Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99230.t1 | XP_013443163.1 | 98.5 | 588 | 9 | 0 | 1 | 588 | 1 | 588 | 0.00E+00 | 1175.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99230.t1 | O82333 | 82.4 | 591 | 99 | 3 | 1 | 588 | 1 | 589 | 1.4e-288 | 993.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99230.t1 | A0A072TJY1 | 98.5 | 588 | 9 | 0 | 1 | 588 | 1 | 588 | 0.0e+00 | 1175.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053964 | MS.gene99230 | 0.963647 | 2.42E-122 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045936 | MS.gene99230 | PPI |
| MS.gene99230 | MS.gene86023 | PPI |
| MS.gene79749 | MS.gene99230 | PPI |
| MS.gene050633 | MS.gene99230 | PPI |
| MS.gene34650 | MS.gene99230 | PPI |
| MS.gene024458 | MS.gene99230 | PPI |
| MS.gene95295 | MS.gene99230 | PPI |
| MS.gene25516 | MS.gene99230 | PPI |
| MS.gene41352 | MS.gene99230 | PPI |
| MS.gene99230 | MS.gene95299 | PPI |
| MS.gene79751 | MS.gene99230 | PPI |
| MS.gene99230 | MS.gene000373 | PPI |
| MS.gene59583 | MS.gene99230 | PPI |
| MS.gene22809 | MS.gene99230 | PPI |
| MS.gene025922 | MS.gene99230 | PPI |
| MS.gene43375 | MS.gene99230 | PPI |
| MS.gene59582 | MS.gene99230 | PPI |
| MS.gene36841 | MS.gene99230 | PPI |
| MS.gene046366 | MS.gene99230 | PPI |
| MS.gene95297 | MS.gene99230 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99230.t1 | MTR_0035s0150 | 98.469 | 588 | 9 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1208 |
| MS.gene99230.t1 | MTR_5g016320 | 77.409 | 602 | 120 | 4 | 1 | 588 | 1 | 600 | 0.0 | 957 |
| MS.gene99230.t1 | MTR_8g467000 | 64.141 | 594 | 195 | 2 | 9 | 584 | 4 | 597 | 0.0 | 810 |
| MS.gene99230.t1 | MTR_4g045903 | 62.607 | 583 | 198 | 5 | 17 | 584 | 27 | 604 | 0.0 | 762 |
| MS.gene99230.t1 | MTR_2g081860 | 61.224 | 588 | 207 | 3 | 18 | 584 | 12 | 599 | 0.0 | 760 |
| MS.gene99230.t1 | MTR_1g088765 | 52.951 | 593 | 248 | 7 | 18 | 584 | 9 | 596 | 0.0 | 623 |
| MS.gene99230.t1 | MTR_1g088765 | 53.319 | 452 | 192 | 5 | 152 | 584 | 1 | 452 | 3.80e-167 | 483 |
| MS.gene99230.t1 | MTR_7g117110 | 39.367 | 569 | 327 | 8 | 21 | 576 | 12 | 575 | 1.99e-137 | 412 |
| MS.gene99230.t1 | MTR_8g027970 | 38.761 | 565 | 332 | 7 | 21 | 576 | 12 | 571 | 5.68e-136 | 408 |
| MS.gene99230.t1 | MTR_8g027920 | 37.925 | 559 | 333 | 8 | 27 | 576 | 18 | 571 | 2.41e-135 | 406 |
| MS.gene99230.t1 | MTR_8g027965 | 37.943 | 564 | 338 | 6 | 21 | 576 | 12 | 571 | 4.37e-135 | 406 |
| MS.gene99230.t1 | MTR_8g027955 | 37.876 | 565 | 337 | 8 | 21 | 576 | 19 | 578 | 4.15e-134 | 404 |
| MS.gene99230.t1 | MTR_0102s0060 | 33.158 | 570 | 357 | 4 | 23 | 571 | 22 | 588 | 5.65e-121 | 370 |
| MS.gene99230.t1 | MTR_7g094190 | 31.414 | 573 | 362 | 12 | 19 | 567 | 4 | 569 | 5.95e-86 | 278 |
| MS.gene99230.t1 | MTR_7g117110 | 37.179 | 390 | 234 | 4 | 21 | 400 | 12 | 400 | 2.75e-81 | 261 |
| MS.gene99230.t1 | MTR_7g094190 | 31.910 | 445 | 278 | 9 | 141 | 567 | 32 | 469 | 4.13e-68 | 229 |
| MS.gene99230.t1 | MTR_8g037720 | 36.335 | 322 | 166 | 7 | 268 | 576 | 136 | 431 | 2.14e-62 | 212 |
| MS.gene99230.t1 | MTR_8g037720 | 41.414 | 99 | 55 | 1 | 24 | 119 | 3 | 101 | 2.60e-16 | 82.0 |
| MS.gene99230.t1 | MTR_1g047730 | 42.205 | 263 | 125 | 6 | 326 | 576 | 111 | 358 | 4.83e-62 | 209 |
| MS.gene99230.t1 | MTR_7g094330 | 30.576 | 278 | 150 | 7 | 141 | 408 | 32 | 276 | 4.50e-32 | 125 |
| MS.gene99230.t1 | MTR_3g023280 | 51.376 | 109 | 50 | 1 | 479 | 584 | 19 | 127 | 9.63e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99230.t1 | AT2G14960 | 82.403 | 591 | 99 | 3 | 1 | 588 | 1 | 589 | 0.0 | 1014 |
| MS.gene99230.t1 | AT4G37390 | 76.783 | 603 | 125 | 4 | 1 | 588 | 1 | 603 | 0.0 | 955 |
| MS.gene99230.t1 | AT2G23170 | 77.983 | 595 | 124 | 4 | 1 | 588 | 1 | 595 | 0.0 | 952 |
| MS.gene99230.t1 | AT1G59500 | 72.864 | 597 | 149 | 5 | 1 | 586 | 1 | 595 | 0.0 | 900 |
| MS.gene99230.t1 | AT5G54510 | 66.553 | 586 | 178 | 3 | 17 | 584 | 19 | 604 | 0.0 | 821 |
| MS.gene99230.t1 | AT4G27260 | 65.812 | 585 | 182 | 3 | 18 | 584 | 20 | 604 | 0.0 | 811 |
| MS.gene99230.t1 | AT1G28130 | 56.155 | 593 | 229 | 8 | 22 | 584 | 13 | 604 | 0.0 | 685 |
| MS.gene99230.t1 | AT2G47750 | 50.940 | 585 | 264 | 8 | 17 | 584 | 7 | 585 | 0.0 | 596 |
| MS.gene99230.t1 | AT1G23160 | 50.000 | 570 | 274 | 5 | 17 | 576 | 9 | 577 | 0.0 | 590 |
| MS.gene99230.t1 | AT5G13320 | 46.988 | 581 | 297 | 4 | 6 | 576 | 10 | 589 | 0.0 | 571 |
| MS.gene99230.t1 | AT5G13320 | 47.295 | 573 | 291 | 4 | 14 | 576 | 3 | 574 | 0.0 | 569 |
| MS.gene99230.t1 | AT5G13320 | 47.295 | 573 | 291 | 4 | 14 | 576 | 3 | 574 | 0.0 | 569 |
| MS.gene99230.t1 | AT5G13370 | 48.090 | 576 | 282 | 7 | 22 | 582 | 13 | 586 | 0.0 | 557 |
| MS.gene99230.t1 | AT5G13360 | 48.547 | 585 | 272 | 9 | 19 | 582 | 87 | 663 | 0.0 | 543 |
