AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78774

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78774.t1 MTR_0035s0150 98.469 588 9 0 1 588 1 588 0.0 1207
MS.gene78774.t1 MTR_5g016320 77.409 602 120 4 1 588 1 600 0.0 956
MS.gene78774.t1 MTR_8g467000 64.141 594 195 2 9 584 4 597 0.0 809
MS.gene78774.t1 MTR_4g045903 62.607 583 198 5 17 584 27 604 0.0 761
MS.gene78774.t1 MTR_2g081860 61.224 588 207 3 18 584 12 599 0.0 759
MS.gene78774.t1 MTR_1g088765 52.951 593 248 7 18 584 9 596 0.0 622
MS.gene78774.t1 MTR_1g088765 53.319 452 192 5 152 584 1 452 8.74e-167 483
MS.gene78774.t1 MTR_7g117110 39.367 569 327 8 21 576 12 575 6.29e-137 411
MS.gene78774.t1 MTR_8g027970 38.761 565 332 7 21 576 12 571 4.14e-136 409
MS.gene78774.t1 MTR_8g027920 37.925 559 333 8 27 576 18 571 3.04e-135 407
MS.gene78774.t1 MTR_8g027965 37.943 564 338 6 21 576 12 571 8.04e-135 405
MS.gene78774.t1 MTR_8g027955 37.876 565 337 8 21 576 19 578 5.07e-134 404
MS.gene78774.t1 MTR_0102s0060 33.158 570 357 4 23 571 22 588 1.17e-120 370
MS.gene78774.t1 MTR_7g094190 31.414 573 362 12 19 567 4 569 6.84e-86 279
MS.gene78774.t1 MTR_7g117110 37.179 390 234 4 21 400 12 400 5.28e-81 261
MS.gene78774.t1 MTR_7g094190 31.910 445 278 9 141 567 32 469 4.15e-68 229
MS.gene78774.t1 MTR_8g037720 36.335 322 166 7 268 576 136 431 2.82e-62 212
MS.gene78774.t1 MTR_8g037720 41.414 99 55 1 24 119 3 101 2.79e-16 82.0
MS.gene78774.t1 MTR_1g047730 42.205 263 125 6 326 576 111 358 5.25e-62 209
MS.gene78774.t1 MTR_7g094330 30.576 278 150 7 141 408 32 276 4.41e-32 125
MS.gene78774.t1 MTR_3g023280 51.376 109 50 1 479 584 19 127 1.07e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78774.t1 AT2G14960 82.264 592 100 3 1 589 1 590 0.0 1016
MS.gene78774.t1 AT4G37390 76.783 603 125 4 1 588 1 603 0.0 954
MS.gene78774.t1 AT2G23170 77.983 595 124 4 1 588 1 595 0.0 952
MS.gene78774.t1 AT1G59500 72.864 597 149 5 1 586 1 595 0.0 900
MS.gene78774.t1 AT5G54510 66.553 586 178 3 17 584 19 604 0.0 822
MS.gene78774.t1 AT4G27260 65.812 585 182 3 18 584 20 604 0.0 810
MS.gene78774.t1 AT1G28130 56.155 593 229 8 22 584 13 604 0.0 685
MS.gene78774.t1 AT2G47750 50.940 585 264 8 17 584 7 585 0.0 597
MS.gene78774.t1 AT1G23160 50.000 570 274 5 17 576 9 577 0.0 590
MS.gene78774.t1 AT5G13320 46.988 581 297 4 6 576 10 589 0.0 570
MS.gene78774.t1 AT5G13320 47.295 573 291 4 14 576 3 574 0.0 569
MS.gene78774.t1 AT5G13320 47.295 573 291 4 14 576 3 574 0.0 569
MS.gene78774.t1 AT5G13370 48.090 576 282 7 22 582 13 586 0.0 556
MS.gene78774.t1 AT5G13360 48.547 585 272 9 19 582 87 663 0.0 543
MS.gene78774.t1 AT5G13360 48.547 585 272 9 19 582 9 585 0.0 542
MS.gene78774.t1 AT5G13360 48.547 585 272 9 19 582 9 585 0.0 542
MS.gene78774.t1 AT5G13380 46.864 574 289 5 23 582 44 615 0.0 538
MS.gene78774.t1 AT1G28130 56.182 461 174 6 152 584 1 461 0.0 530
MS.gene78774.t1 AT5G13350 46.552 580 292 8 19 582 9 586 0.0 528
MS.gene78774.t1 AT5G13350 46.552 580 292 8 19 582 9 586 0.0 528
MS.gene78774.t1 AT1G48660 45.053 566 300 6 23 580 7 569 1.57e-179 520
MS.gene78774.t1 AT1G48660 44.621 567 304 5 23 580 7 572 1.66e-179 520
MS.gene78774.t1 AT5G51470 44.883 557 300 4 26 576 16 571 3.75e-172 501
MS.gene78774.t1 AT1G48670 41.918 563 267 6 26 580 11 521 1.71e-152 449
MS.gene78774.t1 AT5G51470 44.050 479 262 3 104 576 3 481 1.18e-141 420
MS.gene78774.t1 AT2G46370 39.254 563 323 9 26 576 17 572 1.06e-138 416
MS.gene78774.t1 AT2G46370 39.254 563 323 9 26 576 17 572 1.06e-138 416
MS.gene78774.t1 AT2G46370 39.254 563 323 9 26 576 28 583 2.40e-138 415
MS.gene78774.t1 AT1G48670 47.677 409 207 3 179 580 2 410 3.28e-137 406
MS.gene78774.t1 AT4G03400 34.669 574 343 6 25 571 14 582 5.28e-123 376
MS.gene78774.t1 AT4G03400 34.669 574 343 6 25 571 14 582 5.28e-123 376
MS.gene78774.t1 AT2G46370 38.600 500 290 7 87 576 1 493 2.26e-121 368
MS.gene78774.t1 AT1G48690 40.415 193 107 3 22 210 2 190 9.68e-41 147

Find 162 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGAAATTGGCATCATTTA+TGG 0.099376 5.1:-40687091 MS.gene78774:CDS
CGTTAAGTTTGAAGCGTTTA+AGG 0.105133 5.1:+40688688 None:intergenic
