Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79751.t1 | RHN39760.1 | 97.7 | 566 | 13 | 0 | 1 | 566 | 10 | 575 | 0.00E+00 | 1115.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79751.t1 | A0A314KSQ4 | 69.4 | 565 | 172 | 1 | 2 | 565 | 15 | 579 | 1.8e-240 | 833.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79751.t1 | A0A396GF40 | 97.7 | 566 | 13 | 0 | 1 | 566 | 10 | 575 | 0.0e+00 | 1115.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045936 | MS.gene79751 | PPI |
| MS.gene36841 | MS.gene79751 | PPI |
| MS.gene79751 | MS.gene053964 | PPI |
| MS.gene064168 | MS.gene79751 | PPI |
| MS.gene79751 | MS.gene073214 | PPI |
| MS.gene79751 | MS.gene99230 | PPI |
| MS.gene79751 | MS.gene34650 | PPI |
| MS.gene25516 | MS.gene79751 | PPI |
| MS.gene79751 | MS.gene78774 | PPI |
| MS.gene79751 | MS.gene95748 | PPI |
| MS.gene79751 | MS.gene046033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79751.t1 | MTR_8g027920 | 97.527 | 566 | 14 | 0 | 1 | 566 | 10 | 575 | 0.0 | 1149 |
| MS.gene79751.t1 | MTR_8g027965 | 87.809 | 566 | 69 | 0 | 1 | 566 | 10 | 575 | 0.0 | 1039 |
| MS.gene79751.t1 | MTR_8g027955 | 87.102 | 566 | 73 | 0 | 1 | 566 | 17 | 582 | 0.0 | 1034 |
| MS.gene79751.t1 | MTR_8g027970 | 82.509 | 566 | 99 | 0 | 1 | 566 | 10 | 575 | 0.0 | 999 |
| MS.gene79751.t1 | MTR_7g117110 | 74.737 | 570 | 140 | 1 | 1 | 566 | 10 | 579 | 0.0 | 916 |
| MS.gene79751.t1 | MTR_7g117110 | 72.167 | 406 | 105 | 2 | 1 | 402 | 10 | 411 | 0.0 | 624 |
| MS.gene79751.t1 | MTR_0102s0060 | 46.392 | 582 | 292 | 8 | 2 | 566 | 19 | 597 | 0.0 | 544 |
| MS.gene79751.t1 | MTR_5g016320 | 38.302 | 577 | 337 | 8 | 1 | 564 | 20 | 590 | 5.68e-142 | 424 |
| MS.gene79751.t1 | MTR_8g037720 | 61.994 | 321 | 96 | 2 | 250 | 566 | 137 | 435 | 2.36e-141 | 416 |
| MS.gene79751.t1 | MTR_8g037720 | 65.957 | 141 | 48 | 0 | 1 | 141 | 1 | 141 | 1.16e-54 | 191 |
| MS.gene79751.t1 | MTR_0035s0150 | 37.522 | 565 | 339 | 8 | 3 | 562 | 21 | 576 | 2.55e-133 | 401 |
| MS.gene79751.t1 | MTR_4g045903 | 35.702 | 577 | 347 | 8 | 2 | 563 | 30 | 597 | 1.04e-126 | 385 |
| MS.gene79751.t1 | MTR_8g467000 | 34.828 | 580 | 354 | 6 | 2 | 562 | 15 | 589 | 2.21e-126 | 384 |
| MS.gene79751.t1 | MTR_2g081860 | 35.163 | 583 | 351 | 6 | 2 | 562 | 14 | 591 | 8.36e-126 | 382 |
| MS.gene79751.t1 | MTR_1g047730 | 66.031 | 262 | 74 | 3 | 309 | 566 | 112 | 362 | 2.32e-121 | 362 |
| MS.gene79751.t1 | MTR_1g047730 | 43.671 | 158 | 44 | 3 | 1 | 157 | 1 | 114 | 9.07e-28 | 115 |
| MS.gene79751.t1 | MTR_1g088765 | 35.829 | 561 | 337 | 11 | 2 | 541 | 11 | 569 | 9.85e-115 | 353 |
| MS.gene79751.t1 | MTR_7g094190 | 32.522 | 575 | 353 | 14 | 2 | 552 | 5 | 568 | 1.35e-87 | 282 |
| MS.gene79751.t1 | MTR_1g088765 | 38.542 | 384 | 216 | 9 | 176 | 541 | 44 | 425 | 6.24e-85 | 271 |
| MS.gene79751.t1 | MTR_7g094190 | 31.590 | 478 | 295 | 13 | 96 | 552 | 2 | 468 | 1.17e-65 | 222 |
| MS.gene79751.t1 | MTR_7g094330 | 31.818 | 308 | 169 | 8 | 96 | 395 | 2 | 276 | 8.30e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79751.t1 | AT2G46370 | 65.493 | 568 | 191 | 4 | 1 | 565 | 21 | 586 | 0.0 | 795 |
| MS.gene79751.t1 | AT2G46370 | 65.493 | 568 | 191 | 4 | 1 | 565 | 10 | 575 | 0.0 | 794 |
| MS.gene79751.t1 | AT2G46370 | 65.493 | 568 | 191 | 4 | 1 | 565 | 10 | 575 | 0.0 | 794 |
| MS.gene79751.t1 | AT2G46370 | 66.667 | 498 | 163 | 2 | 69 | 565 | 1 | 496 | 0.0 | 723 |
| MS.gene79751.t1 | AT4G03400 | 47.863 | 585 | 283 | 7 | 2 | 566 | 9 | 591 | 0.0 | 559 |
| MS.gene79751.t1 | AT4G03400 | 47.863 | 585 | 283 | 7 | 2 | 566 | 9 | 591 | 0.0 | 559 |
| MS.gene79751.t1 | AT2G23170 | 39.474 | 570 | 332 | 7 | 3 | 564 | 21 | 585 | 6.07e-144 | 429 |
| MS.gene79751.t1 | AT4G37390 | 38.609 | 575 | 333 | 9 | 3 | 562 | 22 | 591 | 8.50e-139 | 416 |
| MS.gene79751.t1 | AT1G23160 | 37.544 | 570 | 333 | 9 | 8 | 563 | 18 | 578 | 2.01e-136 | 409 |
| MS.gene79751.t1 | AT1G59500 | 39.649 | 570 | 328 | 9 | 3 | 562 | 22 | 585 | 2.71e-136 | 409 |
| MS.gene79751.t1 | AT2G14960 | 38.070 | 570 | 334 | 9 | 3 | 564 | 21 | 579 | 3.63e-135 | 406 |
| MS.gene79751.t1 | AT4G27260 | 37.262 | 577 | 338 | 6 | 5 | 562 | 25 | 596 | 1.94e-134 | 405 |
| MS.gene79751.t1 | AT5G13320 | 37.739 | 575 | 331 | 10 | 6 | 562 | 9 | 574 | 6.78e-133 | 399 |
| MS.gene79751.t1 | AT5G13320 | 37.739 | 575 | 331 | 10 | 6 | 562 | 9 | 574 | 6.78e-133 | 399 |
| MS.gene79751.t1 | AT5G13320 | 37.739 | 575 | 331 | 10 | 6 | 562 | 24 | 589 | 1.46e-132 | 399 |
