Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78641.t1 | XP_013467498.1 | 98.4 | 255 | 4 | 0 | 65 | 319 | 35 | 289 | 5.60E-134 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78641.t1 | Q9FL54 | 64.4 | 281 | 89 | 4 | 43 | 319 | 11 | 284 | 1.7e-91 | 337.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78641.t1 | A0A072VTU1 | 98.4 | 255 | 4 | 0 | 65 | 319 | 35 | 289 | 4.0e-134 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene78641 | 0.81246 | 4.19E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene78641 | 0.802482 | 5.50E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene78641 | 0.803946 | 2.74E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene78641 | 0.830985 | 2.16E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene78641 | 0.829589 | 4.73E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene78641 | 0.817572 | 3.08E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene78641 | 0.830748 | 2.47E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene78641 | 0.813276 | 2.78E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene78641 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene78641 | 0.802189 | 6.31E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene78641 | 0.825185 | 5.38E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene78641 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene78641 | 0.814487 | 1.50E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene78641 | 0.809424 | 1.90E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene78641 | 0.827036 | 1.95E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene78641 | 0.827295 | 1.69E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene78641 | 0.823783 | 1.15E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene78641 | -0.826831 | 2.19E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene78641 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene78641 | -0.822499 | 2.29E-53 | -1.69E-46 |
| MS.gene056215 | MS.gene78641 | 0.833003 | 6.84E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene78641 | 0.822614 | 2.16E-53 | -1.69E-46 |
| MS.gene059084 | MS.gene78641 | 0.823226 | 1.55E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene78641 | 0.80406 | 2.59E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene78641 | 0.82365 | 1.24E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene78641 | 0.833038 | 6.71E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene78641 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene78641 | 0.805902 | 1.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78641 | MS.gene057916 | PPI |
| MS.gene78641 | MS.gene50870 | PPI |
| MS.gene78641 | MS.gene95207 | PPI |
| MS.gene78641 | MS.gene51817 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78641.t1 | MTR_1g052110 | 94.681 | 282 | 9 | 2 | 41 | 319 | 11 | 289 | 0.0 | 541 |
| MS.gene78641.t1 | MTR_7g092380 | 77.358 | 265 | 47 | 2 | 44 | 308 | 10 | 261 | 6.51e-148 | 417 |
| MS.gene78641.t1 | MTR_7g109340 | 42.574 | 101 | 54 | 2 | 60 | 156 | 18 | 118 | 5.36e-16 | 77.8 |
| MS.gene78641.t1 | MTR_7g112360 | 49.296 | 71 | 31 | 3 | 70 | 136 | 18 | 87 | 6.08e-14 | 67.8 |
| MS.gene78641.t1 | MTR_3g027580 | 52.308 | 65 | 31 | 0 | 69 | 133 | 90 | 154 | 2.13e-13 | 70.9 |
| MS.gene78641.t1 | MTR_7g112360 | 50.769 | 65 | 28 | 2 | 70 | 130 | 18 | 82 | 2.68e-13 | 67.4 |
| MS.gene78641.t1 | MTR_2g014470 | 47.692 | 65 | 33 | 1 | 70 | 133 | 6 | 70 | 2.78e-13 | 70.1 |
| MS.gene78641.t1 | MTR_2g014480 | 42.697 | 89 | 44 | 3 | 70 | 154 | 6 | 91 | 3.43e-13 | 69.7 |
| MS.gene78641.t1 | MTR_4g078850 | 49.231 | 65 | 32 | 1 | 70 | 133 | 6 | 70 | 4.49e-13 | 69.3 |
| MS.gene78641.t1 | MTR_3g108020 | 46.154 | 65 | 34 | 1 | 70 | 133 | 6 | 70 | 6.00e-13 | 68.9 |
| MS.gene78641.t1 | MTR_7g069480 | 53.125 | 64 | 29 | 1 | 70 | 133 | 29 | 91 | 9.32e-13 | 68.9 |
| MS.gene78641.t1 | MTR_4g023470 | 53.030 | 66 | 31 | 0 | 68 | 133 | 86 | 151 | 1.11e-12 | 68.6 |
| MS.gene78641.t1 | MTR_3g087030 | 53.030 | 66 | 26 | 2 | 70 | 133 | 84 | 146 | 1.82e-12 | 68.2 |
| MS.gene78641.t1 | MTR_1g110310 | 37.963 | 108 | 61 | 2 | 58 | 159 | 6 | 113 | 2.31e-12 | 67.8 |
| MS.gene78641.t1 | MTR_1g105540 | 39.175 | 97 | 53 | 3 | 65 | 161 | 32 | 122 | 2.40e-12 | 67.0 |
| MS.gene78641.t1 | MTR_8g022310 | 42.697 | 89 | 40 | 3 | 57 | 139 | 3 | 86 | 2.92e-12 | 65.1 |
| MS.gene78641.t1 | MTR_8g022310 | 42.697 | 89 | 40 | 3 | 57 | 139 | 3 | 86 | 4.12e-12 | 64.7 |
| MS.gene78641.t1 | MTR_8g022310 | 42.697 | 89 | 40 | 3 | 57 | 139 | 3 | 86 | 4.36e-12 | 64.7 |
| MS.gene78641.t1 | MTR_2g090705 | 47.692 | 65 | 33 | 1 | 70 | 133 | 6 | 70 | 4.85e-12 | 66.2 |
| MS.gene78641.t1 | MTR_4g015840 | 44.615 | 65 | 35 | 1 | 70 | 133 | 6 | 70 | 1.32e-11 | 65.1 |
| MS.gene78641.t1 | MTR_5g035770 | 48.438 | 64 | 33 | 0 | 70 | 133 | 27 | 90 | 1.50e-11 | 65.1 |
| MS.gene78641.t1 | MTR_8g022310 | 42.697 | 89 | 40 | 3 | 57 | 139 | 3 | 86 | 1.58e-11 | 63.5 |
| MS.gene78641.t1 | MTR_6g027110 | 48.485 | 66 | 29 | 1 | 70 | 130 | 4 | 69 | 3.04e-11 | 60.8 |
| MS.gene78641.t1 | MTR_8g037810 | 38.462 | 91 | 53 | 1 | 66 | 156 | 4 | 91 | 3.35e-11 | 63.9 |
| MS.gene78641.t1 | MTR_2g104030 | 50.000 | 66 | 28 | 2 | 70 | 133 | 72 | 134 | 4.08e-11 | 63.9 |
| MS.gene78641.t1 | MTR_2g436560 | 44.444 | 72 | 35 | 2 | 70 | 139 | 106 | 174 | 7.12e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78641.t1 | AT3G12170 | 71.311 | 244 | 70 | 0 | 65 | 308 | 8 | 251 | 1.16e-130 | 373 |
