AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79626


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79626.t1 MTR_7g009780 98.039 408 8 0 9 416 121 528 0.0 825
MS.gene79626.t1 MTR_7g009820 70.633 395 110 4 9 399 129 521 0.0 536
MS.gene79626.t1 MTR_7g009760 53.968 252 88 7 185 416 83 326 1.52e-70 225
MS.gene79626.t1 MTR_7g009760 84.375 64 10 0 1 64 113 176 3.20e-29 116
MS.gene79626.t1 MTR_7g009830 56.757 74 32 0 316 389 1 74 1.34e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGATTGTTGGAATTTA+TGG 0.078772 7.3:+88376825 MS.gene79626:CDS
TGGTAAAAGTTTGAAAATTT+TGG 0.149572 7.3:-88379331 None:intergenic
TCTATACCAGATGCAGATTT+TGG 0.178689 7.3:+88378074 MS.gene79626:CDS
GGCATCTGAATTTGCAATAT+TGG 0.192813 7.3:-88379310 None:intergenic
GAAACTGGAGCTAGTGTTTA+TGG 0.194173 7.3:+88379561 MS.gene79626:CDS
GGACACATTTATGCAATTAA+TGG 0.201030 7.3:+88379510 MS.gene79626:CDS
ATGTCTGGAACTTATTATAA+TGG 0.252608 7.3:+88376936 MS.gene79626:CDS
CTCGAACCGGTGACATCTTA+TGG 0.254463 7.3:+88377706 MS.gene79626:CDS
TTCAATCTTGGCCCTTGATT+TGG 0.257115 7.3:+88377953 MS.gene79626:CDS
AGGATTCTATTCTAACTATA+CGG 0.264601 7.3:+88379641 MS.gene79626:CDS
CGGGGCAGAGTAGAGATTTC+CGG 0.267339 7.3:-88377841 None:intergenic
ATGTTAACTACACATGTAAA+TGG 0.274129 7.3:+88378110 MS.gene79626:CDS
ACTTCATTTGCCACACTAAC+AGG 0.279058 7.3:-88379459 None:intergenic
GCTGGGCCTGGTGGACTAGC+TGG 0.298475 7.3:+88379243 MS.gene79626:CDS
TATGGACCTGCTGTTGTTAT+TGG 0.299331 7.3:+88376843 MS.gene79626:CDS
GGAGAACTGGTGAGCTTGTT+TGG 0.317549 7.3:+88376874 MS.gene79626:CDS
ACACACTTGTCTTGTTCAAT+AGG 0.329135 7.3:-88377909 None:intergenic
GATGTTGTGTTCATATTTGA+TGG 0.359013 7.3:-88379351 None:intergenic
TATGCAATTAATGGAAGAAA+TGG 0.360213 7.3:+88379519 MS.gene79626:CDS
ATATGCTGGAGCTGCCATTT+GGG 0.362982 7.3:+88377770 MS.gene79626:CDS
TGTTGGATCCACAGATAGAT+TGG 0.364449 7.3:+88379488 MS.gene79626:CDS
ATCAAATGGTACAAACAATT+AGG 0.373006 7.3:+88377987 MS.gene79626:CDS
CATATGCTGGAGCTGCCATT+TGG 0.379478 7.3:+88377769 MS.gene79626:CDS
TGTCTGGAACTTATTATAAT+GGG 0.380311 7.3:+88376937 MS.gene79626:CDS
GCTGGAGTTGTTACCATGTC+TGG 0.385868 7.3:+88376921 MS.gene79626:CDS
GTGGAGATTTGTTCAATAGA+AGG 0.386676 7.3:+88376523 MS.gene79626:CDS
CAGCAGGATGATTATCCAAA+TGG 0.392967 7.3:-88376902 None:intergenic
ATGGAAAACATATATGTTAC+CGG 0.395049 7.3:+88377725 MS.gene79626:CDS
ACATGTGTAGTTAACATCAT+TGG 0.398269 7.3:-88378104 None:intergenic
TCAAATATGAACACAACATC+TGG 0.400754 7.3:+88379354 MS.gene79626:CDS
TGGAACCCTTCAATGGTTTA+CGG 0.406717 7.3:+88378199 MS.gene79626:CDS
AAACTGGAGCTAGTGTTTAT+GGG 0.412511 7.3:+88379562 MS.gene79626:CDS
CTAGCTGGAGGTGGAACATT+TGG 0.415102 7.3:+88379258 MS.gene79626:CDS
CCTATCTTTCCGTTATTATC+CGG 0.416153 7.3:-88377744 None:intergenic
CTAGCAATGGAACAATTCTA+TGG 0.419731 7.3:+88379397 MS.gene79626:CDS
GCTGAAGATTTATTGATTGT+TGG 0.421980 7.3:+88376816 MS.gene79626:CDS
GCTTGTTTGGCTGACCCATT+TGG 0.432883 7.3:+88376887 MS.gene79626:CDS
CCTGGTGGACTAGCTGGAGG+TGG 0.437639 7.3:+88379249 MS.gene79626:CDS
TATTACCATTGTCCAAATCA+AGG 0.441095 7.3:-88377965 None:intergenic
TTCAGAAAAGTGGATTTGCT+TGG 0.442678 7.3:+88378159 MS.gene79626:CDS
GCCTCTCCAAAATCTGCATC+TGG 0.444115 7.3:-88378080 None:intergenic
TCAGAAAAGTGGATTTGCTT+GGG 0.453665 7.3:+88378160 MS.gene79626:CDS
ATCTGGAGGATGGGTGGCAA+TGG 0.457177 7.3:+88379371 MS.gene79626:CDS
AAACCACTCAAATTCAATCT+TGG 0.459032 7.3:+88377941 MS.gene79626:CDS
GAAGATTGTTGCATATTTCG+TGG 0.462258 7.3:+88377663 MS.gene79626:CDS
GTTGGATCCACAGATAGATT+GGG 0.468552 7.3:+88379489 MS.gene79626:CDS
