATGGGTCCAACATAAAG+TGG | + | chr4.4:67304100-67304119 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr4.4:67304922-67304941 | MS.gene77678:intron | 45.0% | |
| TACGTCGAAACTATCGGCAA+AGG | - | chr4.4:67304578-67304597 | MS.gene77678:intron | 45.0% | |
| TCACTGAGATCATTTGGCAG+TGG | - | chr4.4:67303643-67303662 | MS.gene77678:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr4.4:67304923-67304942 | MS.gene77678:intron | 45.0% | |
| TCCAAACAGAACTCCACGAA+AGG | - | chr4.4:67301732-67301751 | MS.gene77678:CDS | 45.0% | |
| TCCTTCCCTTTACTGTTCAC+TGG | + | chr4.4:67304549-67304568 | None:intergenic | 45.0% | |
| TCTAAGGAAGCCCAATTCTG+GGG | - | chr4.4:67303951-67303970 | MS.gene77678:intron | 45.0% | |
| TCTGAGGAACACGATGAAGT+AGG | + | chr4.4:67301776-67301795 | None:intergenic | 45.0% | |
| TGGTGTGTTTGGTTGAACAG+TGG | - | chr4.4:67302876-67302895 | MS.gene77678:intron | 45.0% | |
| TGTTGGACCCATTCCCAAAA+CGG | - | chr4.4:67304105-67304124 | MS.gene77678:intron | 45.0% | |
| ! | ATGATAGCGTTTGGTAGGAC+AGG | + | chr4.4:67303052-67303071 | None:intergenic | 45.0% |
| ! | CTCTAAGGAAGCCCAATTCT+GGG | - | chr4.4:67303950-67303969 | MS.gene77678:intron | 45.0% |
| ! | GAGAAAGGCGAGTAACTTGT+TGG | - | chr4.4:67304602-67304621 | MS.gene77678:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.4:67304956-67304975 | None:intergenic | 45.0% |
| ! | TTCACTGGTTGCTTGACACA+AGG | + | chr4.4:67304534-67304553 | None:intergenic | 45.0% |
| ACGAAGACTACGTGGAACCA+TGG | - | chr4.4:67303803-67303822 | MS.gene77678:intron | 50.0% | |
| ACTATCGGCAAAGGCGAGAA+AGG | - | chr4.4:67304587-67304606 | MS.gene77678:intron | 50.0% | |
| AGATCATTTGGCAGTGGCAG+TGG | - | chr4.4:67303649-67303668 | MS.gene77678:intron | 50.0% | |
| AGATTCTATGTGGCCTGCTC+TGG | - | chr4.4:67303517-67303536 | MS.gene77678:intron | 50.0% | |
| AGGAGTAACCTTGGCACAAC+TGG | - | chr4.4:67304889-67304908 | MS.gene77678:intron | 50.0% | |
| ATTCCCAGACCCTGCATATG+CGG | - | chr4.4:67305018-67305037 | MS.gene77678:intron | 50.0% | |
| CAAACCTGGATCCCCAGAAT+TGG | + | chr4.4:67303965-67303984 | None:intergenic | 50.0% | |
| CACGTAGTCTTCGTCATCAG+TGG | + | chr4.4:67303797-67303816 | None:intergenic | 50.0% | |
| CATATGCAGGGTCTGGGAAT+GGG | + | chr4.4:67305018-67305037 | None:intergenic | 50.0% | |
| CCAGAATTGGGCTTCCTTAG+AGG | + | chr4.4:67303952-67303971 | None:intergenic | 50.0% | |
| CGAAGACTACGTGGAACCAT+GGG | - | chr4.4:67303804-67303823 | MS.gene77678:intron | 50.0% | |
| GGAGCTTCCGAGTGGATATA+TGG | - | chr4.4:67304623-67304642 | MS.gene77678:intron | 50.0% | |
| TGGGTCCAACATAAAGTGGC+GGG | + | chr4.4:67304096-67304115 | None:intergenic | 50.0% | |
| TTTGGCAGTGGCAGTGGTAA+TGG | - | chr4.4:67303655-67303674 | MS.gene77678:intron | 50.0% | |
| ! | CAAGTCCCGCCACTTTATGT+TGG | - | chr4.4:67304088-67304107 | MS.gene77678:intron | 50.0% |
| ! | CACTGATGACGAAGACTACG+TGG | - | chr4.4:67303795-67303814 | MS.gene77678:intron | 50.0% |
| ! | CCTCTAAGGAAGCCCAATTC+TGG | - | chr4.4:67303949-67303968 | MS.gene77678:intron | 50.0% |
| ! | TCGAGTATGTTCCGCCGTTT+TGG | + | chr4.4:67304122-67304141 | None:intergenic | 50.0% |
| !! | AACTTGTTGGAGCTTCCGAG+TGG | - | chr4.4:67304615-67304634 | MS.gene77678:intron | 50.0% |
| !! | CGAGTATGTTCCGCCGTTTT+GGG | + | chr4.4:67304121-67304140 | None:intergenic | 50.0% |
| !!! | ATGTTCCGCCGTTTTGGGAA+TGG | + | chr4.4:67304116-67304135 | None:intergenic | 50.0% |