TTAAATCACCTTATCCTTTC+AGG 0.112309 5.1:+40686172 None:intergenic
AATCGTTGAATTCTGTTTAT+AGG 0.179457 5.1:-40686408 MS.gene78774:CDS
TACAATGACATCTAAATATT+TGG 0.200273 5.1:+40687011 None:intergenic
ACCATAAATGATGCCAATTT+CGG 0.222994 5.1:+40687090 None:intergenic
AAGAATGCTCAAATGAAAAT+TGG 0.234619 5.1:-40687065 MS.gene78774:CDS
TACTCCTATAATGGAGCTTT+TGG 0.260700 5.1:-40686245 MS.gene78774:CDS
TATCAAACCCGACCCGAAAT+TGG 0.272388 5.1:-40687103 MS.gene78774:CDS
AAGGACACCAGGTGGTTTAT+TGG 0.276363 5.1:-40687439 MS.gene78774:CDS
AAAACTGATGCCAACAATTA+AGG 0.280114 5.1:-40688250 MS.gene78774:CDS
GAGTCCAAAAGCTCCATTAT+AGG 0.283190 5.1:+40686241 None:intergenic
CCATAAATGATGCCAATTTC+GGG 0.284070 5.1:+40687091 None:intergenic
GAATTCCTACCTCACGAATC+AGG 0.303669 5.1:-40686820 MS.gene78774:CDS
CATTCTTTCGACGCACAAAA+TGG 0.304672 5.1:+40686656 None:intergenic
TATTTAGATGTCATTGTAAC+TGG 0.310356 5.1:-40687006 MS.gene78774:CDS
ACATCTAAATATTTGGTGTT+AGG 0.335608 5.1:+40687018 None:intergenic
CTGGTCTTCTCCGTGCAATT+AGG 0.337068 5.1:-40687227 MS.gene78774:CDS
CAGGTCATTATGTGATATAT+TGG 0.340991 5.1:-40686498 MS.gene78774:CDS
TTGTAGTAACTTGTGAGAAC+TGG 0.342828 5.1:+40687411 None:intergenic
TTAGGTTCCTTCAGCTCAAT+TGG 0.345131 5.1:-40687209 MS.gene78774:CDS
CTTAAACGCTTCAAACTTAA+CGG 0.349894 5.1:-40688687 MS.gene78774:CDS
GCATTTGAGTATACATGCTT+TGG 0.355525 5.1:+40687304 None:intergenic
CAGCGCCGAGGCGGAGGACT+TGG 0.357333 5.1:+40687259 None:intergenic
ATGGGATGAGCAGAGAGAAT+TGG 0.357351 5.1:+40688567 None:intergenic
TCCAACTCTTCCTTAATTGT+TGG 0.367620 5.1:+40688240 None:intergenic
TCAACAATTTCGTCACCATT+AGG 0.369734 5.1:-40688834 MS.gene78774:CDS
TTGAATGTCGTGGGCTAGTT+CGG 0.379478 5.1:+40687185 None:intergenic
CAATTGGACCATTGGAGATA+AGG 0.379586 5.1:-40686363 MS.gene78774:CDS
AAGGAATAATCACAAGGATT+TGG 0.385048 5.1:-40687041 MS.gene78774:CDS
GGGCAGAGAATGGCTTCATT+TGG 0.385806 5.1:+40687336 None:intergenic
AATTGGACCATTGGAGATAA+GGG 0.390905 5.1:-40686362 MS.gene78774:CDS
AATTCAAAGTAGGCCATGTT+TGG 0.394151 5.1:+40686838 None:intergenic
GAATAGGTGTTGTTTGGAAA+TGG 0.409700 5.1:-40686434 MS.gene78774:CDS
CTTATGTGAGAAGATGGATT+AGG 0.416476 5.1:-40686038 None:intergenic
TGCAGTTCTGGTACTTCAGC+TGG 0.420220 5.1:-40688279 MS.gene78774:intron
GGTGTTGAATAGGTGTTGTT+TGG 0.422522 5.1:-40686440 MS.gene78774:CDS
GAAACTTACAGGTTCATAAC+TGG 0.424623 5.1:+40688186 None:intergenic
AGAATGCTCAAATGAAAATT+GGG 0.430991 5.1:-40687064 MS.gene78774:CDS
ATGGTTTGCACATTGGATTA+AGG 0.431625 5.1:+40686884 None:intergenic
TAAATCACCTTATCCTTTCA+GGG 0.435307 5.1:+40686173 None:intergenic
CGAGTCATGAGGTGTTGAAT+AGG 0.435910 5.1:-40686450 MS.gene78774:CDS
ATTCTGTTTATAGGCAATGT+AGG 0.437291 5.1:-40686399 MS.gene78774:CDS
AGGGTTGCGGATCATTCAAT+TGG 0.439629 5.1:-40686379 MS.gene78774:CDS
GAGAGTCTTATGTGAGAAGA+TGG 0.442601 5.1:-40686044 MS.gene78774:CDS
CAAAGACAGCGCCGAGGCGG+AGG 0.445835 5.1:+40687253 None:intergenic
CTCGGCGCTGTCTTTGCCTC+TGG 0.447709 5.1:-40687246 MS.gene78774:CDS
AATGATGCCAATTTCGGGTC+GGG 0.448903 5.1:+40687096 None:intergenic
TACATGCTTTGGAATGAGTC+GGG 0.450583 5.1:+40687315 None:intergenic
TCACACGCAGGTGGACCTAA+TGG 0.456335 5.1:+40688819 None:intergenic
CACTCTTTCTTGAACGGCAT+CGG 0.459349 5.1:+40688749 None:intergenic
GGACTTGTGTAGACATTGTA+CGG 0.459915 5.1:+40687357 None:intergenic
TTGGCGATACGCTGAATCTC+TGG 0.464115 5.1:+40688603 None:intergenic
AGGTCATTATGTGATATATT+GGG 0.464196 5.1:-40686497 MS.gene78774:CDS
GGGTCCAATGTGGCAAATCT+TGG 0.475897 5.1:+40686194 None:intergenic
TTCCAACCTCCACCTCAGTA+AGG 0.479383 5.1:+40686779 None:intergenic
ATTGTACGGGTCAAAGGGTC+GGG 0.481788 5.1:+40687371 None:intergenic
GGTGACATTCTCCGTGTCAC+CGG 0.482004 5.1:-40686703 MS.gene78774:CDS
TTTGAATGTTTCACGGTCGA+TGG 0.483063 5.1:+40688662 None:intergenic
GAATGAGTCGGGGCAGAGAA+TGG 0.483203 5.1:+40687326 None:intergenic
GTGACATTCTCCGTGTCACC+GGG 0.486229 5.1:-40686702 MS.gene78774:CDS
TAGGTTCCTTCAGCTCAATT+GGG 0.487597 5.1:-40687208 MS.gene78774:CDS
TGTATAGGAAGGATTATTTG+AGG 0.488643 5.1:-40686066 MS.gene78774:intron
CTATTCAACACCTCATGACT+CGG 0.489683 5.1:+40686451 None:intergenic