| MS.gene99230.t1 | AT5G13360 | 48.547 | 585 | 272 | 9 | 19 | 582 | 9 | 585 | 0.0 | 542 |
| MS.gene99230.t1 | AT5G13360 | 48.547 | 585 | 272 | 9 | 19 | 582 | 9 | 585 | 0.0 | 542 |
| MS.gene99230.t1 | AT5G13380 | 46.864 | 574 | 289 | 5 | 23 | 582 | 44 | 615 | 0.0 | 538 |
| MS.gene99230.t1 | AT1G28130 | 56.182 | 461 | 174 | 6 | 152 | 584 | 1 | 461 | 0.0 | 531 |
| MS.gene99230.t1 | AT5G13350 | 46.552 | 580 | 292 | 8 | 19 | 582 | 9 | 586 | 0.0 | 528 |
| MS.gene99230.t1 | AT5G13350 | 46.552 | 580 | 292 | 8 | 19 | 582 | 9 | 586 | 0.0 | 528 |
| MS.gene99230.t1 | AT1G48660 | 44.621 | 567 | 304 | 5 | 23 | 580 | 7 | 572 | 6.61e-180 | 521 |
| MS.gene99230.t1 | AT1G48660 | 45.053 | 566 | 300 | 6 | 23 | 580 | 7 | 569 | 6.89e-180 | 520 |
| MS.gene99230.t1 | AT5G51470 | 44.803 | 558 | 301 | 4 | 26 | 577 | 16 | 572 | 1.79e-172 | 502 |
| MS.gene99230.t1 | AT1G48670 | 41.918 | 563 | 267 | 6 | 26 | 580 | 11 | 521 | 9.45e-153 | 449 |
| MS.gene99230.t1 | AT5G51470 | 44.050 | 479 | 262 | 3 | 104 | 576 | 3 | 481 | 7.12e-142 | 420 |
| MS.gene99230.t1 | AT2G46370 | 39.254 | 563 | 323 | 9 | 26 | 576 | 17 | 572 | 9.77e-139 | 415 |
| MS.gene99230.t1 | AT2G46370 | 39.254 | 563 | 323 | 9 | 26 | 576 | 17 | 572 | 9.77e-139 | 415 |
| MS.gene99230.t1 | AT2G46370 | 39.254 | 563 | 323 | 9 | 26 | 576 | 28 | 583 | 1.05e-138 | 416 |
| MS.gene99230.t1 | AT1G48670 | 47.677 | 409 | 207 | 3 | 179 | 580 | 2 | 410 | 1.65e-137 | 406 |
| MS.gene99230.t1 | AT4G03400 | 34.669 | 574 | 343 | 6 | 25 | 571 | 14 | 582 | 4.87e-123 | 375 |
| MS.gene99230.t1 | AT4G03400 | 34.669 | 574 | 343 | 6 | 25 | 571 | 14 | 582 | 4.87e-123 | 375 |
| MS.gene99230.t1 | AT2G46370 | 38.600 | 500 | 290 | 7 | 87 | 576 | 1 | 493 | 1.45e-121 | 369 |
| MS.gene99230.t1 | AT1G48690 | 40.415 | 193 | 107 | 3 | 22 | 210 | 2 | 190 | 8.41e-41 | 147 |
Find 159 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATTACCTTATCCTTTC+AGG | 0.087684 | 5.4:+40835561 | None:intergenic |
| CCCGAAATTGGCATCATTTA+TGG | 0.099376 | 5.4:-40836480 | MS.gene99230:CDS |
| CGTTAAGTTTGAAGCGTTTA+AGG | 0.105133 | 5.4:+40838009 | None:intergenic |
| AATCGTTGAATTCTGTTTAT+AGG | 0.179457 | 5.4:-40835797 | MS.gene99230:CDS |
| TACAATGACATCTAAATATT+TGG | 0.200273 | 5.4:+40836400 | None:intergenic |
| ACCATAAATGATGCCAATTT+CGG | 0.222994 | 5.4:+40836479 | None:intergenic |
| AAGAATGCTCAAATGAAAAT+TGG | 0.234619 | 5.4:-40836454 | MS.gene99230:CDS |
| TACTCCTATAATGGAGCTTT+TGG | 0.260700 | 5.4:-40835634 | MS.gene99230:CDS |
| TATCAAACCCGACCCGAAAT+TGG | 0.272388 | 5.4:-40836492 | MS.gene99230:CDS |
| AAGGACACCAGGTGGTTTAT+TGG | 0.276363 | 5.4:-40836828 | MS.gene99230:CDS |
| AAAACTGATGCCAACAATTA+AGG | 0.280114 | 5.4:-40837587 | MS.gene99230:CDS |
| GAGTCCAAAAGCTCCATTAT+AGG | 0.283190 | 5.4:+40835630 | None:intergenic |
| CCATAAATGATGCCAATTTC+GGG | 0.284070 | 5.4:+40836480 | None:intergenic |
| GAATTCCTACCTCACGAATC+AGG | 0.303669 | 5.4:-40836209 | MS.gene99230:CDS |
| CATTCTTTCGACGCACAAAA+TGG | 0.304672 | 5.4:+40836045 | None:intergenic |
| TATTTAGATGTCATTGTAAC+TGG | 0.310356 | 5.4:-40836395 | MS.gene99230:CDS |
| ACATCTAAATATTTGGTGTT+AGG | 0.335608 | 5.4:+40836407 | None:intergenic |
| CTGGTCTTCTCCGTGCAATT+AGG | 0.337068 | 5.4:-40836616 | MS.gene99230:CDS |
| CAGGTCATTATGTGATATAT+TGG | 0.340991 | 5.4:-40835887 | MS.gene99230:CDS |
| TTGTAGTAACTTGTGAGAAC+TGG | 0.342828 | 5.4:+40836800 | None:intergenic |
| TTAGGTTCCTTCAGCTCAAT+TGG | 0.345131 | 5.4:-40836598 | MS.gene99230:CDS |
| CTTAAACGCTTCAAACTTAA+CGG | 0.349894 | 5.4:-40838008 | MS.gene99230:CDS |
| GCATTTGAGTATACATGCTT+TGG | 0.355525 | 5.4:+40836693 | None:intergenic |
| CAGCGCCGAGGCGGAGGACT+TGG | 0.357333 | 5.4:+40836648 | None:intergenic |
| ATGGGATGAGCAGAGAGAAT+TGG | 0.357351 | 5.4:+40837888 | None:intergenic |
| TCCAACTCTTCCTTAATTGT+TGG | 0.367620 | 5.4:+40837577 | None:intergenic |
| TCAACAATTTCGTCACCATT+AGG | 0.369734 | 5.4:-40838155 | MS.gene99230:CDS |
| TTGAATGTCGTGGGCTAGTT+CGG | 0.379478 | 5.4:+40836574 | None:intergenic |
| CAATTGGACCATTGGAGATA+AGG | 0.379586 | 5.4:-40835752 | MS.gene99230:CDS |
| AAGGAATAATCACAAGGATT+TGG | 0.385048 | 5.4:-40836430 | MS.gene99230:CDS |
| GGGCAGAGAATGGCTTCATT+TGG | 0.385806 | 5.4:+40836725 | None:intergenic |
| AATTGGACCATTGGAGATAA+GGG | 0.390905 | 5.4:-40835751 | MS.gene99230:CDS |
| AATTCAAAGTAGGCCATGTT+TGG | 0.394151 | 5.4:+40836227 | None:intergenic |
| GAATAGGTGTTGTTTGGAAA+TGG | 0.409700 | 5.4:-40835823 | MS.gene99230:CDS |
| TAAATTACCTTATCCTTTCA+GGG | 0.419629 | 5.4:+40835562 | None:intergenic |
| TGCAGTTCTGGTACTTCAGC+TGG | 0.420220 | 5.4:-40837616 | MS.gene99230:intron |
| GGTGTTGAATAGGTGTTGTT+TGG | 0.422522 | 5.4:-40835829 | MS.gene99230:CDS |
| GAAACTTACAGGTTCATAAC+TGG | 0.424623 | 5.4:+40837523 | None:intergenic |
| AGAATGCTCAAATGAAAATT+GGG | 0.430991 | 5.4:-40836453 | MS.gene99230:CDS |