| MS.gene79751.t1 | AT1G48660 | 35.802 | 567 | 347 | 8 | 5 | 562 | 7 | 565 | 1.92e-128 | 388 |
| MS.gene79751.t1 | AT1G48660 | 35.789 | 570 | 346 | 9 | 5 | 562 | 7 | 568 | 3.67e-128 | 387 |
| MS.gene79751.t1 | AT5G54510 | 36.300 | 573 | 341 | 6 | 9 | 562 | 29 | 596 | 7.03e-128 | 388 |
| MS.gene79751.t1 | AT5G51470 | 37.478 | 571 | 339 | 8 | 2 | 562 | 9 | 571 | 2.82e-126 | 382 |
| MS.gene79751.t1 | AT5G13360 | 37.456 | 574 | 329 | 12 | 8 | 562 | 17 | 579 | 5.39e-120 | 367 |
| MS.gene79751.t1 | AT5G13360 | 37.456 | 574 | 329 | 12 | 8 | 562 | 17 | 579 | 5.39e-120 | 367 |
| MS.gene79751.t1 | AT5G13370 | 36.252 | 571 | 341 | 11 | 8 | 562 | 17 | 580 | 1.77e-119 | 365 |
| MS.gene79751.t1 | AT5G13360 | 37.456 | 574 | 329 | 12 | 8 | 562 | 95 | 657 | 3.57e-119 | 367 |
| MS.gene79751.t1 | AT5G13350 | 35.478 | 575 | 340 | 14 | 8 | 562 | 17 | 580 | 1.27e-118 | 363 |
| MS.gene79751.t1 | AT5G13350 | 35.478 | 575 | 340 | 14 | 8 | 562 | 17 | 580 | 1.27e-118 | 363 |
| MS.gene79751.t1 | AT2G47750 | 36.063 | 574 | 349 | 10 | 2 | 562 | 9 | 577 | 5.29e-116 | 356 |
| MS.gene79751.t1 | AT5G13380 | 35.777 | 573 | 340 | 13 | 8 | 562 | 47 | 609 | 5.64e-114 | 352 |
| MS.gene79751.t1 | AT1G28130 | 33.836 | 597 | 348 | 12 | 2 | 562 | 11 | 596 | 3.26e-110 | 342 |
| MS.gene79751.t1 | AT5G51470 | 36.853 | 483 | 289 | 6 | 89 | 562 | 6 | 481 | 3.85e-102 | 317 |
| MS.gene79751.t1 | AT1G48670 | 31.802 | 566 | 318 | 11 | 7 | 562 | 10 | 517 | 7.72e-99 | 310 |
| MS.gene79751.t1 | AT1G48670 | 35.294 | 408 | 250 | 6 | 163 | 562 | 5 | 406 | 3.75e-90 | 284 |
| MS.gene79751.t1 | AT1G28130 | 36.190 | 420 | 225 | 9 | 176 | 562 | 44 | 453 | 5.71e-85 | 272 |
| MS.gene79751.t1 | AT1G48690 | 34.197 | 193 | 112 | 4 | 5 | 191 | 7 | 190 | 8.04e-24 | 99.4 |
Find 112 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCACTGCTATCTCTTTA+AGG | 0.140515 | 8.4:+68199559 | MS.gene79751:CDS |
| AGCTTAAAGCCTTGCCATTT+TGG | 0.167787 | 8.4:-68200305 | None:intergenic |
| ACACATGCCTTGAAGCTTTC+AGG | 0.188228 | 8.4:-68199453 | None:intergenic |
| CCTTTGTTGACTTCTGAGTA+TGG | 0.254938 | 8.4:+68200858 | MS.gene79751:CDS |
| TCAGAACCTTTGAACAAGTT+TGG | 0.258443 | 8.4:+68200580 | MS.gene79751:CDS |
| ATTGGTTATTTACAAAGATT+TGG | 0.271404 | 8.4:+68199479 | MS.gene79751:CDS |
| CTTGAACATTATGTTGGTTT+AGG | 0.272496 | 8.4:+68202353 | MS.gene79751:CDS |
| TAGAGTGATTGGTGAAAATT+AGG | 0.278144 | 8.4:-68200474 | None:intergenic |
| CATAATGTTCAAGAATCTTC+TGG | 0.290500 | 8.4:-68202343 | None:intergenic |
| GCAAACTCAGGAGCCACTTT+AGG | 0.305629 | 8.4:-68200915 | None:intergenic |
| AGGGGATGTGGTAAGGGTTA+TGG | 0.307891 | 8.4:+68201968 | MS.gene79751:CDS |
| CAGAACCTTTGAACAAGTTT+GGG | 0.324841 | 8.4:+68200581 | MS.gene79751:CDS |
| CCGGACACTATGTTATCTTC+TGG | 0.330288 | 8.4:+68202174 | MS.gene79751:CDS |
| GAGAGGCTAACAAAGGATAC+TGG | 0.330786 | 8.4:+68199339 | MS.gene79751:CDS |
| CCTTGAACATACTTAACATT+AGG | 0.332140 | 8.4:-68200774 | None:intergenic |
| ATTCCTTTGTCACAACTTGA+TGG | 0.334642 | 8.4:+68200978 | MS.gene79751:CDS |
| GGGGATGTGGTAAGGGTTAT+GGG | 0.337169 | 8.4:+68201969 | MS.gene79751:CDS |
| TGGATCAAGTTAGCTAGTTC+AGG | 0.340099 | 8.4:-68200699 | None:intergenic |
| TCAACTATTCTATTGATATA+AGG | 0.342032 | 8.4:-68199504 | None:intergenic |
| GTTGTTAGCTGAAGAGAAAA+TGG | 0.368303 | 8.4:+68202109 | MS.gene79751:CDS |
| TTCATTGCATGCTTGTATCC+TGG | 0.373701 | 8.4:-68200405 | None:intergenic |
| AAGTTAGCTAGTTCAGGATT+TGG | 0.373912 | 8.4:-68200693 | None:intergenic |
| GCTGAATACTTGCAGAGTTT+AGG | 0.375997 | 8.4:+68199411 | MS.gene79751:CDS |
| CAAAGTGTTGCAAATATTGT+TGG | 0.386965 | 8.4:+68202427 | MS.gene79751:CDS |
| AACTGATCCTGAAAGCTTCA+AGG | 0.401122 | 8.4:+68199446 | MS.gene79751:CDS |
| AGAGAGTTTCCTATCCAAAA+TGG | 0.404103 | 8.4:+68200291 | MS.gene79751:intron |
| AATGCATAGGATTGAGCAAT+TGG | 0.406780 | 8.4:+68200727 | MS.gene79751:CDS |
| CCTAATGTTAAGTATGTTCA+AGG | 0.408097 | 8.4:+68200774 | MS.gene79751:CDS |
| GTGCAGGCTTATACAGATAT+AGG | 0.409763 | 8.4:+68201943 | MS.gene79751:intron |
| AGTATGGTTCTTCTGAAGGT+TGG | 0.412179 | 8.4:+68200874 | MS.gene79751:CDS |
| CTTAAAGAGATAGCAGTGAT+TGG | 0.415630 | 8.4:-68199558 | None:intergenic |
| TGGTGAATGTTGTACATGTT+TGG | 0.416776 | 8.4:+68202229 | MS.gene79751:CDS |
| TCCGAACAAGTCGGAGTTCA+AGG | 0.425031 | 8.4:-68202310 | None:intergenic |
| GCAAACTATCACAAGCTAAA+GGG | 0.436897 | 8.4:+68200340 | MS.gene79751:CDS |
