Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064168.t1 | XP_013442717.1 | 97.7 | 575 | 7 | 2 | 1 | 573 | 1 | 571 | 0.00E+00 | 1151.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064168.t1 | Q9ZNS2 | 68.0 | 559 | 171 | 4 | 22 | 573 | 8 | 565 | 2.1e-228 | 793.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064168.t1 | A0A072TH59 | 97.7 | 575 | 7 | 2 | 1 | 573 | 1 | 571 | 0.0e+00 | 1151.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene064168 | 0.820714 | 5.93E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene064168 | 0.820185 | 7.84E-53 | -1.69E-46 |
| MS.gene049356 | MS.gene064168 | 0.826342 | 2.86E-54 | -1.69E-46 |
| MS.gene049369 | MS.gene064168 | 0.812797 | 3.54E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene064168 | 0.810722 | 1.00E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene064168 | 0.844173 | 8.91E-59 | -1.69E-46 |
| MS.gene049661 | MS.gene064168 | 0.828615 | 8.15E-55 | -1.69E-46 |
| MS.gene049662 | MS.gene064168 | 0.825992 | 3.46E-54 | -1.69E-46 |
| MS.gene049681 | MS.gene064168 | 0.801107 | 1.05E-48 | -1.69E-46 |
| MS.gene050122 | MS.gene064168 | 0.819428 | 1.17E-52 | -1.69E-46 |
| MS.gene050380 | MS.gene064168 | -0.811193 | 7.91E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene064168 | 0.8223 | 2.55E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene064168 | 0.808391 | 3.17E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene064168 | 0.842469 | 2.54E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene064168 | 0.84813 | 7.45E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene064168 | 0.828875 | 7.05E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene064168 | 0.883588 | 3.95E-71 | -1.69E-46 |
| MS.gene051113 | MS.gene064168 | -0.813753 | 2.18E-51 | -1.69E-46 |
| MS.gene051255 | MS.gene064168 | 0.835389 | 1.73E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene064168 | 0.827068 | 1.92E-54 | -1.69E-46 |
| MS.gene051605 | MS.gene064168 | 0.809349 | 1.98E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene064168 | 0.82731 | 1.68E-54 | -1.69E-46 |
| MS.gene051877 | MS.gene064168 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene064168 | 0.816212 | 6.21E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene064168 | 0.833469 | 5.24E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene064168 | 0.8168 | 4.59E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene064168 | 0.812063 | 5.12E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene064168 | 0.835954 | 1.24E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene064168 | 0.835129 | 2.01E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene064168 | 0.822209 | 2.68E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene064168 | 0.816825 | 4.53E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene064168 | 0.820976 | 5.16E-53 | -1.69E-46 |
| MS.gene052501 | MS.gene064168 | 0.813969 | 1.96E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene064168 | 0.823172 | 1.60E-53 | -1.69E-46 |