ACCTCAGATGGTTTGCACAT+TGG 0.491763 5.1:+40686877 None:intergenic
GCCAACAATTAAGGAAGAGT+TGG 0.492449 5.1:-40688241 MS.gene78774:CDS
CACTTAATTACTACAGTGGT+GGG 0.494137 5.1:-40686960 MS.gene78774:CDS
TTCTGTTTATAGGCAATGTA+GGG 0.495131 5.1:-40686398 MS.gene78774:CDS
TTCGATGAATCGAAGTGCCT+TGG 0.498023 5.1:+40688788 None:intergenic
AGGTCCCGGTTTGAATGTCG+TGG 0.500373 5.1:+40687175 None:intergenic
GTAGACATTGTACGGGTCAA+AGG 0.501669 5.1:+40687365 None:intergenic
GGATCATTCAATTGGACCAT+TGG 0.509299 5.1:-40686371 MS.gene78774:CDS
CTAGCCCACGACATTCAAAC+CGG 0.513627 5.1:-40687180 MS.gene78774:CDS
GAGATAAGGGTTGTGAAGAG+TGG 0.515628 5.1:-40686349 MS.gene78774:CDS
AGGCAAAGACAGCGCCGAGG+CGG 0.517086 5.1:+40687250 None:intergenic
AACTCTGTAACGGTTCAATC+CGG 0.517270 5.1:+40686726 None:intergenic
ATTGGACCCCTGAAAGGATA+AGG 0.517985 5.1:-40686180 MS.gene78774:intron
CCAGGCTTGGACAAAGGAAA+AGG 0.518296 5.1:-40687492 MS.gene78774:CDS
CCTTGTTAGGAATTCAGAGA+TGG 0.518359 5.1:+40688548 None:intergenic
TGTCATTGTAACTGGTGCTA+TGG 0.521896 5.1:-40686998 MS.gene78774:CDS
TGTTGGCCTTACTGAGGTGG+AGG 0.527008 5.1:-40686785 MS.gene78774:CDS
GCAGACACGGAGACCATACC+AGG 0.528391 5.1:-40686517 MS.gene78774:CDS
GAACAGTTATGTACCAGGCT+TGG 0.528851 5.1:-40687505 MS.gene78774:intron
TATCACATAATGACCTGGTA+TGG 0.530639 5.1:+40686504 None:intergenic
AGCTAACACTCTTTCTTGAA+CGG 0.533051 5.1:+40688743 None:intergenic
TGTAGTAACTTGTGAGAACT+GGG 0.533261 5.1:+40687412 None:intergenic
AATTCCTACCTCACGAATCA+GGG 0.533465 5.1:-40686819 MS.gene78774:CDS
GGAGTAAAATTAACACACCT+TGG 0.535014 5.1:+40686262 None:intergenic
CGCAACCAAGTCCTCCGCCT+CGG 0.536258 5.1:-40687264 MS.gene78774:CDS
GGATTGAACCGTTACAGAGT+TGG 0.542624 5.1:-40686724 MS.gene78774:CDS
GACTTGTGTAGACATTGTAC+GGG 0.543894 5.1:+40687358 None:intergenic
AATTGGAGAGCGATCACCAT+TGG 0.544899 5.1:+40688584 None:intergenic
TCCAATGTGCAAACCATCTG+AGG 0.551056 5.1:-40686878 MS.gene78774:CDS
TAGACATTGTACGGGTCAAA+GGG 0.552212 5.1:+40687366 None:intergenic
GAATGGAACAGTTATGTACC+AGG 0.552354 5.1:-40687510 MS.gene78774:intron
TGAGAAGGCTGTATAGAAGC+TGG 0.552464 5.1:+40688211 None:intergenic
AACTGTTGGCCTTACTGAGG+TGG 0.556999 5.1:-40686788 MS.gene78774:CDS
TATTCAACACCTCATGACTC+GGG 0.558089 5.1:+40686452 None:intergenic
GTAAGGCCAACAGTTCTAGT+TGG 0.562466 5.1:+40686796 None:intergenic
CTTGTTAGGAATTCAGAGAT+GGG 0.564594 5.1:+40688549 None:intergenic
CATTGTACGGGTCAAAGGGT+CGG 0.565800 5.1:+40687370 None:intergenic
TCAGGGCCAACTAGAACTGT+TGG 0.566536 5.1:-40686802 MS.gene78774:CDS
TATGTACCAGGCTTGGACAA+AGG 0.567681 5.1:-40687498 MS.gene78774:CDS
ACATCATCGTACGTGATGAC+AGG 0.568242 5.1:+40688630 None:intergenic
ACACTTAATTACTACAGTGG+TGG 0.569697 5.1:-40686961 MS.gene78774:CDS
GTAGGCCATGTTTGGCATGA+TGG 0.569951 5.1:+40686846 None:intergenic
GGCCTTACTGAGGTGGAGGT+TGG 0.571411 5.1:-40686781 MS.gene78774:CDS
ATACATGCTTTGGAATGAGT+CGG 0.571825 5.1:+40687314 None:intergenic
GTTCGGCCCAATTGAGCTGA+AGG 0.577120 5.1:+40687202 None:intergenic
GTGAGGTAGGAATTCAAAGT+AGG 0.577752 5.1:+40686828 None:intergenic
CAATATATCACATAATGACC+TGG 0.578248 5.1:+40686499 None:intergenic
TTATAGGCAATGTAGGGTTG+CGG 0.579521 5.1:-40686392 MS.gene78774:CDS
TGCCACATTGGACCCCTGAA+AGG 0.581160 5.1:-40686186 MS.gene78774:CDS
GCTTCCTCAGAATGCTACTT+CGG 0.581209 5.1:-40686913 MS.gene78774:CDS
GAGATTCAGCGTATCGCCAA+TGG 0.582720 5.1:-40688600 MS.gene78774:CDS
AAATGATGCCAATTTCGGGT+CGG 0.583995 5.1:+40687095 None:intergenic
TGCTCAAATGAAAATTGGGA+AGG 0.585393 5.1:-40687060 MS.gene78774:CDS
TTCACAACCCTTATCTCCAA+TGG 0.585801 5.1:+40686355 None:intergenic
GTAACTTGTGAGAACTGGGC+GGG 0.588468 5.1:+40687416 None:intergenic
CCACTGTAGTAATTAAGTGT+TGG 0.589297 5.1:+40686964 None:intergenic
TAAATCAATATAAAGTTCCA+AGG 0.589347 5.1:-40686279 MS.gene78774:CDS
TTGGCCCTGATTCGTGAGGT+AGG 0.591553 5.1:+40686815 None:intergenic
TTAGCCAAGATTTGCCACAT+TGG 0.594038 5.1:-40686198 MS.gene78774:CDS
GCGTCTTTGTCACACGCAGG+TGG 0.596535 5.1:+40688810 None:intergenic
TTGGCGTCTTTGTCACACGC+AGG 0.597121 5.1:+40688807 None:intergenic
GGTTCATAACTGGCATGAGA+AGG 0.599092 5.1:+40688196 None:intergenic
