Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052843.t1 | RHN78223.1 | 75.6 | 454 | 81 | 4 | 1 | 440 | 1 | 438 | 6.20E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052843.t1 | Q8L3W1 | 24.7 | 336 | 206 | 10 | 7 | 298 | 4 | 336 | 1.1e-14 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052843.t1 | A0A396JPN4 | 75.6 | 454 | 81 | 4 | 1 | 440 | 1 | 438 | 4.5e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052843.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051957 | MS.gene052843 | 0.806553 | 7.78E-50 | -1.69E-46 |
| MS.gene052829 | MS.gene052843 | 0.946661 | 3.01E-105 | -1.69E-46 |
| MS.gene052843 | MS.gene053883 | 0.803147 | 4.01E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene06269 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene052843 | MS.gene067208 | 0.810011 | 1.42E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene067656 | 0.803805 | 2.93E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene068154 | 0.886078 | 4.67E-72 | -1.69E-46 |
| MS.gene052843 | MS.gene071441 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene071442 | 0.805871 | 1.08E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene071444 | 0.807856 | 4.12E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene071457 | 0.807832 | 4.17E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene08578 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene25778 | 0.821557 | 3.79E-53 | -1.69E-46 |
| MS.gene052843 | MS.gene28652 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene31881 | 0.959061 | 4.98E-117 | -1.69E-46 |
| MS.gene052843 | MS.gene32262 | 0.810992 | 8.75E-51 | -1.69E-46 |
| MS.gene052843 | MS.gene36496 | 0.809002 | 2.35E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene38976 | 0.817807 | 2.72E-52 | -1.69E-46 |
| MS.gene052843 | MS.gene51511 | 0.815101 | 1.10E-51 | -1.69E-46 |
| MS.gene052843 | MS.gene51836 | 0.81181 | 5.81E-51 | -1.69E-46 |
| MS.gene052843 | MS.gene53586 | 0.805881 | 1.08E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene54842 | 0.826092 | 3.28E-54 | -1.69E-46 |
| MS.gene052843 | MS.gene64249 | 0.83878 | 2.35E-57 | -1.69E-46 |
| MS.gene052843 | MS.gene67746 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene052843 | MS.gene72268 | 0.827726 | 1.33E-54 | -1.69E-46 |
| MS.gene052843 | MS.gene73014 | 0.806192 | 9.27E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene74367 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene052843 | MS.gene76158 | 0.837298 | 5.64E-57 | -1.69E-46 |
| MS.gene052843 | MS.gene77678 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene82397 | -0.820082 | 8.28E-53 | -1.69E-46 |
| MS.gene052843 | MS.gene84803 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene86086 | 0.804104 | 2.54E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052843.t1 | MTR_1g035570 | 71.652 | 448 | 70 | 5 | 1 | 438 | 1 | 401 | 0.0 | 601 |
| MS.gene052843.t1 | MTR_1g035490 | 68.012 | 322 | 73 | 7 | 131 | 433 | 20 | 330 | 7.18e-132 | 383 |
| MS.gene052843.t1 | MTR_1g035640 | 47.035 | 489 | 178 | 12 | 1 | 432 | 1 | 465 | 1.79e-127 | 377 |
| MS.gene052843.t1 | MTR_1g035620 | 43.363 | 452 | 190 | 12 | 1 | 430 | 1 | 408 | 3.01e-108 | 326 |
| MS.gene052843.t1 | MTR_1g050845 | 41.905 | 420 | 166 | 12 | 1 | 398 | 1 | 364 | 8.59e-85 | 277 |
| MS.gene052843.t1 | MTR_6g061070 | 35.556 | 450 | 252 | 12 | 14 | 431 | 27 | 470 | 2.77e-76 | 246 |
| MS.gene052843.t1 | MTR_1g035650 | 41.991 | 231 | 93 | 5 | 1 | 218 | 1 | 203 | 1.07e-47 | 162 |
| MS.gene052843.t1 | MTR_8g103940 | 28.416 | 461 | 271 | 14 | 14 | 430 | 48 | 493 | 3.96e-39 | 147 |
| MS.gene052843.t1 | MTR_1g108780 | 26.652 | 469 | 262 | 14 | 20 | 430 | 12 | 456 | 2.79e-38 | 144 |
| MS.gene052843.t1 | MTR_7g050560 | 33.562 | 292 | 164 | 9 | 14 | 298 | 22 | 290 | 1.56e-34 | 131 |
| MS.gene052843.t1 | MTR_7g050710 | 31.988 | 322 | 180 | 11 | 9 | 308 | 13 | 317 | 2.13e-34 | 131 |
| MS.gene052843.t1 | MTR_5g044670 | 30.132 | 302 | 179 | 7 | 14 | 302 | 25 | 307 | 1.16e-33 | 129 |
| MS.gene052843.t1 | MTR_3g098790 | 31.058 | 293 | 179 | 8 | 14 | 298 | 22 | 299 | 2.41e-32 | 125 |
| MS.gene052843.t1 | MTR_7g050590 | 31.959 | 291 | 173 | 9 | 21 | 298 | 2 | 280 | 2.76e-31 | 122 |
| MS.gene052843.t1 | MTR_1g035510 | 34.361 | 227 | 129 | 9 | 21 | 241 | 2 | 214 | 6.57e-30 | 116 |
| MS.gene052843.t1 | MTR_7g050720 | 31.013 | 316 | 199 | 12 | 1 | 298 | 1 | 315 | 1.65e-29 | 117 |
| MS.gene052843.t1 | MTR_7g050580 | 33.444 | 302 | 165 | 11 | 9 | 298 | 13 | 290 | 1.79e-28 | 114 |
| MS.gene052843.t1 | MTR_1g035480 | 48.246 | 114 | 56 | 2 | 14 | 127 | 26 | 136 | 1.98e-28 | 110 |