| ATGGTTTGCACATTGGATTA+AGG | 0.431625 | 5.4:+40836273 | None:intergenic |
| CGAGTCATGAGGTGTTGAAT+AGG | 0.435910 | 5.4:-40835839 | MS.gene99230:CDS |
| ATTCTGTTTATAGGCAATGT+AGG | 0.437291 | 5.4:-40835788 | MS.gene99230:CDS |
| AGGGTTGCGGATCATTCAAT+TGG | 0.439629 | 5.4:-40835768 | MS.gene99230:CDS |
| CAAAGACAGCGCCGAGGCGG+AGG | 0.445835 | 5.4:+40836642 | None:intergenic |
| CTCGGCGCTGTCTTTGCCTC+TGG | 0.447709 | 5.4:-40836635 | MS.gene99230:CDS |
| AATGATGCCAATTTCGGGTC+GGG | 0.448903 | 5.4:+40836485 | None:intergenic |
| TACATGCTTTGGAATGAGTC+GGG | 0.450583 | 5.4:+40836704 | None:intergenic |
| TCACACGCAGGTGGACCTAA+TGG | 0.456335 | 5.4:+40838140 | None:intergenic |
| CACTCTTTCTTGAACGGCAT+CGG | 0.459349 | 5.4:+40838070 | None:intergenic |
| GGACTTGTGTAGACATTGTA+CGG | 0.459915 | 5.4:+40836746 | None:intergenic |
| AGGTCATTATGTGATATATT+GGG | 0.464196 | 5.4:-40835886 | MS.gene99230:CDS |
| TTGGCGATACGCTGTATCTC+TGG | 0.469797 | 5.4:+40837924 | None:intergenic |
| GGGTCCAATGTGGCAAATCT+TGG | 0.475897 | 5.4:+40835583 | None:intergenic |
| TTCCAACCTCCACCTCAGTA+AGG | 0.479383 | 5.4:+40836168 | None:intergenic |
| ATTGTACGGGTCAAAGGGTC+GGG | 0.481788 | 5.4:+40836760 | None:intergenic |
| GGTGACATTCTCCGTGTCAC+CGG | 0.482004 | 5.4:-40836092 | MS.gene99230:CDS |
| TTTGAATGTTTCACGGTCGA+TGG | 0.483063 | 5.4:+40837983 | None:intergenic |
| GAATGAGTCGGGGCAGAGAA+TGG | 0.483203 | 5.4:+40836715 | None:intergenic |
| GTGACATTCTCCGTGTCACC+GGG | 0.486229 | 5.4:-40836091 | MS.gene99230:CDS |
| TAGGTTCCTTCAGCTCAATT+GGG | 0.487597 | 5.4:-40836597 | MS.gene99230:CDS |
| CTATTCAACACCTCATGACT+CGG | 0.489683 | 5.4:+40835840 | None:intergenic |
| ACCTCAGATGGTTTGCACAT+TGG | 0.491763 | 5.4:+40836266 | None:intergenic |
| GCCAACAATTAAGGAAGAGT+TGG | 0.492449 | 5.4:-40837578 | MS.gene99230:CDS |
| CACTTAATTACTACAGTGGT+GGG | 0.494137 | 5.4:-40836349 | MS.gene99230:CDS |
| TTCTGTTTATAGGCAATGTA+GGG | 0.495131 | 5.4:-40835787 | MS.gene99230:CDS |
| TTCGATGAATCGAAGTGCCT+TGG | 0.498023 | 5.4:+40838109 | None:intergenic |
| AGGTCCCGGTTTGAATGTCG+TGG | 0.500373 | 5.4:+40836564 | None:intergenic |
| GTAGACATTGTACGGGTCAA+AGG | 0.501669 | 5.4:+40836754 | None:intergenic |
| ATTGGACCCCTGAAAGGATA+AGG | 0.508054 | 5.4:-40835569 | MS.gene99230:CDS |
| GGATCATTCAATTGGACCAT+TGG | 0.509299 | 5.4:-40835760 | MS.gene99230:CDS |
| CTAGCCCACGACATTCAAAC+CGG | 0.513627 | 5.4:-40836569 | MS.gene99230:CDS |
| GAGATAAGGGTTGTGAAGAG+TGG | 0.515628 | 5.4:-40835738 | MS.gene99230:CDS |
| AGGCAAAGACAGCGCCGAGG+CGG | 0.517086 | 5.4:+40836639 | None:intergenic |
| AACTCTGTAACGGTTCAATC+CGG | 0.517270 | 5.4:+40836115 | None:intergenic |
| CCAGGCTTGGACAAAGGAAA+AGG | 0.518296 | 5.4:-40836881 | MS.gene99230:CDS |
| CCTTGTTAGGAATTCAGAGA+TGG | 0.518359 | 5.4:+40837869 | None:intergenic |
| TGTCATTGTAACTGGTGCTA+TGG | 0.521896 | 5.4:-40836387 | MS.gene99230:CDS |
| TGTTGGCCTTACTGAGGTGG+AGG | 0.527008 | 5.4:-40836174 | MS.gene99230:CDS |
| GCAGACACGGAGACCATACC+AGG | 0.528391 | 5.4:-40835906 | MS.gene99230:CDS |
| GAACAGTTATGTACCAGGCT+TGG | 0.528851 | 5.4:-40836894 | MS.gene99230:intron |
| TATCACATAATGACCTGGTA+TGG | 0.530639 | 5.4:+40835893 | None:intergenic |
| AGCTAACACTCTTTCTTGAA+CGG | 0.533051 | 5.4:+40838064 | None:intergenic |
| TGTAGTAACTTGTGAGAACT+GGG | 0.533261 | 5.4:+40836801 | None:intergenic |
| AATTCCTACCTCACGAATCA+GGG | 0.533465 | 5.4:-40836208 | MS.gene99230:CDS |
| GGAGTAAAATTAACACACCT+TGG | 0.535014 | 5.4:+40835651 | None:intergenic |
| CGCAACCAAGTCCTCCGCCT+CGG | 0.536258 | 5.4:-40836653 | MS.gene99230:CDS |
| GGATTGAACCGTTACAGAGT+TGG | 0.542624 | 5.4:-40836113 | MS.gene99230:CDS |
| GACTTGTGTAGACATTGTAC+GGG | 0.543894 | 5.4:+40836747 | None:intergenic |
| AATTGGAGAGCGATCACCAT+TGG | 0.544899 | 5.4:+40837905 | None:intergenic |
| TCCAATGTGCAAACCATCTG+AGG | 0.551056 | 5.4:-40836267 | MS.gene99230:CDS |
| TAGACATTGTACGGGTCAAA+GGG | 0.552212 | 5.4:+40836755 | None:intergenic |
| GAATGGAACAGTTATGTACC+AGG | 0.552354 | 5.4:-40836899 | MS.gene99230:intron |
| TGAGAAGGCTGTATAGAAGC+TGG | 0.552464 | 5.4:+40837548 | None:intergenic |
| AACTGTTGGCCTTACTGAGG+TGG | 0.556999 | 5.4:-40836177 | MS.gene99230:CDS |
| TATTCAACACCTCATGACTC+GGG | 0.558089 | 5.4:+40835841 | None:intergenic |
| GTAAGGCCAACAGTTCTAGT+TGG | 0.562466 | 5.4:+40836185 | None:intergenic |
| CTTGTTAGGAATTCAGAGAT+GGG | 0.564594 | 5.4:+40837870 | None:intergenic |
| CATTGTACGGGTCAAAGGGT+CGG | 0.565800 | 5.4:+40836759 | None:intergenic |
| TCAGGGCCAACTAGAACTGT+TGG | 0.566536 | 5.4:-40836191 | MS.gene99230:CDS |
| TATGTACCAGGCTTGGACAA+AGG | 0.567681 | 5.4:-40836887 | MS.gene99230:CDS |
| ACATCATCGTACGTGATGAC+AGG | 0.568242 | 5.4:+40837951 | None:intergenic |
| ACACTTAATTACTACAGTGG+TGG | 0.569697 | 5.4:-40836350 | MS.gene99230:CDS |
| GTAGGCCATGTTTGGCATGA+TGG | 0.569951 | 5.4:+40836235 | None:intergenic |