| MS.gene052615 | MS.gene064168 | 0.807589 | 4.70E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene064168 | 0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene052999 | MS.gene064168 | 0.812705 | 3.71E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene064168 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene064168 | 0.826128 | 3.21E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene064168 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene053406 | MS.gene064168 | -0.802534 | 5.36E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene064168 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene064168 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene064168 | 0.836117 | 1.13E-56 | -1.69E-46 |
| MS.gene053758 | MS.gene064168 | 0.816108 | 6.55E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene064168 | 0.810859 | 9.35E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene064168 | 0.826378 | 2.80E-54 | -1.69E-46 |
| MS.gene054173 | MS.gene064168 | 0.804121 | 2.52E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene064168 | 0.837189 | 6.02E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene064168 | 0.838916 | 2.16E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene064168 | 0.859548 | 3.83E-63 | -1.69E-46 |
| MS.gene055277 | MS.gene064168 | 0.824376 | 8.35E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene064168 | 0.825564 | 4.38E-54 | -1.69E-46 |
| MS.gene055486 | MS.gene064168 | 0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene064168 | 0.812098 | 5.03E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene064168 | 0.825801 | 3.84E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene064168 | 0.821502 | 3.90E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene064168 | 0.824105 | 9.66E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene064168 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene05602 | MS.gene064168 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene064168 | 0.837782 | 4.24E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene064168 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene064168 | 0.821175 | 4.64E-53 | -1.69E-46 |
| MS.gene056422 | MS.gene064168 | 0.812896 | 3.37E-51 | -1.69E-46 |
| MS.gene056448 | MS.gene064168 | 0.815188 | 1.05E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene064168 | 0.873648 | 1.25E-67 | -1.69E-46 |
| MS.gene05664 | MS.gene064168 | 0.807856 | 4.12E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene064168 | 0.801203 | 1.01E-48 | -1.69E-46 |
| MS.gene05666 | MS.gene064168 | 0.805752 | 1.15E-49 | -1.69E-46 |
| MS.gene056942 | MS.gene064168 | 0.826367 | 2.82E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene064168 | 0.82072 | 5.91E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene064168 | 0.826999 | 1.99E-54 | -1.69E-46 |
| MS.gene057146 | MS.gene064168 | 0.840435 | 8.71E-58 | -1.69E-46 |
| MS.gene057310 | MS.gene064168 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene064168 | 0.810799 | 9.63E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene064168 | 0.816362 | 5.75E-52 | -1.69E-46 |
| MS.gene057476 | MS.gene064168 | 0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene064168 | 0.816828 | 4.52E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene064168 | 0.866917 | 2.01E-65 | -1.69E-46 |