| MS.gene78641.t1 | AT3G12170 | 71.311 | 244 | 70 | 0 | 65 | 308 | 44 | 287 | 1.83e-129 | 371 |
| MS.gene78641.t1 | AT5G06910 | 67.568 | 259 | 80 | 2 | 65 | 319 | 26 | 284 | 2.88e-115 | 335 |
| MS.gene78641.t1 | AT3G62600 | 53.030 | 66 | 31 | 0 | 68 | 133 | 26 | 91 | 1.42e-14 | 73.9 |
| MS.gene78641.t1 | AT1G56300 | 46.667 | 75 | 35 | 3 | 66 | 136 | 11 | 84 | 4.22e-14 | 68.2 |
| MS.gene78641.t1 | AT5G48030 | 56.250 | 64 | 28 | 0 | 70 | 133 | 96 | 159 | 5.08e-14 | 72.8 |
| MS.gene78641.t1 | AT1G56300 | 47.826 | 69 | 32 | 2 | 66 | 130 | 11 | 79 | 5.19e-14 | 68.9 |
| MS.gene78641.t1 | AT5G01390 | 48.485 | 66 | 33 | 1 | 69 | 133 | 5 | 70 | 7.25e-14 | 70.5 |
| MS.gene78641.t1 | AT5G01390 | 48.485 | 66 | 33 | 1 | 69 | 133 | 5 | 70 | 7.36e-14 | 70.5 |
| MS.gene78641.t1 | AT1G59980 | 50.000 | 64 | 32 | 0 | 70 | 133 | 25 | 88 | 1.51e-13 | 70.9 |
| MS.gene78641.t1 | AT5G01390 | 48.485 | 66 | 33 | 1 | 69 | 133 | 5 | 70 | 1.67e-13 | 70.1 |
| MS.gene78641.t1 | AT1G59980 | 42.169 | 83 | 48 | 0 | 51 | 133 | 6 | 88 | 2.01e-13 | 70.9 |
| MS.gene78641.t1 | AT5G03160 | 54.839 | 62 | 27 | 1 | 70 | 130 | 372 | 433 | 2.34e-13 | 70.9 |
| MS.gene78641.t1 | AT5G01390 | 48.485 | 66 | 33 | 1 | 69 | 133 | 5 | 70 | 2.43e-13 | 70.1 |
| MS.gene78641.t1 | AT2G21510 | 37.931 | 116 | 59 | 3 | 70 | 172 | 8 | 123 | 4.26e-13 | 69.7 |
| MS.gene78641.t1 | AT2G21510 | 37.931 | 116 | 59 | 3 | 70 | 172 | 8 | 123 | 4.26e-13 | 69.7 |
| MS.gene78641.t1 | AT2G21510 | 37.931 | 116 | 59 | 3 | 70 | 172 | 8 | 123 | 4.38e-13 | 69.7 |
| MS.gene78641.t1 | AT2G21510 | 37.931 | 116 | 59 | 3 | 70 | 172 | 8 | 123 | 4.38e-13 | 69.7 |
| MS.gene78641.t1 | AT4G39150 | 51.562 | 64 | 31 | 0 | 70 | 133 | 8 | 71 | 5.15e-13 | 69.3 |
| MS.gene78641.t1 | AT4G39150 | 51.562 | 64 | 31 | 0 | 70 | 133 | 8 | 71 | 5.15e-13 | 69.3 |
| MS.gene78641.t1 | AT4G39150 | 51.562 | 64 | 31 | 0 | 70 | 133 | 8 | 71 | 5.15e-13 | 69.3 |
| MS.gene78641.t1 | AT4G39960 | 46.988 | 83 | 40 | 2 | 69 | 151 | 86 | 164 | 6.02e-13 | 69.7 |
| MS.gene78641.t1 | AT4G39960 | 46.988 | 83 | 40 | 2 | 69 | 151 | 86 | 164 | 6.02e-13 | 69.7 |
| MS.gene78641.t1 | AT2G21510 | 37.931 | 116 | 59 | 3 | 70 | 172 | 8 | 123 | 6.47e-13 | 68.9 |
| MS.gene78641.t1 | AT1G68370 | 39.815 | 108 | 59 | 2 | 58 | 159 | 7 | 114 | 7.51e-13 | 68.9 |
| MS.gene78641.t1 | AT4G28480 | 47.692 | 65 | 33 | 1 | 70 | 133 | 6 | 70 | 8.48e-13 | 68.2 |
| MS.gene78641.t1 | AT3G08910 | 47.692 | 65 | 33 | 1 | 70 | 133 | 6 | 70 | 9.34e-13 | 68.2 |
| MS.gene78641.t1 | AT2G22360 | 44.565 | 92 | 43 | 3 | 70 | 156 | 88 | 176 | 9.69e-13 | 68.9 |
| MS.gene78641.t1 | AT4G28480 | 47.692 | 65 | 33 | 1 | 70 | 133 | 6 | 70 | 1.23e-12 | 68.2 |
| MS.gene78641.t1 | AT5G25530 | 47.692 | 65 | 33 | 1 | 70 | 133 | 6 | 70 | 1.64e-12 | 67.8 |
| MS.gene78641.t1 | AT3G14200 | 51.515 | 66 | 29 | 1 | 68 | 130 | 12 | 77 | 1.98e-12 | 66.2 |
| MS.gene78641.t1 | AT1G21080 | 47.059 | 68 | 36 | 0 | 66 | 133 | 4 | 71 | 6.87e-12 | 66.2 |
| MS.gene78641.t1 | AT1G21080 | 47.059 | 68 | 36 | 0 | 66 | 133 | 4 | 71 | 7.46e-12 | 66.2 |
| MS.gene78641.t1 | AT5G49060 | 44.000 | 75 | 37 | 2 | 67 | 139 | 98 | 169 | 7.53e-12 | 65.9 |
| MS.gene78641.t1 | AT5G49060 | 44.000 | 75 | 37 | 2 | 67 | 139 | 98 | 169 | 7.53e-12 | 65.9 |
| MS.gene78641.t1 | AT3G08970 | 53.125 | 64 | 29 | 1 | 70 | 133 | 29 | 91 | 9.06e-12 | 66.2 |
| MS.gene78641.t1 | AT3G08970 | 53.125 | 64 | 29 | 1 | 70 | 133 | 29 | 91 | 9.06e-12 | 66.2 |
| MS.gene78641.t1 | AT2G20560 | 44.615 | 65 | 35 | 1 | 70 | 133 | 6 | 70 | 1.06e-11 | 65.5 |
| MS.gene78641.t1 | AT1G59725 | 45.455 | 66 | 34 | 1 | 70 | 133 | 6 | 71 | 1.30e-11 | 65.1 |
| MS.gene78641.t1 | AT1G76700 | 50.000 | 64 | 32 | 0 | 70 | 133 | 8 | 71 | 1.38e-11 | 65.1 |
| MS.gene78641.t1 | AT1G28210 | 42.254 | 71 | 41 | 0 | 60 | 130 | 40 | 110 | 1.58e-11 | 65.1 |
| MS.gene78641.t1 | AT1G28210 | 42.254 | 71 | 41 | 0 | 60 | 130 | 40 | 110 | 1.79e-11 | 65.1 |
| MS.gene78641.t1 | AT1G28210 | 42.254 | 71 | 41 | 0 | 60 | 130 | 40 | 110 | 1.94e-11 | 65.1 |
| MS.gene78641.t1 | AT3G17830 | 48.684 | 76 | 31 | 3 | 70 | 143 | 65 | 134 | 6.60e-11 | 63.5 |
| MS.gene78641.t1 | AT5G16650 | 43.284 | 67 | 38 | 0 | 70 | 136 | 13 | 79 | 9.13e-11 | 59.3 |
Find 63 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTTATTATTAGGTTCT+TGG | 0.249667 | 1.4:+42263808 | MS.gene78641:intron |
| AGGAGTTTGAAGCAAATTAT+AGG | 0.268855 | 1.4:+42266176 | MS.gene78641:CDS |
| GGAGTTTGAAGCAAATTATA+GGG | 0.301735 | 1.4:+42266177 | MS.gene78641:CDS |
| GAATTCCTCTTCAGAGGGTT+CGG | 0.312967 | 1.4:-42266959 | None:intergenic |
| AATCGATGCGAGTCGAGTTT+AGG | 0.313518 | 1.4:-42266370 | None:intergenic |
| AAAAGAAAGCGTACAAGAAA+TGG | 0.336249 | 1.4:+42266676 | MS.gene78641:CDS |
| TCTGAAAACCAGGACCTTGC+AGG | 0.336660 | 1.4:+42265994 | MS.gene78641:intron |
| GAGTGCAATCATTTGGTTGC+AGG | 0.359240 | 1.4:+42262514 | MS.gene78641:CDS |
| TCATCACCAGGGTTCTTATC+AGG | 0.360923 | 1.4:-42263898 | None:intergenic |
| TTACCTGGTAGAGTGAGTTT+TGG | 0.362358 | 1.4:-42263717 | None:intergenic |
| TCGTCTCTAATCTCAAAATA+TGG | 0.366431 | 1.4:+42266922 | MS.gene78641:CDS |
| CTCTATAGAGTGCAATCATT+TGG | 0.376626 | 1.4:+42262507 | MS.gene78641:CDS |
| ACTCGACTCGCATCGATTCA+AGG | 0.376743 | 1.4:+42266375 | MS.gene78641:CDS |
| AAAGAAGGCGTATCACAAAT+TGG | 0.377076 | 1.4:+42263861 | MS.gene78641:CDS |
| CGGGCACTTTATGATGAAAC+TGG | 0.385964 | 1.4:+42265077 | MS.gene78641:CDS |
| ATTGATGAGGCTATAGCTTC+TGG | 0.387082 | 1.4:+42266403 | MS.gene78641:CDS |
