Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79626.t1 | RHN44214.1 | 98 | 408 | 8 | 0 | 9 | 416 | 163 | 570 | 7.80E-237 | 829.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79626.t1 | Q588Z1 | 30.8 | 432 | 211 | 18 | 32 | 416 | 261 | 651 | 2.5e-34 | 147.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79626.t1 | G7KZV4 | 98.0 | 408 | 8 | 0 | 9 | 416 | 121 | 528 | 5.6e-237 | 829.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051138 | MS.gene79626 | 0.809213 | 2.11E-50 | -1.69E-46 |
MS.gene05240 | MS.gene79626 | 0.847618 | 1.03E-59 | -1.69E-46 |
MS.gene052702 | MS.gene79626 | 0.807006 | 6.24E-50 | -1.69E-46 |
MS.gene053031 | MS.gene79626 | 0.806134 | 9.53E-50 | -1.69E-46 |
MS.gene053033 | MS.gene79626 | 0.808662 | 2.77E-50 | -1.69E-46 |
MS.gene053420 | MS.gene79626 | 0.802328 | 5.91E-49 | -1.69E-46 |
MS.gene054742 | MS.gene79626 | 0.822282 | 2.57E-53 | -1.69E-46 |
MS.gene05483 | MS.gene79626 | 0.804894 | 1.73E-49 | -1.69E-46 |
MS.gene056218 | MS.gene79626 | 0.802679 | 5.00E-49 | -1.69E-46 |
MS.gene056590 | MS.gene79626 | 0.808622 | 2.83E-50 | -1.69E-46 |
MS.gene056591 | MS.gene79626 | 0.810241 | 1.27E-50 | -1.69E-46 |
MS.gene056748 | MS.gene79626 | 0.804642 | 1.96E-49 | -1.69E-46 |
MS.gene056856 | MS.gene79626 | 0.816348 | 5.79E-52 | -1.69E-46 |
MS.gene056920 | MS.gene79626 | 0.813736 | 2.20E-51 | -1.69E-46 |
MS.gene057544 | MS.gene79626 | 0.814507 | 1.49E-51 | -1.69E-46 |
MS.gene057549 | MS.gene79626 | 0.801303 | 9.60E-49 | -1.69E-46 |
MS.gene058099 | MS.gene79626 | 0.812607 | 3.89E-51 | -1.69E-46 |
MS.gene059953 | MS.gene79626 | 0.827967 | 1.17E-54 | -1.69E-46 |
MS.gene059955 | MS.gene79626 | 0.804067 | 2.58E-49 | -1.69E-46 |
MS.gene060087 | MS.gene79626 | 0.815586 | 8.57E-52 | -1.69E-46 |
MS.gene061038 | MS.gene79626 | 0.804212 | 2.41E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79626.t1 | MTR_7g009780 | 98.039 | 408 | 8 | 0 | 9 | 416 | 121 | 528 | 0.0 | 825 |
MS.gene79626.t1 | MTR_7g009820 | 70.633 | 395 | 110 | 4 | 9 | 399 | 129 | 521 | 0.0 | 536 |
MS.gene79626.t1 | MTR_7g009760 | 53.968 | 252 | 88 | 7 | 185 | 416 | 83 | 326 | 1.52e-70 | 225 |
MS.gene79626.t1 | MTR_7g009760 | 84.375 | 64 | 10 | 0 | 1 | 64 | 113 | 176 | 3.20e-29 | 116 |
MS.gene79626.t1 | MTR_7g009830 | 56.757 | 74 | 32 | 0 | 316 | 389 | 1 | 74 | 1.34e-17 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 108 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATTGATTGTTGGAATTTA+TGG | 0.078772 | 7.3:+88376825 | MS.gene79626:CDS |
TGGTAAAAGTTTGAAAATTT+TGG | 0.149572 | 7.3:-88379331 | None:intergenic |
TCTATACCAGATGCAGATTT+TGG | 0.178689 | 7.3:+88378074 | MS.gene79626:CDS |
GGCATCTGAATTTGCAATAT+TGG | 0.192813 | 7.3:-88379310 | None:intergenic |
GAAACTGGAGCTAGTGTTTA+TGG | 0.194173 | 7.3:+88379561 | MS.gene79626:CDS |
GGACACATTTATGCAATTAA+TGG | 0.201030 | 7.3:+88379510 | MS.gene79626:CDS |
ATGTCTGGAACTTATTATAA+TGG | 0.252608 | 7.3:+88376936 | MS.gene79626:CDS |
CTCGAACCGGTGACATCTTA+TGG | 0.254463 | 7.3:+88377706 | MS.gene79626:CDS |
TTCAATCTTGGCCCTTGATT+TGG | 0.257115 | 7.3:+88377953 | MS.gene79626:CDS |
AGGATTCTATTCTAACTATA+CGG | 0.264601 | 7.3:+88379641 | MS.gene79626:CDS |
CGGGGCAGAGTAGAGATTTC+CGG | 0.267339 | 7.3:-88377841 | None:intergenic |
ATGTTAACTACACATGTAAA+TGG | 0.274129 | 7.3:+88378110 | MS.gene79626:CDS |
ACTTCATTTGCCACACTAAC+AGG | 0.279058 | 7.3:-88379459 | None:intergenic |
GCTGGGCCTGGTGGACTAGC+TGG | 0.298475 | 7.3:+88379243 | MS.gene79626:CDS |
TATGGACCTGCTGTTGTTAT+TGG | 0.299331 | 7.3:+88376843 | MS.gene79626:CDS |
GGAGAACTGGTGAGCTTGTT+TGG | 0.317549 | 7.3:+88376874 | MS.gene79626:CDS |
ACACACTTGTCTTGTTCAAT+AGG | 0.329135 | 7.3:-88377909 | None:intergenic |