| CCAGAAGATAACATAGTGTC+CGG | 0.447036 | 8.4:-68202174 | None:intergenic |
| CAACAATATTTGCAACACTT+TGG | 0.447856 | 8.4:-68202426 | None:intergenic |
| CGGACACTATGTTATCTTCT+GGG | 0.449862 | 8.4:+68202175 | MS.gene79751:CDS |
| GTCACAACTTGATGGAACTA+AGG | 0.454259 | 8.4:+68200986 | MS.gene79751:CDS |
| TCTGAGTATGGTTCTTCTGA+AGG | 0.455124 | 8.4:+68200870 | MS.gene79751:CDS |
| TATATCAATAGAATAGTTGA+TGG | 0.455629 | 8.4:+68199507 | MS.gene79751:CDS |
| ATGAAAGCACTTCAATCTCC+TGG | 0.455873 | 8.4:+68200423 | MS.gene79751:CDS |
| TGCAACACTTTGGTGTTTGT+AGG | 0.456160 | 8.4:-68202416 | None:intergenic |
| CAATGTTGATAGTAAGCATA+AGG | 0.460464 | 8.4:-68202037 | None:intergenic |
| AATTCAAAGTAAGCAATTTG+AGG | 0.463474 | 8.4:-68200954 | None:intergenic |
| TGCAGTTCTGGTACTAGTCA+AGG | 0.465207 | 8.4:+68199670 | MS.gene79751:intron |
| TTGCAGAGTTTAGGACTCAA+TGG | 0.466761 | 8.4:+68199420 | MS.gene79751:CDS |
| CAGATATAGGCTAGGGGATG+TGG | 0.467515 | 8.4:+68201956 | MS.gene79751:CDS |
| ATAGGCTAGGGGATGTGGTA+AGG | 0.468129 | 8.4:+68201961 | MS.gene79751:CDS |
| CTTCAAGGCATGTGTTCCAT+TGG | 0.474968 | 8.4:+68199461 | MS.gene79751:CDS |
| CCCTTGAACTCCGACTTGTT+CGG | 0.477568 | 8.4:+68202309 | MS.gene79751:CDS |
| GATGTTTCTCCTATTCTCAC+TGG | 0.483684 | 8.4:+68199531 | MS.gene79751:CDS |
| AGCAAACTATCACAAGCTAA+AGG | 0.491878 | 8.4:+68200339 | MS.gene79751:CDS |
| TTTACAATTATCAGTGGAAA+CGG | 0.492726 | 8.4:+68202079 | MS.gene79751:CDS |
| GCCAATGTATTCAGAAATCC+AGG | 0.494020 | 8.4:+68200387 | MS.gene79751:CDS |
| AGAGGTGGCAGTAGAGTGAT+TGG | 0.496209 | 8.4:-68200485 | None:intergenic |
| GGATACTGGGAATGTTCAAA+AGG | 0.497742 | 8.4:+68199353 | MS.gene79751:CDS |
| AAGATTCTTGAACATTATGT+TGG | 0.498920 | 8.4:+68202347 | MS.gene79751:CDS |
| CTCTACTGCCACCTCTTATG+TGG | 0.505432 | 8.4:+68200492 | MS.gene79751:CDS |
| TAGGCTAGGGGATGTGGTAA+GGG | 0.506564 | 8.4:+68201962 | MS.gene79751:CDS |
| TGCAAAGCAGTCCACATAAG+AGG | 0.507954 | 8.4:-68200503 | None:intergenic |
| GACATAGCAGTTCTAATGGA+TGG | 0.509602 | 8.4:-68200657 | None:intergenic |
| TTCTTCCCAAACTTGTTCAA+AGG | 0.512345 | 8.4:-68200586 | None:intergenic |
| ATAGTAATACCTGTTCCTAA+AGG | 0.512363 | 8.4:-68199764 | None:intergenic |
| TCAAACAATTCATCATTCCA+TGG | 0.514252 | 8.4:-68199709 | None:intergenic |
| GAAGATTGGTGAAGATTATG+AGG | 0.519278 | 8.4:+68201040 | MS.gene79751:CDS |
| ACATCATGAGGGCTGCATCC+AGG | 0.522874 | 8.4:-68200441 | None:intergenic |
| TCAATCCTATGCATTTCTTG+TGG | 0.525426 | 8.4:-68200719 | None:intergenic |
| ATCAAATGTGAATCCTAAAG+TGG | 0.526768 | 8.4:+68200902 | MS.gene79751:CDS |
| CTTATTACTGACATCAAAGA+AGG | 0.535229 | 8.4:+68200609 | MS.gene79751:CDS |
| ATTTCTGAATACATTGGCTG+TGG | 0.541655 | 8.4:-68200382 | None:intergenic |
| AGGGATCATGACTGGTGCAA+TGG | 0.543132 | 8.4:+68200794 | MS.gene79751:CDS |
| GCTTATACAGATATAGGCTA+GGG | 0.552915 | 8.4:+68201949 | MS.gene79751:CDS |
| CCGAACAAGTCGGAGTTCAA+GGG | 0.559483 | 8.4:-68202309 | None:intergenic |
| AAGGTAGAGCTTGAGCCAGT+GGG | 0.565600 | 8.4:+68201005 | MS.gene79751:CDS |
| TATGTTCAAGGGATCATGAC+TGG | 0.568493 | 8.4:+68200786 | MS.gene79751:CDS |
| AAATCTTTGTAAATAACCAA+TGG | 0.570068 | 8.4:-68199477 | None:intergenic |
| TTCACATCAGTTAACCCCAC+TGG | 0.574263 | 8.4:-68201020 | None:intergenic |
| GTTCCATCAAGTTGTGACAA+AGG | 0.575864 | 8.4:-68200981 | None:intergenic |
| GGCTTATACAGATATAGGCT+AGG | 0.576800 | 8.4:+68201948 | MS.gene79751:intron |
| TCCTGGATTTCTGAATACAT+TGG | 0.580005 | 8.4:-68200388 | None:intergenic |
| TAAGGTAGAGCTTGAGCCAG+TGG | 0.580352 | 8.4:+68201004 | MS.gene79751:CDS |
| TTTCTCTTCAGCTAACAACA+TGG | 0.580961 | 8.4:-68202105 | None:intergenic |
| CAAACTATCACAAGCTAAAG+GGG | 0.586566 | 8.4:+68200341 | MS.gene79751:CDS |
| CTAATGTTAAGTATGTTCAA+GGG | 0.588492 | 8.4:+68200775 | MS.gene79751:CDS |
| GGACTGAAAATCACATCATG+AGG | 0.590486 | 8.4:-68200453 | None:intergenic |
| TTGATCCACAAGAAATGCAT+AGG | 0.591375 | 8.4:+68200714 | MS.gene79751:CDS |
| AGAGGCTAACAAAGGATACT+GGG | 0.592286 | 8.4:+68199340 | MS.gene79751:CDS |
| GGGTTAACTGATGTGAAGAT+TGG | 0.597121 | 8.4:+68201026 | MS.gene79751:CDS |
| GAATGATTTACAATTATCAG+TGG | 0.599036 | 8.4:+68202073 | MS.gene79751:CDS |
| AAGTGATAGAAGAATTTGAG+AGG | 0.600729 | 8.4:+68199322 | MS.gene79751:CDS |
| ACAACATAAGTAGCAAACTC+AGG | 0.609304 | 8.4:-68200927 | None:intergenic |
| GTTAGTTCTAGAAAAGTCAA+AGG | 0.611504 | 8.4:+68202278 | MS.gene79751:CDS |