| AATTCCTCTTCAGAGGGTTC+GGG | 0.389041 | 1.4:-42266958 | None:intergenic |
| CAAAATGTTATCTCCATTCT+CGG | 0.394188 | 1.4:+42265041 | MS.gene78641:CDS |
| AATCTTCTACAGATCAAGTA+AGG | 0.435909 | 1.4:+42266825 | MS.gene78641:intron |
| CTTCAGAGGGTTCGGGCACA+TGG | 0.444877 | 1.4:-42266951 | None:intergenic |
| AAAATGTTATCTCCATTCTC+GGG | 0.461779 | 1.4:+42265042 | MS.gene78641:CDS |
| TAAAGGACTAGTTGGCGGCT+TGG | 0.473285 | 1.4:-42266718 | None:intergenic |
| GGAACCTTCGTTGTTGTTGT+TGG | 0.485181 | 1.4:-42263680 | None:intergenic |
| TGATTTAATTAGACTTTACA+AGG | 0.489056 | 1.4:+42266219 | MS.gene78641:CDS |
| CTTCGTAAAGGACTAGTTGG+CGG | 0.491008 | 1.4:-42266723 | None:intergenic |
| TATATCTGCAGGAGAACTAA+AGG | 0.492660 | 1.4:+42266653 | MS.gene78641:intron |
| AAAGAAAGCGTACAAGAAAT+GGG | 0.493039 | 1.4:+42266677 | MS.gene78641:CDS |
| TTCCTTCGTAAAGGACTAGT+TGG | 0.496942 | 1.4:-42266726 | None:intergenic |
| CATGGAAGGTTGTAGCCACC+AGG | 0.503712 | 1.4:+42262475 | MS.gene78641:CDS |
| GCTTCGAATTCCTCTTCAGA+GGG | 0.517725 | 1.4:-42266964 | None:intergenic |
| CTGAACAGATGTCGGAGACA+TGG | 0.525332 | 1.4:+42262457 | MS.gene78641:CDS |
| CAAGTTGGTTACTTTCGCCT+AGG | 0.529009 | 1.4:-42267027 | None:intergenic |
| TTTCAGAACATTGTACAAGA+AGG | 0.533814 | 1.4:+42266044 | MS.gene78641:CDS |
| TAGACTTTACAAGGAATGCA+AGG | 0.538206 | 1.4:+42266228 | MS.gene78641:CDS |
| AGATTTGATTTCTTCATCGT+CGG | 0.538325 | 1.4:-42263653 | None:intergenic |
| AATGCAAGGGTAATATGAGC+AGG | 0.540983 | 1.4:+42266242 | MS.gene78641:CDS |
| ACGAGAACATAGAATCAAAC+CGG | 0.544920 | 1.4:-42266903 | None:intergenic |
| AAACCAAAACTCACTCTACC+AGG | 0.561284 | 1.4:+42263714 | MS.gene78641:CDS |
| AGCTTCGAATTCCTCTTCAG+AGG | 0.566300 | 1.4:-42266965 | None:intergenic |
| GGTCACTGAAGCTGATATTG+AGG | 0.567799 | 1.4:+42266156 | MS.gene78641:intron |
| GAGATGCTAACCTCATCACC+AGG | 0.571032 | 1.4:-42263910 | None:intergenic |
| ATTCAAGGATATTATTGATG+AGG | 0.571989 | 1.4:+42266390 | MS.gene78641:CDS |
| AACTAAACAAGAAATAAAGA+AGG | 0.573873 | 1.4:+42263846 | MS.gene78641:CDS |
| TCTCTAATCTCAAAATATGG+TGG | 0.580345 | 1.4:+42266925 | MS.gene78641:CDS |
| CAGTAGAACTGAACAGATGT+CGG | 0.584851 | 1.4:+42262449 | MS.gene78641:CDS |
| TTTGATTTCTTCATCGTCGG+AGG | 0.586096 | 1.4:-42263650 | None:intergenic |
| GACGAGATGAGAGGAAAGAC+CGG | 0.588828 | 1.4:+42266884 | MS.gene78641:CDS |
| TTATTATTAGGTTCTTGGTG+TGG | 0.593713 | 1.4:+42263813 | MS.gene78641:intron |
| TGTGCCCGAACCCTCTGAAG+AGG | 0.595257 | 1.4:+42266954 | MS.gene78641:CDS |
| AGACTTTACAAGGAATGCAA+GGG | 0.606865 | 1.4:+42266229 | MS.gene78641:CDS |
| TATCAAAACGACGAGATGAG+AGG | 0.612573 | 1.4:+42266875 | MS.gene78641:CDS |
| TGATAAGAACCCTGGTGATG+AGG | 0.614956 | 1.4:+42263900 | MS.gene78641:CDS |
| CAAAAGCAGACGAGTGATCG+AGG | 0.620369 | 1.4:+42262423 | MS.gene78641:CDS |
| GAGTTTGAAGCAAATTATAG+GGG | 0.620493 | 1.4:+42266178 | MS.gene78641:CDS |
| TCTATAGAGAACTCTAAACC+TGG | 0.633762 | 1.4:-42262493 | None:intergenic |
| ACAGATGTCGGAGACATGGA+AGG | 0.634424 | 1.4:+42262461 | MS.gene78641:CDS |
| AAATGTTATCTCCATTCTCG+GGG | 0.645657 | 1.4:+42265043 | MS.gene78641:CDS |
| CTTCATCCTGATAAGAACCC+TGG | 0.652291 | 1.4:+42263892 | MS.gene78641:CDS |
| CGCCAACTAGTCCTTTACGA+AGG | 0.677178 | 1.4:+42266724 | MS.gene78641:CDS |
| GATACCAACAACAACAACGA+AGG | 0.683092 | 1.4:+42263676 | MS.gene78641:CDS |
| TCTGAACTACATCTCCTGCA+AGG | 0.685642 | 1.4:-42266008 | None:intergenic |
| ATAGAGAACTCTAAACCTGG+TGG | 0.711062 | 1.4:-42262490 | None:intergenic |
| AGATGCTAACCTCATCACCA+GGG | 0.733377 | 1.4:-42263909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+TGG | + | chr1.4:42262611-42262630 | MS.gene78641:intron | 0.0% |
| !! | AAAAGTAATATTCATATATT+TGG | + | chr1.4:42263096-42263115 | MS.gene78641:intron | 10.0% |
| !! | AAAGTAATATTCATATATTT+GGG | + | chr1.4:42263097-42263116 | MS.gene78641:intron | 10.0% |
| !! | AATTAATTTAATTAATAACC+AGG | - | chr1.4:42263485-42263504 | None:intergenic | 10.0% |
| !! | TATGTGAATTATTTATTATT+AGG | + | chr1.4:42263801-42263820 | MS.gene78641:intron | 10.0% |
| !!! | AATTTTTTTTTTTGAAAACT+CGG | + | chr1.4:42264214-42264233 | MS.gene78641:intron | 10.0% |
| !!! | CTATTTTATCAAATTATTAT+TGG | + | chr1.4:42264072-42264091 | MS.gene78641:intron | 10.0% |
| !!! | TGTGTATATATTAAAATTTT+TGG | - | chr1.4:42262772-42262791 | None:intergenic | 10.0% |
| !! | ATTATTTATTATTAGGTTCT+TGG | + | chr1.4:42263808-42263827 | MS.gene78641:intron | 15.0% |
| !!! | AAATGTAGTTATATTTTGTT+AGG | - | chr1.4:42262915-42262934 | None:intergenic | 15.0% |
| !!! | ATACAATATGCTTTTTTTTA+GGG | - | chr1.4:42265176-42265195 | None:intergenic | 15.0% |
| !!! | TATACAATATGCTTTTTTTT+AGG | - | chr1.4:42265177-42265196 | None:intergenic | 15.0% |
| !!! | TTTCGTTTATTTTTTGTTAA+GGG | + | chr1.4:42264861-42264880 | MS.gene78641:intron | 15.0% |
| !! | AAAACAAAAAATAACCCATT+TGG | - | chr1.4:42264424-42264443 | None:intergenic | 20.0% |
| !! | AAACAAAAAATAACCCATTT+GGG | - | chr1.4:42264423-42264442 | None:intergenic | 20.0% |
| !! | AACTAAACAAGAAATAAAGA+AGG | + | chr1.4:42263846-42263865 | MS.gene78641:CDS | 20.0% |
| !! | AATTACTATTGTTAGCAATT+GGG | - | chr1.4:42263983-42264002 | None:intergenic | 20.0% |
| !! | ACATTTCAAATTAGAAAGTA+AGG | - | chr1.4:42265826-42265845 | None:intergenic | 20.0% |
| !! | AGAAGAAAAGAAAAGAAAAT+GGG | + | chr1.4:42263598-42263617 | MS.gene78641:intron | 20.0% |
| !! | ATTTAATTAATAACCAGGAT+TGG | - | chr1.4:42263480-42263499 | None:intergenic | 20.0% |