GATGTTGTGTTCATATTTGA+TGG | 0.359013 | 7.3:-88379351 | None:intergenic |
TATGCAATTAATGGAAGAAA+TGG | 0.360213 | 7.3:+88379519 | MS.gene79626:CDS |
ATATGCTGGAGCTGCCATTT+GGG | 0.362982 | 7.3:+88377770 | MS.gene79626:CDS |
TGTTGGATCCACAGATAGAT+TGG | 0.364449 | 7.3:+88379488 | MS.gene79626:CDS |
ATCAAATGGTACAAACAATT+AGG | 0.373006 | 7.3:+88377987 | MS.gene79626:CDS |
CATATGCTGGAGCTGCCATT+TGG | 0.379478 | 7.3:+88377769 | MS.gene79626:CDS |
TGTCTGGAACTTATTATAAT+GGG | 0.380311 | 7.3:+88376937 | MS.gene79626:CDS |
GCTGGAGTTGTTACCATGTC+TGG | 0.385868 | 7.3:+88376921 | MS.gene79626:CDS |
GTGGAGATTTGTTCAATAGA+AGG | 0.386676 | 7.3:+88376523 | MS.gene79626:CDS |
CAGCAGGATGATTATCCAAA+TGG | 0.392967 | 7.3:-88376902 | None:intergenic |
ATGGAAAACATATATGTTAC+CGG | 0.395049 | 7.3:+88377725 | MS.gene79626:CDS |
ACATGTGTAGTTAACATCAT+TGG | 0.398269 | 7.3:-88378104 | None:intergenic |
TCAAATATGAACACAACATC+TGG | 0.400754 | 7.3:+88379354 | MS.gene79626:CDS |
TGGAACCCTTCAATGGTTTA+CGG | 0.406717 | 7.3:+88378199 | MS.gene79626:CDS |
AAACTGGAGCTAGTGTTTAT+GGG | 0.412511 | 7.3:+88379562 | MS.gene79626:CDS |
CTAGCTGGAGGTGGAACATT+TGG | 0.415102 | 7.3:+88379258 | MS.gene79626:CDS |
CCTATCTTTCCGTTATTATC+CGG | 0.416153 | 7.3:-88377744 | None:intergenic |
CTAGCAATGGAACAATTCTA+TGG | 0.419731 | 7.3:+88379397 | MS.gene79626:CDS |
GCTGAAGATTTATTGATTGT+TGG | 0.421980 | 7.3:+88376816 | MS.gene79626:CDS |
GCTTGTTTGGCTGACCCATT+TGG | 0.432883 | 7.3:+88376887 | MS.gene79626:CDS |
CCTGGTGGACTAGCTGGAGG+TGG | 0.437639 | 7.3:+88379249 | MS.gene79626:CDS |
TATTACCATTGTCCAAATCA+AGG | 0.441095 | 7.3:-88377965 | None:intergenic |
TTCAGAAAAGTGGATTTGCT+TGG | 0.442678 | 7.3:+88378159 | MS.gene79626:CDS |
GCCTCTCCAAAATCTGCATC+TGG | 0.444115 | 7.3:-88378080 | None:intergenic |
TCAGAAAAGTGGATTTGCTT+GGG | 0.453665 | 7.3:+88378160 | MS.gene79626:CDS |
ATCTGGAGGATGGGTGGCAA+TGG | 0.457177 | 7.3:+88379371 | MS.gene79626:CDS |
AAACCACTCAAATTCAATCT+TGG | 0.459032 | 7.3:+88377941 | MS.gene79626:CDS |
GAAGATTGTTGCATATTTCG+TGG | 0.462258 | 7.3:+88377663 | MS.gene79626:CDS |
GTTGGATCCACAGATAGATT+GGG | 0.468552 | 7.3:+88379489 | MS.gene79626:CDS |
CCGGATAATAACGGAAAGAT+AGG | 0.470878 | 7.3:+88377744 | MS.gene79626:CDS |
GCGACAATGGAACCCTTCAA+TGG | 0.471588 | 7.3:+88378192 | MS.gene79626:CDS |
AAGTGGATTTGCTTGGGCAT+TGG | 0.476012 | 7.3:+88378166 | MS.gene79626:CDS |
GTTGTTGCTGTTCAGAAAAG+TGG | 0.490333 | 7.3:+88378149 | MS.gene79626:CDS |
ATATTACCGTAAACCATTGA+AGG | 0.491331 | 7.3:-88378205 | None:intergenic |
CTAGCAGTACTATTAATGCT+AGG | 0.491777 | 7.3:-88379432 | None:intergenic |
ATTGGTCTTGAAAGGAGAAC+TGG | 0.494135 | 7.3:+88376861 | MS.gene79626:CDS |
GTAAAACTTGATGCTCGAAC+CGG | 0.495278 | 7.3:+88377693 | MS.gene79626:CDS |
CCACCTCCAGCTAGTCCACC+AGG | 0.496549 | 7.3:-88379249 | None:intergenic |
ATAAAATCTTTAGACACAAA+AGG | 0.500433 | 7.3:-88379682 | None:intergenic |
TGGACAATGGTAATATCAAA+TGG | 0.505834 | 7.3:+88377973 | MS.gene79626:CDS |
CATTTGGATAATCATCCTGC+TGG | 0.512194 | 7.3:+88376903 | MS.gene79626:CDS |
AAATATGCAACAATCTTCAA+TGG | 0.513224 | 7.3:-88377658 | None:intergenic |
ATATTACAGGAAGCTGGGCC+TGG | 0.515009 | 7.3:+88379231 | MS.gene79626:intron |
AGCAGGATGATTATCCAAAT+GGG | 0.521030 | 7.3:-88376901 | None:intergenic |
CATGGATATAATGTCTCTCT+AGG | 0.525419 | 7.3:+88379621 | MS.gene79626:CDS |
AATTAGGAGGATATGATGTA+TGG | 0.528476 | 7.3:+88378003 | MS.gene79626:CDS |
TTGGCCCTTGATTTGGACAA+TGG | 0.532301 | 7.3:+88377960 | MS.gene79626:CDS |
TAGTAATGGATGTGTTTATG+TGG | 0.532402 | 7.3:+88379596 | MS.gene79626:CDS |
CTGTTGTTATTGGTCTTGAA+AGG | 0.533524 | 7.3:+88376853 | MS.gene79626:CDS |
GGAAGGACTACTTCCCCAAA+TGG | 0.534598 | 7.3:-88377784 | None:intergenic |