CCGGATAATAACGGAAAGAT+AGG 0.470878 7.3:+88377744 MS.gene79626:CDS
GCGACAATGGAACCCTTCAA+TGG 0.471588 7.3:+88378192 MS.gene79626:CDS
AAGTGGATTTGCTTGGGCAT+TGG 0.476012 7.3:+88378166 MS.gene79626:CDS
GTTGTTGCTGTTCAGAAAAG+TGG 0.490333 7.3:+88378149 MS.gene79626:CDS
ATATTACCGTAAACCATTGA+AGG 0.491331 7.3:-88378205 None:intergenic
CTAGCAGTACTATTAATGCT+AGG 0.491777 7.3:-88379432 None:intergenic
ATTGGTCTTGAAAGGAGAAC+TGG 0.494135 7.3:+88376861 MS.gene79626:CDS
GTAAAACTTGATGCTCGAAC+CGG 0.495278 7.3:+88377693 MS.gene79626:CDS
CCACCTCCAGCTAGTCCACC+AGG 0.496549 7.3:-88379249 None:intergenic
ATAAAATCTTTAGACACAAA+AGG 0.500433 7.3:-88379682 None:intergenic
TGGACAATGGTAATATCAAA+TGG 0.505834 7.3:+88377973 MS.gene79626:CDS
CATTTGGATAATCATCCTGC+TGG 0.512194 7.3:+88376903 MS.gene79626:CDS
AAATATGCAACAATCTTCAA+TGG 0.513224 7.3:-88377658 None:intergenic
ATATTACAGGAAGCTGGGCC+TGG 0.515009 7.3:+88379231 MS.gene79626:intron
AGCAGGATGATTATCCAAAT+GGG 0.521030 7.3:-88376901 None:intergenic
CATGGATATAATGTCTCTCT+AGG 0.525419 7.3:+88379621 MS.gene79626:CDS
AATTAGGAGGATATGATGTA+TGG 0.528476 7.3:+88378003 MS.gene79626:CDS
TTGGCCCTTGATTTGGACAA+TGG 0.532301 7.3:+88377960 MS.gene79626:CDS
TAGTAATGGATGTGTTTATG+TGG 0.532402 7.3:+88379596 MS.gene79626:CDS
CTGTTGTTATTGGTCTTGAA+AGG 0.533524 7.3:+88376853 MS.gene79626:CDS
GGAAGGACTACTTCCCCAAA+TGG 0.534598 7.3:-88377784 None:intergenic
GGATTCTATTCTAACTATAC+GGG 0.541048 7.3:+88379642 MS.gene79626:CDS
GGGCCTGGTGGACTAGCTGG+AGG 0.547307 7.3:+88379246 MS.gene79626:CDS
TGAACACAACATCTGGAGGA+TGG 0.555417 7.3:+88379361 MS.gene79626:CDS
TATGCTGGAGCTGCCATTTG+GGG 0.558718 7.3:+88377771 MS.gene79626:CDS
ATTTCTAATTGTCCACCTCA+AGG 0.560988 7.3:+88378050 MS.gene79626:CDS
GGGCCAAGATTGAATTTGAG+TGG 0.564062 7.3:-88377944 None:intergenic
AATAAATCTTCAGCCACAGT+TGG 0.564438 7.3:-88376807 None:intergenic
GGAAAGATAGGAGCATATGC+TGG 0.567341 7.3:+88377756 MS.gene79626:CDS
TGCTAGTGGCCCTGTTAGTG+TGG 0.568976 7.3:+88379449 MS.gene79626:CDS
GGATGTGTTTATGTGGGTCA+TGG 0.572048 7.3:+88379603 MS.gene79626:CDS
TGGGCATTGGATCGCGACAA+TGG 0.572247 7.3:+88378179 MS.gene79626:CDS
TAGCAGTACTATTAATGCTA+GGG 0.574326 7.3:-88379431 None:intergenic
GACATGGTAACAACTCCAGC+AGG 0.576037 7.3:-88376918 None:intergenic
TCAAGACCAATAACAACAGC+AGG 0.576150 7.3:-88376849 None:intergenic
GAACACAACATCTGGAGGAT+GGG 0.578899 7.3:+88379362 MS.gene79626:CDS
AACTGGAGCTAGTGTTTATG+GGG 0.580406 7.3:+88379563 MS.gene79626:CDS
TATTACCGTAAACCATTGAA+GGG 0.582362 7.3:-88378204 None:intergenic
TATATGTTACCGGATAATAA+CGG 0.583087 7.3:+88377735 MS.gene79626:CDS
CACAACATCTGGAGGATGGG+TGG 0.584419 7.3:+88379365 MS.gene79626:CDS
TTTCGATAAACATCAATGGA+AGG 0.586957 7.3:-88377801 None:intergenic
GGCTAGAGCAACTCCAACTG+TGG 0.587661 7.3:+88376794 MS.gene79626:CDS
ATTACCATTGTCCAAATCAA+GGG 0.590906 7.3:-88377964 None:intergenic
ATATATAGGAGTTACTATGT+TGG 0.592038 7.3:+88377609 MS.gene79626:intron
GGAACATCTTCACTAGAAGA+AGG 0.592079 7.3:+88377630 MS.gene79626:CDS
GACACAAAAGGCAAAGAGTG+AGG 0.592209 7.3:-88379670 None:intergenic
AAACATGTCTATATTGCCAC+CGG 0.596786 7.3:+88377822 MS.gene79626:CDS
AGTAATGGATGTGTTTATGT+GGG 0.600881 7.3:+88379597 MS.gene79626:CDS
CTTCATTTGCCACACTAACA+GGG 0.602466 7.3:-88379458 None:intergenic
AAATGGTACAAACAATTAGG+AGG 0.607059 7.3:+88377990 MS.gene79626:CDS
TTCTATTCTAACTATACGGG+TGG 0.616004 7.3:+88379645 MS.gene79626:CDS
TTACAGGAAGCTGGGCCTGG+TGG 0.618989 7.3:+88379234 MS.gene79626:intron
TATTGAACAAATCTCCACCA+TGG 0.646101 7.3:-88376518 None:intergenic