| GGCCTTACTGAGGTGGAGGT+TGG | 0.571411 | 5.4:-40836170 | MS.gene99230:CDS |
| ATACATGCTTTGGAATGAGT+CGG | 0.571825 | 5.4:+40836703 | None:intergenic |
| GTTCGGCCCAATTGAGCTGA+AGG | 0.577120 | 5.4:+40836591 | None:intergenic |
| GTGAGGTAGGAATTCAAAGT+AGG | 0.577752 | 5.4:+40836217 | None:intergenic |
| CAATATATCACATAATGACC+TGG | 0.578248 | 5.4:+40835888 | None:intergenic |
| TTATAGGCAATGTAGGGTTG+CGG | 0.579521 | 5.4:-40835781 | MS.gene99230:CDS |
| TGCCACATTGGACCCCTGAA+AGG | 0.581160 | 5.4:-40835575 | MS.gene99230:CDS |
| GCTTCCTCAGAATGCTACTT+CGG | 0.581209 | 5.4:-40836302 | MS.gene99230:CDS |
| AAATGATGCCAATTTCGGGT+CGG | 0.583995 | 5.4:+40836484 | None:intergenic |
| TGCTCAAATGAAAATTGGGA+AGG | 0.585393 | 5.4:-40836449 | MS.gene99230:CDS |
| TTCACAACCCTTATCTCCAA+TGG | 0.585801 | 5.4:+40835744 | None:intergenic |
| GAGATACAGCGTATCGCCAA+TGG | 0.586175 | 5.4:-40837921 | MS.gene99230:CDS |
| GTAACTTGTGAGAACTGGGC+GGG | 0.588468 | 5.4:+40836805 | None:intergenic |
| CCACTGTAGTAATTAAGTGT+TGG | 0.589297 | 5.4:+40836353 | None:intergenic |
| TAAATCAATATAAAGTTCCA+AGG | 0.589347 | 5.4:-40835668 | MS.gene99230:CDS |
| TTGGCCCTGATTCGTGAGGT+AGG | 0.591553 | 5.4:+40836204 | None:intergenic |
| TTAGCCAAGATTTGCCACAT+TGG | 0.594038 | 5.4:-40835587 | MS.gene99230:CDS |
| GCGTCTTTGTCACACGCAGG+TGG | 0.596535 | 5.4:+40838131 | None:intergenic |
| TTGGCGTCTTTGTCACACGC+AGG | 0.597121 | 5.4:+40838128 | None:intergenic |
| GTAACGGTTCAATCCGGCGT+AGG | 0.597714 | 5.4:+40836121 | None:intergenic |
| GGTTCATAACTGGCATGAGA+AGG | 0.599092 | 5.4:+40837533 | None:intergenic |
| AAATTACCTTATCCTTTCAG+GGG | 0.599858 | 5.4:+40835563 | None:intergenic |
| CGACGCACAAAATGGAATTG+TGG | 0.600454 | 5.4:+40836053 | None:intergenic |
| AGTTATGAAACCCGGTGACA+CGG | 0.604464 | 5.4:+40836081 | None:intergenic |
| ATACACCATCATGCCAAACA+TGG | 0.605774 | 5.4:-40836240 | MS.gene99230:CDS |
| GGTCCCGGTTTGAATGTCGT+GGG | 0.606229 | 5.4:+40836565 | None:intergenic |
| CCATCTCTGAATTCCTAACA+AGG | 0.606610 | 5.4:-40837869 | MS.gene99230:intron |
| GCATACATAGTACATGAAAG+AGG | 0.609084 | 5.4:+40836323 | None:intergenic |
| ATGGATTATGCAATCTCAAG+AGG | 0.609927 | 5.4:-40835699 | MS.gene99230:CDS |
| GGGCGGGCCAATAAACCACC+TGG | 0.611629 | 5.4:+40836821 | None:intergenic |
| TGTGTTGCTTAGTATTGACT+CGG | 0.611775 | 5.4:-40836024 | MS.gene99230:CDS |
| TGTTTGTGAAGTCAGAAACA+AGG | 0.618361 | 5.4:-40836847 | MS.gene99230:CDS |
| CTAGTTGGCCCTGATTCGTG+AGG | 0.624881 | 5.4:+40836200 | None:intergenic |
| ATGTATACTCAAATGCTATG+TGG | 0.627170 | 5.4:-40836686 | MS.gene99230:CDS |
| AAGTCAGAAACAAGGACACC+AGG | 0.629086 | 5.4:-40836839 | MS.gene99230:CDS |
| AGCAGACTCCCCGAGTCATG+AGG | 0.629198 | 5.4:-40835850 | MS.gene99230:CDS |
| TGCGTGTGACAAAGACGCCA+AGG | 0.632461 | 5.4:-40838126 | MS.gene99230:CDS |
| ATCCTTTCAGGGGTCCAATG+TGG | 0.633793 | 5.4:+40835573 | None:intergenic |
| CCAACACTTAATTACTACAG+TGG | 0.642475 | 5.4:-40836353 | MS.gene99230:CDS |
| GAATGTCACCAACTCTGTAA+CGG | 0.642994 | 5.4:+40836105 | None:intergenic |
| GCTGAAGGAACCTAATTGCA+CGG | 0.646007 | 5.4:+40836606 | None:intergenic |
| CAGAGGCAAAGACAGCGCCG+AGG | 0.652151 | 5.4:+40836636 | None:intergenic |
| AAGTCCGAAGTAGCATTCTG+AGG | 0.652236 | 5.4:+40836298 | None:intergenic |
| TTCTGAGTTTAACACGAGTG+TGG | 0.662200 | 5.4:-40835946 | MS.gene99230:CDS |
| ACATGCTTTGGAATGAGTCG+GGG | 0.673461 | 5.4:+40836705 | None:intergenic |
| CTTGTGATCACAACCTACGC+CGG | 0.686723 | 5.4:-40836134 | MS.gene99230:CDS |
| TAGCCCACGACATTCAAACC+GGG | 0.688554 | 5.4:-40836568 | MS.gene99230:CDS |
| ATGGTGTATGAAACCTCAGA+TGG | 0.689410 | 5.4:+40836254 | None:intergenic |
| TAGAACTGTTGGCCTTACTG+AGG | 0.692044 | 5.4:-40836180 | MS.gene99230:CDS |
| ATTGGGAAGGAATAATCACA+AGG | 0.697048 | 5.4:-40836436 | MS.gene99230:CDS |
| ATTCAACACCTCATGACTCG+GGG | 0.699615 | 5.4:+40835842 | None:intergenic |
| TGGTGCTGAGTTATGAAACC+CGG | 0.702188 | 5.4:+40836073 | None:intergenic |
| GTACACGAGTTATGCAGACA+CGG | 0.716614 | 5.4:-40835919 | MS.gene99230:CDS |
| TCAGAAACAAGGACACCAGG+TGG | 0.735786 | 5.4:-40836836 | MS.gene99230:CDS |
| AATTGCACGGAGAAGACCAG+AGG | 0.736919 | 5.4:+40836619 | None:intergenic |
| AGTAACTTGTGAGAACTGGG+CGG | 0.746811 | 5.4:+40836804 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTATTTTTTTAAATT+GGG | - | chr5.4:40836082-40836101 | MS.gene99230:CDS | 0.0% |
| !!! | TATTAATTATTTTTTTAAAT+TGG | - | chr5.4:40836081-40836100 | MS.gene99230:CDS | 0.0% |
| !! | AAAATTTAATATACTAGTAA+TGG | + | chr5.4:40836596-40836615 | None:intergenic | 10.0% |
| !!! | GTACATTTTTATTTTTTTTT+AGG | - | chr5.4:40836489-40836508 | MS.gene99230:CDS | 10.0% |
| !!! | TTATTGTTATTTTTTTTTGA+AGG | - | chr5.4:40836392-40836411 | MS.gene99230:CDS | 10.0% |
| !! | ACGAAAAAAAAGAAAAAATT+GGG | + | chr5.4:40835892-40835911 | None:intergenic | 15.0% |