| MS.gene057823 | MS.gene064168 | 0.86512 | 7.44E-65 | -1.69E-46 |
| MS.gene057825 | MS.gene064168 | 0.818956 | 1.49E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene064168 | 0.807924 | 3.98E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene064168 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene064168 | 0.827029 | 1.96E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene064168 | 0.80712 | 5.90E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene064168 | 0.807692 | 4.46E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene064168 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene064168 | 0.849263 | 3.62E-60 | -1.69E-46 |
| MS.gene058948 | MS.gene064168 | 0.810621 | 1.05E-50 | -1.69E-46 |
| MS.gene058995 | MS.gene064168 | 0.801489 | 8.79E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene064168 | 0.813255 | 2.81E-51 | -1.69E-46 |
| MS.gene059141 | MS.gene064168 | 0.817162 | 3.80E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene064168 | 0.827771 | 1.30E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene064168 | 0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene064168 | 0.813318 | 2.72E-51 | -1.69E-46 |
| MS.gene059368 | MS.gene064168 | 0.816581 | 5.14E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene064168 | 0.827395 | 1.60E-54 | -1.69E-46 |
| MS.gene059455 | MS.gene064168 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene064168 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene059674 | MS.gene064168 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene064168 | 0.846252 | 2.44E-59 | -1.69E-46 |
| MS.gene059692 | MS.gene064168 | 0.831183 | 1.93E-55 | -1.69E-46 |
| MS.gene059695 | MS.gene064168 | 0.835057 | 2.09E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene064168 | 0.857499 | 1.57E-62 | -1.69E-46 |
| MS.gene059749 | MS.gene064168 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene064168 | 0.827988 | 1.15E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene064168 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene064168 | 0.835887 | 1.29E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene064168 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene064168 | 0.848884 | 4.61E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene064168 | 0.803567 | 3.28E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene064168 | 0.857443 | 1.63E-62 | -1.69E-46 |
| MS.gene060837 | MS.gene064168 | 0.854806 | 9.63E-62 | -1.69E-46 |
| MS.gene061041 | MS.gene064168 | 0.826332 | 2.87E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene064168 | 0.805618 | 1.22E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene064168 | 0.825232 | 5.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064168 | MS.gene22809 | PPI |
| MS.gene064168 | MS.gene43375 | PPI |
| MS.gene064168 | MS.gene86023 | PPI |
| MS.gene064168 | MS.gene79751 | PPI |
| MS.gene064168 | MS.gene046366 | PPI |
| MS.gene59583 | MS.gene064168 | PPI |
| MS.gene064168 | MS.gene59582 | PPI |
| MS.gene064168 | MS.gene95297 | PPI |