AATATGAACACAACATCTGG+AGG 0.652641 7.3:+88379357 MS.gene79626:CDS
AATGTGTCCCAATCTATCTG+TGG 0.653384 7.3:-88379496 None:intergenic
GTGGCAATGGATGCTAGCAA+TGG 0.660877 7.3:+88379384 MS.gene79626:CDS
AGCATTAATAGTACTGCTAG+TGG 0.666802 7.3:+88379435 MS.gene79626:CDS
TCTGGTATAGAACCTTGAGG+TGG 0.699068 7.3:-88378062 None:intergenic
GGCAGAGTAGAGATTTCCGG+TGG 0.703544 7.3:-88377838 None:intergenic
ATTATAATAAGTTCCAGACA+TGG 0.711222 7.3:-88376934 None:intergenic
GCATCTGGTATAGAACCTTG+AGG 0.720540 7.3:-88378065 None:intergenic
ACTGGAGCTAGTGTTTATGG+GGG 0.731779 7.3:+88379564 MS.gene79626:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATACTTTGATATAAAA+GGG - chr7.3:88377575-88377594 None:intergenic 10.0%
!! TAATTATACTTTGATATAAA+AGG - chr7.3:88377576-88377595 None:intergenic 10.0%
!! GATTTATAATTAATGCAAAT+TGG + chr7.3:88376766-88376785 MS.gene79626:intron 15.0%
!!! ATGATCAATATATTTTTGTT+TGG + chr7.3:88377439-88377458 MS.gene79626:intron 15.0%
!!! TTTCCAAATGTTTTAAAAAT+TGG + chr7.3:88377003-88377022 MS.gene79626:intron 15.0%
!!! TTTTAAAAATTGGATCATAT+TGG + chr7.3:88377013-88377032 MS.gene79626:intron 15.0%
!! ACAAAAGATCAATATAGAAA+CGG + chr7.3:88376560-88376579 MS.gene79626:intron 20.0%
!! ATGTTAAACTCTCAATATAT+AGG + chr7.3:88377595-88377614 MS.gene79626:intron 20.0%
!!! ATCATTTTACAATTATAGAG+TGG + chr7.3:88379084-88379103 MS.gene79626:intron 20.0%
!!! GATCCAATTTTTAAAACATT+TGG - chr7.3:88377009-88377028 None:intergenic 20.0%
!!! TGGTAAAAGTTTGAAAATTT+TGG - chr7.3:88379334-88379353 None:intergenic 20.0%
!!! TTATTGATTGTTGGAATTTA+TGG + chr7.3:88376825-88376844 MS.gene79626:CDS 20.0%
! AAAAAACTGCAAATCTAGTT+TGG + chr7.3:88377315-88377334 MS.gene79626:intron 25.0%
! AAATATGCAACAATCTTCAA+TGG - chr7.3:88377661-88377680 None:intergenic 25.0%
! ACTGATTGAACTATGAATAA+AGG + chr7.3:88377180-88377199 MS.gene79626:intron 25.0%
! AGGATTCTATTCTAACTATA+CGG + chr7.3:88379641-88379660 MS.gene79626:CDS 25.0%
! ATATATAGGAGTTACTATGT+TGG + chr7.3:88377609-88377628 MS.gene79626:intron 25.0%
! ATCAAATGGTACAAACAATT+AGG + chr7.3:88377987-88378006 MS.gene79626:CDS 25.0%
! ATGCAATTAAACAACTTGAT+GGG + chr7.3:88376691-88376710 MS.gene79626:intron 25.0%
! ATGGAAAACATATATGTTAC+CGG + chr7.3:88377725-88377744 MS.gene79626:CDS 25.0%
! ATGTTAACTACACATGTAAA+TGG + chr7.3:88378110-88378129 MS.gene79626:CDS 25.0%
! ATTATAATAAGTTCCAGACA+TGG - chr7.3:88376937-88376956 None:intergenic 25.0%
! ATTGTACCATTGTATATTGT+TGG - chr7.3:88376642-88376661 None:intergenic 25.0%
! CCTTAAAAGAAATCAAGTTT+GGG + chr7.3:88377519-88377538 MS.gene79626:intron 25.0%
! CTATGAGCTAAAAATATTAC+AGG + chr7.3:88379218-88379237 MS.gene79626:intron 25.0%
! GAAAATACTACTACTTCTTT+AGG + chr7.3:88377233-88377252 MS.gene79626:intron 25.0%
! TAAAAATATTACAGGAAGCT+GGG + chr7.3:88379226-88379245 MS.gene79626:intron 25.0%
! TATATGTTACCGGATAATAA+CGG + chr7.3:88377735-88377754 MS.gene79626:CDS 25.0%
! TATGCAATTAAACAACTTGA+TGG + chr7.3:88376690-88376709 MS.gene79626:intron 25.0%
! TATGCAATTAATGGAAGAAA+TGG + chr7.3:88379519-88379538 MS.gene79626:CDS 25.0%
! TCACAACTTCAAACTAATTT+GGG - chr7.3:88378764-88378783 None:intergenic 25.0%
! TTGTAGGATATTCTTTGTTA+TGG - chr7.3:88378461-88378480 None:intergenic 25.0%
!! ATGTCTGGAACTTATTATAA+TGG + chr7.3:88376936-88376955 MS.gene79626:CDS 25.0%
!! ATGTTTTCGATAAACATCAA+TGG - chr7.3:88377808-88377827 None:intergenic 25.0%
!! ATTTTATGGTCATATGAAAC+TGG + chr7.3:88379546-88379565 MS.gene79626:CDS 25.0%
!! CCAAACTTGATTTCTTTTAA+GGG - chr7.3:88377521-88377540 None:intergenic 25.0%