GGATTCTATTCTAACTATAC+GGG | 0.541048 | 7.3:+88379642 | MS.gene79626:CDS |
GGGCCTGGTGGACTAGCTGG+AGG | 0.547307 | 7.3:+88379246 | MS.gene79626:CDS |
TGAACACAACATCTGGAGGA+TGG | 0.555417 | 7.3:+88379361 | MS.gene79626:CDS |
TATGCTGGAGCTGCCATTTG+GGG | 0.558718 | 7.3:+88377771 | MS.gene79626:CDS |
ATTTCTAATTGTCCACCTCA+AGG | 0.560988 | 7.3:+88378050 | MS.gene79626:CDS |
GGGCCAAGATTGAATTTGAG+TGG | 0.564062 | 7.3:-88377944 | None:intergenic |
AATAAATCTTCAGCCACAGT+TGG | 0.564438 | 7.3:-88376807 | None:intergenic |
GGAAAGATAGGAGCATATGC+TGG | 0.567341 | 7.3:+88377756 | MS.gene79626:CDS |
TGCTAGTGGCCCTGTTAGTG+TGG | 0.568976 | 7.3:+88379449 | MS.gene79626:CDS |
GGATGTGTTTATGTGGGTCA+TGG | 0.572048 | 7.3:+88379603 | MS.gene79626:CDS |
TGGGCATTGGATCGCGACAA+TGG | 0.572247 | 7.3:+88378179 | MS.gene79626:CDS |
TAGCAGTACTATTAATGCTA+GGG | 0.574326 | 7.3:-88379431 | None:intergenic |
GACATGGTAACAACTCCAGC+AGG | 0.576037 | 7.3:-88376918 | None:intergenic |
TCAAGACCAATAACAACAGC+AGG | 0.576150 | 7.3:-88376849 | None:intergenic |
GAACACAACATCTGGAGGAT+GGG | 0.578899 | 7.3:+88379362 | MS.gene79626:CDS |
AACTGGAGCTAGTGTTTATG+GGG | 0.580406 | 7.3:+88379563 | MS.gene79626:CDS |
TATTACCGTAAACCATTGAA+GGG | 0.582362 | 7.3:-88378204 | None:intergenic |
TATATGTTACCGGATAATAA+CGG | 0.583087 | 7.3:+88377735 | MS.gene79626:CDS |
CACAACATCTGGAGGATGGG+TGG | 0.584419 | 7.3:+88379365 | MS.gene79626:CDS |
TTTCGATAAACATCAATGGA+AGG | 0.586957 | 7.3:-88377801 | None:intergenic |
GGCTAGAGCAACTCCAACTG+TGG | 0.587661 | 7.3:+88376794 | MS.gene79626:CDS |
ATTACCATTGTCCAAATCAA+GGG | 0.590906 | 7.3:-88377964 | None:intergenic |
ATATATAGGAGTTACTATGT+TGG | 0.592038 | 7.3:+88377609 | MS.gene79626:intron |
GGAACATCTTCACTAGAAGA+AGG | 0.592079 | 7.3:+88377630 | MS.gene79626:CDS |
GACACAAAAGGCAAAGAGTG+AGG | 0.592209 | 7.3:-88379670 | None:intergenic |
AAACATGTCTATATTGCCAC+CGG | 0.596786 | 7.3:+88377822 | MS.gene79626:CDS |
AGTAATGGATGTGTTTATGT+GGG | 0.600881 | 7.3:+88379597 | MS.gene79626:CDS |
CTTCATTTGCCACACTAACA+GGG | 0.602466 | 7.3:-88379458 | None:intergenic |
AAATGGTACAAACAATTAGG+AGG | 0.607059 | 7.3:+88377990 | MS.gene79626:CDS |
TTCTATTCTAACTATACGGG+TGG | 0.616004 | 7.3:+88379645 | MS.gene79626:CDS |
TTACAGGAAGCTGGGCCTGG+TGG | 0.618989 | 7.3:+88379234 | MS.gene79626:intron |
TATTGAACAAATCTCCACCA+TGG | 0.646101 | 7.3:-88376518 | None:intergenic |
AATATGAACACAACATCTGG+AGG | 0.652641 | 7.3:+88379357 | MS.gene79626:CDS |
AATGTGTCCCAATCTATCTG+TGG | 0.653384 | 7.3:-88379496 | None:intergenic |
GTGGCAATGGATGCTAGCAA+TGG | 0.660877 | 7.3:+88379384 | MS.gene79626:CDS |
AGCATTAATAGTACTGCTAG+TGG | 0.666802 | 7.3:+88379435 | MS.gene79626:CDS |
TCTGGTATAGAACCTTGAGG+TGG | 0.699068 | 7.3:-88378062 | None:intergenic |
GGCAGAGTAGAGATTTCCGG+TGG | 0.703544 | 7.3:-88377838 | None:intergenic |
ATTATAATAAGTTCCAGACA+TGG | 0.711222 | 7.3:-88376934 | None:intergenic |
GCATCTGGTATAGAACCTTG+AGG | 0.720540 | 7.3:-88378065 | None:intergenic |
ACTGGAGCTAGTGTTTATGG+GGG | 0.731779 | 7.3:+88379564 | MS.gene79626:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATACTTTGATATAAAA+GGG | - | chr7.3:88377575-88377594 | None:intergenic | 10.0% |
!! | TAATTATACTTTGATATAAA+AGG | - | chr7.3:88377576-88377595 | None:intergenic | 10.0% |
!! | GATTTATAATTAATGCAAAT+TGG | + | chr7.3:88376766-88376785 | MS.gene79626:intron | 15.0% |
!!! | ATGATCAATATATTTTTGTT+TGG | + | chr7.3:88377439-88377458 | MS.gene79626:intron | 15.0% |
!!! | TTTCCAAATGTTTTAAAAAT+TGG | + | chr7.3:88377003-88377022 | MS.gene79626:intron | 15.0% |
!!! | TTTTAAAAATTGGATCATAT+TGG | + | chr7.3:88377013-88377032 | MS.gene79626:intron | 15.0% |
!! | ACAAAAGATCAATATAGAAA+CGG | + | chr7.3:88376560-88376579 | MS.gene79626:intron | 20.0% |