| CAGAAGATAACATAGTGTCC+GGG | 0.615461 | 8.4:-68202173 | None:intergenic |
| GTTTCCTATCCAAAATGGCA+AGG | 0.615891 | 8.4:+68200296 | MS.gene79751:CDS |
| TAGAAAAGTCAAAGGTATTG+CGG | 0.623191 | 8.4:+68202286 | MS.gene79751:CDS |
| GAACTCCGACTTGTTCGGAA+AGG | 0.630222 | 8.4:+68202314 | MS.gene79751:CDS |
| ATTGAGACACTATGCAGGAG+AGG | 0.630904 | 8.4:+68200833 | MS.gene79751:CDS |
| ATAGGATTGAGCAATTGGTA+TGG | 0.635926 | 8.4:+68200732 | MS.gene79751:CDS |
| AGAATTTGAGAGGCTAACAA+AGG | 0.640125 | 8.4:+68199332 | MS.gene79751:CDS |
| GTTATCTTCTGGGAAATCAG+TGG | 0.640384 | 8.4:+68202185 | MS.gene79751:CDS |
| ATGTTCCTTTCCGAACAAGT+CGG | 0.642426 | 8.4:-68202319 | None:intergenic |
| TGAGTCAGTTCAAGACACCT+AGG | 0.648473 | 8.4:+68202384 | MS.gene79751:CDS |
| TTTGTAGGAGCAACACACCT+AGG | 0.657654 | 8.4:-68202401 | None:intergenic |
| GAAGCAAGTGATGAAGTGCT+TGG | 0.664960 | 8.4:+68202209 | MS.gene79751:CDS |
| GACTGAAAATCACATCATGA+GGG | 0.670586 | 8.4:-68200452 | None:intergenic |
| CCATACTCAGAAGTCAACAA+AGG | 0.673745 | 8.4:-68200858 | None:intergenic |
| AAAGCAGTCCACATAAGAGG+TGG | 0.677682 | 8.4:-68200500 | None:intergenic |
| CTTATACAGATATAGGCTAG+GGG | 0.689485 | 8.4:+68201950 | MS.gene79751:CDS |
| ATTGATTTATCTAAAGAACC+CGG | 0.689692 | 8.4:+68202155 | MS.gene79751:CDS |
| AGGTAGAGCTTGAGCCAGTG+GGG | 0.703294 | 8.4:+68201006 | MS.gene79751:CDS |
| AAACTATCACAAGCTAAAGG+GGG | 0.711603 | 8.4:+68200342 | MS.gene79751:CDS |
| GGTTTGATATATCTGCACTG+TGG | 0.735598 | 8.4:-68199734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTAATTTATAAAATGAT+AGG | - | chr8.4:68201258-68201277 | None:intergenic | 10.0% |
| !!! | ACTTTTCATTTTTATTGTAT+GGG | + | chr8.4:68201701-68201720 | MS.gene79751:intron | 15.0% |
| !!! | CTTCTTTTTAAAAATATCAT+CGG | + | chr8.4:68200091-68200110 | MS.gene79751:intron | 15.0% |
| !!! | TACTTTTCATTTTTATTGTA+TGG | + | chr8.4:68201700-68201719 | MS.gene79751:intron | 15.0% |
| !!! | TTCATTTTGTAAATCATTAT+CGG | + | chr8.4:68199877-68199896 | MS.gene79751:intron | 15.0% |
| !! | AAACAAACTTTCAATATGAA+GGG | + | chr8.4:68200207-68200226 | MS.gene79751:intron | 20.0% |
| !! | AAATCTTTGTAAATAACCAA+TGG | - | chr8.4:68199480-68199499 | None:intergenic | 20.0% |
| !! | ATTGGTTATTTACAAAGATT+TGG | + | chr8.4:68199479-68199498 | MS.gene79751:CDS | 20.0% |
| !! | TATAAATTAGTTAATGTGTC+AGG | + | chr8.4:68201265-68201284 | MS.gene79751:intron | 20.0% |
| !! | TATATCAATAGAATAGTTGA+TGG | + | chr8.4:68199507-68199526 | MS.gene79751:CDS | 20.0% |
| !! | TCAACTATTCTATTGATATA+AGG | - | chr8.4:68199507-68199526 | None:intergenic | 20.0% |
| !! | TCTTAAGAAGAGAAAAAAAA+AGG | - | chr8.4:68201109-68201128 | None:intergenic | 20.0% |
| !!! | CTCTAAAGTATAAAAAAAAC+CGG | - | chr8.4:68201231-68201250 | None:intergenic | 20.0% |
| !!! | TATTAGTCCCTAAATATTTT+AGG | - | chr8.4:68201205-68201224 | None:intergenic | 20.0% |
| !!! | TCACTAGGATTTTTTTTAAA+AGG | - | chr8.4:68201859-68201878 | None:intergenic | 20.0% |
| !!! | TTATGTTTTGTTTTTGTCTA+GGG | + | chr8.4:68201375-68201394 | MS.gene79751:intron | 20.0% |
| !!! | TTTATGTTTTGTTTTTGTCT+AGG | + | chr8.4:68201374-68201393 | MS.gene79751:intron | 20.0% |
| ! | AAGATTCTTGAACATTATGT+TGG | + | chr8.4:68202347-68202366 | MS.gene79751:CDS | 25.0% |
| ! | AATTCAAAGTAAGCAATTTG+AGG | - | chr8.4:68200957-68200976 | None:intergenic | 25.0% |
| ! | AGAGACTACCTAAAATATTT+AGG | + | chr8.4:68201194-68201213 | MS.gene79751:intron | 25.0% |
| ! | CAAACAAACTTTCAATATGA+AGG | + | chr8.4:68200206-68200225 | MS.gene79751:intron | 25.0% |
| ! | CTAATGTTAAGTATGTTCAA+GGG | + | chr8.4:68200775-68200794 | MS.gene79751:CDS | 25.0% |
| ! | GAAAGCAAAAATATATACCA+TGG | + | chr8.4:68199692-68199711 | MS.gene79751:CDS | 25.0% |
| ! | GAATGATTTACAATTATCAG+TGG | + | chr8.4:68202073-68202092 | MS.gene79751:CDS | 25.0% |
| ! | GAGACTACCTAAAATATTTA+GGG | + | chr8.4:68201195-68201214 | MS.gene79751:intron | 25.0% |
| ! | GGATACAAATTACCTAAATT+TGG | - | chr8.4:68201792-68201811 | None:intergenic | 25.0% |
| ! | GGTACATATTTAATGTGATT+AGG | - | chr8.4:68201838-68201857 | None:intergenic | 25.0% |
| ! | TACATAACAAATGTTACACA+AGG | + | chr8.4:68201659-68201678 | MS.gene79751:intron | 25.0% |
| ! | TAGACTCTTAGACTTAATAA+AGG | - | chr8.4:68201892-68201911 | None:intergenic | 25.0% |
| ! | TTTACAATTATCAGTGGAAA+CGG | + | chr8.4:68202079-68202098 | MS.gene79751:CDS | 25.0% |
| ! | TTTCTCTTCTTAAGATGTTA+GGG | + | chr8.4:68201114-68201133 | MS.gene79751:intron | 25.0% |