!! GAAGAAATGGACATATTTTA+TGG + chr7.3:88379532-88379551 MS.gene79626:CDS 25.0%
!! GATCATAAGTATTTTCTTCT+TGG - chr7.3:88377425-88377444 None:intergenic 25.0%
!! TGTCTGGAACTTATTATAAT+GGG + chr7.3:88376937-88376956 MS.gene79626:CDS 25.0%
!!! CATGTTTTTTTCAACCTTAA+AGG + chr7.3:88378939-88378958 MS.gene79626:intron 25.0%
!!! GGTATAAATTCTTTTTTCGT+CGG - chr7.3:88379292-88379311 None:intergenic 25.0%
AAAAATTGGATCATATTGGC+TGG + chr7.3:88377017-88377036 MS.gene79626:intron 30.0%
AAACCACTCAAATTCAATCT+TGG + chr7.3:88377941-88377960 MS.gene79626:CDS 30.0%
AAAGGGTCGAAAAGAAAAAA+AGG - chr7.3:88377558-88377577 None:intergenic 30.0%
AAATGGTACAAACAATTAGG+AGG + chr7.3:88377990-88378009 MS.gene79626:CDS 30.0%
AATTAATGCAAATTGGACAG+TGG + chr7.3:88376773-88376792 MS.gene79626:intron 30.0%
AATTAGGAGGATATGATGTA+TGG + chr7.3:88378003-88378022 MS.gene79626:CDS 30.0%
ACATGTGTAGTTAACATCAT+TGG - chr7.3:88378107-88378126 None:intergenic 30.0%
ACTCAATCACAATTTCACTT+AGG + chr7.3:88378304-88378323 MS.gene79626:intron 30.0%
ATATTACCGTAAACCATTGA+AGG - chr7.3:88378208-88378227 None:intergenic 30.0%
ATGAACTAGTTCAAGTAGTA+AGG - chr7.3:88378880-88378899 None:intergenic 30.0%
ATTACCATTGTCCAAATCAA+GGG - chr7.3:88377967-88377986 None:intergenic 30.0%
CAAAACTTGAAGAAATTGAC+AGG + chr7.3:88376729-88376748 MS.gene79626:intron 30.0%
CAAACAGAAACTAAAACAGA+AGG - chr7.3:88378646-88378665 None:intergenic 30.0%
CAAGTATGCATATACCTTTA+AGG - chr7.3:88378956-88378975 None:intergenic 30.0%
CCCTTAAAAGAAATCAAGTT+TGG + chr7.3:88377518-88377537 MS.gene79626:intron 30.0%
CTAAAAATATTACAGGAAGC+TGG + chr7.3:88379225-88379244 MS.gene79626:intron 30.0%
GATGTTGTGTTCATATTTGA+TGG - chr7.3:88379354-88379373 None:intergenic 30.0%
GGACACATTTATGCAATTAA+TGG + chr7.3:88379510-88379529 MS.gene79626:CDS 30.0%
GGATTCTATTCTAACTATAC+GGG + chr7.3:88379642-88379661 MS.gene79626:CDS 30.0%
GTCACAACTTCAAACTAATT+TGG - chr7.3:88378765-88378784 None:intergenic 30.0%
TAGCAGTACTATTAATGCTA+GGG - chr7.3:88379434-88379453 None:intergenic 30.0%
TATTACCATTGTCCAAATCA+AGG - chr7.3:88377968-88377987 None:intergenic 30.0%
TATTACCGTAAACCATTGAA+GGG - chr7.3:88378207-88378226 None:intergenic 30.0%
TCAAATATGAACACAACATC+TGG + chr7.3:88379354-88379373 MS.gene79626:CDS 30.0%
TGGACAATGGTAATATCAAA+TGG + chr7.3:88377973-88377992 MS.gene79626:CDS 30.0%
TTCCACTTCAAACTTAGTTT+AGG - chr7.3:88376588-88376607 None:intergenic 30.0%
TTCCTAAACTAAGTTTGAAG+TGG + chr7.3:88376583-88376602 MS.gene79626:intron 30.0%
TTGACAGGTTTAAATACAAC+TGG + chr7.3:88376744-88376763 MS.gene79626:intron 30.0%
TTTCGATAAACATCAATGGA+AGG - chr7.3:88377804-88377823 None:intergenic 30.0%
! ACTTAAAAGTTGTTAGCTTG+AGG + chr7.3:88378981-88379000 MS.gene79626:intron 30.0%
! ATATGCAAGATGTCTTTTCT+AGG + chr7.3:88378905-88378924 MS.gene79626:intron 30.0%
! ATTGAATTTGAGTGGTTTTC+TGG - chr7.3:88377939-88377958 None:intergenic 30.0%
! CCCAAACTTGATTTCTTTTA+AGG - chr7.3:88377522-88377541 None:intergenic 30.0%
! GATTTGTTCAATAGAAGGTA+TGG + chr7.3:88376528-88376547 MS.gene79626:intron 30.0%
! GCTGAAGATTTATTGATTGT+TGG + chr7.3:88376816-88376835 MS.gene79626:CDS 30.0%
! TGACATTCGAGTACATTTTT+CGG - chr7.3:88377864-88377883 None:intergenic 30.0%
!! AGTAATGGATGTGTTTATGT+GGG + chr7.3:88379597-88379616 MS.gene79626:CDS 30.0%
!! ATTTATTTTCCAAGCTGGAA+TGG + chr7.3:88376660-88376679 MS.gene79626:intron 30.0%
!! GTACAATTTATTTTCCAAGC+TGG + chr7.3:88376655-88376674 MS.gene79626:intron 30.0%
!! TAGTAATGGATGTGTTTATG+TGG + chr7.3:88379596-88379615 MS.gene79626:CDS 30.0%