| !! | CAATTAACATCAAAATACTA+CGG | - | chr1.4:42264720-42264739 | None:intergenic | 20.0% |
| !! | TAATTACTATTGTTAGCAAT+TGG | - | chr1.4:42263984-42264003 | None:intergenic | 20.0% |
| !! | TATTCTGCATATTAATAGAT+AGG | + | chr1.4:42266584-42266603 | MS.gene78641:intron | 20.0% |
| !! | TCCAAAAAAATCAGTTTATT+TGG | + | chr1.4:42262549-42262568 | MS.gene78641:intron | 20.0% |
| !! | TGATTTAATTAGACTTTACA+AGG | + | chr1.4:42266219-42266238 | MS.gene78641:CDS | 20.0% |
| !! | TTTAATTAATAACCAGGATT+GGG | - | chr1.4:42263479-42263498 | None:intergenic | 20.0% |
| !!! | ACCAAATAAACTGATTTTTT+TGG | - | chr1.4:42262553-42262572 | None:intergenic | 20.0% |
| !!! | AGTGTTTCATTTTAATATTG+TGG | - | chr1.4:42264479-42264498 | None:intergenic | 20.0% |
| !!! | GTGTTTCATTTTAATATTGT+GGG | - | chr1.4:42264478-42264497 | None:intergenic | 20.0% |
| !!! | GTTTCGTTTATTTTTTGTTA+AGG | + | chr1.4:42264860-42264879 | MS.gene78641:intron | 20.0% |
| !!! | TAGAAAAATTGCTTTAAAAG+TGG | + | chr1.4:42263034-42263053 | MS.gene78641:intron | 20.0% |
| !!! | TTTTTTTTATATCAAAGGCA+AGG | + | chr1.4:42265587-42265606 | MS.gene78641:intron | 20.0% |
| ! | AAAATGTCATATTCTTGTAC+TGG | - | chr1.4:42264189-42264208 | None:intergenic | 25.0% |
| ! | AAATGTCAAAATTGCTAGAT+CGG | - | chr1.4:42263283-42263302 | None:intergenic | 25.0% |
| ! | AACAAAAAATAACCCATTTG+GGG | - | chr1.4:42264422-42264441 | None:intergenic | 25.0% |
| ! | AATATTTCACTTCTGTTTGA+TGG | + | chr1.4:42266609-42266628 | MS.gene78641:intron | 25.0% |
| ! | AGAAAATTCATACACATAAG+TGG | + | chr1.4:42263226-42263245 | MS.gene78641:intron | 25.0% |
| ! | ATGATCAAATATTGAAGCTT+GGG | + | chr1.4:42265306-42265325 | MS.gene78641:intron | 25.0% |
| ! | ATGTTAATTGTAACACCTTA+TGG | + | chr1.4:42264730-42264749 | MS.gene78641:intron | 25.0% |
| ! | ATTCAAGGATATTATTGATG+AGG | + | chr1.4:42266390-42266409 | MS.gene78641:CDS | 25.0% |
| ! | CAGAAGAAAAGAAAAGAAAA+TGG | + | chr1.4:42263597-42263616 | MS.gene78641:intron | 25.0% |
| ! | CTAAGAATAGAAGAAAATGT+TGG | + | chr1.4:42265732-42265751 | MS.gene78641:intron | 25.0% |
| ! | TATCAGTGAAAATAACCATA+AGG | - | chr1.4:42264748-42264767 | None:intergenic | 25.0% |
| ! | TATGAGTAAGTACACATTAT+GGG | + | chr1.4:42264522-42264541 | MS.gene78641:intron | 25.0% |
| !! | TCTTTTATATTAGTGATAGC+TGG | - | chr1.4:42266485-42266504 | None:intergenic | 25.0% |
| !! | TTTTTAACAGATCATGTATC+TGG | + | chr1.4:42265493-42265512 | MS.gene78641:intron | 25.0% |
| !!! | ATTTTGTTCAATGCTTTGTT+CGG | + | chr1.4:42266345-42266364 | MS.gene78641:CDS | 25.0% |
| !!! | CAATTTTGACATTTTGAAGT+AGG | + | chr1.4:42263289-42263308 | MS.gene78641:intron | 25.0% |
| AAAATGTTATCTCCATTCTC+GGG | + | chr1.4:42265042-42265061 | MS.gene78641:CDS | 30.0% | |
| AAAGTCATTATACAAGGGTT+TGG | - | chr1.4:42265153-42265172 | None:intergenic | 30.0% | |
| AAATTCATACACATAAGTGG+AGG | + | chr1.4:42263229-42263248 | MS.gene78641:intron | 30.0% | |
| AATATTGTGGGTGAAAATTG+TGG | - | chr1.4:42264466-42264485 | None:intergenic | 30.0% | |
| AATCTTCTACAGATCAAGTA+AGG | + | chr1.4:42266825-42266844 | MS.gene78641:intron | 30.0% | |
| AATGTAGCTACATAACAAGT+TGG | - | chr1.4:42264043-42264062 | None:intergenic | 30.0% | |
| AATGTGTACTTACTCATACT+GGG | - | chr1.4:42264520-42264539 | None:intergenic | 30.0% | |
| ACTTTGCAATTTGTGCTAAT+AGG | + | chr1.4:42266135-42266154 | MS.gene78641:intron | 30.0% | |
| ATGTTACATAGGTACAGTTA+CGG | + | chr1.4:42264143-42264162 | MS.gene78641:intron | 30.0% | |
| ATTTCGAATCATAACGTTTG+AGG | + | chr1.4:42262715-42262734 | MS.gene78641:intron | 30.0% | |
| CAAAATGTTATCTCCATTCT+CGG | + | chr1.4:42265041-42265060 | MS.gene78641:CDS | 30.0% | |
| CGGAATATCAAATTCAAAAC+TGG | - | chr1.4:42266314-42266333 | None:intergenic | 30.0% | |
| GATGATCAAATATTGAAGCT+TGG | + | chr1.4:42265305-42265324 | MS.gene78641:intron | 30.0% | |
| GTATGAGTAAGTACACATTA+TGG | + | chr1.4:42264521-42264540 | MS.gene78641:intron | 30.0% | |
| GTGTTAACATATTAAGTTCC+TGG | - | chr1.4:42265452-42265471 | None:intergenic | 30.0% | |
| GTTTATAGAAATACGAAGCA+AGG | - | chr1.4:42265804-42265823 | None:intergenic | 30.0% | |
| TAACTGTACCTATGTAACAT+AGG | - | chr1.4:42264143-42264162 | None:intergenic | 30.0% | |
| TAAGTTTATCAAGCAGAGTT+TGG | + | chr1.4:42266756-42266775 | MS.gene78641:intron | 30.0% | |
| TAATGTGTACTTACTCATAC+TGG | - | chr1.4:42264521-42264540 | None:intergenic | 30.0% | |
| TAGACAGTAGTGTATGTTAT+TGG | + | chr1.4:42265631-42265650 | MS.gene78641:intron | 30.0% | |
| TAGGGAAAGTCATTATACAA+GGG | - | chr1.4:42265158-42265177 | None:intergenic | 30.0% | |
| TCACCAAGTTCAAAAGAAAA+TGG | + | chr1.4:42266533-42266552 | MS.gene78641:intron | 30.0% | |
| TCGTCTCTAATCTCAAAATA+TGG | + | chr1.4:42266922-42266941 | MS.gene78641:CDS | 30.0% | |
| TCTCTAATCTCAAAATATGG+TGG | + | chr1.4:42266925-42266944 | MS.gene78641:CDS | 30.0% | |
| TCTTTAATGTCAAAACCTCT+CGG | + | chr1.4:42262981-42263000 | MS.gene78641:intron | 30.0% | |
| TGTTATTGGCACTTTAATGT+AGG | + | chr1.4:42266782-42266801 | MS.gene78641:intron | 30.0% | |
| TTAGGGAAAGTCATTATACA+AGG | - | chr1.4:42265159-42265178 | None:intergenic | 30.0% | |
| TTATTATTAGGTTCTTGGTG+TGG | + | chr1.4:42263813-42263832 | MS.gene78641:intron | 30.0% | |
| TTTATATCAAAGGCAAGGTA+GGG | + | chr1.4:42265592-42265611 | MS.gene78641:intron | 30.0% | |
| TTTCAGAACATTGTACAAGA+AGG | + | chr1.4:42266044-42266063 | MS.gene78641:CDS | 30.0% | |
| TTTCGAATCATAACGTTTGA+GGG | + | chr1.4:42262716-42262735 | MS.gene78641:intron | 30.0% | |