| !! | AATAATGGAGGAATTGATTA+GGG | + | chr8.4:68201598-68201617 | MS.gene79751:intron | 25.0% |
| !! | ATATACTAGTAGTGTGTTTT+TGG | + | chr8.4:68201502-68201521 | MS.gene79751:intron | 25.0% |
| !! | ATTGATTTATCTAAAGAACC+CGG | + | chr8.4:68202155-68202174 | MS.gene79751:CDS | 25.0% |
| !! | CTTCATATTGAAAGTTTGTT+TGG | - | chr8.4:68200208-68200227 | None:intergenic | 25.0% |
| !! | GTGAAAAAGTTAGAAGTTTT+TGG | + | chr8.4:68199624-68199643 | MS.gene79751:intron | 25.0% |
| !! | TTTTCTCTTCTTAAGATGTT+AGG | + | chr8.4:68201113-68201132 | MS.gene79751:intron | 25.0% |
| !!! | ATAAATATTTTAGTACCTGC+AGG | - | chr8.4:68201080-68201099 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCACATTCAACT+GGG | - | chr8.4:68199616-68199635 | None:intergenic | 25.0% |
| !!! | TCATTTTTATTGTATGGGAT+GGG | + | chr8.4:68201706-68201725 | MS.gene79751:intron | 25.0% |
| !!! | TGTCTCAATTTTTTCACATA+AGG | - | chr8.4:68200822-68200841 | None:intergenic | 25.0% |
| !!! | TTATTGATTTTTGCTGCATA+CGG | + | chr8.4:68199918-68199937 | MS.gene79751:intron | 25.0% |
| !!! | TTCATTTTTATTGTATGGGA+TGG | + | chr8.4:68201705-68201724 | MS.gene79751:intron | 25.0% |
| AAAAAATTGAGACACTATGC+AGG | + | chr8.4:68200828-68200847 | MS.gene79751:CDS | 30.0% | |
| AAACTTTCAATATGAAGGGT+CGG | + | chr8.4:68200211-68200230 | MS.gene79751:intron | 30.0% | |
| AAAGGTGAGAAAATTTCACT+AGG | - | chr8.4:68201874-68201893 | None:intergenic | 30.0% | |
| AAGAATATAATCAACTGTGC+TGG | - | chr8.4:68201354-68201373 | None:intergenic | 30.0% | |
| AAGTGATAGAAGAATTTGAG+AGG | + | chr8.4:68199322-68199341 | MS.gene79751:CDS | 30.0% | |
| ATAGTAATACCTGTTCCTAA+AGG | - | chr8.4:68199767-68199786 | None:intergenic | 30.0% | |
| ATCAAATGTGAATCCTAAAG+TGG | + | chr8.4:68200902-68200921 | MS.gene79751:CDS | 30.0% | |
| ATGTACTATGTTCCTTATGT+AGG | - | chr8.4:68201814-68201833 | None:intergenic | 30.0% | |
| ATGTTAGGGACTAATATGAT+GGG | + | chr8.4:68201128-68201147 | MS.gene79751:intron | 30.0% | |
| ATTAATCTTGGATAATGTGC+AGG | + | chr8.4:68201927-68201946 | MS.gene79751:intron | 30.0% | |
| ATTAGTATGTTGTAAGTGAG+TGG | + | chr8.4:68201573-68201592 | MS.gene79751:intron | 30.0% | |
| CAAAAATCAAGTTTCTTCGT+AGG | + | chr8.4:68202009-68202028 | MS.gene79751:CDS | 30.0% | |
| CAACAATATTTGCAACACTT+TGG | - | chr8.4:68202429-68202448 | None:intergenic | 30.0% | |
| CATAATGTTCAAGAATCTTC+TGG | - | chr8.4:68202346-68202365 | None:intergenic | 30.0% | |
| CCTAATGTTAAGTATGTTCA+AGG | + | chr8.4:68200774-68200793 | MS.gene79751:CDS | 30.0% | |
| CCTTGAACATACTTAACATT+AGG | - | chr8.4:68200777-68200796 | None:intergenic | 30.0% | |
| CTACTTTGTTCTGTTACAAT+GGG | + | chr8.4:68201317-68201336 | MS.gene79751:intron | 30.0% | |
| CTTATTACTGACATCAAAGA+AGG | + | chr8.4:68200609-68200628 | MS.gene79751:CDS | 30.0% | |
| GTCTAAGAGTCTAATTATGT+TGG | + | chr8.4:68201899-68201918 | MS.gene79751:intron | 30.0% | |
| TAGAGTGATTGGTGAAAATT+AGG | - | chr8.4:68200477-68200496 | None:intergenic | 30.0% | |
| TATTTAGGGACTAATATGAC+CGG | + | chr8.4:68201209-68201228 | MS.gene79751:intron | 30.0% | |
| TCAAACAATTCATCATTCCA+TGG | - | chr8.4:68199712-68199731 | None:intergenic | 30.0% | |
| TGTACTATGTTCCTTATGTA+GGG | - | chr8.4:68201813-68201832 | None:intergenic | 30.0% | |
| TTAACATTAGGAAAAAGCTC+TGG | - | chr8.4:68200765-68200784 | None:intergenic | 30.0% | |
| ! | AGAGTGGTTATTGTGAATTT+TGG | + | chr8.4:68201406-68201425 | MS.gene79751:intron | 30.0% |
| ! | ATCAAACCTCTTTTTCCTTT+AGG | + | chr8.4:68199749-68199768 | MS.gene79751:CDS | 30.0% |
| ! | CAATAATGGAGGAATTGATT+AGG | + | chr8.4:68201597-68201616 | MS.gene79751:intron | 30.0% |
| ! | CTACGAAGAAACTTGATTTT+TGG | - | chr8.4:68202011-68202030 | None:intergenic | 30.0% |
| ! | GATAAAGCTTTTAGCACAAA+TGG | + | chr8.4:68201633-68201652 | MS.gene79751:intron | 30.0% |
| ! | GGAAACACTGAAAAAGATTT+TGG | + | chr8.4:68199374-68199393 | MS.gene79751:CDS | 30.0% |
| ! | GTAATTTGTATCCCTACATA+AGG | + | chr8.4:68201799-68201818 | MS.gene79751:intron | 30.0% |
| !! | ATGTTGGTGACAATTAATCT+TGG | + | chr8.4:68201915-68201934 | MS.gene79751:intron | 30.0% |
| !! | ATTTTGTGTTTTTGCAGTTC+TGG | + | chr8.4:68199658-68199677 | MS.gene79751:intron | 30.0% |
| !! | CAAAGTGTTGCAAATATTGT+TGG | + | chr8.4:68202427-68202446 | MS.gene79751:CDS | 30.0% |
| !! | CAATGTTGATAGTAAGCATA+AGG | - | chr8.4:68202040-68202059 | None:intergenic | 30.0% |
| !! | CTTGAACATTATGTTGGTTT+AGG | + | chr8.4:68202353-68202372 | MS.gene79751:CDS | 30.0% |