!!! CTTCTGTTTTAGTTTCTGTT+TGG + chr7.3:88378644-88378663 MS.gene79626:intron 30.0%
!!! GCAAATGAAGTTGTTTTTGT+TGG + chr7.3:88379471-88379490 MS.gene79626:CDS 30.0%
!!! TTGCAGTTTTTTTTCGAAGA+CGG - chr7.3:88377307-88377326 None:intergenic 30.0%
AAAATTCCACACCTTGTAGT+TGG + chr7.3:88378714-88378733 MS.gene79626:intron 35.0%
AAACATGTCTATATTGCCAC+CGG + chr7.3:88377822-88377841 MS.gene79626:CDS 35.0%
AAACTGGAGCTAGTGTTTAT+GGG + chr7.3:88379562-88379581 MS.gene79626:CDS 35.0%
AAATTCCACACCTTGTAGTT+GGG + chr7.3:88378715-88378734 MS.gene79626:intron 35.0%
AATAAATCTTCAGCCACAGT+TGG - chr7.3:88376810-88376829 None:intergenic 35.0%
AATATGAACACAACATCTGG+AGG + chr7.3:88379357-88379376 MS.gene79626:CDS 35.0%
ACAGAAACTAAAACAGAAGG+TGG - chr7.3:88378643-88378662 None:intergenic 35.0%
AGCAGGATGATTATCCAAAT+GGG - chr7.3:88376904-88376923 None:intergenic 35.0%
AGCATTAATAGTACTGCTAG+TGG + chr7.3:88379435-88379454 MS.gene79626:CDS 35.0%
ATCCCTAAAAACTTCGTACT+AGG - chr7.3:88378825-88378844 None:intergenic 35.0%
ATTTCTAATTGTCCACCTCA+AGG + chr7.3:88378050-88378069 MS.gene79626:CDS 35.0%
CATGGATATAATGTCTCTCT+AGG + chr7.3:88379621-88379640 MS.gene79626:CDS 35.0%
CCTATCTTTCCGTTATTATC+CGG - chr7.3:88377747-88377766 None:intergenic 35.0%
CTAGCAATGGAACAATTCTA+TGG + chr7.3:88379397-88379416 MS.gene79626:CDS 35.0%
CTAGCAGTACTATTAATGCT+AGG - chr7.3:88379435-88379454 None:intergenic 35.0%
GAAGATTGTTGCATATTTCG+TGG + chr7.3:88377663-88377682 MS.gene79626:CDS 35.0%
GCAACACCAACAATATACAA+TGG + chr7.3:88376633-88376652 MS.gene79626:intron 35.0%
GGCATCTGAATTTGCAATAT+TGG - chr7.3:88379313-88379332 None:intergenic 35.0%
TATATGTTACCATTCCAGCT+TGG - chr7.3:88376672-88376691 None:intergenic 35.0%
TTCGCGTTATTTGTAGAGAT+CGG + chr7.3:88377396-88377415 MS.gene79626:intron 35.0%
TTCTATTCTAACTATACGGG+TGG + chr7.3:88379645-88379664 MS.gene79626:CDS 35.0%
TTTCTGTTTGGATTTCAGCT+CGG + chr7.3:88378656-88378675 MS.gene79626:intron 35.0%
! ACACACTTGTCTTGTTCAAT+AGG - chr7.3:88377912-88377931 None:intergenic 35.0%
! ACATTCGAGTACATTTTTCG+GGG - chr7.3:88377862-88377881 None:intergenic 35.0%
! AGCCTAGTACGAAGTTTTTA+GGG + chr7.3:88378820-88378839 MS.gene79626:intron 35.0%
! CAATAGAAGGTATGGATACA+AGG + chr7.3:88376536-88376555 MS.gene79626:intron 35.0%
! GACATTCGAGTACATTTTTC+GGG - chr7.3:88377863-88377882 None:intergenic 35.0%
! GTAGATTTTCTACCATCAAG+TGG + chr7.3:88377345-88377364 MS.gene79626:intron 35.0%
! GTGGAGATTTGTTCAATAGA+AGG + chr7.3:88376523-88376542 MS.gene79626:CDS 35.0%
! TAAAAGTTGTTAGCTTGAGG+AGG + chr7.3:88378984-88379003 MS.gene79626:intron 35.0%
! TAGCCTAGTACGAAGTTTTT+AGG + chr7.3:88378819-88378838 MS.gene79626:intron 35.0%
! TCAGAAAAGTGGATTTGCTT+GGG + chr7.3:88378160-88378179 MS.gene79626:CDS 35.0%
! TCTATACCAGATGCAGATTT+TGG + chr7.3:88378074-88378093 MS.gene79626:CDS 35.0%
! TGTTTTCCATAAGATGTCAC+CGG - chr7.3:88377715-88377734 None:intergenic 35.0%
! TTCAGAAAAGTGGATTTGCT+TGG + chr7.3:88378159-88378178 MS.gene79626:CDS 35.0%
! TTCGAGCATCAAGTTTTACA+AGG - chr7.3:88377692-88377711 None:intergenic 35.0%
! TTTTGACCCATATAAGTGAG+CGG - chr7.3:88378855-88378874 None:intergenic 35.0%
!! CTGTTGTTATTGGTCTTGAA+AGG + chr7.3:88376853-88376872 MS.gene79626:CDS 35.0%
AACTGGAGCTAGTGTTTATG+GGG + chr7.3:88379563-88379582 MS.gene79626:CDS 40.0%
AATGTGTCCCAATCTATCTG+TGG - chr7.3:88379499-88379518 None:intergenic 40.0%
AATTCCACACCTTGTAGTTG+GGG + chr7.3:88378716-88378735 MS.gene79626:intron 40.0%
ACTAAAACAGAAGGTGGTGT+TGG - chr7.3:88378637-88378656 None:intergenic 40.0%