AAATCACCTTATCCTTTCAG+GGG 0.599858 5.1:+40686174 None:intergenic
CGACGCACAAAATGGAATTG+TGG 0.600454 5.1:+40686664 None:intergenic
AGTTATGAAACCCGGTGACA+CGG 0.604464 5.1:+40686692 None:intergenic
ATACACCATCATGCCAAACA+TGG 0.605774 5.1:-40686851 MS.gene78774:CDS
GGTCCCGGTTTGAATGTCGT+GGG 0.606229 5.1:+40687176 None:intergenic
CCATCTCTGAATTCCTAACA+AGG 0.606610 5.1:-40688548 MS.gene78774:intron
GCATACATAGTACATGAAAG+AGG 0.609084 5.1:+40686934 None:intergenic
ATGGATTATGCAATCTCAAG+AGG 0.609927 5.1:-40686310 MS.gene78774:CDS
GGGCGGGCCAATAAACCACC+TGG 0.611629 5.1:+40687432 None:intergenic
TGTGTTGCTTAGTATTGACT+CGG 0.611775 5.1:-40686635 MS.gene78774:CDS
TGTTTGTGAAGTCAGAAACA+AGG 0.618361 5.1:-40687458 MS.gene78774:CDS
GTAACGGTTCAATCCGGCGT+AGG 0.619829 5.1:+40686732 None:intergenic
CTAGTTGGCCCTGATTCGTG+AGG 0.624881 5.1:+40686811 None:intergenic
ATGTATACTCAAATGCTATG+TGG 0.627170 5.1:-40687297 MS.gene78774:CDS
AAGTCAGAAACAAGGACACC+AGG 0.629086 5.1:-40687450 MS.gene78774:CDS
AGCAGACTCCCCGAGTCATG+AGG 0.629198 5.1:-40686461 MS.gene78774:CDS
TGCGTGTGACAAAGACGCCA+AGG 0.632461 5.1:-40688805 MS.gene78774:CDS
ATCCTTTCAGGGGTCCAATG+TGG 0.633793 5.1:+40686184 None:intergenic
CCAACACTTAATTACTACAG+TGG 0.642475 5.1:-40686964 MS.gene78774:CDS
GAATGTCACCAACTCTGTAA+CGG 0.642994 5.1:+40686716 None:intergenic
GCTGAAGGAACCTAATTGCA+CGG 0.646007 5.1:+40687217 None:intergenic
CAGAGGCAAAGACAGCGCCG+AGG 0.652151 5.1:+40687247 None:intergenic
AAGTCCGAAGTAGCATTCTG+AGG 0.652236 5.1:+40686909 None:intergenic
TTCTGAGTTTAACACGAGTG+TGG 0.662200 5.1:-40686557 MS.gene78774:CDS
ACATGCTTTGGAATGAGTCG+GGG 0.673461 5.1:+40687316 None:intergenic
TAGCCCACGACATTCAAACC+GGG 0.688554 5.1:-40687179 MS.gene78774:CDS
ATGGTGTATGAAACCTCAGA+TGG 0.689410 5.1:+40686865 None:intergenic
TAGAACTGTTGGCCTTACTG+AGG 0.692044 5.1:-40686791 MS.gene78774:CDS
ATTGGGAAGGAATAATCACA+AGG 0.697048 5.1:-40687047 MS.gene78774:CDS
ATTCAACACCTCATGACTCG+GGG 0.699615 5.1:+40686453 None:intergenic
TGGTGCTGAGTTATGAAACC+CGG 0.702188 5.1:+40686684 None:intergenic
CTTGTGATCACTACCTACGC+CGG 0.712498 5.1:-40686745 MS.gene78774:CDS
GTACACGAGTTATGCAGACA+CGG 0.716614 5.1:-40686530 MS.gene78774:CDS
TCAGAAACAAGGACACCAGG+TGG 0.735786 5.1:-40687447 MS.gene78774:CDS
AATTGCACGGAGAAGACCAG+AGG 0.736919 5.1:+40687230 None:intergenic
AGTAACTTGTGAGAACTGGG+CGG 0.746811 5.1:+40687415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTATTTTTTTAAATT+GGG - chr5.1:40686571-40686590 MS.gene78774:CDS 0.0%
!!! TATTAATTATTTTTTTAAAT+TGG - chr5.1:40686570-40686589 MS.gene78774:CDS 0.0%
!!! TTATATATAATATTTTTAAA+TGG - chr5.1:40686537-40686556 MS.gene78774:CDS 0.0%
!!! ATGTACATTTTTATTTTTTT+AGG - chr5.1:40686976-40686995 MS.gene78774:CDS 10.0%
!!! ATTATTGTTATTTTTTTTGA+AGG - chr5.1:40686881-40686900 MS.gene78774:CDS 10.0%
!!! TGATGTTTTATAAATTAAAA+TGG + chr5.1:40687083-40687102 None:intergenic 10.0%
!!! TTTTTTTTTTTTAAAAAAGG+AGG - chr5.1:40687168-40687187 MS.gene78774:CDS 10.0%
!! AAAATTCAATATACTAGTAA+TGG + chr5.1:40687141-40687160 None:intergenic 15.0%
!! ACGAAAAAAAAGAAAAAATT+GGG + chr5.1:40686365-40686384 None:intergenic 15.0%
!! CTAAACAAAAGAAAAAAAAT+TGG + chr5.1:40686463-40686482 None:intergenic 15.0%
!!! AATAGATTAATTTTGACATT+TGG - chr5.1:40688734-40688753 MS.gene78774:CDS 15.0%
!!! AGAGTTTTTTTATTTATAAC+TGG - chr5.1:40686846-40686865 MS.gene78774:CDS 15.0%
!!! ATAGATTAATTTTGACATTT+GGG - chr5.1:40688735-40688754 MS.gene78774:CDS 15.0%
!!! TTGTTTATACTTTAGAAATA+TGG + chr5.1:40687272-40687291 None:intergenic 15.0%
!! CACGAAAAAAAAGAAAAAAT+TGG + chr5.1:40686366-40686385 None:intergenic 20.0%
!! GGAAATTATTGTAACAAAAA+CGG - chr5.1:40686902-40686921 MS.gene78774:CDS 20.0%
!! TAAATCAATATAAAGTTCCA+AGG - chr5.1:40688606-40688625 MS.gene78774:CDS 20.0%
!! TACAATGACATCTAAATATT+TGG + chr5.1:40687877-40687896 None:intergenic 20.0%
!! TATAGAGATAAAATAACGTT+GGG + chr5.1:40687202-40687221 None:intergenic 20.0%
!! TTATAGAGATAAAATAACGT+TGG + chr5.1:40687203-40687222 None:intergenic 20.0%
!! TTATCCTAATAAATAGTTGA+AGG + chr5.1:40686798-40686817 None:intergenic 20.0%