| !! | ACTAAACAAAAGAAAAAAAT+TGG | + | chr5.4:40835975-40835994 | None:intergenic | 15.0% |
| !!! | TAGAGTTTTTTATTTATAAC+TGG | - | chr5.4:40836356-40836375 | MS.gene99230:CDS | 15.0% |
| !!! | TTGTTTATACTTTAGAAATA+TGG | + | chr5.4:40836727-40836746 | None:intergenic | 15.0% |
| !! | CACGAAAAAAAAGAAAAAAT+TGG | + | chr5.4:40835893-40835912 | None:intergenic | 20.0% |
| !! | GGAAATTATTGTAACAAAAA+CGG | - | chr5.4:40836413-40836432 | MS.gene99230:CDS | 20.0% |
| !! | TAAATCAATATAAAGTTCCA+AGG | - | chr5.4:40838065-40838084 | MS.gene99230:CDS | 20.0% |
| !! | TACAATGACATCTAAATATT+TGG | + | chr5.4:40837336-40837355 | None:intergenic | 20.0% |
| !! | TTATAGAGATAAAATAACGT+CGG | + | chr5.4:40836658-40836677 | None:intergenic | 20.0% |
| !! | TTATCCTAATAAATAGTTGA+AGG | + | chr5.4:40836309-40836328 | None:intergenic | 20.0% |
| !!! | AAAAGGGTTATTATTTTGAA+TGG | - | chr5.4:40836817-40836836 | MS.gene99230:CDS | 20.0% |
| !!! | CAATTTTTTCTTTTTTTTCG+TGG | - | chr5.4:40835891-40835910 | MS.gene99230:CDS | 20.0% |
| !!! | CGTTATTTTATCTCTATAAA+AGG | - | chr5.4:40836659-40836678 | MS.gene99230:CDS | 20.0% |
| !!! | TCATGTGATCTTTTATATTT+TGG | + | chr5.4:40837214-40837233 | None:intergenic | 20.0% |
| !!! | TGTTAATTTTACTCCTATAA+TGG | - | chr5.4:40838090-40838109 | MS.gene99230:CDS | 20.0% |
| !!! | TTTTAAAAAAGGAAGATCAA+AGG | - | chr5.4:40836631-40836650 | MS.gene99230:CDS | 20.0% |
| ! | AAACACATTAATTAAGCACA+TGG | + | chr5.4:40836267-40836286 | None:intergenic | 25.0% |
| ! | AAGAATGCTCAAATGAAAAT+TGG | - | chr5.4:40837279-40837298 | MS.gene99230:intron | 25.0% |
| ! | AATCGTTGAATTCTGTTTAT+AGG | - | chr5.4:40837936-40837955 | MS.gene99230:CDS | 25.0% |
| ! | AGAATGCTCAAATGAAAATT+GGG | - | chr5.4:40837280-40837299 | MS.gene99230:intron | 25.0% |
| ! | AGGTCATTATGTGATATATT+GGG | - | chr5.4:40837847-40837866 | MS.gene99230:intron | 25.0% |
| ! | ATTTGAAAGATGAAACTTAC+AGG | + | chr5.4:40836224-40836243 | None:intergenic | 25.0% |
| ! | GAAACCTTCAACTATTTATT+AGG | - | chr5.4:40836302-40836321 | MS.gene99230:CDS | 25.0% |
| ! | TATAGAGATAAAATAACGTC+GGG | + | chr5.4:40836657-40836676 | None:intergenic | 25.0% |
| ! | TATTTAGATGTCATTGTAAC+TGG | - | chr5.4:40837338-40837357 | MS.gene99230:intron | 25.0% |
| !!! | ACATCTAAATATTTGGTGTT+AGG | + | chr5.4:40837329-40837348 | None:intergenic | 25.0% |
| !!! | ATATTTTGGTCAGTGATTTT+AGG | + | chr5.4:40837200-40837219 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTTGAATGTTTCA+CGG | + | chr5.4:40835760-40835779 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTAGTCGTTAAT+TGG | - | chr5.4:40835982-40836001 | MS.gene99230:CDS | 25.0% |
| !!! | TTTTTTCTTTTTTTTCGTGG+TGG | - | chr5.4:40835894-40835913 | MS.gene99230:CDS | 25.0% |
| AAAAAATTGGGTACCTTGTT+AGG | + | chr5.4:40835880-40835899 | None:intergenic | 30.0% | |
| AAAACTGATGCCAACAATTA+AGG | - | chr5.4:40836146-40836165 | MS.gene99230:CDS | 30.0% | |
| AAGGAATAATCACAAGGATT+TGG | - | chr5.4:40837303-40837322 | MS.gene99230:intron | 30.0% | |
| ACCATAAATGATGCCAATTT+CGG | + | chr5.4:40837257-40837276 | None:intergenic | 30.0% | |
| ATGTATACTCAAATGCTATG+TGG | - | chr5.4:40837047-40837066 | MS.gene99230:intron | 30.0% | |
| ATTCTGTTTATAGGCAATGT+AGG | - | chr5.4:40837945-40837964 | MS.gene99230:CDS | 30.0% | |
| ATTTGTGCTAAGTGCTAAAA+AGG | - | chr5.4:40836800-40836819 | MS.gene99230:CDS | 30.0% | |
| CAATATATCACATAATGACC+TGG | + | chr5.4:40837848-40837867 | None:intergenic | 30.0% | |
| CAGGTCATTATGTGATATAT+TGG | - | chr5.4:40837846-40837865 | MS.gene99230:intron | 30.0% | |
| CTTAAACGCTTCAAACTTAA+CGG | - | chr5.4:40835725-40835744 | MS.gene99230:CDS | 30.0% | |
| TTCTGTTTATAGGCAATGTA+GGG | - | chr5.4:40837946-40837965 | MS.gene99230:CDS | 30.0% | |
| TTTGTGCTAAGTGCTAAAAA+GGG | - | chr5.4:40836801-40836820 | MS.gene99230:CDS | 30.0% | |
| ! | TTGGTAGTATATGAAAGGTT+GGG | + | chr5.4:40835931-40835950 | None:intergenic | 30.0% |
| !!! | GTCAGTGATTTTAGGATTTA+AGG | + | chr5.4:40837192-40837211 | None:intergenic | 30.0% |
| AACTCTTGAATTTGCAGTTC+TGG | - | chr5.4:40836105-40836124 | MS.gene99230:CDS | 35.0% | |
| AATTCAAAGTAGGCCATGTT+TGG | + | chr5.4:40837509-40837528 | None:intergenic | 35.0% | |
| AATTGGACCATTGGAGATAA+GGG | - | chr5.4:40837982-40838001 | MS.gene99230:CDS | 35.0% | |
| ACACTTAATTACTACAGTGG+TGG | - | chr5.4:40837383-40837402 | MS.gene99230:intron | 35.0% | |
| ACCTTTCATATACTACCAAC+TGG | - | chr5.4:40835932-40835951 | MS.gene99230:CDS | 35.0% | |
| AGCTAACACTCTTTCTTGAA+CGG | + | chr5.4:40835672-40835691 | None:intergenic | 35.0% | |
| ATTGGGAAGGAATAATCACA+AGG | - | chr5.4:40837297-40837316 | MS.gene99230:intron | 35.0% | |
| CACTTAATTACTACAGTGGT+GGG | - | chr5.4:40837384-40837403 | MS.gene99230:intron | 35.0% | |
| CCAACACTTAATTACTACAG+TGG | - | chr5.4:40837380-40837399 | MS.gene99230:intron | 35.0% | |