ACTTCATTTGCCACACTAAC+AGG - chr7.3:88379462-88379481 None:intergenic 40.0%
ATTAATCACGAGCCACTTGA+TGG - chr7.3:88377360-88377379 None:intergenic 40.0%
CACTTGCTCAACAATAGTTG+TGG + chr7.3:88377153-88377172 MS.gene79626:intron 40.0%
CAGCAGGATGATTATCCAAA+TGG - chr7.3:88376905-88376924 None:intergenic 40.0%
CATTTGGATAATCATCCTGC+TGG + chr7.3:88376903-88376922 MS.gene79626:CDS 40.0%
CTAACCTCACCAATCAAGTA+CGG + chr7.3:88377490-88377509 MS.gene79626:intron 40.0%
CTTCATTTGCCACACTAACA+GGG - chr7.3:88379461-88379480 None:intergenic 40.0%
GAAACTGGAGCTAGTGTTTA+TGG + chr7.3:88379561-88379580 MS.gene79626:CDS 40.0%
GAACTTCCGCTCACTTATAT+GGG + chr7.3:88378846-88378865 MS.gene79626:intron 40.0%
GAATCAGCTAGTTCATCAGT+TGG + chr7.3:88377058-88377077 MS.gene79626:intron 40.0%
GGAACATCTTCACTAGAAGA+AGG + chr7.3:88377630-88377649 MS.gene79626:CDS 40.0%
GTAAAACTTGATGCTCGAAC+CGG + chr7.3:88377693-88377712 MS.gene79626:CDS 40.0%
GTTGGATCCACAGATAGATT+GGG + chr7.3:88379489-88379508 MS.gene79626:CDS 40.0%
TAACCTCACCAATCAAGTAC+GGG + chr7.3:88377491-88377510 MS.gene79626:intron 40.0%
TACTAGGCTAGCATTTGTAG+CGG - chr7.3:88378809-88378828 None:intergenic 40.0%
TATGGACCTGCTGTTGTTAT+TGG + chr7.3:88376843-88376862 MS.gene79626:CDS 40.0%
TCAAGACCAATAACAACAGC+AGG - chr7.3:88376852-88376871 None:intergenic 40.0%
TGGAACCCTTCAATGGTTTA+CGG + chr7.3:88378199-88378218 MS.gene79626:CDS 40.0%
TGTTGGATCCACAGATAGAT+TGG + chr7.3:88379488-88379507 MS.gene79626:CDS 40.0%
TTCAATCTTGGCCCTTGATT+TGG + chr7.3:88377953-88377972 MS.gene79626:CDS 40.0%
TTCATCAGTTGGATTGTTCG+TGG + chr7.3:88377069-88377088 MS.gene79626:intron 40.0%
TTCTGTTTGGATTTCAGCTC+GGG + chr7.3:88378657-88378676 MS.gene79626:intron 40.0%
! AACTTGATGGGTCACTTGTT+TGG + chr7.3:88376703-88376722 MS.gene79626:intron 40.0%
! AGAGAGAGAGAGAGTATGAA+TGG + chr7.3:88378379-88378398 MS.gene79626:intron 40.0%
! CCGGATAATAACGGAAAGAT+AGG + chr7.3:88377744-88377763 MS.gene79626:CDS 40.0%
! GGGGGTATGTCAATTAGTAA+TGG + chr7.3:88379582-88379601 MS.gene79626:CDS 40.0%
! GTGCAAGCAACAACTTTTGT+AGG - chr7.3:88378477-88378496 None:intergenic 40.0%
! GTTGTTGCTGTTCAGAAAAG+TGG + chr7.3:88378149-88378168 MS.gene79626:CDS 40.0%
!! ATTGGTCTTGAAAGGAGAAC+TGG + chr7.3:88376861-88376880 MS.gene79626:CDS 40.0%
AACCTCACCAATCAAGTACG+GGG + chr7.3:88377492-88377511 MS.gene79626:intron 45.0%
ACTGGAGCTAGTGTTTATGG+GGG + chr7.3:88379564-88379583 MS.gene79626:CDS 45.0%
CGAACTTCCGCTCACTTATA+TGG + chr7.3:88378845-88378864 MS.gene79626:intron 45.0%
GAACACAACATCTGGAGGAT+GGG + chr7.3:88379362-88379381 MS.gene79626:CDS 45.0%
GACACAAAAGGCAAAGAGTG+AGG - chr7.3:88379673-88379692 None:intergenic 45.0%
GCATCTGGTATAGAACCTTG+AGG - chr7.3:88378068-88378087 None:intergenic 45.0%
GGATGTGTTTATGTGGGTCA+TGG + chr7.3:88379603-88379622 MS.gene79626:CDS 45.0%
GGGCCAAGATTGAATTTGAG+TGG - chr7.3:88377947-88377966 None:intergenic 45.0%
TAGAGCAAGCTGAAACTCAC+TGG + chr7.3:88378265-88378284 MS.gene79626:intron 45.0%
TCAGTTGGATTGTTCGTGGT+CGG + chr7.3:88377073-88377092 MS.gene79626:intron 45.0%
TCTGGTATAGAACCTTGAGG+TGG - chr7.3:88378065-88378084 None:intergenic 45.0%
TGAACACAACATCTGGAGGA+TGG + chr7.3:88379361-88379380 MS.gene79626:CDS 45.0%
! AAAACAGAAGGTGGTGTTGG+CGG - chr7.3:88378634-88378653 None:intergenic 45.0%
! AAGTGGATTTGCTTGGGCAT+TGG + chr7.3:88378166-88378185 MS.gene79626:CDS 45.0%
! ATATGCTGGAGCTGCCATTT+GGG + chr7.3:88377770-88377789 MS.gene79626:CDS 45.0%
! GGAAAGATAGGAGCATATGC+TGG + chr7.3:88377756-88377775 MS.gene79626:CDS 45.0%