| MS.gene052843.t1 | MTR_3g061310 | 27.645 | 293 | 187 | 8 | 9 | 296 | 12 | 284 | 1.01e-27 | 112 |
| MS.gene052843.t1 | MTR_1g033740 | 43.860 | 114 | 61 | 2 | 14 | 127 | 31 | 141 | 1.46e-26 | 106 |
| MS.gene052843.t1 | MTR_3g061350 | 26.689 | 296 | 185 | 8 | 9 | 296 | 12 | 283 | 5.91e-26 | 107 |
| MS.gene052843.t1 | MTR_1g035460 | 24.450 | 409 | 247 | 12 | 21 | 381 | 2 | 396 | 2.99e-25 | 107 |
| MS.gene052843.t1 | MTR_3g061340 | 27.273 | 297 | 172 | 13 | 9 | 296 | 12 | 273 | 3.94e-25 | 104 |
| MS.gene052843.t1 | MTR_3g061320 | 24.915 | 293 | 189 | 8 | 9 | 296 | 12 | 278 | 2.29e-24 | 102 |
| MS.gene052843.t1 | MTR_1g035500 | 44.262 | 122 | 64 | 3 | 5 | 126 | 26 | 143 | 8.09e-24 | 98.6 |
| MS.gene052843.t1 | MTR_4g119990 | 27.362 | 307 | 193 | 9 | 9 | 296 | 15 | 310 | 8.41e-24 | 102 |
| MS.gene052843.t1 | MTR_3g061370 | 24.834 | 302 | 183 | 8 | 9 | 296 | 9 | 280 | 3.10e-23 | 99.4 |
| MS.gene052843.t1 | MTR_1g035470 | 40.909 | 110 | 62 | 2 | 21 | 130 | 2 | 108 | 3.62e-22 | 92.4 |
| MS.gene052843.t1 | MTR_6g043890 | 27.046 | 281 | 184 | 8 | 13 | 284 | 23 | 291 | 8.28e-22 | 96.3 |
| MS.gene052843.t1 | MTR_1g035520 | 25.949 | 316 | 201 | 8 | 5 | 296 | 76 | 382 | 6.53e-20 | 91.3 |
| MS.gene052843.t1 | MTR_1g035520 | 42.478 | 113 | 55 | 3 | 329 | 431 | 271 | 383 | 2.16e-17 | 84.0 |
| MS.gene052843.t1 | MTR_3g061290 | 37.815 | 119 | 68 | 3 | 9 | 123 | 12 | 128 | 3.22e-19 | 85.9 |
| MS.gene052843.t1 | MTR_3g061330 | 31.548 | 168 | 105 | 5 | 9 | 168 | 12 | 177 | 1.11e-18 | 85.5 |
| MS.gene052843.t1 | MTR_1g034210 | 26.301 | 365 | 198 | 13 | 6 | 303 | 4 | 364 | 1.21e-18 | 87.4 |
| MS.gene052843.t1 | MTR_1g021270 | 23.659 | 317 | 191 | 10 | 17 | 286 | 27 | 339 | 1.72e-13 | 72.8 |
| MS.gene052843.t1 | MTR_4g068320 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 4.13e-13 | 71.2 |
| MS.gene052843.t1 | MTR_7g050640 | 40.541 | 111 | 56 | 4 | 3 | 103 | 5 | 115 | 5.72e-13 | 65.9 |
| MS.gene052843.t1 | MTR_1g034240 | 34.234 | 111 | 66 | 3 | 7 | 110 | 5 | 115 | 1.69e-12 | 69.3 |
| MS.gene052843.t1 | MTR_3g005480 | 21.528 | 288 | 168 | 6 | 14 | 299 | 30 | 261 | 1.44e-11 | 65.1 |
| MS.gene052843.t1 | MTR_1g034210 | 25.413 | 303 | 157 | 11 | 6 | 242 | 4 | 303 | 8.46e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052843.t1 | AT3G18990 | 23.599 | 339 | 212 | 8 | 7 | 301 | 4 | 339 | 2.29e-21 | 95.5 |
| MS.gene052843.t1 | AT3G18990 | 23.810 | 336 | 209 | 8 | 7 | 298 | 4 | 336 | 4.24e-21 | 94.4 |
Find 73 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1.4:+20417885 | MS.gene052843:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1.4:+20415668 | MS.gene052843:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1.4:+20417686 | MS.gene052843:CDS |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1.4:-20415533 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1.4:-20415774 | None:intergenic |
| CATTAACAGCTTCAGATCTT+AGG | 0.270045 | 1.4:-20416383 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1.4:+20415537 | MS.gene052843:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.4:+20415624 | MS.gene052843:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1.4:+20416576 | MS.gene052843:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1.4:+20417855 | MS.gene052843:CDS |
| AGAGCAATACCCTTTACTTT+TGG | 0.307014 | 1.4:-20416986 | None:intergenic |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1.4:-20415575 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.4:-20416746 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1.4:-20416794 | None:intergenic |
| CTCTTGACTTTCAAATTCAT+TGG | 0.331789 | 1.4:+20415695 | MS.gene052843:CDS |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1.4:-20416788 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1.4:-20415574 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1.4:-20416542 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.352785 | 1.4:-20415959 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1.4:+20417687 | MS.gene052843:CDS |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1.4:+20416577 | MS.gene052843:CDS |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1.4:-20415897 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1.4:-20417663 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1.4:+20417674 | MS.gene052843:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1.4:-20415583 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.4:-20415750 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1.4:-20417885 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.4:+20416666 | MS.gene052843:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1.4:+20417792 | MS.gene052843:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1.4:+20417735 | MS.gene052843:CDS |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1.4:+20417747 | MS.gene052843:CDS |