| ! | AAAAGAAAGCGTACAAGAAA+TGG | + | chr1.4:42266676-42266695 | MS.gene78641:CDS | 30.0% |
| ! | AAAGAAAGCGTACAAGAAAT+GGG | + | chr1.4:42266677-42266696 | MS.gene78641:CDS | 30.0% |
| ! | AGATTTGATTTCTTCATCGT+CGG | - | chr1.4:42263656-42263675 | None:intergenic | 30.0% |
| ! | AGGAGTTTGAAGCAAATTAT+AGG | + | chr1.4:42266176-42266195 | MS.gene78641:CDS | 30.0% |
| ! | ATAGCATACAGATCTGTTTT+TGG | - | chr1.4:42266853-42266872 | None:intergenic | 30.0% |
| ! | ATGTTTAGATCTTTTTGCTC+TGG | + | chr1.4:42265842-42265861 | MS.gene78641:intron | 30.0% |
| ! | ATTTTGCAATTGCTGAAACT+TGG | - | chr1.4:42265027-42265046 | None:intergenic | 30.0% |
| ! | CTTCCATTTTCTTTTGAACT+TGG | - | chr1.4:42266539-42266558 | None:intergenic | 30.0% |
| ! | GAAATGTTAAAGTACTTACC+TGG | - | chr1.4:42263735-42263754 | None:intergenic | 30.0% |
| ! | GAACGAAATATTGTCATTTC+AGG | + | chr1.4:42265916-42265935 | MS.gene78641:intron | 30.0% |
| ! | GAGTTTGAAGCAAATTATAG+GGG | + | chr1.4:42266178-42266197 | MS.gene78641:CDS | 30.0% |
| ! | GGAGTTTGAAGCAAATTATA+GGG | + | chr1.4:42266177-42266196 | MS.gene78641:CDS | 30.0% |
| ! | TACAAGGGTTTGGTTATATT+TGG | - | chr1.4:42265143-42265162 | None:intergenic | 30.0% |
| ! | TTTAGTGTCTCTGTCAATTT+TGG | + | chr1.4:42264102-42264121 | MS.gene78641:intron | 30.0% |
| ! | TTTTATATCAAAGGCAAGGT+AGG | + | chr1.4:42265591-42265610 | MS.gene78641:intron | 30.0% |
| !! | AATTTTGGTACCTGTTTGTT+AGG | + | chr1.4:42264117-42264136 | MS.gene78641:intron | 30.0% |
| !! | AGAATATTTCTAGCTTTCGT+TGG | + | chr1.4:42266428-42266447 | MS.gene78641:intron | 30.0% |
| !! | CGTATTTATTTCTGAAAACC+AGG | + | chr1.4:42265984-42266003 | MS.gene78641:intron | 30.0% |
| !! | GTTACTGTAATTTTAGGTCT+CGG | + | chr1.4:42263947-42263966 | MS.gene78641:intron | 30.0% |
| !! | TTACTGTAATTTTAGGTCTC+GGG | + | chr1.4:42263948-42263967 | MS.gene78641:intron | 30.0% |
| !!! | TAAAACCCGGCTTTTTTTTA+GGG | + | chr1.4:42266285-42266304 | MS.gene78641:intron | 30.0% |
| AAATGTTATCTCCATTCTCG+GGG | + | chr1.4:42265043-42265062 | MS.gene78641:CDS | 35.0% | |
| AATTTGATATTCCGCTTTGC+AGG | + | chr1.4:42266320-42266339 | MS.gene78641:intron | 35.0% | |
| ACGAGAACATAGAATCAAAC+CGG | - | chr1.4:42266906-42266925 | None:intergenic | 35.0% | |
| AGACTTTACAAGGAATGCAA+GGG | + | chr1.4:42266229-42266248 | MS.gene78641:CDS | 35.0% | |
| AGAGTAAGAAGAAGAGAAGT+AGG | + | chr1.4:42263623-42263642 | MS.gene78641:intron | 35.0% | |
| CATCAAAATACTACGGTTAC+AGG | - | chr1.4:42264713-42264732 | None:intergenic | 35.0% | |
| CTCTATAGAGTGCAATCATT+TGG | + | chr1.4:42262507-42262526 | MS.gene78641:CDS | 35.0% | |
| CTGGTCATGACAATTAAAAC+TGG | + | chr1.4:42265512-42265531 | MS.gene78641:intron | 35.0% | |
| GAACAAAATAACCTGCAAAG+CGG | - | chr1.4:42266334-42266353 | None:intergenic | 35.0% | |
| GAGTAAGAAGAAGAGAAGTA+GGG | + | chr1.4:42263624-42263643 | MS.gene78641:intron | 35.0% | |
| TAGACTTTACAAGGAATGCA+AGG | + | chr1.4:42266228-42266247 | MS.gene78641:CDS | 35.0% | |
| TATATCTGCAGGAGAACTAA+AGG | + | chr1.4:42266653-42266672 | MS.gene78641:intron | 35.0% | |
| TCGCAAACAAAGAAACACTT+TGG | - | chr1.4:42264834-42264853 | None:intergenic | 35.0% | |
| TCTATAGAGAACTCTAAACC+TGG | - | chr1.4:42262496-42262515 | None:intergenic | 35.0% | |
| TGCTCTGGTAACTTTAGTTA+AGG | + | chr1.4:42265857-42265876 | MS.gene78641:intron | 35.0% | |
| TGGAATCCCTAAAAAAAAGC+CGG | - | chr1.4:42266294-42266313 | None:intergenic | 35.0% | |
| TTGTTAGGCCTATGTTACAT+AGG | + | chr1.4:42264132-42264151 | MS.gene78641:intron | 35.0% | |
| ! | AAAAATAACCCATTTGGGGT+TGG | - | chr1.4:42264418-42264437 | None:intergenic | 35.0% |
| ! | AAAGAAGGCGTATCACAAAT+TGG | + | chr1.4:42263861-42263880 | MS.gene78641:CDS | 35.0% |
| ! | AAGGGTTTGGTTATATTTGG+AGG | - | chr1.4:42265140-42265159 | None:intergenic | 35.0% |
| ! | AGATTAGTCGATTCTTGGAT+CGG | - | chr1.4:42264243-42264262 | None:intergenic | 35.0% |
| ! | GTGTATGTTATTGGTTGAGT+TGG | + | chr1.4:42265640-42265659 | MS.gene78641:intron | 35.0% |
| ! | TACTTTTGCTTCCTTCGTAA+AGG | - | chr1.4:42266738-42266757 | None:intergenic | 35.0% |
| ! | TGCTGCGTTACTGTAATTTT+AGG | + | chr1.4:42263941-42263960 | MS.gene78641:intron | 35.0% |
| ! | TTGTTCCTTGTTTCATTTGC+AGG | + | chr1.4:42264992-42265011 | MS.gene78641:intron | 35.0% |
| !! | ACTAAGTTCTAAAGCTGTGT+TGG | + | chr1.4:42265366-42265385 | MS.gene78641:intron | 35.0% |
| !! | ATGTTATTGGTTGAGTTGGT+TGG | + | chr1.4:42265644-42265663 | MS.gene78641:intron | 35.0% |
| !! | CTAAAGCTGTGTTGGTATTT+TGG | + | chr1.4:42265374-42265393 | MS.gene78641:intron | 35.0% |
| !! | CTACATAACAAGTTGGTCTA+GGG | - | chr1.4:42264036-42264055 | None:intergenic | 35.0% |
| !! | GAGAGGTTTTGACATTAAAG+AGG | - | chr1.4:42262982-42263001 | None:intergenic | 35.0% |
| !! | GCATTTTGATGAGTAAAACC+CGG | + | chr1.4:42266272-42266291 | MS.gene78641:intron | 35.0% |
| !! | TGTGTCATAGTGTTGATACA+AGG | + | chr1.4:42265283-42265302 | MS.gene78641:intron | 35.0% |
| !! | TTTAGTTCTCCTGCAGATAT+AGG | - | chr1.4:42266654-42266673 | None:intergenic | 35.0% |
| !!! | AGGATATTTTAGCATTGTCC+TGG | + | chr1.4:42265936-42265955 | MS.gene78641:intron | 35.0% |
| !!! | GAGTGAGTTTTGGTTTTGAT+CGG | - | chr1.4:42263710-42263729 | None:intergenic | 35.0% |
| !!! | GTAAAACCCGGCTTTTTTTT+AGG | + | chr1.4:42266284-42266303 | MS.gene78641:intron | 35.0% |
| !!! | GTCATCATTGTTGGTTTTTC+TGG | + | chr1.4:42265705-42265724 | MS.gene78641:intron | 35.0% |