| MS.gene95295 | MS.gene064168 | PPI |
| MS.gene064168 | MS.gene79749 | PPI |
| MS.gene064168 | MS.gene95299 | PPI |
| MS.gene064168 | MS.gene024458 | PPI |
| MS.gene050633 | MS.gene064168 | PPI |
| MS.gene064168 | MS.gene000373 | PPI |
| MS.gene064168 | MS.gene41352 | PPI |
| MS.gene064168 | MS.gene025922 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064168.t1 | MTR_0102s0060 | 97.739 | 575 | 7 | 2 | 1 | 573 | 1 | 571 | 0.0 | 1162 |
| MS.gene064168.t1 | MTR_7g117110 | 50.091 | 551 | 265 | 4 | 23 | 573 | 11 | 551 | 0.0 | 572 |
| MS.gene064168.t1 | MTR_8g027920 | 46.835 | 553 | 280 | 6 | 21 | 573 | 9 | 547 | 0.0 | 531 |
| MS.gene064168.t1 | MTR_8g027955 | 47.016 | 553 | 279 | 6 | 21 | 573 | 16 | 554 | 0.0 | 528 |
| MS.gene064168.t1 | MTR_8g027965 | 46.835 | 553 | 280 | 6 | 21 | 573 | 9 | 547 | 0.0 | 528 |
| MS.gene064168.t1 | MTR_8g027970 | 43.942 | 553 | 296 | 6 | 21 | 573 | 9 | 547 | 8.01e-178 | 514 |
| MS.gene064168.t1 | MTR_7g117110 | 47.264 | 402 | 202 | 4 | 23 | 424 | 11 | 402 | 1.26e-129 | 385 |
| MS.gene064168.t1 | MTR_4g045903 | 35.130 | 575 | 340 | 9 | 9 | 573 | 23 | 574 | 5.75e-124 | 378 |
| MS.gene064168.t1 | MTR_8g467000 | 35.284 | 564 | 341 | 6 | 23 | 573 | 15 | 567 | 1.39e-122 | 374 |
| MS.gene064168.t1 | MTR_0035s0150 | 34.483 | 551 | 339 | 5 | 26 | 573 | 23 | 554 | 3.71e-118 | 362 |
| MS.gene064168.t1 | MTR_2g081860 | 34.752 | 564 | 341 | 8 | 26 | 573 | 17 | 569 | 6.82e-118 | 362 |
| MS.gene064168.t1 | MTR_1g088765 | 35.221 | 565 | 343 | 10 | 23 | 573 | 11 | 566 | 1.91e-115 | 355 |
| MS.gene064168.t1 | MTR_5g016320 | 33.453 | 556 | 349 | 5 | 26 | 573 | 24 | 566 | 2.09e-112 | 348 |
| MS.gene064168.t1 | MTR_1g088765 | 37.831 | 415 | 240 | 8 | 173 | 573 | 12 | 422 | 4.90e-94 | 295 |
| MS.gene064168.t1 | MTR_8g037720 | 45.763 | 295 | 136 | 2 | 278 | 572 | 136 | 406 | 1.84e-87 | 278 |
| MS.gene064168.t1 | MTR_8g037720 | 37.037 | 135 | 78 | 2 | 23 | 157 | 2 | 129 | 3.50e-17 | 84.7 |
| MS.gene064168.t1 | MTR_7g094190 | 31.119 | 572 | 353 | 16 | 23 | 573 | 5 | 556 | 5.31e-86 | 278 |
| MS.gene064168.t1 | MTR_1g047730 | 50.862 | 232 | 103 | 1 | 342 | 573 | 114 | 334 | 2.32e-76 | 246 |
| MS.gene064168.t1 | MTR_7g094190 | 32.506 | 443 | 270 | 12 | 147 | 573 | 27 | 456 | 2.90e-71 | 237 |
| MS.gene064168.t1 | MTR_7g094330 | 29.965 | 287 | 161 | 9 | 147 | 430 | 27 | 276 | 5.21e-38 | 142 |
| MS.gene064168.t1 | MTR_3g023280 | 39.560 | 91 | 46 | 5 | 491 | 573 | 8 | 97 | 3.83e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064168.t1 | AT4G03400 | 67.979 | 559 | 171 | 4 | 22 | 573 | 8 | 565 | 0.0 | 804 |
| MS.gene064168.t1 | AT4G03400 | 67.979 | 559 | 171 | 4 | 22 | 573 | 8 | 565 | 0.0 | 804 |
| MS.gene064168.t1 | AT2G46370 | 47.541 | 549 | 275 | 4 | 25 | 573 | 24 | 559 | 0.0 | 557 |
| MS.gene064168.t1 | AT2G46370 | 47.541 | 549 | 275 | 4 | 25 | 573 | 13 | 548 | 0.0 | 557 |
| MS.gene064168.t1 | AT2G46370 | 47.541 | 549 | 275 | 4 | 25 | 573 | 13 | 548 | 0.0 | 557 |
| MS.gene064168.t1 | AT2G46370 | 49.895 | 475 | 230 | 2 | 99 | 573 | 3 | 469 | 0.0 | 520 |
| MS.gene064168.t1 | AT4G37390 | 35.009 | 557 | 342 | 7 | 26 | 573 | 24 | 569 | 3.69e-124 | 378 |