!! | ATGTTAAACTCTCAATATAT+AGG | + | chr7.3:88377595-88377614 | MS.gene79626:intron | 20.0% |
!!! | ATCATTTTACAATTATAGAG+TGG | + | chr7.3:88379084-88379103 | MS.gene79626:intron | 20.0% |
!!! | GATCCAATTTTTAAAACATT+TGG | - | chr7.3:88377009-88377028 | None:intergenic | 20.0% |
!!! | TGGTAAAAGTTTGAAAATTT+TGG | - | chr7.3:88379334-88379353 | None:intergenic | 20.0% |
!!! | TTATTGATTGTTGGAATTTA+TGG | + | chr7.3:88376825-88376844 | MS.gene79626:CDS | 20.0% |
! | AAAAAACTGCAAATCTAGTT+TGG | + | chr7.3:88377315-88377334 | MS.gene79626:intron | 25.0% |
! | AAATATGCAACAATCTTCAA+TGG | - | chr7.3:88377661-88377680 | None:intergenic | 25.0% |
! | ACTGATTGAACTATGAATAA+AGG | + | chr7.3:88377180-88377199 | MS.gene79626:intron | 25.0% |
! | AGGATTCTATTCTAACTATA+CGG | + | chr7.3:88379641-88379660 | MS.gene79626:CDS | 25.0% |
! | ATATATAGGAGTTACTATGT+TGG | + | chr7.3:88377609-88377628 | MS.gene79626:intron | 25.0% |
! | ATCAAATGGTACAAACAATT+AGG | + | chr7.3:88377987-88378006 | MS.gene79626:CDS | 25.0% |
! | ATGCAATTAAACAACTTGAT+GGG | + | chr7.3:88376691-88376710 | MS.gene79626:intron | 25.0% |
! | ATGGAAAACATATATGTTAC+CGG | + | chr7.3:88377725-88377744 | MS.gene79626:CDS | 25.0% |
! | ATGTTAACTACACATGTAAA+TGG | + | chr7.3:88378110-88378129 | MS.gene79626:CDS | 25.0% |
! | ATTATAATAAGTTCCAGACA+TGG | - | chr7.3:88376937-88376956 | None:intergenic | 25.0% |
! | ATTGTACCATTGTATATTGT+TGG | - | chr7.3:88376642-88376661 | None:intergenic | 25.0% |
! | CCTTAAAAGAAATCAAGTTT+GGG | + | chr7.3:88377519-88377538 | MS.gene79626:intron | 25.0% |
! | CTATGAGCTAAAAATATTAC+AGG | + | chr7.3:88379218-88379237 | MS.gene79626:intron | 25.0% |
! | GAAAATACTACTACTTCTTT+AGG | + | chr7.3:88377233-88377252 | MS.gene79626:intron | 25.0% |
! | TAAAAATATTACAGGAAGCT+GGG | + | chr7.3:88379226-88379245 | MS.gene79626:intron | 25.0% |
! | TATATGTTACCGGATAATAA+CGG | + | chr7.3:88377735-88377754 | MS.gene79626:CDS | 25.0% |
! | TATGCAATTAAACAACTTGA+TGG | + | chr7.3:88376690-88376709 | MS.gene79626:intron | 25.0% |
! | TATGCAATTAATGGAAGAAA+TGG | + | chr7.3:88379519-88379538 | MS.gene79626:CDS | 25.0% |
! | TCACAACTTCAAACTAATTT+GGG | - | chr7.3:88378764-88378783 | None:intergenic | 25.0% |
! | TTGTAGGATATTCTTTGTTA+TGG | - | chr7.3:88378461-88378480 | None:intergenic | 25.0% |
!! | ATGTCTGGAACTTATTATAA+TGG | + | chr7.3:88376936-88376955 | MS.gene79626:CDS | 25.0% |
!! | ATGTTTTCGATAAACATCAA+TGG | - | chr7.3:88377808-88377827 | None:intergenic | 25.0% |
!! | ATTTTATGGTCATATGAAAC+TGG | + | chr7.3:88379546-88379565 | MS.gene79626:CDS | 25.0% |
!! | CCAAACTTGATTTCTTTTAA+GGG | - | chr7.3:88377521-88377540 | None:intergenic | 25.0% |
!! | GAAGAAATGGACATATTTTA+TGG | + | chr7.3:88379532-88379551 | MS.gene79626:CDS | 25.0% |
!! | GATCATAAGTATTTTCTTCT+TGG | - | chr7.3:88377425-88377444 | None:intergenic | 25.0% |
!! | TGTCTGGAACTTATTATAAT+GGG | + | chr7.3:88376937-88376956 | MS.gene79626:CDS | 25.0% |
!!! | CATGTTTTTTTCAACCTTAA+AGG | + | chr7.3:88378939-88378958 | MS.gene79626:intron | 25.0% |
!!! | GGTATAAATTCTTTTTTCGT+CGG | - | chr7.3:88379292-88379311 | None:intergenic | 25.0% |
AAAAATTGGATCATATTGGC+TGG | + | chr7.3:88377017-88377036 | MS.gene79626:intron | 30.0% | |
AAACCACTCAAATTCAATCT+TGG | + | chr7.3:88377941-88377960 | MS.gene79626:CDS | 30.0% | |
AAAGGGTCGAAAAGAAAAAA+AGG | - | chr7.3:88377558-88377577 | None:intergenic | 30.0% | |
AAATGGTACAAACAATTAGG+AGG | + | chr7.3:88377990-88378009 | MS.gene79626:CDS | 30.0% | |
AATTAATGCAAATTGGACAG+TGG | + | chr7.3:88376773-88376792 | MS.gene79626:intron | 30.0% | |
AATTAGGAGGATATGATGTA+TGG | + | chr7.3:88378003-88378022 | MS.gene79626:CDS | 30.0% | |
ACATGTGTAGTTAACATCAT+TGG | - | chr7.3:88378107-88378126 | None:intergenic | 30.0% | |