| !!! | GTTTTGGTTTTGATCGGAAA+TGG | - | chr1.4:42263704-42263723 | None:intergenic | 35.0% |
| !!! | TAGGCTTTTTTGAGGATCTT+CGG | - | chr1.4:42267011-42267030 | None:intergenic | 35.0% |
| AAACCAAAACTCACTCTACC+AGG | + | chr1.4:42263714-42263733 | MS.gene78641:CDS | 40.0% | |
| AAGCATGGGTACTTGTGAAA+AGG | - | chr1.4:42264555-42264574 | None:intergenic | 40.0% | |
| AATGCAAGGGTAATATGAGC+AGG | + | chr1.4:42266242-42266261 | MS.gene78641:CDS | 40.0% | |
| ACATAGATCTATTCACCGAG+AGG | - | chr1.4:42262999-42263018 | None:intergenic | 40.0% | |
| AGCTTCCTGCAAATGAAACA+AGG | - | chr1.4:42265000-42265019 | None:intergenic | 40.0% | |
| AGGCATACTTGTACGCAATT+CGG | + | chr1.4:42264806-42264825 | MS.gene78641:intron | 40.0% | |
| ATAGAGAACTCTAAACCTGG+TGG | - | chr1.4:42262493-42262512 | None:intergenic | 40.0% | |
| ATGCCTACATCTCTGAGTAT+AGG | - | chr1.4:42264792-42264811 | None:intergenic | 40.0% | |
| CAAGAATCGACTAATCTGAG+GGG | + | chr1.4:42264246-42264265 | MS.gene78641:intron | 40.0% | |
| CAGTAGAACTGAACAGATGT+CGG | + | chr1.4:42262449-42262468 | MS.gene78641:CDS | 40.0% | |
| CCAAGAATCGACTAATCTGA+GGG | + | chr1.4:42264245-42264264 | MS.gene78641:intron | 40.0% | |
| CGAAGCTACACAGAAAAAGA+TGG | + | chr1.4:42266981-42267000 | MS.gene78641:CDS | 40.0% | |
| GAAGATCCTCAAAAAAGCCT+AGG | + | chr1.4:42267010-42267029 | MS.gene78641:CDS | 40.0% | |
| GATACCAACAACAACAACGA+AGG | + | chr1.4:42263676-42263695 | MS.gene78641:CDS | 40.0% | |
| GCTCCCAAAAACAAACATCA+GGG | - | chr1.4:42264631-42264650 | None:intergenic | 40.0% | |
| GGAATCCCTAAAAAAAAGCC+GGG | - | chr1.4:42266293-42266312 | None:intergenic | 40.0% | |
| GTAACATAGGCCTAACAAAC+AGG | - | chr1.4:42264130-42264149 | None:intergenic | 40.0% | |
| TATCAAAACGACGAGATGAG+AGG | + | chr1.4:42266875-42266894 | MS.gene78641:CDS | 40.0% | |
| TCCAAGAATCGACTAATCTG+AGG | + | chr1.4:42264244-42264263 | MS.gene78641:intron | 40.0% | |
| TGAAAACAATGCAACAAGCC+AGG | + | chr1.4:42265431-42265450 | MS.gene78641:intron | 40.0% | |
| TGCCTACATCTCTGAGTATA+GGG | - | chr1.4:42264791-42264810 | None:intergenic | 40.0% | |
| TTCTCGGGGATGAAGAAAAA+CGG | + | chr1.4:42265057-42265076 | MS.gene78641:CDS | 40.0% | |
| ! | ATTCCCTCTGGTGTCAATTT+CGG | - | chr1.4:42264341-42264360 | None:intergenic | 40.0% |
| ! | CTTCAAAGGTTCTGACAAGT+GGG | + | chr1.4:42264572-42264591 | MS.gene78641:intron | 40.0% |
| ! | TTACCTGGTAGAGTGAGTTT+TGG | - | chr1.4:42263720-42263739 | None:intergenic | 40.0% |
| ! | TTCCTTCGTAAAGGACTAGT+TGG | - | chr1.4:42266729-42266748 | None:intergenic | 40.0% |
| ! | TTTGATTTCTTCATCGTCGG+AGG | - | chr1.4:42263653-42263672 | None:intergenic | 40.0% |
| ! | TTTTTCTTCATCCCCGAGAA+TGG | - | chr1.4:42265057-42265076 | None:intergenic | 40.0% |
| !! | AAGCTTGCTCTGGCTTTAAA+CGG | - | chr1.4:42264301-42264320 | None:intergenic | 40.0% |
| !! | GCAGAGTTTGGCTTTGTTAT+TGG | + | chr1.4:42266768-42266787 | MS.gene78641:intron | 40.0% |
| !! | GCTACATAACAAGTTGGTCT+AGG | - | chr1.4:42264037-42264056 | None:intergenic | 40.0% |
| !! | GCTTGTTTTCCTATATCTGC+AGG | + | chr1.4:42266642-42266661 | MS.gene78641:intron | 40.0% |
| !! | TGAGTTGGTTGGTTGTGAAA+GGG | + | chr1.4:42265655-42265674 | MS.gene78641:intron | 40.0% |
| !! | TGGCCCTGATGTTTGTTTTT+GGG | + | chr1.4:42264625-42264644 | MS.gene78641:intron | 40.0% |
| !! | TGTCAGAACCTTTGAAGCAT+GGG | - | chr1.4:42264569-42264588 | None:intergenic | 40.0% |
| !! | TTGAGTTGGTTGGTTGTGAA+AGG | + | chr1.4:42265654-42265673 | MS.gene78641:intron | 40.0% |
| !! | TTGGCCCTGATGTTTGTTTT+TGG | + | chr1.4:42264624-42264643 | MS.gene78641:intron | 40.0% |
| !! | TTGTCAGAACCTTTGAAGCA+TGG | - | chr1.4:42264570-42264589 | None:intergenic | 40.0% |
| AAAACCCTTGAACCGTACCA+TGG | - | chr1.4:42264679-42264698 | None:intergenic | 45.0% | |
| AAAATGCAGCTCAAGTGGTG+TGG | - | chr1.4:42264948-42264967 | None:intergenic | 45.0% | |
| AAACCCTTGAACCGTACCAT+GGG | - | chr1.4:42264678-42264697 | None:intergenic | 45.0% | |
| AAGATCCCAAGCCAACCATT+AGG | + | chr1.4:42264392-42264411 | MS.gene78641:intron | 45.0% | |
| AAGGCGGGAAGAAATTGAGT+TGG | + | chr1.4:42263449-42263468 | MS.gene78641:intron | 45.0% | |
| AATCGATGCGAGTCGAGTTT+AGG | - | chr1.4:42266373-42266392 | None:intergenic | 45.0% | |
| AATTCCTCTTCAGAGGGTTC+GGG | - | chr1.4:42266961-42266980 | None:intergenic | 45.0% | |
| ACACCTGACAGAGTTTGACA+AGG | - | chr1.4:42264915-42264934 | None:intergenic | 45.0% | |
| ACCACAAAATGCAGCTCAAG+TGG | - | chr1.4:42264953-42264972 | None:intergenic | 45.0% | |
| ACCGAGAACAAGCGTATACA+AGG | - | chr1.4:42266108-42266127 | None:intergenic | 45.0% | |
| ACCTGACAGAGTTTGACAAG+GGG | - | chr1.4:42264913-42264932 | None:intergenic | 45.0% | |
| ACTCATACTGGGTACGAGTA+CGG | - | chr1.4:42264509-42264528 | None:intergenic | 45.0% | |
| AGATGCTAACCTCATCACCA+GGG | - | chr1.4:42263912-42263931 | None:intergenic | 45.0% | |
| AGATTTGCAGCAGAACGTGA+CGG | + | chr1.4:42263400-42263419 | MS.gene78641:intron | 45.0% | |
| AGCTTCGAATTCCTCTTCAG+AGG | - | chr1.4:42266968-42266987 | None:intergenic | 45.0% | |
| AGTTTGACAAGGGGGCTATA+AGG | - | chr1.4:42264904-42264923 | None:intergenic | 45.0% | |
| CAACAATGATGACCCTCCAT+AGG | - | chr1.4:42265698-42265717 | None:intergenic | 45.0% | |
| CACAAGTACCCATGCTTCAA+AGG | + | chr1.4:42264558-42264577 | MS.gene78641:intron | 45.0% | |
| CACCTGACAGAGTTTGACAA+GGG | - | chr1.4:42264914-42264933 | None:intergenic | 45.0% | |
| CGCTCCCAAAAACAAACATC+AGG | - | chr1.4:42264632-42264651 | None:intergenic | 45.0% | |