| MS.gene064168.t1 | AT1G28130 | 34.669 | 574 | 342 | 8 | 23 | 573 | 11 | 574 | 9.63e-121 | 369 |
| MS.gene064168.t1 | AT4G27260 | 34.938 | 561 | 341 | 6 | 26 | 573 | 25 | 574 | 4.12e-119 | 365 |
| MS.gene064168.t1 | AT1G59500 | 35.791 | 556 | 333 | 8 | 26 | 573 | 24 | 563 | 6.00e-119 | 364 |
| MS.gene064168.t1 | AT5G54510 | 34.574 | 564 | 345 | 6 | 23 | 573 | 22 | 574 | 2.18e-118 | 363 |
| MS.gene064168.t1 | AT2G23170 | 34.414 | 555 | 341 | 9 | 26 | 573 | 23 | 561 | 2.36e-116 | 358 |
| MS.gene064168.t1 | AT2G14960 | 32.973 | 555 | 343 | 7 | 26 | 573 | 23 | 555 | 5.09e-111 | 344 |
| MS.gene064168.t1 | AT5G13350 | 33.986 | 562 | 340 | 11 | 26 | 573 | 14 | 558 | 4.58e-110 | 341 |
| MS.gene064168.t1 | AT5G13350 | 33.986 | 562 | 340 | 11 | 26 | 573 | 14 | 558 | 4.58e-110 | 341 |
| MS.gene064168.t1 | AT1G23160 | 34.107 | 560 | 332 | 9 | 29 | 573 | 18 | 555 | 4.35e-108 | 336 |
| MS.gene064168.t1 | AT2G47750 | 33.215 | 563 | 351 | 10 | 21 | 573 | 7 | 554 | 5.93e-107 | 333 |
| MS.gene064168.t1 | AT5G13320 | 34.050 | 558 | 335 | 9 | 29 | 573 | 15 | 552 | 5.99e-107 | 333 |
| MS.gene064168.t1 | AT5G13320 | 34.050 | 558 | 335 | 9 | 29 | 573 | 15 | 552 | 5.99e-107 | 333 |
| MS.gene064168.t1 | AT5G13320 | 34.050 | 558 | 335 | 9 | 29 | 573 | 30 | 567 | 9.08e-107 | 333 |
| MS.gene064168.t1 | AT5G13360 | 33.986 | 562 | 339 | 10 | 26 | 573 | 14 | 557 | 1.23e-106 | 333 |
| MS.gene064168.t1 | AT5G13360 | 33.986 | 562 | 339 | 10 | 26 | 573 | 14 | 557 | 1.23e-106 | 333 |
| MS.gene064168.t1 | AT5G13360 | 33.986 | 562 | 339 | 10 | 26 | 573 | 92 | 635 | 1.12e-105 | 332 |
| MS.gene064168.t1 | AT1G48660 | 31.892 | 555 | 350 | 7 | 29 | 573 | 10 | 546 | 1.14e-105 | 330 |
| MS.gene064168.t1 | AT1G48660 | 32.007 | 553 | 349 | 7 | 29 | 573 | 10 | 543 | 6.32e-105 | 327 |
| MS.gene064168.t1 | AT5G13370 | 33.746 | 566 | 336 | 13 | 26 | 573 | 14 | 558 | 2.11e-104 | 327 |
| MS.gene064168.t1 | AT5G51470 | 33.092 | 553 | 343 | 5 | 29 | 573 | 16 | 549 | 3.22e-102 | 321 |
| MS.gene064168.t1 | AT5G13380 | 32.686 | 566 | 341 | 11 | 26 | 573 | 44 | 587 | 2.82e-99 | 314 |
| MS.gene064168.t1 | AT1G28130 | 36.941 | 425 | 241 | 7 | 172 | 573 | 11 | 431 | 3.76e-95 | 299 |
| MS.gene064168.t1 | AT1G48670 | 30.216 | 556 | 306 | 13 | 29 | 573 | 11 | 495 | 3.16e-86 | 277 |
| MS.gene064168.t1 | AT1G48670 | 35.949 | 395 | 231 | 7 | 189 | 573 | 2 | 384 | 5.12e-86 | 273 |
| MS.gene064168.t1 | AT5G51470 | 33.763 | 465 | 289 | 4 | 117 | 573 | 6 | 459 | 4.08e-85 | 273 |
| MS.gene064168.t1 | AT1G48690 | 29.688 | 192 | 124 | 2 | 29 | 220 | 10 | 190 | 9.52e-18 | 82.0 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAAATAAAGTTCAATTT+TGG | 0.072692 | 4.2:-56827797 | None:intergenic |
| ACCCTTCCTCCTTCCCTTAT+TGG | 0.088269 | 4.2:-56821235 | None:intergenic |
| AAAATTGAGAGAGGCTATTT+TGG | 0.167851 | 4.2:+56821597 | MS.gene064168:CDS |
| AAAATAGCCTCTCTCAATTT+TGG | 0.172918 | 4.2:-56821595 | None:intergenic |
| AGGAACTTTCAAGAAGATTT+TGG | 0.177553 | 4.2:+56828123 | MS.gene064168:CDS |
| GCCACTTGAACTTTGCATTT+TGG | 0.203128 | 4.2:+56828096 | MS.gene064168:CDS |
| TTTGCAGAGTTTATCCAATA+AGG | 0.224019 | 4.2:+56821221 | MS.gene064168:intron |