| CCACTGTAGTAATTAAGTGT+TGG | + | chr5.4:40837383-40837402 | None:intergenic | 35.0% | |
| CCATAAATGATGCCAATTTC+GGG | + | chr5.4:40837256-40837275 | None:intergenic | 35.0% | |
| CTTGTTAGGAATTCAGAGAT+GGG | + | chr5.4:40835866-40835885 | None:intergenic | 35.0% | |
| GAAACTTACAGGTTCATAAC+TGG | + | chr5.4:40836213-40836232 | None:intergenic | 35.0% | |
| GCATACATAGTACATGAAAG+AGG | + | chr5.4:40837413-40837432 | None:intergenic | 35.0% | |
| GCATTTGAGTATACATGCTT+TGG | + | chr5.4:40837043-40837062 | None:intergenic | 35.0% | |
| GGAGTAAAATTAACACACCT+TGG | + | chr5.4:40838085-40838104 | None:intergenic | 35.0% | |
| TATCACATAATGACCTGGTA+TGG | + | chr5.4:40837843-40837862 | None:intergenic | 35.0% | |
| TCAACAATTTCGTCACCATT+AGG | - | chr5.4:40835578-40835597 | MS.gene99230:CDS | 35.0% | |
| TCCAACTCTTCCTTAATTGT+TGG | + | chr5.4:40836159-40836178 | None:intergenic | 35.0% | |
| TGCTCAAATGAAAATTGGGA+AGG | - | chr5.4:40837284-40837303 | MS.gene99230:intron | 35.0% | |
| TGTTTGTGAAGTCAGAAACA+AGG | - | chr5.4:40836886-40836905 | MS.gene99230:CDS | 35.0% | |
| ! | ATGGATTATGCAATCTCAAG+AGG | - | chr5.4:40838034-40838053 | MS.gene99230:CDS | 35.0% |
| ! | ATGGTTTGCACATTGGATTA+AGG | + | chr5.4:40837463-40837482 | None:intergenic | 35.0% |
| ! | CGTTAAGTTTGAAGCGTTTA+AGG | + | chr5.4:40835727-40835746 | None:intergenic | 35.0% |
| ! | TGTAGTAACTTGTGAGAACT+GGG | + | chr5.4:40836935-40836954 | None:intergenic | 35.0% |
| ! | TTGTAGTAACTTGTGAGAAC+TGG | + | chr5.4:40836936-40836955 | None:intergenic | 35.0% |
| !! | ATACATGCTTTGGAATGAGT+CGG | + | chr5.4:40837033-40837052 | None:intergenic | 35.0% |
| !! | GAATAGGTGTTGTTTGGAAA+TGG | - | chr5.4:40837910-40837929 | MS.gene99230:CDS | 35.0% |
| !! | GTTGGTAGTATATGAAAGGT+TGG | + | chr5.4:40835932-40835951 | None:intergenic | 35.0% |
| !! | TACTCCTATAATGGAGCTTT+TGG | - | chr5.4:40838099-40838118 | MS.gene99230:CDS | 35.0% |
| !! | TCCAGTTGGTAGTATATGAA+AGG | + | chr5.4:40835936-40835955 | None:intergenic | 35.0% |
| !! | TGTGTTGCTTAGTATTGACT+CGG | - | chr5.4:40837709-40837728 | MS.gene99230:intron | 35.0% |
| !!! | GATTTTAGGATTTAAGGTCC+CGG | + | chr5.4:40837186-40837205 | None:intergenic | 35.0% |
| !!! | TTCTTTTTTTTCGTGGTGGT+GGG | - | chr5.4:40835898-40835917 | MS.gene99230:CDS | 35.0% |
| !!! | TTTCTTTTTTTTCGTGGTGG+TGG | - | chr5.4:40835897-40835916 | MS.gene99230:CDS | 35.0% |
| AACTCTGTAACGGTTCAATC+CGG | + | chr5.4:40837621-40837640 | None:intergenic | 40.0% | |
| AATTCCTACCTCACGAATCA+GGG | - | chr5.4:40837525-40837544 | MS.gene99230:intron | 40.0% | |
| ATACACCATCATGCCAAACA+TGG | - | chr5.4:40837493-40837512 | MS.gene99230:intron | 40.0% | |
| ATGGTGTATGAAACCTCAGA+TGG | + | chr5.4:40837482-40837501 | None:intergenic | 40.0% | |
| CAATTGGACCATTGGAGATA+AGG | - | chr5.4:40837981-40838000 | MS.gene99230:CDS | 40.0% | |
| CATTCTTTCGACGCACAAAA+TGG | + | chr5.4:40837691-40837710 | None:intergenic | 40.0% | |
| CCATCTCTGAATTCCTAACA+AGG | - | chr5.4:40835864-40835883 | MS.gene99230:CDS | 40.0% | |
| CCCGAAATTGGCATCATTTA+TGG | - | chr5.4:40837253-40837272 | MS.gene99230:intron | 40.0% | |
| CCTTGTTAGGAATTCAGAGA+TGG | + | chr5.4:40835867-40835886 | None:intergenic | 40.0% | |
| CTATTCAACACCTCATGACT+CGG | + | chr5.4:40837896-40837915 | None:intergenic | 40.0% | |
| GAATGGAACAGTTATGTACC+AGG | - | chr5.4:40836834-40836853 | MS.gene99230:CDS | 40.0% | |
| GAATGTCACCAACTCTGTAA+CGG | + | chr5.4:40837631-40837650 | None:intergenic | 40.0% | |
| GACTTGTGTAGACATTGTAC+GGG | + | chr5.4:40836989-40837008 | None:intergenic | 40.0% | |
| GAGTCCAAAAGCTCCATTAT+AGG | + | chr5.4:40838106-40838125 | None:intergenic | 40.0% | |
| GCCAACAATTAAGGAAGAGT+TGG | - | chr5.4:40836155-40836174 | MS.gene99230:CDS | 40.0% | |
| GGACTTGTGTAGACATTGTA+CGG | + | chr5.4:40836990-40837009 | None:intergenic | 40.0% | |
| GGATCATTCAATTGGACCAT+TGG | - | chr5.4:40837973-40837992 | MS.gene99230:CDS | 40.0% | |
| GTGAGGTAGGAATTCAAAGT+AGG | + | chr5.4:40837519-40837538 | None:intergenic | 40.0% | |
| TAGACATTGTACGGGTCAAA+GGG | + | chr5.4:40836981-40837000 | None:intergenic | 40.0% | |
| TAGGTTCCTTCAGCTCAATT+GGG | - | chr5.4:40837136-40837155 | MS.gene99230:intron | 40.0% | |
| TATTCAACACCTCATGACTC+GGG | + | chr5.4:40837895-40837914 | None:intergenic | 40.0% | |
| TTAGCCAAGATTTGCCACAT+TGG | - | chr5.4:40838146-40838165 | MS.gene99230:CDS | 40.0% | |
| TTAGGTTCCTTCAGCTCAAT+TGG | - | chr5.4:40837135-40837154 | MS.gene99230:intron | 40.0% | |
| TTATAGGCAATGTAGGGTTG+CGG | - | chr5.4:40837952-40837971 | MS.gene99230:CDS | 40.0% | |
| TTCACAACCCTTATCTCCAA+TGG | + | chr5.4:40837992-40838011 | None:intergenic | 40.0% | |
| TTCTGAGTTTAACACGAGTG+TGG | - | chr5.4:40837787-40837806 | MS.gene99230:intron | 40.0% | |
| TTTGAATGTTTCACGGTCGA+TGG | + | chr5.4:40835753-40835772 | None:intergenic | 40.0% | |