| AAGATGATCCTATGAAAATC+TGG | 0.438926 | 1.4:-20415369 | None:intergenic |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1.4:+20415965 | MS.gene052843:CDS |
| TTGACTTTCAAATTCATTGG+TGG | 0.455682 | 1.4:+20415698 | MS.gene052843:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1.4:+20416977 | MS.gene052843:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1.4:+20416976 | MS.gene052843:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1.4:+20416350 | MS.gene052843:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1.4:+20417700 | MS.gene052843:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1.4:-20416412 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1.4:+20417753 | MS.gene052843:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1.4:+20417757 | MS.gene052843:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1.4:+20415983 | MS.gene052843:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1.4:-20416411 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1.4:+20416957 | MS.gene052843:CDS |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1.4:+20417412 | MS.gene052843:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.4:+20415776 | MS.gene052843:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1.4:+20415887 | MS.gene052843:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.549102 | 1.4:-20415677 | None:intergenic |
| GAGTGATGAGAGTTCAGATG+AGG | 0.552149 | 1.4:+20415928 | MS.gene052843:CDS |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1.4:+20416788 | MS.gene052843:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1.4:+20416944 | MS.gene052843:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1.4:+20416591 | MS.gene052843:CDS |
| TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1.4:+20417394 | MS.gene052843:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1.4:+20415871 | MS.gene052843:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1.4:+20416341 | MS.gene052843:intron |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1.4:+20416654 | MS.gene052843:CDS |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1.4:+20416720 | MS.gene052843:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1.4:+20415797 | MS.gene052843:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1.4:+20415578 | MS.gene052843:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1.4:+20415526 | MS.gene052843:intron |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1.4:+20416581 | MS.gene052843:CDS |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1.4:+20417647 | MS.gene052843:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1.4:+20416947 | MS.gene052843:CDS |
| ACTTACAAAGAAATAGCCAT+TGG | 0.605595 | 1.4:-20416445 | None:intergenic |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1.4:+20416429 | MS.gene052843:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1.4:+20416598 | MS.gene052843:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:+20415542 | MS.gene052843:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1.4:+20417785 | MS.gene052843:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1.4:+20417436 | MS.gene052843:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1.4:+20417688 | MS.gene052843:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1.4:+20416612 | MS.gene052843:CDS |
| AAACACCAAAGCAAACTCAA+AGG | 0.664353 | 1.4:+20415954 | MS.gene052843:CDS |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1.4:+20416335 | MS.gene052843:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGTATATTTCTTAATT+TGG | + | chr1.4:20417087-20417106 | MS.gene052843:intron | 10.0% |
| !!! | CAAATATATCTAAATTTTTT+GGG | + | chr1.4:20417323-20417342 | MS.gene052843:intron | 10.0% |
