AlfalfaGEDB | MS.gene78867

M. sativa cultivar XinJiangDaYe / MS.gene78867

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00627.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78867.t1	XP_003628026.1	96.6	588	19	1	37	623	37	624	0.00E+00	1104.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78867.t1	G7LIE5	96.6	588	19	1	37	623	37	624	0.0e+00	1104.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049801	MS.gene78867	0.812463	4.19E-51	-1.69E-46
MS.gene049983	MS.gene78867	0.817588	3.05E-52	-1.69E-46
MS.gene050654	MS.gene78867	0.80411	2.53E-49	-1.69E-46
MS.gene050737	MS.gene78867	0.838536	2.71E-57	-1.69E-46
MS.gene050941	MS.gene78867	0.87265	2.70E-67	-1.69E-46
MS.gene051003	MS.gene78867	0.817166	3.80E-52	-1.69E-46
MS.gene051122	MS.gene78867	0.804165	2.46E-49	-1.69E-46
MS.gene052674	MS.gene78867	0.839565	1.47E-57	-1.69E-46
MS.gene052675	MS.gene78867	0.83354	5.03E-56	-1.69E-46
MS.gene052677	MS.gene78867	0.834261	3.32E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78867.t1	MTR_8g041570	96.795	624	19	1	1	623	1	624	0.0	1255
MS.gene78867.t1	MTR_5g088750	38.519	675	314	20	18	621	17	661	1.55e-115	359

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78867.t1	AT2G26920	35.608	674	310	24	18	619	22	643	5.49e-82	271
MS.gene78867.t1	AT5G12120	51.128	266	112	5	1	256	1	258	4.87e-70	238

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Find 153 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGTGCAGAAGTTAG+TGG	0.483211	8.3:-56497639	MS.gene78867:CDS
AAAATCCAAGTCGAAGGCGA+AGG	0.590839	8.3:-56498080	MS.gene78867:CDS
AAACAACGCCGGGAATAGGA+TGG	0.619668	8.3:-56496397	MS.gene78867:CDS
AAAGAATATTCCCATGTATT+TGG	0.095875	8.3:-56496762	MS.gene78867:CDS
AACATATTAGAAGGATTTGA+TGG	0.388055	8.3:+56497098	None:intergenic
AAGAATATTCCCATGTATTT+GGG	0.321676	8.3:-56496761	MS.gene78867:CDS
AAGACTTCTCCAAAGACTTC+CGG	0.464853	8.3:-56498040	MS.gene78867:CDS
AAGCACGTTAAAATCTCAGA+AGG	0.602359	8.3:-56497360	MS.gene78867:CDS
AAGCCATACATCACCTGATC+TGG	0.432955	8.3:+56496440	None:intergenic
AAGCTGCAAACTCATCTACT+CGG	0.657093	8.3:-56497805	MS.gene78867:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTCACCGTATGTTAAAA+TGG	-	chr8.3:56497291-56497310	MS.gene78867:CDS	30.0%
AATTAGAAGAATCGATATCG+TGG	-	chr8.3:56496789-56496808	MS.gene78867:CDS	30.0%
AGGAAGAATCTCATTTGAAT+CGG	-	chr8.3:56497011-56497030	MS.gene78867:CDS	30.0%
TCGACTACAACAATATAGAT+TGG	-	chr8.3:56497866-56497885	MS.gene78867:CDS	30.0%
TTCAACTATTACAATGTACG+TGG	-	chr8.3:56497127-56497146	MS.gene78867:CDS	30.0%
TTGGTATGTAAATAGTGTTC+CGG	-	chr8.3:56497465-56497484	MS.gene78867:CDS	30.0%
AAAACTTGTGCAGAAGTTAG+TGG	-	chr8.3:56496712-56496731	MS.gene78867:CDS	35.0%
AAGCACGTTAAAATCTCAGA+AGG	-	chr8.3:56496991-56497010	MS.gene78867:CDS	35.0%
AATAGTTCGATGAGATCTCA+GGG	-	chr8.3:56497055-56497074	MS.gene78867:CDS	35.0%
ACGAAAATACAAGGTCGAAT+GGG	-	chr8.3:56497491-56497510	MS.gene78867:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	56496251	56498122	56496251	ID=MS.gene78867
chr8.3	mRNA	56496251	56498122	56496251	ID=MS.gene78867.t1;Parent=MS.gene78867
chr8.3	exon	56496251	56498122	56496251	ID=MS.gene78867.t1.exon1;Parent=MS.gene78867.t1
chr8.3	CDS	56496251	56498122	56496251	ID=cds.MS.gene78867.t1;Parent=MS.gene78867.t1