| ! | AAATGATGCCAATTTCGGGT+CGG | + | chr5.4:40837252-40837271 | None:intergenic | 40.0% |
| ! | AATGGAGCTTTTGGACTCTA+GGG | - | chr5.4:40838108-40838127 | MS.gene99230:CDS | 40.0% |
| ! | TAATGGAGCTTTTGGACTCT+AGG | - | chr5.4:40838107-40838126 | MS.gene99230:CDS | 40.0% |
| ! | TGTCATTGTAACTGGTGCTA+TGG | - | chr5.4:40837346-40837365 | MS.gene99230:intron | 40.0% |
| ! | TGTGAAGAGTGGAACTTTTG+AGG | - | chr5.4:40838006-40838025 | MS.gene99230:CDS | 40.0% |
| !! | GGTGTTGAATAGGTGTTGTT+TGG | - | chr5.4:40837904-40837923 | MS.gene99230:CDS | 40.0% |
| !! | TACATGCTTTGGAATGAGTC+GGG | + | chr5.4:40837032-40837051 | None:intergenic | 40.0% |
| !! | TGGAACTTTTGAGGAGCTTA+TGG | - | chr5.4:40838015-40838034 | MS.gene99230:CDS | 40.0% |
| !!! | TCTTTTTTTTCGTGGTGGTG+GGG | - | chr5.4:40835899-40835918 | MS.gene99230:CDS | 40.0% |
| AAGGACACCAGGTGGTTTAT+TGG | - | chr5.4:40836905-40836924 | MS.gene99230:intron | 45.0% | |
| AAGTCAGAAACAAGGACACC+AGG | - | chr5.4:40836894-40836913 | MS.gene99230:intron | 45.0% | |
| AAGTCCGAAGTAGCATTCTG+AGG | + | chr5.4:40837438-40837457 | None:intergenic | 45.0% | |
| AATTGGAGAGCGATCACCAT+TGG | + | chr5.4:40835831-40835850 | None:intergenic | 45.0% | |
| ACATCATCGTACGTGATGAC+AGG | + | chr5.4:40835785-40835804 | None:intergenic | 45.0% | |
| AGGGTTGCGGATCATTCAAT+TGG | - | chr5.4:40837965-40837984 | MS.gene99230:CDS | 45.0% | |
| AGTTATGAAACCCGGTGACA+CGG | + | chr5.4:40837655-40837674 | None:intergenic | 45.0% | |
| ATGGGATGAGCAGAGAGAAT+TGG | + | chr5.4:40835848-40835867 | None:intergenic | 45.0% | |
| ATTCAACACCTCATGACTCG+GGG | + | chr5.4:40837894-40837913 | None:intergenic | 45.0% | |
| ATTGGACCCCTGAAAGGATA+AGG | - | chr5.4:40838164-40838183 | MS.gene99230:CDS | 45.0% | |
| CACTCTTTCTTGAACGGCAT+CGG | + | chr5.4:40835666-40835685 | None:intergenic | 45.0% | |
| CGACGCACAAAATGGAATTG+TGG | + | chr5.4:40837683-40837702 | None:intergenic | 45.0% | |
| GAACAGTTATGTACCAGGCT+TGG | - | chr5.4:40836839-40836858 | MS.gene99230:CDS | 45.0% | |
| GAATTCCTACCTCACGAATC+AGG | - | chr5.4:40837524-40837543 | MS.gene99230:intron | 45.0% | |
| GAGATAAGGGTTGTGAAGAG+TGG | - | chr5.4:40837995-40838014 | MS.gene99230:CDS | 45.0% | |
| GCTGAAGGAACCTAATTGCA+CGG | + | chr5.4:40837130-40837149 | None:intergenic | 45.0% | |
| GGATTGAACCGTTACAGAGT+TGG | - | chr5.4:40837620-40837639 | MS.gene99230:intron | 45.0% | |
| GGTTCATAACTGGCATGAGA+AGG | + | chr5.4:40836203-40836222 | None:intergenic | 45.0% | |
| GTACACGAGTTATGCAGACA+CGG | - | chr5.4:40837814-40837833 | MS.gene99230:intron | 45.0% | |
| GTAGACATTGTACGGGTCAA+AGG | + | chr5.4:40836982-40837001 | None:intergenic | 45.0% | |
| GTCAGAGCTACAAAAAGCAG+TGG | - | chr5.4:40837745-40837764 | MS.gene99230:intron | 45.0% | |
| TATCAAACCCGACCCGAAAT+TGG | - | chr5.4:40837241-40837260 | MS.gene99230:intron | 45.0% | |
| TATGTACCAGGCTTGGACAA+AGG | - | chr5.4:40836846-40836865 | MS.gene99230:CDS | 45.0% | |
| TCCAATGTGCAAACCATCTG+AGG | - | chr5.4:40837466-40837485 | MS.gene99230:intron | 45.0% | |
| TGAGAAGGCTGTATAGAAGC+TGG | + | chr5.4:40836188-40836207 | None:intergenic | 45.0% | |
| ! | AATGATGCCAATTTCGGGTC+GGG | + | chr5.4:40837251-40837270 | None:intergenic | 45.0% |
| ! | ACCTCAGATGGTTTGCACAT+TGG | + | chr5.4:40837470-40837489 | None:intergenic | 45.0% |
| ! | AGTAACTTGTGAGAACTGGG+CGG | + | chr5.4:40836932-40836951 | None:intergenic | 45.0% |
| ! | GCTTCCTCAGAATGCTACTT+CGG | - | chr5.4:40837431-40837450 | MS.gene99230:intron | 45.0% |
| ! | GTAAGGCCAACAGTTCTAGT+TGG | + | chr5.4:40837551-40837570 | None:intergenic | 45.0% |
| ! | TGGTGCTGAGTTATGAAACC+CGG | + | chr5.4:40837663-40837682 | None:intergenic | 45.0% |
| ! | TTCGATGAATCGAAGTGCCT+TGG | + | chr5.4:40835627-40835646 | None:intergenic | 45.0% |
| !! | ACATGCTTTGGAATGAGTCG+GGG | + | chr5.4:40837031-40837050 | None:intergenic | 45.0% |
| !! | CGAGTCATGAGGTGTTGAAT+AGG | - | chr5.4:40837894-40837913 | MS.gene99230:CDS | 45.0% |
| !! | TAGAACTGTTGGCCTTACTG+AGG | - | chr5.4:40837553-40837572 | MS.gene99230:CDS | 45.0% |
| !! | TTGAATGTCGTGGGCTAGTT+CGG | + | chr5.4:40837162-40837181 | None:intergenic | 45.0% |
| !! | TATATATAAAAATAAAAAGT+AGG | + | chr5.4:40836037-40836056 | None:intergenic | 5.0% |
| !!! | TCATTTTTTTTTTTTAAAAA+AGG | - | chr5.4:40836620-40836639 | MS.gene99230:CDS | 5.0% |
| !!! | TTATATATAATATTTTTAGA+TGG | - | chr5.4:40836048-40836067 | MS.gene99230:CDS | 5.0% |
| AATTGCACGGAGAAGACCAG+AGG | + | chr5.4:40837117-40837136 | None:intergenic | 50.0% | |
| ATCCTTTCAGGGGTCCAATG+TGG | + | chr5.4:40838163-40838182 | None:intergenic | 50.0% | |
| ATTGTACGGGTCAAAGGGTC+GGG | + | chr5.4:40836976-40836995 | None:intergenic | 50.0% | |
| CATTGTACGGGTCAAAGGGT+CGG | + | chr5.4:40836977-40836996 | None:intergenic | 50.0% | |
| CCAGGCTTGGACAAAGGAAA+AGG | - | chr5.4:40836852-40836871 | MS.gene99230:CDS | 50.0% | |