| !! | GTTAGTTCTAGAAAAGTCAA+AGG | + | chr8.4:68202278-68202297 | MS.gene79751:CDS | 30.0% |
| !! | TAGAAAAGTCAAAGGTATTG+CGG | + | chr8.4:68202286-68202305 | MS.gene79751:CDS | 30.0% |
| !! | TTTTGACATAGCAGTTCTAA+TGG | - | chr8.4:68200664-68200683 | None:intergenic | 30.0% |
| !!! | ATGATGGGTTTTCATACTTT+AGG | + | chr8.4:68201143-68201162 | MS.gene79751:intron | 30.0% |
| !!! | CTAACTTTTTCACATTCAAC+TGG | - | chr8.4:68199617-68199636 | None:intergenic | 30.0% |
| !!! | GTGTTTTTGGAAAGATTGAA+TGG | + | chr8.4:68201515-68201534 | MS.gene79751:intron | 30.0% |
| !!! | TGATTTTTGGAGTTGAGTTA+TGG | - | chr8.4:68201998-68202017 | None:intergenic | 30.0% |
| AAACTATCACAAGCTAAAGG+GGG | + | chr8.4:68200342-68200361 | MS.gene79751:CDS | 35.0% | |
| AAGTTAGCTAGTTCAGGATT+TGG | - | chr8.4:68200696-68200715 | None:intergenic | 35.0% | |
| AATGCATAGGATTGAGCAAT+TGG | + | chr8.4:68200727-68200746 | MS.gene79751:CDS | 35.0% | |
| ACAACATAAGTAGCAAACTC+AGG | - | chr8.4:68200930-68200949 | None:intergenic | 35.0% | |
| ACCTAAATTTGGTCCCATAA+AGG | - | chr8.4:68201781-68201800 | None:intergenic | 35.0% | |
| ACCTTTATGGGACCAAATTT+AGG | + | chr8.4:68201777-68201796 | MS.gene79751:intron | 35.0% | |
| AGAATTTGAGAGGCTAACAA+AGG | + | chr8.4:68199332-68199351 | MS.gene79751:CDS | 35.0% | |
| AGAGAGTTTCCTATCCAAAA+TGG | + | chr8.4:68200291-68200310 | MS.gene79751:intron | 35.0% | |
| AGCAAACTATCACAAGCTAA+AGG | + | chr8.4:68200339-68200358 | MS.gene79751:CDS | 35.0% | |
| ATAGGAAACTCTCTGCATAA+TGG | - | chr8.4:68200285-68200304 | None:intergenic | 35.0% | |
| ATAGGATTGAGCAATTGGTA+TGG | + | chr8.4:68200732-68200751 | MS.gene79751:CDS | 35.0% | |
| ATTCCTTTGTCACAACTTGA+TGG | + | chr8.4:68200978-68200997 | MS.gene79751:CDS | 35.0% | |
| CAAACTATCACAAGCTAAAG+GGG | + | chr8.4:68200341-68200360 | MS.gene79751:CDS | 35.0% | |
| CAATCACTGCTATCTCTTTA+AGG | + | chr8.4:68199559-68199578 | MS.gene79751:CDS | 35.0% | |
| CAGAACCTTTGAACAAGTTT+GGG | + | chr8.4:68200581-68200600 | MS.gene79751:CDS | 35.0% | |
| CTTAAAGAGATAGCAGTGAT+TGG | - | chr8.4:68199561-68199580 | None:intergenic | 35.0% | |
| CTTATACAGATATAGGCTAG+GGG | + | chr8.4:68201950-68201969 | MS.gene79751:CDS | 35.0% | |
| GAAGATTGGTGAAGATTATG+AGG | + | chr8.4:68201040-68201059 | MS.gene79751:CDS | 35.0% | |
| GACTGAAAATCACATCATGA+GGG | - | chr8.4:68200455-68200474 | None:intergenic | 35.0% | |
| GATGTTAGGGACTAATATGA+TGG | + | chr8.4:68201127-68201146 | MS.gene79751:intron | 35.0% | |
| GCAAACTATCACAAGCTAAA+GGG | + | chr8.4:68200340-68200359 | MS.gene79751:CDS | 35.0% | |
| GCTTATACAGATATAGGCTA+GGG | + | chr8.4:68201949-68201968 | MS.gene79751:CDS | 35.0% | |
| GTTGTTAGCTGAAGAGAAAA+TGG | + | chr8.4:68202109-68202128 | MS.gene79751:CDS | 35.0% | |
| GTTGTTGATATGTCAGTGTT+AGG | - | chr8.4:68199953-68199972 | None:intergenic | 35.0% | |
| TCAATCCTATGCATTTCTTG+TGG | - | chr8.4:68200722-68200741 | None:intergenic | 35.0% | |
| TCAGAACCTTTGAACAAGTT+TGG | + | chr8.4:68200580-68200599 | MS.gene79751:CDS | 35.0% | |
| TCCTGGATTTCTGAATACAT+TGG | - | chr8.4:68200391-68200410 | None:intergenic | 35.0% | |
| TGGAAAGATTGAATGGTTAC+TGG | + | chr8.4:68201522-68201541 | MS.gene79751:intron | 35.0% | |
| TGGTGAATGTTGTACATGTT+TGG | + | chr8.4:68202229-68202248 | MS.gene79751:CDS | 35.0% | |
| TGTAAGTGAGTGGACAATAA+TGG | + | chr8.4:68201583-68201602 | MS.gene79751:intron | 35.0% | |
| TGTTGAACATTGACACATGT+TGG | - | chr8.4:68199829-68199848 | None:intergenic | 35.0% | |
| TTATTGTATGGGATGGGATT+GGG | + | chr8.4:68201712-68201731 | MS.gene79751:intron | 35.0% | |
| TTGATCCACAAGAAATGCAT+AGG | + | chr8.4:68200714-68200733 | MS.gene79751:CDS | 35.0% | |
| TTTATTGTATGGGATGGGAT+TGG | + | chr8.4:68201711-68201730 | MS.gene79751:intron | 35.0% | |
| TTTCTCTTCAGCTAACAACA+TGG | - | chr8.4:68202108-68202127 | None:intergenic | 35.0% | |
| ! | ATTTCTGAATACATTGGCTG+TGG | - | chr8.4:68200385-68200404 | None:intergenic | 35.0% |
| ! | GCTACTTTGTTCTGTTACAA+TGG | + | chr8.4:68201316-68201335 | MS.gene79751:intron | 35.0% |
| ! | TTCTTCCCAAACTTGTTCAA+AGG | - | chr8.4:68200589-68200608 | None:intergenic | 35.0% |
| !! | GTTACTTTGCCTTTTATGCT+TGG | + | chr8.4:68201747-68201766 | MS.gene79751:intron | 35.0% |
| !!! | ATTGGTTTTCCAGTGAGAAT+AGG | - | chr8.4:68199543-68199562 | None:intergenic | 35.0% |