| !!! | TGTTCCGCCGTTTTGGGAAT+GGG | + | chr4.4:67304115-67304134 | None:intergenic | 50.0% |
| AAATGCATCTCGCGCAGCAC+TGG | + | chr4.4:67303605-67303624 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.4:67304935-67304954 | MS.gene77678:intron | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr4.4:67305031-67305050 | None:intergenic | 55.0% | |
| CAAGAGCCCAAGTTCTGCTG+CGG | + | chr4.4:67304366-67304385 | None:intergenic | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr4.4:67305030-67305049 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCTGGGAA+TGG | + | chr4.4:67305019-67305038 | None:intergenic | 55.0% | |
| TGGACCCATTCCCAAAACGG+CGG | - | chr4.4:67304108-67304127 | MS.gene77678:intron | 55.0% | |
| TGGGAATGGGTCCCACCATT+TGG | + | chr4.4:67305005-67305024 | None:intergenic | 55.0% | |
| TTCCCAGACCCTGCATATGC+GGG | - | chr4.4:67305019-67305038 | MS.gene77678:intron | 55.0% | |
| ! | AAGCCCAATTCTGGGGATCC+AGG | - | chr4.4:67303958-67303977 | MS.gene77678:intron | 55.0% |
| CGCAGCAGAACTTGGGCTCT+TGG | - | chr4.4:67304364-67304383 | MS.gene77678:intron | 60.0% | |
| CTCCCGCATATGCAGGGTCT+GGG | + | chr4.4:67305024-67305043 | None:intergenic | 60.0% | |
| GCTCCCGCATATGCAGGGTC+TGG | + | chr4.4:67305025-67305044 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+AGG | - | chr4.4:67305036-67305055 | MS.gene77678:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 67301718 | 67305285 | 67301718 | ID=MS.gene77678 |
| chr4.4 | mRNA | 67301718 | 67305285 | 67301718 | ID=MS.gene77678.t1;Parent=MS.gene77678 |
| chr4.4 | exon | 67305250 | 67305285 | 67305250 | ID=MS.gene77678.t1.exon1;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67305250 | 67305285 | 67305250 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67305111 | 67305157 | 67305111 | ID=MS.gene77678.t1.exon2;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67305111 | 67305157 | 67305111 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67304966 | 67305023 | 67304966 | ID=MS.gene77678.t1.exon3;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67304966 | 67305023 | 67304966 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67303764 | 67303803 | 67303764 | ID=MS.gene77678.t1.exon4;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67303764 | 67303803 | 67303764 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67303178 | 67303401 | 67303178 | ID=MS.gene77678.t1.exon5;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67303178 | 67303401 | 67303178 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67303024 | 67303090 | 67303024 | ID=MS.gene77678.t1.exon6;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67303024 | 67303090 | 67303024 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67302618 | 67302709 | 67302618 | ID=MS.gene77678.t1.exon7;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67302618 | 67302709 | 67302618 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67302296 | 67302523 | 67302296 | ID=MS.gene77678.t1.exon8;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67302296 | 67302523 | 67302296 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| chr4.4 | exon | 67301718 | 67301873 | 67301718 | ID=MS.gene77678.t1.exon9;Parent=MS.gene77678.t1 |
| chr4.4 | CDS | 67301718 | 67301873 | 67301718 | ID=cds.MS.gene77678.t1;Parent=MS.gene77678.t1 |
| Gene Sequence |
| Protein sequence |