| CTAGCCCACGACATTCAAAC+CGG | - | chr5.4:40837164-40837183 | MS.gene99230:intron | 50.0% | |
| CTTGTGATCACAACCTACGC+CGG | - | chr5.4:40837599-40837618 | MS.gene99230:CDS | 50.0% | |
| GAGATACAGCGTATCGCCAA+TGG | - | chr5.4:40835812-40835831 | MS.gene99230:CDS | 50.0% | |
| GGGCAGAGAATGGCTTCATT+TGG | + | chr5.4:40837011-40837030 | None:intergenic | 50.0% | |
| GGGTCCAATGTGGCAAATCT+TGG | + | chr5.4:40838153-40838172 | None:intergenic | 50.0% | |
| GTAGGCCATGTTTGGCATGA+TGG | + | chr5.4:40837501-40837520 | None:intergenic | 50.0% | |
| TAGCCCACGACATTCAAACC+GGG | - | chr5.4:40837165-40837184 | MS.gene99230:intron | 50.0% | |
| TCAGAAACAAGGACACCAGG+TGG | - | chr5.4:40836897-40836916 | MS.gene99230:intron | 50.0% | |
| TCAGGGCCAACTAGAACTGT+TGG | - | chr5.4:40837542-40837561 | MS.gene99230:CDS | 50.0% | |
| TTCCAACCTCCACCTCAGTA+AGG | + | chr5.4:40837568-40837587 | None:intergenic | 50.0% | |
| TTGGCGATACGCTGTATCTC+TGG | + | chr5.4:40835812-40835831 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTTTGTCCAAGCC+TGG | + | chr5.4:40836855-40836874 | None:intergenic | 50.0% |
| ! | CTGGTCTTCTCCGTGCAATT+AGG | - | chr5.4:40837117-40837136 | MS.gene99230:intron | 50.0% |
| ! | GTAACTTGTGAGAACTGGGC+GGG | + | chr5.4:40836931-40836950 | None:intergenic | 50.0% |
| ! | TGCAGTTCTGGTACTTCAGC+TGG | - | chr5.4:40836117-40836136 | MS.gene99230:CDS | 50.0% |
| !! | AACTGTTGGCCTTACTGAGG+TGG | - | chr5.4:40837556-40837575 | MS.gene99230:CDS | 50.0% |
| GAATGAGTCGGGGCAGAGAA+TGG | + | chr5.4:40837021-40837040 | None:intergenic | 55.0% | |
| GGTGACATTCTCCGTGTCAC+CGG | - | chr5.4:40837641-40837660 | MS.gene99230:intron | 55.0% | |
| GTAACGGTTCAATCCGGCGT+AGG | + | chr5.4:40837615-40837634 | None:intergenic | 55.0% | |
| GTGACATTCTCCGTGTCACC+GGG | - | chr5.4:40837642-40837661 | MS.gene99230:intron | 55.0% | |
| GTTCGGCCCAATTGAGCTGA+AGG | + | chr5.4:40837145-40837164 | None:intergenic | 55.0% | |
| TCACACGCAGGTGGACCTAA+TGG | + | chr5.4:40835596-40835615 | None:intergenic | 55.0% | |
| TGCCACATTGGACCCCTGAA+AGG | - | chr5.4:40838158-40838177 | MS.gene99230:CDS | 55.0% | |
| TGCGTGTGACAAAGACGCCA+AGG | - | chr5.4:40835607-40835626 | MS.gene99230:CDS | 55.0% | |
| TTGGCGTCTTTGTCACACGC+AGG | + | chr5.4:40835608-40835627 | None:intergenic | 55.0% | |
| ! | AGGTCCCGGTTTGAATGTCG+TGG | + | chr5.4:40837172-40837191 | None:intergenic | 55.0% |
| ! | CTAGTTGGCCCTGATTCGTG+AGG | + | chr5.4:40837536-40837555 | None:intergenic | 55.0% |
| ! | GGTCCCGGTTTGAATGTCGT+GGG | + | chr5.4:40837171-40837190 | None:intergenic | 55.0% |
| ! | TTGGCCCTGATTCGTGAGGT+AGG | + | chr5.4:40837532-40837551 | None:intergenic | 55.0% |
| !! | GGAGCTTTTGGACTCTAGGG+TGG | - | chr5.4:40838111-40838130 | MS.gene99230:CDS | 55.0% |
| !! | TGTTGGCCTTACTGAGGTGG+AGG | - | chr5.4:40837559-40837578 | MS.gene99230:CDS | 55.0% |
| AGCAGACTCCCCGAGTCATG+AGG | - | chr5.4:40837883-40837902 | MS.gene99230:CDS | 60.0% | |
| CAACTGGAGCTAAGCTCGCG+AGG | - | chr5.4:40835948-40835967 | MS.gene99230:CDS | 60.0% | |
| CTCGCGAGCTTAGCTCCAGT+TGG | + | chr5.4:40835950-40835969 | None:intergenic | 60.0% | |
| GCAGACACGGAGACCATACC+AGG | - | chr5.4:40837827-40837846 | MS.gene99230:intron | 60.0% | |
| GCGTCTTTGTCACACGCAGG+TGG | + | chr5.4:40835605-40835624 | None:intergenic | 60.0% | |
| GGCCTTACTGAGGTGGAGGT+TGG | - | chr5.4:40837563-40837582 | MS.gene99230:CDS | 60.0% | |
| CAGAGGCAAAGACAGCGCCG+AGG | + | chr5.4:40837100-40837119 | None:intergenic | 65.0% | |
| CGCAACCAAGTCCTCCGCCT+CGG | - | chr5.4:40837080-40837099 | MS.gene99230:intron | 65.0% | |
| CTCGGCGCTGTCTTTGCCTC+TGG | - | chr5.4:40837098-40837117 | MS.gene99230:intron | 65.0% | |
| GGGCGGGCCAATAAACCACC+TGG | + | chr5.4:40836915-40836934 | None:intergenic | 65.0% | |
| ! | AGGCAAAGACAGCGCCGAGG+CGG | + | chr5.4:40837097-40837116 | None:intergenic | 65.0% |
| ! | CAAAGACAGCGCCGAGGCGG+AGG | + | chr5.4:40837094-40837113 | None:intergenic | 70.0% |
| ! | CAGCGCCGAGGCGGAGGACT+TGG | + | chr5.4:40837088-40837107 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 40835566 | 40838189 | 40835566 | ID=MS.gene99230 |
| chr5.4 | mRNA | 40835566 | 40838189 | 40835566 | ID=MS.gene99230.t1;Parent=MS.gene99230 |
| chr5.4 | exon | 40837870 | 40838189 | 40837870 | ID=MS.gene99230.t1.exon1;Parent=MS.gene99230.t1 |
| chr5.4 | CDS | 40837870 | 40838189 | 40837870 | ID=cds.MS.gene99230.t1;Parent=MS.gene99230.t1 |
| chr5.4 | exon | 40837532 | 40837633 | 40837532 | ID=MS.gene99230.t1.exon2;Parent=MS.gene99230.t1 |
| chr5.4 | CDS | 40837532 | 40837633 | 40837532 | ID=cds.MS.gene99230.t1;Parent=MS.gene99230.t1 |
| chr5.4 | exon | 40835566 | 40836910 | 40835566 | ID=MS.gene99230.t1.exon3;Parent=MS.gene99230.t1 |
| chr5.4 | CDS | 40835566 | 40836910 | 40835566 | ID=cds.MS.gene99230.t1;Parent=MS.gene99230.t1 |
| Gene Sequence |
| Protein sequence |