ACTCAATCACAATTTCACTT+AGG | + | chr7.3:88378304-88378323 | MS.gene79626:intron | 30.0% | |
ATATTACCGTAAACCATTGA+AGG | - | chr7.3:88378208-88378227 | None:intergenic | 30.0% | |
ATGAACTAGTTCAAGTAGTA+AGG | - | chr7.3:88378880-88378899 | None:intergenic | 30.0% | |
ATTACCATTGTCCAAATCAA+GGG | - | chr7.3:88377967-88377986 | None:intergenic | 30.0% | |
CAAAACTTGAAGAAATTGAC+AGG | + | chr7.3:88376729-88376748 | MS.gene79626:intron | 30.0% | |
CAAACAGAAACTAAAACAGA+AGG | - | chr7.3:88378646-88378665 | None:intergenic | 30.0% | |
CAAGTATGCATATACCTTTA+AGG | - | chr7.3:88378956-88378975 | None:intergenic | 30.0% | |
CCCTTAAAAGAAATCAAGTT+TGG | + | chr7.3:88377518-88377537 | MS.gene79626:intron | 30.0% | |
CTAAAAATATTACAGGAAGC+TGG | + | chr7.3:88379225-88379244 | MS.gene79626:intron | 30.0% | |
GATGTTGTGTTCATATTTGA+TGG | - | chr7.3:88379354-88379373 | None:intergenic | 30.0% | |
GGACACATTTATGCAATTAA+TGG | + | chr7.3:88379510-88379529 | MS.gene79626:CDS | 30.0% | |
GGATTCTATTCTAACTATAC+GGG | + | chr7.3:88379642-88379661 | MS.gene79626:CDS | 30.0% | |
GTCACAACTTCAAACTAATT+TGG | - | chr7.3:88378765-88378784 | None:intergenic | 30.0% | |
TAGCAGTACTATTAATGCTA+GGG | - | chr7.3:88379434-88379453 | None:intergenic | 30.0% | |
TATTACCATTGTCCAAATCA+AGG | - | chr7.3:88377968-88377987 | None:intergenic | 30.0% | |
TATTACCGTAAACCATTGAA+GGG | - | chr7.3:88378207-88378226 | None:intergenic | 30.0% | |
TCAAATATGAACACAACATC+TGG | + | chr7.3:88379354-88379373 | MS.gene79626:CDS | 30.0% | |
TGGACAATGGTAATATCAAA+TGG | + | chr7.3:88377973-88377992 | MS.gene79626:CDS | 30.0% | |
TTCCACTTCAAACTTAGTTT+AGG | - | chr7.3:88376588-88376607 | None:intergenic | 30.0% | |
TTCCTAAACTAAGTTTGAAG+TGG | + | chr7.3:88376583-88376602 | MS.gene79626:intron | 30.0% | |
TTGACAGGTTTAAATACAAC+TGG | + | chr7.3:88376744-88376763 | MS.gene79626:intron | 30.0% | |
TTTCGATAAACATCAATGGA+AGG | - | chr7.3:88377804-88377823 | None:intergenic | 30.0% | |
! | ACTTAAAAGTTGTTAGCTTG+AGG | + | chr7.3:88378981-88379000 | MS.gene79626:intron | 30.0% |
! | ATATGCAAGATGTCTTTTCT+AGG | + | chr7.3:88378905-88378924 | MS.gene79626:intron | 30.0% |
! | ATTGAATTTGAGTGGTTTTC+TGG | - | chr7.3:88377939-88377958 | None:intergenic | 30.0% |
! | CCCAAACTTGATTTCTTTTA+AGG | - | chr7.3:88377522-88377541 | None:intergenic | 30.0% |
! | GATTTGTTCAATAGAAGGTA+TGG | + | chr7.3:88376528-88376547 | MS.gene79626:intron | 30.0% |
! | GCTGAAGATTTATTGATTGT+TGG | + | chr7.3:88376816-88376835 | MS.gene79626:CDS | 30.0% |
! | TGACATTCGAGTACATTTTT+CGG | - | chr7.3:88377864-88377883 | None:intergenic | 30.0% |
!! | AGTAATGGATGTGTTTATGT+GGG | + | chr7.3:88379597-88379616 | MS.gene79626:CDS | 30.0% |
!! | ATTTATTTTCCAAGCTGGAA+TGG | + | chr7.3:88376660-88376679 | MS.gene79626:intron | 30.0% |
!! | GTACAATTTATTTTCCAAGC+TGG | + | chr7.3:88376655-88376674 | MS.gene79626:intron | 30.0% |
!! | TAGTAATGGATGTGTTTATG+TGG | + | chr7.3:88379596-88379615 | MS.gene79626:CDS | 30.0% |
!!! | CTTCTGTTTTAGTTTCTGTT+TGG | + | chr7.3:88378644-88378663 | MS.gene79626:intron | 30.0% |
!!! | GCAAATGAAGTTGTTTTTGT+TGG | + | chr7.3:88379471-88379490 | MS.gene79626:CDS | 30.0% |
!!! | TTGCAGTTTTTTTTCGAAGA+CGG | - | chr7.3:88377307-88377326 | None:intergenic | 30.0% |
AAAATTCCACACCTTGTAGT+TGG | + | chr7.3:88378714-88378733 | MS.gene79626:intron | 35.0% | |
AAACATGTCTATATTGCCAC+CGG | + | chr7.3:88377822-88377841 | MS.gene79626:CDS | 35.0% | |
AAACTGGAGCTAGTGTTTAT+GGG | + | chr7.3:88379562-88379581 | MS.gene79626:CDS | 35.0% | |
AAATTCCACACCTTGTAGTT+GGG | + | chr7.3:88378715-88378734 | MS.gene79626:intron | 35.0% | |
AATAAATCTTCAGCCACAGT+TGG | - | chr7.3:88376810-88376829 | None:intergenic | 35.0% | |