| CGGGCACTTTATGATGAAAC+TGG | + | chr1.4:42265077-42265096 | MS.gene78641:CDS | 45.0% | |
| CTATGGAGGGTCATCATTGT+TGG | + | chr1.4:42265696-42265715 | MS.gene78641:intron | 45.0% | |
| CTTCATCCTGATAAGAACCC+TGG | + | chr1.4:42263892-42263911 | MS.gene78641:CDS | 45.0% | |
| GAATTCCTCTTCAGAGGGTT+CGG | - | chr1.4:42266962-42266981 | None:intergenic | 45.0% | |
| GAGTGCAATCATTTGGTTGC+AGG | + | chr1.4:42262514-42262533 | MS.gene78641:CDS | 45.0% | |
| GCCTTGTATACGCTTGTTCT+CGG | + | chr1.4:42266104-42266123 | MS.gene78641:intron | 45.0% | |
| GCTTCGAATTCCTCTTCAGA+GGG | - | chr1.4:42266967-42266986 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | + | chr1.4:42266156-42266175 | MS.gene78641:intron | 45.0% | |
| GTCCCTATACTCAGAGATGT+AGG | + | chr1.4:42264786-42264805 | MS.gene78641:intron | 45.0% | |
| TCAAAGGCAAGGTAGGGAAA+AGG | + | chr1.4:42265598-42265617 | MS.gene78641:intron | 45.0% | |
| TCATCACCAGGGTTCTTATC+AGG | - | chr1.4:42263901-42263920 | None:intergenic | 45.0% | |
| TCTCGGGGATGAAGAAAAAC+GGG | + | chr1.4:42265058-42265077 | MS.gene78641:CDS | 45.0% | |
| TCTGAACTACATCTCCTGCA+AGG | - | chr1.4:42266011-42266030 | None:intergenic | 45.0% | |
| TTAATAGCTGCTGTTGTGCG+CGG | + | chr1.4:42262810-42262829 | MS.gene78641:intron | 45.0% | |
| ! | AAGCCAGAGCAAGCTTTGTA+TGG | + | chr1.4:42264305-42264324 | MS.gene78641:intron | 45.0% |
| ! | ACAAGCGTATACAAGGCACT+AGG | - | chr1.4:42266101-42266120 | None:intergenic | 45.0% |
| ! | ACCACTTGAGCTGCATTTTG+TGG | + | chr1.4:42264949-42264968 | MS.gene78641:intron | 45.0% |
| ! | AGTCCATACAAAGCTTGCTC+TGG | - | chr1.4:42264311-42264330 | None:intergenic | 45.0% |
| ! | CCCTCAGATTAGTCGATTCT+TGG | - | chr1.4:42264248-42264267 | None:intergenic | 45.0% |
| ! | GCTTCAAAGGTTCTGACAAG+TGG | + | chr1.4:42264571-42264590 | MS.gene78641:intron | 45.0% |
| ! | GGAACCTTCGTTGTTGTTGT+TGG | - | chr1.4:42263683-42263702 | None:intergenic | 45.0% |
| ! | TGATAAGAACCCTGGTGATG+AGG | + | chr1.4:42263900-42263919 | MS.gene78641:CDS | 45.0% |
| !! | AGCTTGCTCTGGCTTTAAAC+GGG | - | chr1.4:42264300-42264319 | None:intergenic | 45.0% |
| !! | CTTCGTAAAGGACTAGTTGG+CGG | - | chr1.4:42266726-42266745 | None:intergenic | 45.0% |
| !! | TAATGGTTGGCTTGGGATCT+TGG | - | chr1.4:42264393-42264412 | None:intergenic | 45.0% |
| !!! | CTTTCGCCTAGGCTTTTTTG+AGG | - | chr1.4:42267019-42267038 | None:intergenic | 45.0% |
| !!! | GTTTGTTTTTGGGAGCGAGT+GGG | + | chr1.4:42264635-42264654 | MS.gene78641:intron | 45.0% |
| !!! | TGTTTGTTTTTGGGAGCGAG+TGG | + | chr1.4:42264634-42264653 | MS.gene78641:intron | 45.0% |
| !!! | TTTGTTTTTGGGAGCGAGTG+GGG | + | chr1.4:42264636-42264655 | MS.gene78641:intron | 45.0% |
| !!! | TTTATTTTTTTTTATATCAA+AGG | + | chr1.4:42265582-42265601 | MS.gene78641:intron | 5.0% |
| !!! | TTTTTTTATCTTTATAAATA+TGG | - | chr1.4:42262883-42262902 | None:intergenic | 5.0% |
| AACCCTTGAACCGTACCATG+GGG | - | chr1.4:42264677-42264696 | None:intergenic | 50.0% | |
| ACAGATGTCGGAGACATGGA+AGG | + | chr1.4:42262461-42262480 | MS.gene78641:CDS | 50.0% | |
| ACCATTAGGCCAACCCCAAA+TGG | + | chr1.4:42264406-42264425 | MS.gene78641:intron | 50.0% | |
| AGAGTGATGGCAGAAGCGAA+AGG | + | chr1.4:42263430-42263449 | MS.gene78641:intron | 50.0% | |
| ATCGAACCTGAGACCTTTGG+AGG | + | chr1.4:42264359-42264378 | MS.gene78641:intron | 50.0% | |
| CAAAAGCAGACGAGTGATCG+AGG | + | chr1.4:42262423-42262442 | MS.gene78641:CDS | 50.0% | |
| CATAGGATCAGCACCTACCA+AGG | - | chr1.4:42265681-42265700 | None:intergenic | 50.0% | |
| CCACCGAAATTGACACCAGA+GGG | + | chr1.4:42264335-42264354 | MS.gene78641:intron | 50.0% | |
| CCATTAGGCCAACCCCAAAT+GGG | + | chr1.4:42264407-42264426 | MS.gene78641:intron | 50.0% | |
| CCTGACAGAGTTTGACAAGG+GGG | - | chr1.4:42264912-42264931 | None:intergenic | 50.0% | |
| CGCCAACTAGTCCTTTACGA+AGG | + | chr1.4:42266724-42266743 | MS.gene78641:CDS | 50.0% | |
| CTGAACAGATGTCGGAGACA+TGG | + | chr1.4:42262457-42262476 | MS.gene78641:CDS | 50.0% | |
| CTGAGCTGTCAACAATGTCC+AGG | - | chr1.4:42265957-42265976 | None:intergenic | 50.0% | |
| GACGAGATGAGAGGAAAGAC+CGG | + | chr1.4:42266884-42266903 | MS.gene78641:CDS | 50.0% | |
| GAGATGCTAACCTCATCACC+AGG | - | chr1.4:42263913-42263932 | None:intergenic | 50.0% | |
| GGAATCGAACCTGAGACCTT+TGG | + | chr1.4:42264356-42264375 | MS.gene78641:intron | 50.0% | |
| TCTGAAAACCAGGACCTTGC+AGG | + | chr1.4:42265994-42266013 | MS.gene78641:intron | 50.0% | |
| TTTGCTCCTCCAAAGGTCTC+AGG | - | chr1.4:42264368-42264387 | None:intergenic | 50.0% | |
| ! | AAAGGTTCTGACAAGTGGGC+AGG | + | chr1.4:42264576-42264595 | MS.gene78641:intron | 50.0% |
| ! | AAGGTTCTGACAAGTGGGCA+GGG | + | chr1.4:42264577-42264596 | MS.gene78641:intron | 50.0% |
| ! | CCTCTGGTGTCAATTTCGGT+GGG | - | chr1.4:42264337-42264356 | None:intergenic | 50.0% |
| ! | CTTGGAGTTTGCTCCTCCAA+AGG | - | chr1.4:42264375-42264394 | None:intergenic | 50.0% |
| !! | ACTCGACTCGCATCGATTCA+AGG | + | chr1.4:42266375-42266394 | MS.gene78641:CDS | 50.0% |
| !! | CTTGGTAGGTGCTGATCCTA+TGG | + | chr1.4:42265679-42265698 | MS.gene78641:intron | 50.0% |
| !! | GCTTGCTCTGGCTTTAAACG+GGG | - | chr1.4:42264299-42264318 | None:intergenic | 50.0% |
| !! | GTAGGTGCTGATCCTATGGA+GGG | + | chr1.4:42265683-42265702 | MS.gene78641:intron | 50.0% |
| !! | GTTGGCCTAATGGTTGGCTT+GGG | - | chr1.4:42264400-42264419 | None:intergenic | 50.0% |
| !! | TAAAGGACTAGTTGGCGGCT+TGG | - | chr1.4:42266721-42266740 | None:intergenic | 50.0% |
| !! | TTTGGGGTTGGCCTAATGGT+TGG | - | chr1.4:42264406-42264425 | None:intergenic | 50.0% |