!! ACCAGATGCAGATTTTGGAG+AGG + chr7.3:88378079-88378098 MS.gene79626:CDS 45.0%
!! TTGGCCCTTGATTTGGACAA+TGG + chr7.3:88377960-88377979 MS.gene79626:CDS 45.0%
ATATTACAGGAAGCTGGGCC+TGG + chr7.3:88379231-88379250 MS.gene79626:intron 50.0%
CAGTTGAGACCCCAACTACA+AGG - chr7.3:88378728-88378747 None:intergenic 50.0%
CATATGCTGGAGCTGCCATT+TGG + chr7.3:88377769-88377788 MS.gene79626:CDS 50.0%
CTAGCTGGAGGTGGAACATT+TGG + chr7.3:88379258-88379277 MS.gene79626:CDS 50.0%
CTCGAACCGGTGACATCTTA+TGG + chr7.3:88377706-88377725 MS.gene79626:CDS 50.0%
GACATGGTAACAACTCCAGC+AGG - chr7.3:88376921-88376940 None:intergenic 50.0%
GCCTCTCCAAAATCTGCATC+TGG - chr7.3:88378083-88378102 None:intergenic 50.0%
GCGACAATGGAACCCTTCAA+TGG + chr7.3:88378192-88378211 MS.gene79626:CDS 50.0%
GCTGGAGTTGTTACCATGTC+TGG + chr7.3:88376921-88376940 MS.gene79626:CDS 50.0%
GCTTGTTTGGCTGACCCATT+TGG + chr7.3:88376887-88376906 MS.gene79626:CDS 50.0%
GGAAGGACTACTTCCCCAAA+TGG - chr7.3:88377787-88377806 None:intergenic 50.0%
GTGGCAATGGATGCTAGCAA+TGG + chr7.3:88379384-88379403 MS.gene79626:CDS 50.0%
! GGAGAACTGGTGAGCTTGTT+TGG + chr7.3:88376874-88376893 MS.gene79626:CDS 50.0%
! TATGCTGGAGCTGCCATTTG+GGG + chr7.3:88377771-88377790 MS.gene79626:CDS 50.0%
AGGGAGTCCCCGTACTTGAT+TGG - chr7.3:88377502-88377521 None:intergenic 55.0%
ATCTGGAGGATGGGTGGCAA+TGG + chr7.3:88379371-88379390 MS.gene79626:CDS 55.0%
CACAACATCTGGAGGATGGG+TGG + chr7.3:88379365-88379384 MS.gene79626:CDS 55.0%
CGGGGCAGAGTAGAGATTTC+CGG - chr7.3:88377844-88377863 None:intergenic 55.0%
GAGACCCCAACTACAAGGTG+TGG - chr7.3:88378723-88378742 None:intergenic 55.0%
GGCAGAGTAGAGATTTCCGG+TGG - chr7.3:88377841-88377860 None:intergenic 55.0%
GGCTAGAGCAACTCCAACTG+TGG + chr7.3:88376794-88376813 MS.gene79626:CDS 55.0%
GTCCCCGTACTTGATTGGTG+AGG - chr7.3:88377497-88377516 None:intergenic 55.0%
TGCTAGTGGCCCTGTTAGTG+TGG + chr7.3:88379449-88379468 MS.gene79626:CDS 55.0%
!! TGGGCATTGGATCGCGACAA+TGG + chr7.3:88378179-88378198 MS.gene79626:CDS 55.0%
TTACAGGAAGCTGGGCCTGG+TGG + chr7.3:88379234-88379253 MS.gene79626:intron 60.0%
CCACCTCCAGCTAGTCCACC+AGG - chr7.3:88379252-88379271 None:intergenic 65.0%
!! CCTGGTGGACTAGCTGGAGG+TGG + chr7.3:88379249-88379268 MS.gene79626:CDS 65.0%
!! GCTGGGCCTGGTGGACTAGC+TGG + chr7.3:88379243-88379262 MS.gene79626:CDS 70.0%
!! GGGCCTGGTGGACTAGCTGG+AGG + chr7.3:88379246-88379265 MS.gene79626:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 88376520 88379695 88376520 ID=MS.gene79626
chr7.3 mRNA 88376520 88379695 88376520 ID=MS.gene79626.t1;Parent=MS.gene79626
chr7.3 exon 88376520 88376544 88376520 ID=MS.gene79626.t1.exon1;Parent=MS.gene79626.t1
chr7.3 CDS 88376520 88376544 88376520 ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1
chr7.3 exon 88376793 88376958 88376793 ID=MS.gene79626.t1.exon2;Parent=MS.gene79626.t1
chr7.3 CDS 88376793 88376958 88376793 ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1
chr7.3 exon 88377617 88378220 88377617 ID=MS.gene79626.t1.exon3;Parent=MS.gene79626.t1
chr7.3 CDS 88377617 88378220 88377617 ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1
chr7.3 exon 88379240 88379695 88379240 ID=MS.gene79626.t1.exon4;Parent=MS.gene79626.t1
chr7.3 CDS 88379240 88379695 88379240 ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1
Gene Sequence

>MS.gene79626