!!! AAAAGGGTTATTATTTTGAA+TGG - chr5.1:40687358-40687377 MS.gene78774:CDS 20.0%
!!! CAATTTTTTCTTTTTTTTCG+TGG - chr5.1:40686364-40686383 MS.gene78774:CDS 20.0%
!!! CGTTATTTTATCTCTATAAA+AGG - chr5.1:40687204-40687223 MS.gene78774:CDS 20.0%
!!! TCATGTGATCTTTTATATTT+TGG + chr5.1:40687755-40687774 None:intergenic 20.0%
!!! TGTTAATTTTACTCCTATAA+TGG - chr5.1:40688631-40688650 MS.gene78774:CDS 20.0%
! AAACACATTAATTAAGCACA+TGG + chr5.1:40686756-40686775 None:intergenic 25.0%
! AAGAATGCTCAAATGAAAAT+TGG - chr5.1:40687820-40687839 MS.gene78774:intron 25.0%
! AATCGTTGAATTCTGTTTAT+AGG - chr5.1:40688477-40688496 MS.gene78774:intron 25.0%
! AGAATGCTCAAATGAAAATT+GGG - chr5.1:40687821-40687840 MS.gene78774:intron 25.0%
! AGGTCATTATGTGATATATT+GGG - chr5.1:40688388-40688407 MS.gene78774:intron 25.0%
! ATTTGAAAGATGAAACTTAC+AGG + chr5.1:40686713-40686732 None:intergenic 25.0%
! GAAACCTTCAACTATTTATT+AGG - chr5.1:40686791-40686810 MS.gene78774:CDS 25.0%
! TATTTAGATGTCATTGTAAC+TGG - chr5.1:40687879-40687898 MS.gene78774:intron 25.0%
!! TTGCAATTTGTATCTTCTTT+TGG - chr5.1:40688787-40688806 MS.gene78774:CDS 25.0%
!!! ACATCTAAATATTTGGTGTT+AGG + chr5.1:40687870-40687889 None:intergenic 25.0%
!!! ATATTTTGGTCAGTGATTTT+AGG + chr5.1:40687741-40687760 None:intergenic 25.0%
!!! TCTTTGTTTTGAATGTTTCA+CGG + chr5.1:40686233-40686252 None:intergenic 25.0%
!!! TCTTTTGTTTAGTCGTTAAT+TGG - chr5.1:40686471-40686490 MS.gene78774:CDS 25.0%
!!! TTTTAAAAAAGGAGGATCAA+AGG - chr5.1:40687176-40687195 MS.gene78774:CDS 25.0%
!!! TTTTGGTTGATGAAATGTAT+AGG - chr5.1:40688804-40688823 MS.gene78774:CDS 25.0%
!!! TTTTTTCTTTTTTTTCGTGG+TGG - chr5.1:40686367-40686386 MS.gene78774:CDS 25.0%
AAAAAATTGGGTACCTTGTT+AGG + chr5.1:40686353-40686372 None:intergenic 30.0%
AAAACTGATGCCAACAATTA+AGG - chr5.1:40686635-40686654 MS.gene78774:CDS 30.0%
AAGGAATAATCACAAGGATT+TGG - chr5.1:40687844-40687863 MS.gene78774:intron 30.0%
AATTAAGCACATGGTATATG+TGG + chr5.1:40686747-40686766 None:intergenic 30.0%
ACCATAAATGATGCCAATTT+CGG + chr5.1:40687798-40687817 None:intergenic 30.0%
ATGTATACTCAAATGCTATG+TGG - chr5.1:40687588-40687607 MS.gene78774:intron 30.0%
ATTCTGTTTATAGGCAATGT+AGG - chr5.1:40688486-40688505 MS.gene78774:intron 30.0%
ATTTGTGCTAAGTGCTAAAA+AGG - chr5.1:40687341-40687360 MS.gene78774:CDS 30.0%
CAATATATCACATAATGACC+TGG + chr5.1:40688389-40688408 None:intergenic 30.0%
CAGGTCATTATGTGATATAT+TGG - chr5.1:40688387-40688406 MS.gene78774:intron 30.0%
CTTAAACGCTTCAAACTTAA+CGG - chr5.1:40686198-40686217 MS.gene78774:CDS 30.0%
GACAATGCATAGTATATGAA+AGG + chr5.1:40686411-40686430 None:intergenic 30.0%
TAAATCACCTTATCCTTTCA+GGG + chr5.1:40688715-40688734 None:intergenic 30.0%
TGTATAGGAAGGATTATTTG+AGG - chr5.1:40688819-40688838 MS.gene78774:CDS 30.0%
TTAAATCACCTTATCCTTTC+AGG + chr5.1:40688716-40688735 None:intergenic 30.0%
TTCTGTTTATAGGCAATGTA+GGG - chr5.1:40688487-40688506 MS.gene78774:intron 30.0%
TTTGTGCTAAGTGCTAAAAA+GGG - chr5.1:40687342-40687361 MS.gene78774:CDS 30.0%
!!! GTCAGTGATTTTAGGATTTA+AGG + chr5.1:40687733-40687752 None:intergenic 30.0%
AAATCACCTTATCCTTTCAG+GGG + chr5.1:40688714-40688733 None:intergenic 35.0%
AACTCTTGAATTTGCAGTTC+TGG - chr5.1:40686594-40686613 MS.gene78774:CDS 35.0%
AATTCAAAGTAGGCCATGTT+TGG + chr5.1:40688050-40688069 None:intergenic 35.0%
AATTGGACCATTGGAGATAA+GGG - chr5.1:40688523-40688542 MS.gene78774:intron 35.0%
ACACTTAATTACTACAGTGG+TGG - chr5.1:40687924-40687943 MS.gene78774:intron 35.0%
AGCTAACACTCTTTCTTGAA+CGG + chr5.1:40686145-40686164 None:intergenic 35.0%
ATTGGGAAGGAATAATCACA+AGG - chr5.1:40687838-40687857 MS.gene78774:intron 35.0%
CACTTAATTACTACAGTGGT+GGG - chr5.1:40687925-40687944 MS.gene78774:intron 35.0%
CCAACACTTAATTACTACAG+TGG - chr5.1:40687921-40687940 MS.gene78774:intron 35.0%
CCACTGTAGTAATTAAGTGT+TGG + chr5.1:40687924-40687943 None:intergenic 35.0%
CCATAAATGATGCCAATTTC+GGG + chr5.1:40687797-40687816 None:intergenic 35.0%
CTTGTTAGGAATTCAGAGAT+GGG + chr5.1:40686339-40686358 None:intergenic 35.0%
GAAACTTACAGGTTCATAAC+TGG + chr5.1:40686702-40686721 None:intergenic 35.0%
GCATACATAGTACATGAAAG+AGG + chr5.1:40687954-40687973 None:intergenic 35.0%