| !!! | TCAAATATATCTAAATTTTT+TGG | + | chr1.4:20417322-20417341 | MS.gene052843:intron | 10.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1.4:20417115-20417134 | MS.gene052843:intron | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.4:20417308-20417327 | None:intergenic | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1.4:20417191-20417210 | None:intergenic | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr1.4:20417458-20417477 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTTTTTTTGT+AGG | + | chr1.4:20416196-20416215 | MS.gene052843:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1.4:20415753-20415772 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.4:20415639-20415658 | MS.gene052843:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.4:20415640-20415659 | MS.gene052843:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.4:20415725-20415744 | MS.gene052843:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1.4:20415601-20415620 | MS.gene052843:CDS | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1.4:20417025-20417044 | MS.gene052843:intron | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1.4:20416090-20416109 | MS.gene052843:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1.4:20416813-20416832 | MS.gene052843:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1.4:20417024-20417043 | MS.gene052843:intron | 15.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr1.4:20417570-20417589 | None:intergenic | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.4:20416749-20416768 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr1.4:20417630-20417649 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1.4:20417674-20417693 | MS.gene052843:CDS | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr1.4:20417457-20417476 | None:intergenic | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1.4:20415361-20415380 | MS.gene052843:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1.4:20415600-20415619 | MS.gene052843:CDS | 20.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1.4:20416317-20416336 | MS.gene052843:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1.4:20417686-20417705 | MS.gene052843:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1.4:20417735-20417754 | MS.gene052843:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1.4:20415680-20415699 | None:intergenic | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1.4:20417687-20417706 | MS.gene052843:CDS | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr1.4:20417512-20417531 | None:intergenic | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1.4:20416644-20416663 | MS.gene052843:CDS | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1.4:20415537-20415556 | MS.gene052843:CDS | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1.4:20415578-20415597 | MS.gene052843:CDS | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr1.4:20417511-20417530 | None:intergenic | 25.0% |
| ! | CTTGACAAGGTTATAAAAAA+GGG | + | chr1.4:20416903-20416922 | MS.gene052843:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1.4:20416414-20416433 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr1.4:20417571-20417590 | None:intergenic | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1.4:20417277-20417296 | None:intergenic | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | + | chr1.4:20416577-20416596 | MS.gene052843:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1.4:20416643-20416662 | MS.gene052843:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1.4:20415577-20415596 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr1.4:20417456-20417475 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1.4:20415536-20415555 | None:intergenic | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1.4:20417122-20417141 | MS.gene052843:intron | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1.4:20416415-20416434 | None:intergenic | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | + | chr1.4:20416576-20416595 | MS.gene052843:CDS | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1.4:20415578-20415597 | None:intergenic | 25.0% |
| ! | TTGACAAGGTTATAAAAAAG+GGG | + | chr1.4:20416904-20416923 | MS.gene052843:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1.4:20416560-20416579 | MS.gene052843:CDS | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | + | chr1.4:20416720-20416739 | MS.gene052843:CDS | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1.4:20415776-20415795 | MS.gene052843:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1.4:20416648-20416667 | None:intergenic | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1.4:20415604-20415623 | MS.gene052843:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1.4:20415777-20415796 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCTTGACA+AGG | + | chr1.4:20416890-20416909 | MS.gene052843:intron | 25.0% |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1.4:20416650-20416669 | MS.gene052843:CDS | 30.0% | |