| AATAAGTCCAAACACAAATT+TGG | 0.225655 | 4.2:+56821624 | MS.gene064168:CDS |
| TTAACATTTGGCCAAATCTT+TGG | 0.226975 | 4.2:-56821706 | None:intergenic |
| GTTATTTACTGGGAGATTAA+AGG | 0.230982 | 4.2:+56827974 | MS.gene064168:CDS |
| ACATATTGTCACCTCCTTCT+TGG | 0.270579 | 4.2:+56821430 | MS.gene064168:CDS |
| TGCACCTAGGAGTCTTAAAT+TGG | 0.272433 | 4.2:-56828177 | None:intergenic |
| CTGGTCACTACGTTATTTAC+TGG | 0.272776 | 4.2:+56827963 | MS.gene064168:CDS |
| TTGGTTTGATTCCAAAGATT+TGG | 0.301493 | 4.2:+56821695 | MS.gene064168:CDS |
| GCTAGTAAAATCAACAATTT+CGG | 0.308582 | 4.2:-56827918 | None:intergenic |
| CCTTTGATTAGTGCTGATTA+TGG | 0.311269 | 4.2:+56821802 | MS.gene064168:CDS |
| ACAGCAAATGTAACTTCTTC+TGG | 0.332953 | 4.2:-56821871 | None:intergenic |
| TTTGAAGCCAAATTTGTGTT+TGG | 0.346442 | 4.2:-56821631 | None:intergenic |
| TTGGATAATTTCATAGCAAA+TGG | 0.352160 | 4.2:+56828142 | MS.gene064168:CDS |
| GCATATAAGTACTTAACATT+TGG | 0.354805 | 4.2:-56821718 | None:intergenic |
| ATAATCTTGGACAATGGAAT+TGG | 0.356851 | 4.2:-56821976 | None:intergenic |
| CTTAAGGAAAGAGTGGTTAT+AGG | 0.357105 | 4.2:-56819388 | None:intergenic |
| GAATATCTCAAGAAATGGTT+AGG | 0.367643 | 4.2:+56819223 | MS.gene064168:CDS |
| AAACTTAGACATTATGCAAA+TGG | 0.367702 | 4.2:+56821775 | MS.gene064168:CDS |
| CTATAACCACTCTTTCCTTA+AGG | 0.386150 | 4.2:+56819389 | MS.gene064168:CDS |
| CTAGAGAAAGTTGATTGGTT+TGG | 0.388971 | 4.2:+56821676 | MS.gene064168:CDS |
| TTGCAGAGTTTATCCAATAA+GGG | 0.407774 | 4.2:+56821222 | MS.gene064168:intron |
| TTAAACTTACAGGGTTATAC+AGG | 0.407977 | 4.2:+56827726 | MS.gene064168:intron |
| ACTTCTTCTGGTGGCAAACT+AGG | 0.412517 | 4.2:-56821859 | None:intergenic |
| CTGAGAAGTGTTGGTTCCAT+TGG | 0.419789 | 4.2:-56819058 | None:intergenic |
| CCATTGTCCAAGATTATAGT+AGG | 0.419799 | 4.2:+56821982 | MS.gene064168:CDS |
| TGGATAATTTCATAGCAAAT+GGG | 0.420226 | 4.2:+56828143 | MS.gene064168:CDS |
| AAATCAGCATGTGAAGCAAT+AGG | 0.420636 | 4.2:-56819307 | None:intergenic |
| TGATGATTGTTGCAGAGAAA+TGG | 0.425098 | 4.2:+56828018 | MS.gene064168:CDS |
| TAGGAACCAATGAAGTGAAA+AGG | 0.433467 | 4.2:-56819288 | None:intergenic |
| CTGTTGTCCTACTATAATCT+TGG | 0.439515 | 4.2:-56821989 | None:intergenic |
| AACAACTGTTTCAAAACAAA+AGG | 0.441945 | 4.2:+56821277 | MS.gene064168:CDS |
| AGTATGAAAACATTATTAGT+TGG | 0.446576 | 4.2:+56819122 | MS.gene064168:CDS |
| GGATTACAATATATTCGAAA+TGG | 0.448428 | 4.2:+56819246 | MS.gene064168:CDS |
| GTGTGGAATATCTCAAGAAA+TGG | 0.451140 | 4.2:+56819218 | MS.gene064168:CDS |
| AGGGTTCTTGAATTCATATA+CGG | 0.454849 | 4.2:+56821253 | MS.gene064168:CDS |
| AACTTAGACATTATGCAAAT+GGG | 0.457425 | 4.2:+56821776 | MS.gene064168:CDS |
| GGAGATGTGGTAGAAGTGTC+TGG | 0.462568 | 4.2:+56827758 | MS.gene064168:CDS |
| TGCAGTTCTGGAACCACAGA+TGG | 0.462678 | 4.2:+56820001 | MS.gene064168:intron |
| TACTTATATGCAATAATGAC+AGG | 0.466249 | 4.2:+56821730 | MS.gene064168:CDS |
| AGGAGCTAGAGAAAGTTGAT+TGG | 0.466252 | 4.2:+56821671 | MS.gene064168:CDS |
| TTGAGCACTATGTCGGGTAA+AGG | 0.468379 | 4.2:-56820041 | None:intergenic |
| CTCTCTCTACCACTAGTTGA+AGG | 0.468806 | 4.2:-56827868 | None:intergenic |
| TTCTCTCCAATGTTCTTCAA+AGG | 0.473269 | 4.2:-56821524 | None:intergenic |