| ACCCTTGAACCGTACCATGG+GGG | - | chr1.4:42264676-42264695 | None:intergenic | 55.0% | |
| CATGGAAGGTTGTAGCCACC+AGG | + | chr1.4:42262475-42262494 | MS.gene78641:CDS | 55.0% | |
| CCCACCGAAATTGACACCAG+AGG | + | chr1.4:42264334-42264353 | MS.gene78641:intron | 55.0% | |
| CCCCCTTGTCAAACTCTGTC+AGG | + | chr1.4:42264909-42264928 | MS.gene78641:intron | 55.0% | |
| CTACATCTCCTGCAAGGTCC+TGG | - | chr1.4:42266005-42266024 | None:intergenic | 55.0% | |
| GGAACAAAGCCCCCATGGTA+CGG | + | chr1.4:42264664-42264683 | MS.gene78641:intron | 55.0% | |
| GGTTGTGAAAGGGCCTTGGT+AGG | + | chr1.4:42265665-42265684 | MS.gene78641:intron | 55.0% | |
| GTCTCAGGTTCGATTCCCTC+TGG | - | chr1.4:42264353-42264372 | None:intergenic | 55.0% | |
| GTGATGGCAGAAGCGAAAGG+CGG | + | chr1.4:42263433-42263452 | MS.gene78641:intron | 55.0% | |
| TGACGGCGGGAAAAGAGTGA+TGG | + | chr1.4:42263417-42263436 | MS.gene78641:intron | 55.0% | |
| TGAGCAGAGTGAGTTGCGCT+TGG | + | chr1.4:42264605-42264624 | MS.gene78641:intron | 55.0% | |
| TGATGGCAGAAGCGAAAGGC+GGG | + | chr1.4:42263434-42263453 | MS.gene78641:intron | 55.0% | |
| TTTGCAGCAGAACGTGACGG+CGG | + | chr1.4:42263403-42263422 | MS.gene78641:intron | 55.0% | |
| ! | CCCTCTGGTGTCAATTTCGG+TGG | - | chr1.4:42264338-42264357 | None:intergenic | 55.0% |
| ! | GGTTGGTTGTGAAAGGGCCT+TGG | + | chr1.4:42265661-42265680 | MS.gene78641:intron | 55.0% |
| !! | CCCATTTGGGGTTGGCCTAA+TGG | - | chr1.4:42264410-42264429 | None:intergenic | 55.0% |
| !! | GGTAGGTGCTGATCCTATGG+AGG | + | chr1.4:42265682-42265701 | MS.gene78641:intron | 55.0% |
| !! | GGTTGGCCTAATGGTTGGCT+TGG | - | chr1.4:42264401-42264420 | None:intergenic | 55.0% |
| AATTCCACCGCCCACTTGCG+GGG | + | chr1.4:42264272-42264291 | MS.gene78641:intron | 60.0% | |
| AGCCCCCATGGTACGGTTCA+AGG | + | chr1.4:42264671-42264690 | MS.gene78641:intron | 60.0% | |
| CAATTCCACCGCCCACTTGC+GGG | + | chr1.4:42264271-42264290 | MS.gene78641:intron | 60.0% | |
| CCAATTCCACCGCCCACTTG+CGG | + | chr1.4:42264270-42264289 | MS.gene78641:intron | 60.0% | |
| CTTCAGAGGGTTCGGGCACA+TGG | - | chr1.4:42266954-42266973 | None:intergenic | 60.0% | |
| GCCCCCATGGTACGGTTCAA+GGG | + | chr1.4:42264672-42264691 | MS.gene78641:intron | 60.0% | |
| TGTGGGGAACAAAGCCCCCA+TGG | + | chr1.4:42264659-42264678 | MS.gene78641:intron | 60.0% | |
| TTGCAGCAGAACGTGACGGC+GGG | + | chr1.4:42263404-42263423 | MS.gene78641:intron | 60.0% | |
| TTTGGGAGCGAGTGGGGTGT+GGG | + | chr1.4:42264642-42264661 | MS.gene78641:intron | 60.0% | |
| ! | TGAGTTGGAGCGCCCAATCC+TGG | + | chr1.4:42263464-42263483 | MS.gene78641:intron | 60.0% |
| ! | TGTGCCCGAACCCTCTGAAG+AGG | + | chr1.4:42266954-42266973 | MS.gene78641:CDS | 60.0% |
| !! | TTTTGGGAGCGAGTGGGGTG+TGG | + | chr1.4:42264641-42264660 | MS.gene78641:intron | 60.0% |
| ATTCCACCGCCCACTTGCGG+GGG | + | chr1.4:42264273-42264292 | MS.gene78641:intron | 65.0% | |
| CCGCAAGTGGGCGGTGGAAT+TGG | - | chr1.4:42264273-42264292 | None:intergenic | 65.0% | |
| TAAACGGGGCCCCCGCAAGT+GGG | - | chr1.4:42264285-42264304 | None:intergenic | 65.0% | |
| TTAAACGGGGCCCCCGCAAG+TGG | - | chr1.4:42264286-42264305 | None:intergenic | 65.0% | |
| TTGGGAGCGAGTGGGGTGTG+GGG | + | chr1.4:42264643-42264662 | MS.gene78641:intron | 65.0% | |
| ! | ACGGGGCCCCCGCAAGTGGG+CGG | - | chr1.4:42264282-42264301 | None:intergenic | 80.0% |
| ! | GGGCCCCCGCAAGTGGGCGG+TGG | - | chr1.4:42264279-42264298 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 42262414 | 42267041 | 42262414 | ID=MS.gene78641 |
| chr1.4 | mRNA | 42262414 | 42267041 | 42262414 | ID=MS.gene78641.t1;Parent=MS.gene78641 |
| chr1.4 | exon | 42262414 | 42262535 | 42262414 | ID=MS.gene78641.t1.exon1;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42262414 | 42262535 | 42262414 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42263645 | 42263735 | 42263645 | ID=MS.gene78641.t1.exon2;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42263645 | 42263735 | 42263645 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42263823 | 42263921 | 42263823 | ID=MS.gene78641.t1.exon3;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42263823 | 42263921 | 42263823 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42265014 | 42265115 | 42265014 | ID=MS.gene78641.t1.exon4;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42265014 | 42265115 | 42265014 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42266006 | 42266065 | 42266006 | ID=MS.gene78641.t1.exon5;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42266006 | 42266065 | 42266006 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42266157 | 42266263 | 42266157 | ID=MS.gene78641.t1.exon6;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42266157 | 42266263 | 42266157 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42266342 | 42266424 | 42266342 | ID=MS.gene78641.t1.exon7;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42266342 | 42266424 | 42266342 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42266664 | 42266754 | 42266664 | ID=MS.gene78641.t1.exon8;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42266664 | 42266754 | 42266664 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| chr1.4 | exon | 42266837 | 42267041 | 42266837 | ID=MS.gene78641.t1.exon9;Parent=MS.gene78641.t1 |
| chr1.4 | CDS | 42266837 | 42267041 | 42266837 | ID=cds.MS.gene78641.t1;Parent=MS.gene78641.t1 |
| Gene Sequence |
| Protein sequence |