GCATAGTATATGAAAGGTCT+GGG + chr5.1:40686405-40686424 None:intergenic 35.0%
GCATTTGAGTATACATGCTT+TGG + chr5.1:40687584-40687603 None:intergenic 35.0%
GGAGTAAAATTAACACACCT+TGG + chr5.1:40688626-40688645 None:intergenic 35.0%
TATCACATAATGACCTGGTA+TGG + chr5.1:40688384-40688403 None:intergenic 35.0%
TCAACAATTTCGTCACCATT+AGG - chr5.1:40686051-40686070 MS.gene78774:CDS 35.0%
TCCAACTCTTCCTTAATTGT+TGG + chr5.1:40686648-40686667 None:intergenic 35.0%
TGCATAGTATATGAAAGGTC+TGG + chr5.1:40686406-40686425 None:intergenic 35.0%
TGCTCAAATGAAAATTGGGA+AGG - chr5.1:40687825-40687844 MS.gene78774:intron 35.0%
TGTTTGTGAAGTCAGAAACA+AGG - chr5.1:40687427-40687446 MS.gene78774:CDS 35.0%
! ATGGATTATGCAATCTCAAG+AGG - chr5.1:40688575-40688594 MS.gene78774:CDS 35.0%
! ATGGTTTGCACATTGGATTA+AGG + chr5.1:40688004-40688023 None:intergenic 35.0%
! CGTTAAGTTTGAAGCGTTTA+AGG + chr5.1:40686200-40686219 None:intergenic 35.0%
! TGTAGTAACTTGTGAGAACT+GGG + chr5.1:40687476-40687495 None:intergenic 35.0%
! TTGTAGTAACTTGTGAGAAC+TGG + chr5.1:40687477-40687496 None:intergenic 35.0%
! TTTTGACATTTGGGCTTACT+GGG - chr5.1:40688744-40688763 MS.gene78774:CDS 35.0%
!! ATACATGCTTTGGAATGAGT+CGG + chr5.1:40687574-40687593 None:intergenic 35.0%
!! ATTTTGACATTTGGGCTTAC+TGG - chr5.1:40688743-40688762 MS.gene78774:CDS 35.0%
!! GAATAGGTGTTGTTTGGAAA+TGG - chr5.1:40688451-40688470 MS.gene78774:intron 35.0%
!! GGTTGATGAAATGTATAGGA+AGG - chr5.1:40688808-40688827 MS.gene78774:CDS 35.0%
!! TACTCCTATAATGGAGCTTT+TGG - chr5.1:40688640-40688659 MS.gene78774:CDS 35.0%
!! TGTGTTGCTTAGTATTGACT+CGG - chr5.1:40688250-40688269 MS.gene78774:CDS 35.0%
!!! GATTTTAGGATTTAAGGTCC+CGG + chr5.1:40687727-40687746 None:intergenic 35.0%
!!! TTCTTTTTTTTCGTGGTGGT+CGG - chr5.1:40686371-40686390 MS.gene78774:CDS 35.0%
AACTCTGTAACGGTTCAATC+CGG + chr5.1:40688162-40688181 None:intergenic 40.0%
AATTCCTACCTCACGAATCA+GGG - chr5.1:40688066-40688085 MS.gene78774:intron 40.0%
ATACACCATCATGCCAAACA+TGG - chr5.1:40688034-40688053 MS.gene78774:intron 40.0%
ATGGTGTATGAAACCTCAGA+TGG + chr5.1:40688023-40688042 None:intergenic 40.0%
CAATTGGACCATTGGAGATA+AGG - chr5.1:40688522-40688541 MS.gene78774:intron 40.0%
CATTCTTTCGACGCACAAAA+TGG + chr5.1:40688232-40688251 None:intergenic 40.0%
CCATCTCTGAATTCCTAACA+AGG - chr5.1:40686337-40686356 MS.gene78774:CDS 40.0%
CCCGAAATTGGCATCATTTA+TGG - chr5.1:40687794-40687813 MS.gene78774:intron 40.0%
CCTTGTTAGGAATTCAGAGA+TGG + chr5.1:40686340-40686359 None:intergenic 40.0%
CTATTCAACACCTCATGACT+CGG + chr5.1:40688437-40688456 None:intergenic 40.0%
GAATGGAACAGTTATGTACC+AGG - chr5.1:40687375-40687394 MS.gene78774:CDS 40.0%
GAATGTCACCAACTCTGTAA+CGG + chr5.1:40688172-40688191 None:intergenic 40.0%
GACTTGTGTAGACATTGTAC+GGG + chr5.1:40687530-40687549 None:intergenic 40.0%
GAGTCCAAAAGCTCCATTAT+AGG + chr5.1:40688647-40688666 None:intergenic 40.0%
GCCAACAATTAAGGAAGAGT+TGG - chr5.1:40686644-40686663 MS.gene78774:CDS 40.0%
GGACTTGTGTAGACATTGTA+CGG + chr5.1:40687531-40687550 None:intergenic 40.0%
GGATCATTCAATTGGACCAT+TGG - chr5.1:40688514-40688533 MS.gene78774:intron 40.0%
GTGAGGTAGGAATTCAAAGT+AGG + chr5.1:40688060-40688079 None:intergenic 40.0%
TAGACATTGTACGGGTCAAA+GGG + chr5.1:40687522-40687541 None:intergenic 40.0%
TAGGTTCCTTCAGCTCAATT+GGG - chr5.1:40687677-40687696 MS.gene78774:intron 40.0%
TATGCATTGTCTCTACCAAC+TGG - chr5.1:40686420-40686439 MS.gene78774:CDS 40.0%
TATTCAACACCTCATGACTC+GGG + chr5.1:40688436-40688455 None:intergenic 40.0%
TTAGCCAAGATTTGCCACAT+TGG - chr5.1:40688687-40688706 MS.gene78774:CDS 40.0%
TTAGGTTCCTTCAGCTCAAT+TGG - chr5.1:40687676-40687695 MS.gene78774:intron 40.0%
TTATAGGCAATGTAGGGTTG+CGG - chr5.1:40688493-40688512 MS.gene78774:intron 40.0%
TTCACAACCCTTATCTCCAA+TGG + chr5.1:40688533-40688552 None:intergenic 40.0%
TTCTGAGTTTAACACGAGTG+TGG - chr5.1:40688328-40688347 MS.gene78774:intron 40.0%
TTTGAATGTTTCACGGTCGA+TGG + chr5.1:40686226-40686245 None:intergenic 40.0%
! AAATGATGCCAATTTCGGGT+CGG + chr5.1:40687793-40687812 None:intergenic 40.0%
! AATGGAGCTTTTGGACTCTA+GGG - chr5.1:40688649-40688668 MS.gene78774:CDS 40.0%