| AAGATGATCCTATGAAAATC+TGG | - | chr1.4:20415372-20415391 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1.4:20416448-20416467 | None:intergenic | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1.4:20416797-20416816 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1.4:20417688-20417707 | MS.gene052843:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1.4:20417785-20417804 | MS.gene052843:CDS | 30.0% | |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1.4:20416647-20416666 | MS.gene052843:CDS | 30.0% | |
| CCTTGACAAGGTTATAAAAA+AGG | + | chr1.4:20416902-20416921 | MS.gene052843:intron | 30.0% | |
| CTCTTGACTTTCAAATTCAT+TGG | + | chr1.4:20415695-20415714 | MS.gene052843:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1.4:20417855-20417874 | MS.gene052843:CDS | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1.4:20416516-20416535 | MS.gene052843:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.4:20415542-20415561 | MS.gene052843:CDS | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr1.4:20417666-20417685 | None:intergenic | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr1.4:20416545-20416564 | None:intergenic | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1.4:20415508-20415527 | MS.gene052843:intron | 30.0% | |
| TTGACTTTCAAATTCATTGG+TGG | + | chr1.4:20415698-20415717 | MS.gene052843:CDS | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1.4:20415507-20415526 | MS.gene052843:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1.4:20415668-20415687 | MS.gene052843:CDS | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1.4:20417553-20417572 | None:intergenic | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1.4:20416098-20416117 | MS.gene052843:intron | 30.0% |
| ! | CTTTTAACCTCTAATGTGTA+AGG | + | chr1.4:20417580-20417599 | MS.gene052843:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1.4:20416116-20416135 | MS.gene052843:intron | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1.4:20415712-20415731 | MS.gene052843:CDS | 30.0% |
| !!! | AGGTGAGTTTGATCTTTTTT+GGG | + | chr1.4:20416003-20416022 | MS.gene052843:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1.4:20415596-20415615 | None:intergenic | 30.0% |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1.4:20416649-20416668 | None:intergenic | 30.0% |
| !!! | CCTTTTTTATAACCTTGTCA+AGG | - | chr1.4:20416905-20416924 | None:intergenic | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1.4:20416013-20416032 | MS.gene052843:intron | 30.0% |
| AAACACCAAAGCAAACTCAA+AGG | + | chr1.4:20415954-20415973 | MS.gene052843:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1.4:20417792-20417811 | MS.gene052843:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1.4:20415871-20415890 | MS.gene052843:CDS | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1.4:20415983-20416002 | MS.gene052843:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1.4:20415900-20415919 | None:intergenic | 35.0% | |
| CATTAACAGCTTCAGATCTT+AGG | - | chr1.4:20416386-20416405 | None:intergenic | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1.4:20416944-20416963 | MS.gene052843:CDS | 35.0% | |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1.4:20416914-20416933 | MS.gene052843:CDS | 35.0% | |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1.4:20417700-20417719 | MS.gene052843:CDS | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.4:20415624-20415643 | MS.gene052843:CDS | 35.0% | |
| TGTGTTTATGCATGTACAGA+AGG | + | chr1.4:20417380-20417399 | MS.gene052843:intron | 35.0% | |
| TTAACCTCTAATGTGTAAGG+TGG | + | chr1.4:20417583-20417602 | MS.gene052843:intron | 35.0% | |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1.4:20416989-20417008 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1.4:20416523-20416542 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.4:20415614-20415633 | MS.gene052843:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1.4:20416591-20416610 | MS.gene052843:CDS | 35.0% |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1.4:20416985-20417004 | None:intergenic | 35.0% |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1.4:20415981-20416000 | None:intergenic | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1.4:20416361-20416380 | None:intergenic | 35.0% |
| !!! | CAGGTGAGTTTGATCTTTTT+TGG | + | chr1.4:20416002-20416021 | MS.gene052843:intron | 35.0% |