| ATAGGTTGTTGAGTGAGTAA+AGG | 0.478480 | 4.2:-56819370 | None:intergenic |
| AGGAACCAATGAAGTGAAAA+GGG | 0.480698 | 4.2:-56819287 | None:intergenic |
| TGAACCAATTTAAGACTCCT+AGG | 0.482138 | 4.2:+56828173 | MS.gene064168:CDS |
| TCGGAAATTCTCTGAATGAA+TGG | 0.484621 | 4.2:-56819334 | None:intergenic |
| CACTGAAAATCACTTCTTGA+GGG | 0.485723 | 4.2:-56821390 | None:intergenic |
| CAGAGTAGAAGAGGCCAAGA+AGG | 0.500086 | 4.2:-56821444 | None:intergenic |
| AAGAAGGAGGTGACAATATG+TGG | 0.502219 | 4.2:-56821428 | None:intergenic |
| AATTTGGCTTCAAAATTACA+AGG | 0.505896 | 4.2:+56821640 | MS.gene064168:CDS |
| AATATCTCAAGAAATGGTTA+GGG | 0.508183 | 4.2:+56819224 | MS.gene064168:CDS |
| GAACTCAAAGTAAGAGAATG+TGG | 0.508691 | 4.2:-56821899 | None:intergenic |
| ATCCAATAAGGGAAGGAGGA+AGG | 0.508750 | 4.2:+56821233 | MS.gene064168:CDS |
| ATTATGGTTCAACTGAGAGC+TGG | 0.510234 | 4.2:+56821818 | MS.gene064168:CDS |
| AAGTGTCTGGATTTCACAAT+GGG | 0.511726 | 4.2:+56827771 | MS.gene064168:CDS |
| TCCAATAAGGGAAGGAGGAA+GGG | 0.513464 | 4.2:+56821234 | MS.gene064168:CDS |
| GGGTTATACAGGTGCAGACT+AGG | 0.516374 | 4.2:+56827737 | MS.gene064168:intron |
| GGTTCAACTGAGAGCTGGAT+TGG | 0.516866 | 4.2:+56821823 | MS.gene064168:CDS |
| CGAAATGGAACCATGTGCAT+TGG | 0.518373 | 4.2:+56819261 | MS.gene064168:CDS |
| TGAGCACTATGTCGGGTAAA+GGG | 0.525938 | 4.2:-56820040 | None:intergenic |
| ATCATCAATAGCAATGGTTG+TGG | 0.528537 | 4.2:+56819091 | MS.gene064168:CDS |
| CGTGGTTTGAGCACTATGTC+GGG | 0.529475 | 4.2:-56820047 | None:intergenic |
| TCTTGTTTATTTCTATGAAG+AGG | 0.529588 | 4.2:-56821925 | None:intergenic |
| ATCCATGATCAGCAAAAGAT+AGG | 0.531768 | 4.2:-56828042 | None:intergenic |
| TATCAGCAGCATATAGATCA+AGG | 0.536272 | 4.2:+56820086 | MS.gene064168:CDS |
| TCACCACCTTTGAAGAACAT+TGG | 0.538044 | 4.2:+56821518 | MS.gene064168:CDS |
| TCTCCAATGTTCTTCAAAGG+TGG | 0.539352 | 4.2:-56821521 | None:intergenic |
| TCCAAAATGCAAAGTTCAAG+TGG | 0.541118 | 4.2:-56828097 | None:intergenic |
| CTACTTGATCAGAGTAGAAG+AGG | 0.541894 | 4.2:-56821453 | None:intergenic |
| GCGTGGTTTGAGCACTATGT+CGG | 0.549957 | 4.2:-56820048 | None:intergenic |
| GTTGGTTCGAAGATGTGTCT+AGG | 0.559280 | 4.2:+56819140 | MS.gene064168:CDS |
| TGGTCACTACGTTATTTACT+GGG | 0.562828 | 4.2:+56827964 | MS.gene064168:CDS |
| CCTACTATAATCTTGGACAA+TGG | 0.566836 | 4.2:-56821982 | None:intergenic |
| GAATTTCTGCCTCCCATCTG+TGG | 0.570306 | 4.2:-56820014 | None:intergenic |
| AACAAAAGGAAATTTAACAG+TGG | 0.573015 | 4.2:+56821291 | MS.gene064168:CDS |
| TTGTTGTAGCTGAGAAGTGT+TGG | 0.576787 | 4.2:-56819067 | None:intergenic |
| ACAAAAGGAAATTTAACAGT+GGG | 0.579232 | 4.2:+56821292 | MS.gene064168:CDS |
| CCACTGAAAATCACTTCTTG+AGG | 0.583439 | 4.2:-56821391 | None:intergenic |
| GTTTATCCAATAAGGGAAGG+AGG | 0.586787 | 4.2:+56821229 | MS.gene064168:CDS |
| GCAGTTCTGGAACCACAGAT+GGG | 0.589665 | 4.2:+56820002 | MS.gene064168:intron |
| TTACTGGGAGATTAAAGGAG+AGG | 0.590174 | 4.2:+56827979 | MS.gene064168:CDS |
| AACAACATCATCAATAGCAA+TGG | 0.591377 | 4.2:+56819085 | MS.gene064168:CDS |
| CCATAATCAGCACTAATCAA+AGG | 0.602203 | 4.2:-56821802 | None:intergenic |