AATATGAACACAACATCTGG+AGG | + | chr7.3:88379357-88379376 | MS.gene79626:CDS | 35.0% | |
ACAGAAACTAAAACAGAAGG+TGG | - | chr7.3:88378643-88378662 | None:intergenic | 35.0% | |
AGCAGGATGATTATCCAAAT+GGG | - | chr7.3:88376904-88376923 | None:intergenic | 35.0% | |
AGCATTAATAGTACTGCTAG+TGG | + | chr7.3:88379435-88379454 | MS.gene79626:CDS | 35.0% | |
ATCCCTAAAAACTTCGTACT+AGG | - | chr7.3:88378825-88378844 | None:intergenic | 35.0% | |
ATTTCTAATTGTCCACCTCA+AGG | + | chr7.3:88378050-88378069 | MS.gene79626:CDS | 35.0% | |
CATGGATATAATGTCTCTCT+AGG | + | chr7.3:88379621-88379640 | MS.gene79626:CDS | 35.0% | |
CCTATCTTTCCGTTATTATC+CGG | - | chr7.3:88377747-88377766 | None:intergenic | 35.0% | |
CTAGCAATGGAACAATTCTA+TGG | + | chr7.3:88379397-88379416 | MS.gene79626:CDS | 35.0% | |
CTAGCAGTACTATTAATGCT+AGG | - | chr7.3:88379435-88379454 | None:intergenic | 35.0% | |
GAAGATTGTTGCATATTTCG+TGG | + | chr7.3:88377663-88377682 | MS.gene79626:CDS | 35.0% | |
GCAACACCAACAATATACAA+TGG | + | chr7.3:88376633-88376652 | MS.gene79626:intron | 35.0% | |
GGCATCTGAATTTGCAATAT+TGG | - | chr7.3:88379313-88379332 | None:intergenic | 35.0% | |
TATATGTTACCATTCCAGCT+TGG | - | chr7.3:88376672-88376691 | None:intergenic | 35.0% | |
TTCGCGTTATTTGTAGAGAT+CGG | + | chr7.3:88377396-88377415 | MS.gene79626:intron | 35.0% | |
TTCTATTCTAACTATACGGG+TGG | + | chr7.3:88379645-88379664 | MS.gene79626:CDS | 35.0% | |
TTTCTGTTTGGATTTCAGCT+CGG | + | chr7.3:88378656-88378675 | MS.gene79626:intron | 35.0% | |
! | ACACACTTGTCTTGTTCAAT+AGG | - | chr7.3:88377912-88377931 | None:intergenic | 35.0% |
! | ACATTCGAGTACATTTTTCG+GGG | - | chr7.3:88377862-88377881 | None:intergenic | 35.0% |
! | AGCCTAGTACGAAGTTTTTA+GGG | + | chr7.3:88378820-88378839 | MS.gene79626:intron | 35.0% |
! | CAATAGAAGGTATGGATACA+AGG | + | chr7.3:88376536-88376555 | MS.gene79626:intron | 35.0% |
! | GACATTCGAGTACATTTTTC+GGG | - | chr7.3:88377863-88377882 | None:intergenic | 35.0% |
! | GTAGATTTTCTACCATCAAG+TGG | + | chr7.3:88377345-88377364 | MS.gene79626:intron | 35.0% |
! | GTGGAGATTTGTTCAATAGA+AGG | + | chr7.3:88376523-88376542 | MS.gene79626:CDS | 35.0% |
! | TAAAAGTTGTTAGCTTGAGG+AGG | + | chr7.3:88378984-88379003 | MS.gene79626:intron | 35.0% |
! | TAGCCTAGTACGAAGTTTTT+AGG | + | chr7.3:88378819-88378838 | MS.gene79626:intron | 35.0% |
! | TCAGAAAAGTGGATTTGCTT+GGG | + | chr7.3:88378160-88378179 | MS.gene79626:CDS | 35.0% |
! | TCTATACCAGATGCAGATTT+TGG | + | chr7.3:88378074-88378093 | MS.gene79626:CDS | 35.0% |
! | TGTTTTCCATAAGATGTCAC+CGG | - | chr7.3:88377715-88377734 | None:intergenic | 35.0% |
! | TTCAGAAAAGTGGATTTGCT+TGG | + | chr7.3:88378159-88378178 | MS.gene79626:CDS | 35.0% |
! | TTCGAGCATCAAGTTTTACA+AGG | - | chr7.3:88377692-88377711 | None:intergenic | 35.0% |
! | TTTTGACCCATATAAGTGAG+CGG | - | chr7.3:88378855-88378874 | None:intergenic | 35.0% |
!! | CTGTTGTTATTGGTCTTGAA+AGG | + | chr7.3:88376853-88376872 | MS.gene79626:CDS | 35.0% |
AACTGGAGCTAGTGTTTATG+GGG | + | chr7.3:88379563-88379582 | MS.gene79626:CDS | 40.0% | |
AATGTGTCCCAATCTATCTG+TGG | - | chr7.3:88379499-88379518 | None:intergenic | 40.0% | |
AATTCCACACCTTGTAGTTG+GGG | + | chr7.3:88378716-88378735 | MS.gene79626:intron | 40.0% | |
ACTAAAACAGAAGGTGGTGT+TGG | - | chr7.3:88378637-88378656 | None:intergenic | 40.0% | |
ACTTCATTTGCCACACTAAC+AGG | - | chr7.3:88379462-88379481 | None:intergenic | 40.0% | |
ATTAATCACGAGCCACTTGA+TGG | - | chr7.3:88377360-88377379 | None:intergenic | 40.0% | |
CACTTGCTCAACAATAGTTG+TGG | + | chr7.3:88377153-88377172 | MS.gene79626:intron | 40.0% | |
CAGCAGGATGATTATCCAAA+TGG | - | chr7.3:88376905-88376924 | None:intergenic | 40.0% | |
CATTTGGATAATCATCCTGC+TGG | + | chr7.3:88376903-88376922 | MS.gene79626:CDS | 40.0% | |