Gene Sequence

>MS.gene78867

ATGTCTCCATCAATGAAATCAAAATCCAAGTCGAAGGCGAAGGCTGCAAAGGAACAACAAAAGACTTCTCCAAAGACTTCCGGATCTACTAATGATGAGAGCAGCATTCCTTCTAGTGCGTGCGATCTCGAAACATCATTGGTTGATTCTTCTTCCATAGTTAATGACAACAGCCAATTCGCAAAAATAAATGAAACAGATGATCATTCTATTAGTCCTCAAGGAACGGTGTCTGAGTATGATTCTGTTTCTAATAACGGCAGTTGTTCTGGTGAATCGGAAGACACTAAAGAGAAAGCTGCAAACTCATCTACTCGGTTGGAATTTATACCTGGTTGTGATAACGACAGAAGGGATAAGATCCGACTGAAGAATGAGAGGAAGCACCAGAGACAGAGGGAAAGGAGAGCTCATGAGTTGCACGAGCGATGCGTTGCGTATCTAATGTCGAGAAAGCTAGAAAAACTTGTGCAGAAGTTAGTGGCGATGGGATTCACTACCGAGCGAGCAACGTTGGCTTTGAAGTTAAACAACGGAAAATTAGAAGAATCGATATCGTGGCTATTTGAAGGAGGAAGTGAAGTGAAAGATACTACCAACCTTGTAAGCGATGGTAATTTGAAGATCGACATAAGTGAAGTGCTTGAACAAATTTATGCTCTGGAAGTAAAATACAATTGTTCAAAGCAAGAAGTTGAAAGAGCAGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGAAAGCACGTTAAAATCTCAGAAGGAAGAATCTCATTTGAATCGGTCAGAAGATTCTGCTCAAAATAATAGTTCGATGAGATCTCAGGGATTACAACCAGCGTCAGTATCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAATGTACGTGGTGCTGATTCTATGTTCCATGATCCTGAAAATAGGAATCCACAGTCTCTACACTTGAATCATCAAAATGAACTGACACAGAAAAGATGGGGTGTTAGTGCTACACCATCAAATCCTTCTAATATGTTACAATCCATGCAAGCAATGTCACCGTATGTTAAAATGGAGGCACAGCCGAGTGCCTTTAGGAACGACGGAAGAATGATTCATCAAGGAGTAGGAAGGGAACAGGTAGTCATGATGCAGCATCCACAATTCGCCGATGCCAAACAAAATTATCTGAATTCTATGAATTCCATACCTTCCGGAACATCTAGTTGGTATGTAAATAGTGTTCCGGCATACGAAAATACAAGGTCGAATGGGAATTTACTACTACAAAATCATGGCATGGGAAATGTCGGCGCAGATCGCCTGCAGCAACTTTCTCAAGCTCCTTATAAAGAATATTCCCATGTATTTGGGCCGGCAGATTCTTCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCGATGGTTGCATCGTCACCTTCACCTACAATGCCTTCTCAGTCTCACCCTCAACATCACGGCTCACGGAACACCGCCGCATCTTCCCCTGCACTTACAGTTCCACCTTCCCTTGGGCTCTTTTGCGGTCATCAGAATCCATCGGCCAGATCATTCAGTTCACATTCACATGTGGATTGGAATACCGGGGGCATGGTGCAAGAATTCGACTACAACAATATAGATTGGAGTTTAGATTGCTCGTCGGCATCCAGATCAGGTGATGTATGGCTTGGATTCTCATCGTCGTTGAGAAACAACGCCGGGAATAGGATGGCCAGTTCTTATATGACTGGATCGCGAAATGTTGGCACGGCGAGGGAAATTTCATCATCTGCTGGATTGCGAGATTGGACCTCACCTTTTGCTGGGAAGGACATATTCAGTGCTCCCAGAAAGTTTGTTACCTTTCCTCCTATGTAG

Protein sequence

>MS.gene78867.t1

MSPSMKSKSKSKAKAAKEQQKTSPKTSGSTNDESSIPSSACDLETSLVDSSSIVNDNSQFAKINETDDHSISPQGTVSEYDSVSNNGSCSGESEDTKEKAANSSTRLEFIPGCDNDRRDKIRLKNERKHQRQRERRAHELHERCVAYLMSRKLEKLVQKLVAMGFTTERATLALKLNNGKLEESISWLFEGGSEVKDTTNLVSDGNLKIDISEVLEQIYALEVKYNCSKQEVERAVVACEGDLQKAESTLKSQKEESHLNRSEDSAQNNSSMRSQGLQPASVSIQQRGNESDFNYYNVRGADSMFHDPENRNPQSLHLNHQNELTQKRWGVSATPSNPSNMLQSMQAMSPYVKMEAQPSAFRNDGRMIHQGVGREQVVMMQHPQFADAKQNYLNSMNSIPSGTSSWYVNSVPAYENTRSNGNLLLQNHGMGNVGADRLQQLSQAPYKEYSHVFGPADSSISSGGMGGFYKPMVASSPSPTMPSQSHPQHHGSRNTAASSPALTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCSSASRSGDVWLGFSSSLRNNAGNRMASSYMTGSRNVGTAREISSSAGLRDWTSPFAGKDIFSAPRKFVTFPPM