| CAGTAAATAACGTAGTGACC+AGG | 0.605471 | 4.2:-56827962 | None:intergenic |
| AGGTGACCTTAAGGAAAGAG+TGG | 0.609816 | 4.2:-56819395 | None:intergenic |
| GGATAATTTCATAGCAAATG+GGG | 0.610908 | 4.2:+56828144 | MS.gene064168:CDS |
| AGAGTTTATCCAATAAGGGA+AGG | 0.613843 | 4.2:+56821226 | MS.gene064168:intron |
| TAAAGTGAATATTTGAAGCG+TGG | 0.617745 | 4.2:-56820065 | None:intergenic |
| ATTTGTAATGACATTAGACA+TGG | 0.619879 | 4.2:+56821547 | MS.gene064168:CDS |
| TCTGAAACAAAACCATGGTG+TGG | 0.619947 | 4.2:+56819201 | MS.gene064168:CDS |
| GAAGTGTCTGGATTTCACAA+TGG | 0.620179 | 4.2:+56827770 | MS.gene064168:CDS |
| AGTAGAAGAGGCCAAGAAGG+AGG | 0.620885 | 4.2:-56821441 | None:intergenic |
| TTCATTCAGAGAATTTCCGA+TGG | 0.622534 | 4.2:+56819337 | MS.gene064168:CDS |
| CAGGTGCAGACTAGGAGATG+TGG | 0.622806 | 4.2:+56827745 | MS.gene064168:CDS |
| AACTCAAAGTAAGAGAATGT+GGG | 0.623136 | 4.2:-56821898 | None:intergenic |
| TAAAGGAGCAGTGTCACCAT+CGG | 0.631135 | 4.2:-56819353 | None:intergenic |
| GCAGATGTAACTAATGAACC+TGG | 0.631349 | 4.2:+56827944 | MS.gene064168:CDS |
| AAAATTACAAGGCTATTGTG+AGG | 0.634297 | 4.2:+56821651 | MS.gene064168:CDS |
| TCTTGAGATATTCCACACCA+TGG | 0.638732 | 4.2:-56819213 | None:intergenic |
| TAAGTCACCAAAATTGAGAG+AGG | 0.640371 | 4.2:+56821588 | MS.gene064168:CDS |
| AGAGAAGGACCTTCAACTAG+TGG | 0.647323 | 4.2:+56827859 | MS.gene064168:CDS |
| GCAAATGTAACTTCTTCTGG+TGG | 0.654228 | 4.2:-56821868 | None:intergenic |
| GAAGATGTGTCTAGGAACAC+AGG | 0.656944 | 4.2:+56819148 | MS.gene064168:CDS |
| AAAAGGGATTCCAATGCACA+TGG | 0.659062 | 4.2:-56819271 | None:intergenic |
| GTTCTGGAACCACAGATGGG+AGG | 0.665630 | 4.2:+56820005 | MS.gene064168:intron |
| CTTCAACTAGTGGTAGAGAG+AGG | 0.670697 | 4.2:+56827869 | MS.gene064168:CDS |
| TAATACCTGTAAAAGTTGTG+AGG | 0.672649 | 4.2:-56822023 | None:intergenic |
| AATATTCTGAAACAAAACCA+TGG | 0.689332 | 4.2:+56819196 | MS.gene064168:CDS |
| ATATCTCAAGAAATGGTTAG+GGG | 0.711051 | 4.2:+56819225 | MS.gene064168:CDS |
| CATGCTATAGACAAAAGCTG+AGG | 0.714203 | 4.2:-56821485 | None:intergenic |
| ACTTATATGCAATAATGACA+GGG | 0.716264 | 4.2:+56821731 | MS.gene064168:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 56819061 | 56828194 | 56819061 | ID=MS.gene064168 |
| chr4.2 | mRNA | 56819061 | 56828194 | 56819061 | ID=MS.gene064168.t1;Parent=MS.gene064168 |
| chr4.2 | exon | 56819061 | 56819410 | 56819061 | ID=MS.gene064168.t1.exon1;Parent=MS.gene064168.t1 |
| chr4.2 | CDS | 56819061 | 56819410 | 56819061 | ID=cds.MS.gene064168.t1;Parent=MS.gene064168.t1 |
| chr4.2 | exon | 56820006 | 56820107 | 56820006 | ID=MS.gene064168.t1.exon2;Parent=MS.gene064168.t1 |
| chr4.2 | CDS | 56820006 | 56820107 | 56820006 | ID=cds.MS.gene064168.t1;Parent=MS.gene064168.t1 |
| chr4.2 | exon | 56821228 | 56822039 | 56821228 | ID=MS.gene064168.t1.exon3;Parent=MS.gene064168.t1 |
| chr4.2 | CDS | 56821228 | 56822039 | 56821228 | ID=cds.MS.gene064168.t1;Parent=MS.gene064168.t1 |
| chr4.2 | exon | 56827738 | 56828194 | 56827738 | ID=MS.gene064168.t1.exon4;Parent=MS.gene064168.t1 |
| chr4.2 | CDS | 56827738 | 56828194 | 56827738 | ID=cds.MS.gene064168.t1;Parent=MS.gene064168.t1 |
| Gene Sequence |
| Protein sequence |