CTAACCTCACCAATCAAGTA+CGG | + | chr7.3:88377490-88377509 | MS.gene79626:intron | 40.0% | |
CTTCATTTGCCACACTAACA+GGG | - | chr7.3:88379461-88379480 | None:intergenic | 40.0% | |
GAAACTGGAGCTAGTGTTTA+TGG | + | chr7.3:88379561-88379580 | MS.gene79626:CDS | 40.0% | |
GAACTTCCGCTCACTTATAT+GGG | + | chr7.3:88378846-88378865 | MS.gene79626:intron | 40.0% | |
GAATCAGCTAGTTCATCAGT+TGG | + | chr7.3:88377058-88377077 | MS.gene79626:intron | 40.0% | |
GGAACATCTTCACTAGAAGA+AGG | + | chr7.3:88377630-88377649 | MS.gene79626:CDS | 40.0% | |
GTAAAACTTGATGCTCGAAC+CGG | + | chr7.3:88377693-88377712 | MS.gene79626:CDS | 40.0% | |
GTTGGATCCACAGATAGATT+GGG | + | chr7.3:88379489-88379508 | MS.gene79626:CDS | 40.0% | |
TAACCTCACCAATCAAGTAC+GGG | + | chr7.3:88377491-88377510 | MS.gene79626:intron | 40.0% | |
TACTAGGCTAGCATTTGTAG+CGG | - | chr7.3:88378809-88378828 | None:intergenic | 40.0% | |
TATGGACCTGCTGTTGTTAT+TGG | + | chr7.3:88376843-88376862 | MS.gene79626:CDS | 40.0% | |
TCAAGACCAATAACAACAGC+AGG | - | chr7.3:88376852-88376871 | None:intergenic | 40.0% | |
TGGAACCCTTCAATGGTTTA+CGG | + | chr7.3:88378199-88378218 | MS.gene79626:CDS | 40.0% | |
TGTTGGATCCACAGATAGAT+TGG | + | chr7.3:88379488-88379507 | MS.gene79626:CDS | 40.0% | |
TTCAATCTTGGCCCTTGATT+TGG | + | chr7.3:88377953-88377972 | MS.gene79626:CDS | 40.0% | |
TTCATCAGTTGGATTGTTCG+TGG | + | chr7.3:88377069-88377088 | MS.gene79626:intron | 40.0% | |
TTCTGTTTGGATTTCAGCTC+GGG | + | chr7.3:88378657-88378676 | MS.gene79626:intron | 40.0% | |
! | AACTTGATGGGTCACTTGTT+TGG | + | chr7.3:88376703-88376722 | MS.gene79626:intron | 40.0% |
! | AGAGAGAGAGAGAGTATGAA+TGG | + | chr7.3:88378379-88378398 | MS.gene79626:intron | 40.0% |
! | CCGGATAATAACGGAAAGAT+AGG | + | chr7.3:88377744-88377763 | MS.gene79626:CDS | 40.0% |
! | GGGGGTATGTCAATTAGTAA+TGG | + | chr7.3:88379582-88379601 | MS.gene79626:CDS | 40.0% |
! | GTGCAAGCAACAACTTTTGT+AGG | - | chr7.3:88378477-88378496 | None:intergenic | 40.0% |
! | GTTGTTGCTGTTCAGAAAAG+TGG | + | chr7.3:88378149-88378168 | MS.gene79626:CDS | 40.0% |
!! | ATTGGTCTTGAAAGGAGAAC+TGG | + | chr7.3:88376861-88376880 | MS.gene79626:CDS | 40.0% |
AACCTCACCAATCAAGTACG+GGG | + | chr7.3:88377492-88377511 | MS.gene79626:intron | 45.0% | |
ACTGGAGCTAGTGTTTATGG+GGG | + | chr7.3:88379564-88379583 | MS.gene79626:CDS | 45.0% | |
CGAACTTCCGCTCACTTATA+TGG | + | chr7.3:88378845-88378864 | MS.gene79626:intron | 45.0% | |
GAACACAACATCTGGAGGAT+GGG | + | chr7.3:88379362-88379381 | MS.gene79626:CDS | 45.0% | |
GACACAAAAGGCAAAGAGTG+AGG | - | chr7.3:88379673-88379692 | None:intergenic | 45.0% | |
GCATCTGGTATAGAACCTTG+AGG | - | chr7.3:88378068-88378087 | None:intergenic | 45.0% | |
GGATGTGTTTATGTGGGTCA+TGG | + | chr7.3:88379603-88379622 | MS.gene79626:CDS | 45.0% | |
GGGCCAAGATTGAATTTGAG+TGG | - | chr7.3:88377947-88377966 | None:intergenic | 45.0% | |
TAGAGCAAGCTGAAACTCAC+TGG | + | chr7.3:88378265-88378284 | MS.gene79626:intron | 45.0% | |
TCAGTTGGATTGTTCGTGGT+CGG | + | chr7.3:88377073-88377092 | MS.gene79626:intron | 45.0% | |
TCTGGTATAGAACCTTGAGG+TGG | - | chr7.3:88378065-88378084 | None:intergenic | 45.0% | |
TGAACACAACATCTGGAGGA+TGG | + | chr7.3:88379361-88379380 | MS.gene79626:CDS | 45.0% | |
! | AAAACAGAAGGTGGTGTTGG+CGG | - | chr7.3:88378634-88378653 | None:intergenic | 45.0% |
! | AAGTGGATTTGCTTGGGCAT+TGG | + | chr7.3:88378166-88378185 | MS.gene79626:CDS | 45.0% |
! | ATATGCTGGAGCTGCCATTT+GGG | + | chr7.3:88377770-88377789 | MS.gene79626:CDS | 45.0% |
! | GGAAAGATAGGAGCATATGC+TGG | + | chr7.3:88377756-88377775 | MS.gene79626:CDS | 45.0% |
!! | ACCAGATGCAGATTTTGGAG+AGG | + | chr7.3:88378079-88378098 | MS.gene79626:CDS | 45.0% |