ATGGTGGAGATTTGTTCAATAGAAGGTATGGATACAAGGAACAAAAGATCAATATAGAAACGGTTCCTAAACTAAGTTTGAAGTGGAAATTCTATGCAAACAAAGATATTACAGCAACACCAACAATATACAATGGTACAATTTATTTTCCAAGCTGGAATGGTAACATATATGCAATTAAACAACTTGATGGGTCACTTGTTTGGAAGCAAAACTTGAAGAAATTGACAGGTTTAAATACAACTGGATTTATAATTAATGCAAATTGGACAGTGGCTAGAGCAACTCCAACTGTGGCTGAAGATTTATTGATTGTTGGAATTTATGGACCTGCTGTTGTTATTGGTCTTGAAAGGAGAACTGGTGAGCTTGTTTGGCTGACCCATTTGGATAATCATCCTGCTGGAGTTGTTACCATGTCTGGAACTTATTATAATGGGTTAGTATATAATTACATTCTCTTGCTCATGCTTCTTAATCTTCTTTCCAAATGTTTTAAAAATTGGATCATATTGGCTGGTTCAATTGATTGAACTAAGAATCAGCTAGTTCATCAGTTGGATTGTTCGTGGTCGGTTCAACTAGTTTTTACTTTTATTTACTTTTTGTTACTTTTTCACTTATACTTTTATACACTTGCTCAACAATAGTTGTGGTTGAACTGATTGAACTATGAATAAAGGTCTCGTCGATTTGATCTTCAGTACAATTTTGAAAATACTACTACTTCTTTAGGATTTTTTTATTGTTTGCACAGATGATATTTAAAGAGAAGTCTCATTCACCGTCTTCGAAAAAAAACTGCAAATCTAGTTTGGTCTCTATGTAGATTTTCTACCATCAAGTGGCTCGTGATTAATGCAATTTGTTTGTGATTTCGCGTTATTTGTAGAGATCGGAAACCAAGAAGAAAATACTTATGATCAATATATTTTTGTTTGGAGTATCATAATACATTGAAAGAATTTATCTAACCTCACCAATCAAGTACGGGGACTCCCTTAAAAGAAATCAAGTTTGGGACTATCATTCATTCCTTTTTTTCTTTTCGACCCTTTTATATCAAAGTATAATTATGTTAAACTCTCAATATATAGGAGTTACTATGTTGGAACATCTTCACTAGAAGAAGGTGCAACCATTGAAGATTGTTGCATATTTCGTGGAAGCCTTGTAAAACTTGATGCTCGAACCGGTGACATCTTATGGAAAACATATATGTTACCGGATAATAACGGAAAGATAGGAGCATATGCTGGAGCTGCCATTTGGGGAAGTAGTCCTTCCATTGATGTTTATCGAAAACATGTCTATATTGCCACCGGAAATCTCTACTCTGCCCCGAAAAATGTACTCGAATGTCAAGAAAGACAAGATAATCAAACTACTCCTATTGAACAAGACAAGTGTGTTGAACCAGAAAACCACTCAAATTCAATCTTGGCCCTTGATTTGGACAATGGTAATATCAAATGGTACAAACAATTAGGAGGATATGATGTATGGTTCGTTTCATGTAACAATGCTTCAATTTCTAATTGTCCACCTCAAGGTTCTATACCAGATGCAGATTTTGGAGAGGCACCAATGATGTTAACTACACATGTAAATGGAACTAAGAAAGATATTGTTGTTGCTGTTCAGAAAAGTGGATTTGCTTGGGCATTGGATCGCGACAATGGAACCCTTCAATGGTTTACGGTAATATACACTAAATTTGATCGTCTTTTAAATGATGTTTTTGTTAGAGCAAGCTGAAACTCACTGGAATTTTCTTGTATTGCACTCAATCACAATTTCACTTAGGTTGAATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTATGAATGGAAATCATACACTTCACTGCTTTGTTTATTCACTTGTAATCATAACAACTCTAACTACCATAACAAAGAATATCCTACAAAAGTTGTTGCTTGCACAACAAGAAAACTTTTAGTTGACTAGTTTTGAATTAACTCTTAACATTCATTTGTAGAAAAAATTTGTTTATATTTATTTATCATTTTTAAATGTTCAGTACAATATTAACTATGATTTTGATATGTTCGTGACTCCGCCAACACCACCTTCTGTTTTAGTTTCTGTTTGGATTTCAGCTCGGGTTAGTGCTGATCAATTATCATTTCGATTTGACATAAAATTCCACACCTTGTAGTTGGGGTCTCAACTGCGATTAGCATTGACCCAAATTAGTTTGAAGTTGTGACATTTTCTAGTTTGAATTTCAGCCGCTACAAATGCTAGCCTAGTACGAAGTTTTTAGGGATCGAACTTCCGCTCACTTATATGGGTCAAAATTCCTTACTACTTGAACTAGTTCATTGTTAATATGCAAGATGTCTTTTCTAGGTCTTAGTATGTCATGTTTTTTTCAACCTTAAAGGTATATGCATACTTGTAACAACTTAAAAGTTGTTAGCTTGAGGAGGAGTGTTTACATATAAGAAAAAAGTCTAATAATATCGTTGATATTGTATAAGAGTATTTAGTTTAATCATTTTGTATGATCATTTTACAATTATAGAGTGGAGTATATTGAATTAACTCTTAATATTTTGCTCAAAAATATAATAGATTAGTTCTTCTTATTGATAAATATAAATCAATTAAACATGATCTTAAACGCAATAGCTAATTTAACTATGAGCTAAAAATATTACAGGAAGCTGGGCCTGGTGGACTAGCTGGAGGTGGAACATTTGGTGCATCAACCGACGAAAAAAGAATTTATACCAATATTGCAAATTCAGATGCCAAAATTTTCAAACTTTTACCATCAAATATGAACACAACATCTGGAGGATGGGTGGCAATGGATGCTAGCAATGGAACAATTCTATGGTCTACAGCTAACCCTAGCATTAATAGTACTGCTAGTGGCCCTGTTAGTGTGGCAAATGAAGTTGTTTTTGTTGGATCCACAGATAGATTGGGACACATTTATGCAATTAATGGAAGAAATGGACATATTTTATGGTCATATGAAACTGGAGCTAGTGTTTATGGGGGTATGTCAATTAGTAATGGATGTGTTTATGTGGGTCATGGATATAATGTCTCTCTAGGATTCTATTCTAACTATACGGGTGGAACCTCACTCTTTGCCTTTTGTGTCTAA

Protein sequence

>MS.gene79626.t1

MVEICSIEVARATPTVAEDLLIVGIYGPAVVIGLERRTGELVWLTHLDNHPAGVVTMSGTYYNGSYYVGTSSLEEGATIEDCCIFRGSLVKLDARTGDILWKTYMLPDNNGKIGAYAGAAIWGSSPSIDVYRKHVYIATGNLYSAPKNVLECQERQDNQTTPIEQDKCVEPENHSNSILALDLDNGNIKWYKQLGGYDVWFVSCNNASISNCPPQGSIPDADFGEAPMMLTTHVNGTKKDIVVAVQKSGFAWALDRDNGTLQWFTEAGPGGLAGGGTFGASTDEKRIYTNIANSDAKIFKLLPSNMNTTSGGWVAMDASNGTILWSTANPSINSTASGPVSVANEVVFVGSTDRLGHIYAINGRNGHILWSYETGASVYGGMSISNGCVYVGHGYNVSLGFYSNYTGGTSLFAFCV