| AAGACATTGGAGGAACATCT+AGG | + | chr1.4:20416957-20416976 | MS.gene052843:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1.4:20416977-20416996 | MS.gene052843:CDS | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1.4:20417747-20417766 | MS.gene052843:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1.4:20416321-20416340 | MS.gene052843:intron | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1.4:20416429-20416448 | MS.gene052843:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1.4:20415965-20415984 | MS.gene052843:CDS | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1.4:20415586-20415605 | None:intergenic | 40.0% | |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1.4:20416788-20416807 | MS.gene052843:CDS | 40.0% | |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1.4:20415526-20415545 | MS.gene052843:intron | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | + | chr1.4:20416581-20416600 | MS.gene052843:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1.4:20416947-20416966 | MS.gene052843:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1.4:20416976-20416995 | MS.gene052843:CDS | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1.4:20416332-20416351 | None:intergenic | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr1.4:20417436-20417455 | MS.gene052843:CDS | 40.0% | |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1.4:20416791-20416810 | None:intergenic | 40.0% |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1.4:20416654-20416673 | MS.gene052843:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1.4:20416666-20416685 | MS.gene052843:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1.4:20416780-20416799 | None:intergenic | 40.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1.4:20416341-20416360 | MS.gene052843:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1.4:20416350-20416369 | MS.gene052843:CDS | 45.0% | |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1.4:20416335-20416354 | MS.gene052843:intron | 45.0% | |
| GAGTGATGAGAGTTCAGATG+AGG | + | chr1.4:20415928-20415947 | MS.gene052843:CDS | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1.4:20415887-20415906 | MS.gene052843:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1.4:20417757-20417776 | MS.gene052843:CDS | 45.0% | |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1.4:20417647-20417666 | MS.gene052843:intron | 45.0% | |
| GTGTCCACCTTACACATTAG+AGG | - | chr1.4:20417590-20417609 | None:intergenic | 45.0% | |
| TACAGAAGGTCGTGATGTGA+AGG | + | chr1.4:20417394-20417413 | MS.gene052843:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1.4:20417753-20417772 | MS.gene052843:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1.4:20415962-20415981 | None:intergenic | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1.4:20417412-20417431 | MS.gene052843:CDS | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1.4:20416598-20416617 | MS.gene052843:CDS | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1.4:20416248-20416267 | MS.gene052843:intron | 5.0% |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1.4:20415797-20415816 | MS.gene052843:CDS | 50.0% |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1.4:20416612-20416631 | MS.gene052843:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20415351 | 20417905 | 20415351 | ID=MS.gene052843 |
| chr1.4 | mRNA | 20415351 | 20417905 | 20415351 | ID=MS.gene052843.t1;Parent=MS.gene052843 |
| chr1.4 | exon | 20415351 | 20415407 | 20415351 | ID=MS.gene052843.t1.exon1;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20415351 | 20415407 | 20415351 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| chr1.4 | exon | 20415527 | 20416004 | 20415527 | ID=MS.gene052843.t1.exon2;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20415527 | 20416004 | 20415527 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| chr1.4 | exon | 20416343 | 20416461 | 20416343 | ID=MS.gene052843.t1.exon3;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20416343 | 20416461 | 20416343 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| chr1.4 | exon | 20416536 | 20416809 | 20416536 | ID=MS.gene052843.t1.exon4;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20416536 | 20416809 | 20416536 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| chr1.4 | exon | 20416912 | 20416998 | 20416912 | ID=MS.gene052843.t1.exon5;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20416912 | 20416998 | 20416912 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| chr1.4 | exon | 20417399 | 20417457 | 20417399 | ID=MS.gene052843.t1.exon6;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20417399 | 20417457 | 20417399 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| chr1.4 | exon | 20417657 | 20417905 | 20417657 | ID=MS.gene052843.t1.exon7;Parent=MS.gene052843.t1 |
| chr1.4 | CDS | 20417657 | 20417905 | 20417657 | ID=cds.MS.gene052843.t1;Parent=MS.gene052843.t1 |
| Gene Sequence |
| Protein sequence |