!! | TTGGCCCTTGATTTGGACAA+TGG | + | chr7.3:88377960-88377979 | MS.gene79626:CDS | 45.0% |
ATATTACAGGAAGCTGGGCC+TGG | + | chr7.3:88379231-88379250 | MS.gene79626:intron | 50.0% | |
CAGTTGAGACCCCAACTACA+AGG | - | chr7.3:88378728-88378747 | None:intergenic | 50.0% | |
CATATGCTGGAGCTGCCATT+TGG | + | chr7.3:88377769-88377788 | MS.gene79626:CDS | 50.0% | |
CTAGCTGGAGGTGGAACATT+TGG | + | chr7.3:88379258-88379277 | MS.gene79626:CDS | 50.0% | |
CTCGAACCGGTGACATCTTA+TGG | + | chr7.3:88377706-88377725 | MS.gene79626:CDS | 50.0% | |
GACATGGTAACAACTCCAGC+AGG | - | chr7.3:88376921-88376940 | None:intergenic | 50.0% | |
GCCTCTCCAAAATCTGCATC+TGG | - | chr7.3:88378083-88378102 | None:intergenic | 50.0% | |
GCGACAATGGAACCCTTCAA+TGG | + | chr7.3:88378192-88378211 | MS.gene79626:CDS | 50.0% | |
GCTGGAGTTGTTACCATGTC+TGG | + | chr7.3:88376921-88376940 | MS.gene79626:CDS | 50.0% | |
GCTTGTTTGGCTGACCCATT+TGG | + | chr7.3:88376887-88376906 | MS.gene79626:CDS | 50.0% | |
GGAAGGACTACTTCCCCAAA+TGG | - | chr7.3:88377787-88377806 | None:intergenic | 50.0% | |
GTGGCAATGGATGCTAGCAA+TGG | + | chr7.3:88379384-88379403 | MS.gene79626:CDS | 50.0% | |
! | GGAGAACTGGTGAGCTTGTT+TGG | + | chr7.3:88376874-88376893 | MS.gene79626:CDS | 50.0% |
! | TATGCTGGAGCTGCCATTTG+GGG | + | chr7.3:88377771-88377790 | MS.gene79626:CDS | 50.0% |
AGGGAGTCCCCGTACTTGAT+TGG | - | chr7.3:88377502-88377521 | None:intergenic | 55.0% | |
ATCTGGAGGATGGGTGGCAA+TGG | + | chr7.3:88379371-88379390 | MS.gene79626:CDS | 55.0% | |
CACAACATCTGGAGGATGGG+TGG | + | chr7.3:88379365-88379384 | MS.gene79626:CDS | 55.0% | |
CGGGGCAGAGTAGAGATTTC+CGG | - | chr7.3:88377844-88377863 | None:intergenic | 55.0% | |
GAGACCCCAACTACAAGGTG+TGG | - | chr7.3:88378723-88378742 | None:intergenic | 55.0% | |
GGCAGAGTAGAGATTTCCGG+TGG | - | chr7.3:88377841-88377860 | None:intergenic | 55.0% | |
GGCTAGAGCAACTCCAACTG+TGG | + | chr7.3:88376794-88376813 | MS.gene79626:CDS | 55.0% | |
GTCCCCGTACTTGATTGGTG+AGG | - | chr7.3:88377497-88377516 | None:intergenic | 55.0% | |
TGCTAGTGGCCCTGTTAGTG+TGG | + | chr7.3:88379449-88379468 | MS.gene79626:CDS | 55.0% | |
!! | TGGGCATTGGATCGCGACAA+TGG | + | chr7.3:88378179-88378198 | MS.gene79626:CDS | 55.0% |
TTACAGGAAGCTGGGCCTGG+TGG | + | chr7.3:88379234-88379253 | MS.gene79626:intron | 60.0% | |
CCACCTCCAGCTAGTCCACC+AGG | - | chr7.3:88379252-88379271 | None:intergenic | 65.0% | |
!! | CCTGGTGGACTAGCTGGAGG+TGG | + | chr7.3:88379249-88379268 | MS.gene79626:CDS | 65.0% |
!! | GCTGGGCCTGGTGGACTAGC+TGG | + | chr7.3:88379243-88379262 | MS.gene79626:CDS | 70.0% |
!! | GGGCCTGGTGGACTAGCTGG+AGG | + | chr7.3:88379246-88379265 | MS.gene79626:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 88376520 | 88379695 | 88376520 | ID=MS.gene79626 |
chr7.3 | mRNA | 88376520 | 88379695 | 88376520 | ID=MS.gene79626.t1;Parent=MS.gene79626 |
chr7.3 | exon | 88376520 | 88376544 | 88376520 | ID=MS.gene79626.t1.exon1;Parent=MS.gene79626.t1 |
chr7.3 | CDS | 88376520 | 88376544 | 88376520 | ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1 |
chr7.3 | exon | 88376793 | 88376958 | 88376793 | ID=MS.gene79626.t1.exon2;Parent=MS.gene79626.t1 |
chr7.3 | CDS | 88376793 | 88376958 | 88376793 | ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1 |
chr7.3 | exon | 88377617 | 88378220 | 88377617 | ID=MS.gene79626.t1.exon3;Parent=MS.gene79626.t1 |
chr7.3 | CDS | 88377617 | 88378220 | 88377617 | ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1 |
chr7.3 | exon | 88379240 | 88379695 | 88379240 | ID=MS.gene79626.t1.exon4;Parent=MS.gene79626.t1 |
chr7.3 | CDS | 88379240 | 88379695 | 88379240 | ID=cds.MS.gene79626.t1;Parent=MS.gene79626.t1 |
Gene Sequence |
Protein sequence |