| !!! | TATTTTAGTACCTGCAGGAT+TGG | - | chr8.4:68201075-68201094 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGTCTAGGGTGTA+AGG | + | chr8.4:68201382-68201401 | MS.gene79751:intron | 35.0% |
| AACTGATCCTGAAAGCTTCA+AGG | + | chr8.4:68199446-68199465 | MS.gene79751:CDS | 40.0% | |
| AAGTGAGTGGACAATAATGG+AGG | + | chr8.4:68201586-68201605 | MS.gene79751:intron | 40.0% | |
| AGAGGCTAACAAAGGATACT+GGG | + | chr8.4:68199340-68199359 | MS.gene79751:CDS | 40.0% | |
| ATGTTCCTTTCCGAACAAGT+CGG | - | chr8.4:68202322-68202341 | None:intergenic | 40.0% | |
| CAGAAGATAACATAGTGTCC+GGG | - | chr8.4:68202176-68202195 | None:intergenic | 40.0% | |
| CCAGAAGATAACATAGTGTC+CGG | - | chr8.4:68202177-68202196 | None:intergenic | 40.0% | |
| CCATACTCAGAAGTCAACAA+AGG | - | chr8.4:68200861-68200880 | None:intergenic | 40.0% | |
| CCTGTTCCTAAAGGAAAAAG+AGG | - | chr8.4:68199758-68199777 | None:intergenic | 40.0% | |
| CGGACACTATGTTATCTTCT+GGG | + | chr8.4:68202175-68202194 | MS.gene79751:CDS | 40.0% | |
| GATGTTTCTCCTATTCTCAC+TGG | + | chr8.4:68199531-68199550 | MS.gene79751:CDS | 40.0% | |
| GCCAATGTATTCAGAAATCC+AGG | + | chr8.4:68200387-68200406 | MS.gene79751:CDS | 40.0% | |
| GCTGAATACTTGCAGAGTTT+AGG | + | chr8.4:68199411-68199430 | MS.gene79751:CDS | 40.0% | |
| GGACTGAAAATCACATCATG+AGG | - | chr8.4:68200456-68200475 | None:intergenic | 40.0% | |
| GGATACTGGGAATGTTCAAA+AGG | + | chr8.4:68199353-68199372 | MS.gene79751:CDS | 40.0% | |
| GGCTTATACAGATATAGGCT+AGG | + | chr8.4:68201948-68201967 | MS.gene79751:intron | 40.0% | |
| GGGTTAACTGATGTGAAGAT+TGG | + | chr8.4:68201026-68201045 | MS.gene79751:CDS | 40.0% | |
| GGTTTGATATATCTGCACTG+TGG | - | chr8.4:68199737-68199756 | None:intergenic | 40.0% | |
| GTAACAGAACAAAGTAGCAG+TGG | - | chr8.4:68201314-68201333 | None:intergenic | 40.0% | |
| GTCACAACTTGATGGAACTA+AGG | + | chr8.4:68200986-68201005 | MS.gene79751:CDS | 40.0% | |
| GTCATGTCACCAAGCATAAA+AGG | - | chr8.4:68201759-68201778 | None:intergenic | 40.0% | |
| GTGCAGGCTTATACAGATAT+AGG | + | chr8.4:68201943-68201962 | MS.gene79751:intron | 40.0% | |
| GTTTCCTATCCAAAATGGCA+AGG | + | chr8.4:68200296-68200315 | MS.gene79751:CDS | 40.0% | |
| TATGTTCAAGGGATCATGAC+TGG | + | chr8.4:68200786-68200805 | MS.gene79751:CDS | 40.0% | |
| TCTGAGTATGGTTCTTCTGA+AGG | + | chr8.4:68200870-68200889 | MS.gene79751:CDS | 40.0% | |
| TGGATCAAGTTAGCTAGTTC+AGG | - | chr8.4:68200702-68200721 | None:intergenic | 40.0% | |
| TTCATTGCATGCTTGTATCC+TGG | - | chr8.4:68200408-68200427 | None:intergenic | 40.0% | |
| ! | AGTATGGTTCTTCTGAAGGT+TGG | + | chr8.4:68200874-68200893 | MS.gene79751:CDS | 40.0% |
| ! | CTTGGTGACATGACCTTTAT+GGG | + | chr8.4:68201765-68201784 | MS.gene79751:intron | 40.0% |
| ! | GACAAGTCTTTTGTTGATGC+TGG | + | chr8.4:68202251-68202270 | MS.gene79751:CDS | 40.0% |
| ! | GACATAGCAGTTCTAATGGA+TGG | - | chr8.4:68200660-68200679 | None:intergenic | 40.0% |
| ! | GTTATCTTCTGGGAAATCAG+TGG | + | chr8.4:68202185-68202204 | MS.gene79751:CDS | 40.0% |
| ! | GTTCCATCAAGTTGTGACAA+AGG | - | chr8.4:68200984-68201003 | None:intergenic | 40.0% |
| ! | TTGCAGAGTTTAGGACTCAA+TGG | + | chr8.4:68199420-68199439 | MS.gene79751:CDS | 40.0% |
| !! | AGCTTAAAGCCTTGCCATTT+TGG | - | chr8.4:68200308-68200327 | None:intergenic | 40.0% |
| !! | ATGAAAGCACTTCAATCTCC+TGG | + | chr8.4:68200423-68200442 | MS.gene79751:CDS | 40.0% |
| !! | CCTCTTTTTCCTTTAGGAAC+AGG | + | chr8.4:68199755-68199774 | MS.gene79751:CDS | 40.0% |
| !! | CCTTTGTTGACTTCTGAGTA+TGG | + | chr8.4:68200858-68200877 | MS.gene79751:CDS | 40.0% |
| !! | TGCAACACTTTGGTGTTTGT+AGG | - | chr8.4:68202419-68202438 | None:intergenic | 40.0% |
| !!! | AAAGCCTTGCCATTTTGGAT+AGG | - | chr8.4:68200303-68200322 | None:intergenic | 40.0% |
| AAAGCAGTCCACATAAGAGG+TGG | - | chr8.4:68200503-68200522 | None:intergenic | 45.0% | |
| AACAAAGTAGCAGTGGTTGG+TGG | - | chr8.4:68201307-68201326 | None:intergenic | 45.0% | |
| ACACATGCCTTGAAGCTTTC+AGG | - | chr8.4:68199456-68199475 | None:intergenic | 45.0% | |
| ACACCAAAGCATGTCGTTGT+CGG | + | chr8.4:68200179-68200198 | MS.gene79751:intron | 45.0% | |
| ATTGAGACACTATGCAGGAG+AGG | + | chr8.4:68200833-68200852 | MS.gene79751:CDS | 45.0% | |
| CAAATGTTACCACATGTGCC+AGG | - | chr8.4:68200063-68200082 | None:intergenic | 45.0% | |
| CAGAACAAAGTAGCAGTGGT+TGG | - | chr8.4:68201310-68201329 | None:intergenic | 45.0% | |
| CCGGACACTATGTTATCTTC+TGG | + | chr8.4:68202174-68202193 | MS.gene79751:CDS | 45.0% | |
| CTAACATGTGTTGGAGTTCG+AGG | - | chr8.4:68200037-68200056 | None:intergenic | 45.0% | |