! GAGAGTCTTATGTGAGAAGA+TGG - chr5.1:40688841-40688860 MS.gene78774:CDS 40.0%
! TAATGGAGCTTTTGGACTCT+AGG - chr5.1:40688648-40688667 MS.gene78774:CDS 40.0%
! TGTCATTGTAACTGGTGCTA+TGG - chr5.1:40687887-40687906 MS.gene78774:intron 40.0%
! TGTGAAGAGTGGAACTTTTG+AGG - chr5.1:40688547-40688566 MS.gene78774:intron 40.0%
!! GGTGTTGAATAGGTGTTGTT+TGG - chr5.1:40688445-40688464 MS.gene78774:intron 40.0%
!! TACATGCTTTGGAATGAGTC+GGG + chr5.1:40687573-40687592 None:intergenic 40.0%
!! TGGAACTTTTGAGGAGCTTA+TGG - chr5.1:40688556-40688575 MS.gene78774:CDS 40.0%
!!! TCTTTTTTTTCGTGGTGGTC+GGG - chr5.1:40686372-40686391 MS.gene78774:CDS 40.0%
AAGGACACCAGGTGGTTTAT+TGG - chr5.1:40687446-40687465 MS.gene78774:CDS 45.0%
AAGTCAGAAACAAGGACACC+AGG - chr5.1:40687435-40687454 MS.gene78774:CDS 45.0%
AAGTCCGAAGTAGCATTCTG+AGG + chr5.1:40687979-40687998 None:intergenic 45.0%
AATTGGAGAGCGATCACCAT+TGG + chr5.1:40686304-40686323 None:intergenic 45.0%
ACATCATCGTACGTGATGAC+AGG + chr5.1:40686258-40686277 None:intergenic 45.0%
AGGGTTGCGGATCATTCAAT+TGG - chr5.1:40688506-40688525 MS.gene78774:intron 45.0%
AGTTATGAAACCCGGTGACA+CGG + chr5.1:40688196-40688215 None:intergenic 45.0%
ATGGGATGAGCAGAGAGAAT+TGG + chr5.1:40686321-40686340 None:intergenic 45.0%
ATTCAACACCTCATGACTCG+GGG + chr5.1:40688435-40688454 None:intergenic 45.0%
ATTGGACCCCTGAAAGGATA+AGG - chr5.1:40688705-40688724 MS.gene78774:CDS 45.0%
CACTCTTTCTTGAACGGCAT+CGG + chr5.1:40686139-40686158 None:intergenic 45.0%
CGACGCACAAAATGGAATTG+TGG + chr5.1:40688224-40688243 None:intergenic 45.0%
GAACAGTTATGTACCAGGCT+TGG - chr5.1:40687380-40687399 MS.gene78774:CDS 45.0%
GAATTCCTACCTCACGAATC+AGG - chr5.1:40688065-40688084 MS.gene78774:intron 45.0%
GAGATAAGGGTTGTGAAGAG+TGG - chr5.1:40688536-40688555 MS.gene78774:intron 45.0%
GCTGAAGGAACCTAATTGCA+CGG + chr5.1:40687671-40687690 None:intergenic 45.0%
GGATTGAACCGTTACAGAGT+TGG - chr5.1:40688161-40688180 MS.gene78774:intron 45.0%
GGTTCATAACTGGCATGAGA+AGG + chr5.1:40686692-40686711 None:intergenic 45.0%
GTACACGAGTTATGCAGACA+CGG - chr5.1:40688355-40688374 MS.gene78774:intron 45.0%
GTAGACATTGTACGGGTCAA+AGG + chr5.1:40687523-40687542 None:intergenic 45.0%
GTCAGAGCTACAAAAAGCAG+TGG - chr5.1:40688286-40688305 MS.gene78774:intron 45.0%
TATCAAACCCGACCCGAAAT+TGG - chr5.1:40687782-40687801 MS.gene78774:intron 45.0%
TATGTACCAGGCTTGGACAA+AGG - chr5.1:40687387-40687406 MS.gene78774:CDS 45.0%
TCCAATGTGCAAACCATCTG+AGG - chr5.1:40688007-40688026 MS.gene78774:intron 45.0%
TGAGAAGGCTGTATAGAAGC+TGG + chr5.1:40686677-40686696 None:intergenic 45.0%
! AATGATGCCAATTTCGGGTC+GGG + chr5.1:40687792-40687811 None:intergenic 45.0%
! ACCTCAGATGGTTTGCACAT+TGG + chr5.1:40688011-40688030 None:intergenic 45.0%
! AGTAACTTGTGAGAACTGGG+CGG + chr5.1:40687473-40687492 None:intergenic 45.0%
! GCTTCCTCAGAATGCTACTT+CGG - chr5.1:40687972-40687991 MS.gene78774:intron 45.0%
! GTAAGGCCAACAGTTCTAGT+TGG + chr5.1:40688092-40688111 None:intergenic 45.0%
! TGGTGCTGAGTTATGAAACC+CGG + chr5.1:40688204-40688223 None:intergenic 45.0%
! TTCGATGAATCGAAGTGCCT+TGG + chr5.1:40686100-40686119 None:intergenic 45.0%
!! ACATGCTTTGGAATGAGTCG+GGG + chr5.1:40687572-40687591 None:intergenic 45.0%
!! CGAGTCATGAGGTGTTGAAT+AGG - chr5.1:40688435-40688454 MS.gene78774:intron 45.0%
!! TAGAACTGTTGGCCTTACTG+AGG - chr5.1:40688094-40688113 MS.gene78774:intron 45.0%
!! TTGAATGTCGTGGGCTAGTT+CGG + chr5.1:40687703-40687722 None:intergenic 45.0%
!!! CTTTTTTTTCGTGGTGGTCG+GGG - chr5.1:40686373-40686392 MS.gene78774:CDS 45.0%
!! TATATATAAAAATAAAAAGT+AGG + chr5.1:40686526-40686545 None:intergenic 5.0%
!!! TCATTTTTTTTTTTTAAAAA+AGG - chr5.1:40687165-40687184 MS.gene78774:CDS 5.0%
AATTGCACGGAGAAGACCAG+AGG + chr5.1:40687658-40687677 None:intergenic 50.0%
ATCCTTTCAGGGGTCCAATG+TGG + chr5.1:40688704-40688723 None:intergenic 50.0%
ATTGTACGGGTCAAAGGGTC+GGG + chr5.1:40687517-40687536 None:intergenic 50.0%
CATTGTACGGGTCAAAGGGT+CGG + chr5.1:40687518-40687537 None:intergenic 50.0%
CCAGGCTTGGACAAAGGAAA+AGG - chr5.1:40687393-40687412 MS.gene78774:CDS 50.0%