| CTTCAAGGCATGTGTTCCAT+TGG | + | chr8.4:68199461-68199480 | MS.gene79751:CDS | 45.0% | |
| GAGAGGCTAACAAAGGATAC+TGG | + | chr8.4:68199339-68199358 | MS.gene79751:CDS | 45.0% | |
| TCCAACACATGTTAGACACC+TGG | + | chr8.4:68200042-68200061 | MS.gene79751:intron | 45.0% | |
| TCGAACATAACCACATGTGC+CGG | + | chr8.4:68200000-68200019 | MS.gene79751:intron | 45.0% | |
| TGAGTCAGTTCAAGACACCT+AGG | + | chr8.4:68202384-68202403 | MS.gene79751:CDS | 45.0% | |
| TGCAAAGCAGTCCACATAAG+AGG | - | chr8.4:68200506-68200525 | None:intergenic | 45.0% | |
| TTCACATCAGTTAACCCCAC+TGG | - | chr8.4:68201023-68201042 | None:intergenic | 45.0% | |
| TTTGTAGGAGCAACACACCT+AGG | - | chr8.4:68202404-68202423 | None:intergenic | 45.0% | |
| ! | GAAGCAAGTGATGAAGTGCT+TGG | + | chr8.4:68202209-68202228 | MS.gene79751:CDS | 45.0% |
| ! | GCTTGGTGACATGACCTTTA+TGG | + | chr8.4:68201764-68201783 | MS.gene79751:intron | 45.0% |
| ! | TGCAGTTCTGGTACTAGTCA+AGG | + | chr8.4:68199670-68199689 | MS.gene79751:intron | 45.0% |
| ! | TTTTGCTGCATACGGAGCAT+TGG | + | chr8.4:68199926-68199945 | MS.gene79751:intron | 45.0% |
| !! | GTTGTTTTCACCAATCCTGC+AGG | + | chr8.4:68201062-68201081 | MS.gene79751:CDS | 45.0% |
| AAGGTAGAGCTTGAGCCAGT+GGG | + | chr8.4:68201005-68201024 | MS.gene79751:CDS | 50.0% | |
| AGAGGTGGCAGTAGAGTGAT+TGG | - | chr8.4:68200488-68200507 | None:intergenic | 50.0% | |
| AGGGATCATGACTGGTGCAA+TGG | + | chr8.4:68200794-68200813 | MS.gene79751:CDS | 50.0% | |
| AGGGGATGTGGTAAGGGTTA+TGG | + | chr8.4:68201968-68201987 | MS.gene79751:CDS | 50.0% | |
| ATAGGCTAGGGGATGTGGTA+AGG | + | chr8.4:68201961-68201980 | MS.gene79751:CDS | 50.0% | |
| CAGATATAGGCTAGGGGATG+TGG | + | chr8.4:68201956-68201975 | MS.gene79751:CDS | 50.0% | |
| CCGAACAAGTCGGAGTTCAA+GGG | - | chr8.4:68202312-68202331 | None:intergenic | 50.0% | |
| CTCTACTGCCACCTCTTATG+TGG | + | chr8.4:68200492-68200511 | MS.gene79751:CDS | 50.0% | |
| GCCAGGTGTCTAACATGTGT+TGG | - | chr8.4:68200046-68200065 | None:intergenic | 50.0% | |
| GGGGATGTGGTAAGGGTTAT+GGG | + | chr8.4:68201969-68201988 | MS.gene79751:CDS | 50.0% | |
| TAAGGTAGAGCTTGAGCCAG+TGG | + | chr8.4:68201004-68201023 | MS.gene79751:CDS | 50.0% | |
| TAGGCTAGGGGATGTGGTAA+GGG | + | chr8.4:68201962-68201981 | MS.gene79751:CDS | 50.0% | |
| TCCGAACAAGTCGGAGTTCA+AGG | - | chr8.4:68202313-68202332 | None:intergenic | 50.0% | |
| TGGGATTGGGAGAGAAGAAG+TGG | + | chr8.4:68201725-68201744 | MS.gene79751:intron | 50.0% | |
| TGTCCGACAACGACATGCTT+TGG | - | chr8.4:68200185-68200204 | None:intergenic | 50.0% | |
| TGTTAGACACCTGGCACATG+TGG | + | chr8.4:68200051-68200070 | MS.gene79751:intron | 50.0% | |
| ! | CCCTTGAACTCCGACTTGTT+CGG | + | chr8.4:68202309-68202328 | MS.gene79751:CDS | 50.0% |
| ! | GAACTCCGACTTGTTCGGAA+AGG | + | chr8.4:68202314-68202333 | MS.gene79751:CDS | 50.0% |
| ! | GCAAACTCAGGAGCCACTTT+AGG | - | chr8.4:68200918-68200937 | None:intergenic | 50.0% |
| ! | GTCTAGGGTGTAAGGTAGAG+TGG | + | chr8.4:68201390-68201409 | MS.gene79751:intron | 50.0% |
| ACATCATGAGGGCTGCATCC+AGG | - | chr8.4:68200444-68200463 | None:intergenic | 55.0% | |
| AGGTAGAGCTTGAGCCAGTG+GGG | + | chr8.4:68201006-68201025 | MS.gene79751:CDS | 55.0% | |
| GTTCGAGGTCTGCATGACAC+CGG | - | chr8.4:68200022-68200041 | None:intergenic | 55.0% | |
| CTGCATGACACCGGCACATG+TGG | - | chr8.4:68200013-68200032 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68199315 | 68202490 | 68199315 | ID=MS.gene79751 |
| chr8.4 | mRNA | 68199315 | 68202490 | 68199315 | ID=MS.gene79751.t1;Parent=MS.gene79751 |
| chr8.4 | exon | 68199315 | 68199580 | 68199315 | ID=MS.gene79751.t1.exon1;Parent=MS.gene79751.t1 |
| chr8.4 | CDS | 68199315 | 68199580 | 68199315 | ID=cds.MS.gene79751.t1;Parent=MS.gene79751.t1 |
| chr8.4 | exon | 68199675 | 68199776 | 68199675 | ID=MS.gene79751.t1.exon2;Parent=MS.gene79751.t1 |
| chr8.4 | CDS | 68199675 | 68199776 | 68199675 | ID=cds.MS.gene79751.t1;Parent=MS.gene79751.t1 |
| chr8.4 | exon | 68200293 | 68201083 | 68200293 | ID=MS.gene79751.t1.exon3;Parent=MS.gene79751.t1 |
| chr8.4 | CDS | 68200293 | 68201083 | 68200293 | ID=cds.MS.gene79751.t1;Parent=MS.gene79751.t1 |
| chr8.4 | exon | 68201949 | 68202490 | 68201949 | ID=MS.gene79751.t1.exon4;Parent=MS.gene79751.t1 |
| chr8.4 | CDS | 68201949 | 68202490 | 68201949 | ID=cds.MS.gene79751.t1;Parent=MS.gene79751.t1 |
| Gene Sequence |
| Protein sequence |