CTAGCCCACGACATTCAAAC+CGG - chr5.1:40687705-40687724 MS.gene78774:intron 50.0%
CTTGTGATCACTACCTACGC+CGG - chr5.1:40688140-40688159 MS.gene78774:intron 50.0%
GAGATTCAGCGTATCGCCAA+TGG - chr5.1:40686285-40686304 MS.gene78774:CDS 50.0%
GGGCAGAGAATGGCTTCATT+TGG + chr5.1:40687552-40687571 None:intergenic 50.0%
GGGTCCAATGTGGCAAATCT+TGG + chr5.1:40688694-40688713 None:intergenic 50.0%
GTAGGCCATGTTTGGCATGA+TGG + chr5.1:40688042-40688061 None:intergenic 50.0%
TAGCCCACGACATTCAAACC+GGG - chr5.1:40687706-40687725 MS.gene78774:intron 50.0%
TCAGAAACAAGGACACCAGG+TGG - chr5.1:40687438-40687457 MS.gene78774:CDS 50.0%
TCAGGGCCAACTAGAACTGT+TGG - chr5.1:40688083-40688102 MS.gene78774:intron 50.0%
TTCCAACCTCCACCTCAGTA+AGG + chr5.1:40688109-40688128 None:intergenic 50.0%
TTGGCGATACGCTGAATCTC+TGG + chr5.1:40686285-40686304 None:intergenic 50.0%
! CCTTTTCCTTTGTCCAAGCC+TGG + chr5.1:40687396-40687415 None:intergenic 50.0%
! CTGGTCTTCTCCGTGCAATT+AGG - chr5.1:40687658-40687677 MS.gene78774:intron 50.0%
! GTAACTTGTGAGAACTGGGC+GGG + chr5.1:40687472-40687491 None:intergenic 50.0%
! TGCAGTTCTGGTACTTCAGC+TGG - chr5.1:40686606-40686625 MS.gene78774:CDS 50.0%
!! AACTGTTGGCCTTACTGAGG+TGG - chr5.1:40688097-40688116 MS.gene78774:intron 50.0%
ATCGCGAGCTTAGCTCCAGT+TGG + chr5.1:40686438-40686457 None:intergenic 55.0%
GAATGAGTCGGGGCAGAGAA+TGG + chr5.1:40687562-40687581 None:intergenic 55.0%
GGTGACATTCTCCGTGTCAC+CGG - chr5.1:40688182-40688201 MS.gene78774:intron 55.0%
GTAACGGTTCAATCCGGCGT+AGG + chr5.1:40688156-40688175 None:intergenic 55.0%
GTGACATTCTCCGTGTCACC+GGG - chr5.1:40688183-40688202 MS.gene78774:intron 55.0%
GTTCGGCCCAATTGAGCTGA+AGG + chr5.1:40687686-40687705 None:intergenic 55.0%
TCACACGCAGGTGGACCTAA+TGG + chr5.1:40686069-40686088 None:intergenic 55.0%
TGCCACATTGGACCCCTGAA+AGG - chr5.1:40688699-40688718 MS.gene78774:CDS 55.0%
TGCGTGTGACAAAGACGCCA+AGG - chr5.1:40686080-40686099 MS.gene78774:intron 55.0%
TTGGCGTCTTTGTCACACGC+AGG + chr5.1:40686081-40686100 None:intergenic 55.0%
! AGGTCCCGGTTTGAATGTCG+TGG + chr5.1:40687713-40687732 None:intergenic 55.0%
! CTAGTTGGCCCTGATTCGTG+AGG + chr5.1:40688077-40688096 None:intergenic 55.0%
! GGTCCCGGTTTGAATGTCGT+GGG + chr5.1:40687712-40687731 None:intergenic 55.0%
! TTGGCCCTGATTCGTGAGGT+AGG + chr5.1:40688073-40688092 None:intergenic 55.0%
!! GGAGCTTTTGGACTCTAGGG+TGG - chr5.1:40688652-40688671 MS.gene78774:CDS 55.0%
!! TGTTGGCCTTACTGAGGTGG+AGG - chr5.1:40688100-40688119 MS.gene78774:intron 55.0%
AGCAGACTCCCCGAGTCATG+AGG - chr5.1:40688424-40688443 MS.gene78774:intron 60.0%
GCAGACACGGAGACCATACC+AGG - chr5.1:40688368-40688387 MS.gene78774:intron 60.0%
GCGTCTTTGTCACACGCAGG+TGG + chr5.1:40686078-40686097 None:intergenic 60.0%
GGCCTTACTGAGGTGGAGGT+TGG - chr5.1:40688104-40688123 MS.gene78774:intron 60.0%
CAGAGGCAAAGACAGCGCCG+AGG + chr5.1:40687641-40687660 None:intergenic 65.0%
CGCAACCAAGTCCTCCGCCT+CGG - chr5.1:40687621-40687640 MS.gene78774:intron 65.0%
CTCGGCGCTGTCTTTGCCTC+TGG - chr5.1:40687639-40687658 MS.gene78774:intron 65.0%
GGGCGGGCCAATAAACCACC+TGG + chr5.1:40687456-40687475 None:intergenic 65.0%
! AGGCAAAGACAGCGCCGAGG+CGG + chr5.1:40687638-40687657 None:intergenic 65.0%
! CAAAGACAGCGCCGAGGCGG+AGG + chr5.1:40687635-40687654 None:intergenic 70.0%
! CAGCGCCGAGGCGGAGGACT+TGG + chr5.1:40687629-40687648 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 40686039 40688868 40686039 ID=MS.gene78774
chr5.1 mRNA 40686039 40688868 40686039 ID=MS.gene78774.t1;Parent=MS.gene78774
chr5.1 exon 40688549 40688868 40688549 ID=MS.gene78774.t1.exon1;Parent=MS.gene78774.t1
chr5.1 CDS 40688549 40688868 40688549 ID=cds.MS.gene78774.t1;Parent=MS.gene78774.t1
chr5.1 exon 40688195 40688296 40688195 ID=MS.gene78774.t1.exon2;Parent=MS.gene78774.t1
chr5.1 CDS 40688195 40688296 40688195 ID=cds.MS.gene78774.t1;Parent=MS.gene78774.t1
chr5.1 exon 40686181 40687521 40686181 ID=MS.gene78774.t1.exon3;Parent=MS.gene78774.t1
chr5.1 CDS 40686181 40687521 40686181 ID=cds.MS.gene78774.t1;Parent=MS.gene78774.t1
chr5.1 exon 40686039 40686081 40686039 ID=MS.gene78774.t1.exon4;Parent=MS.gene78774.t1
chr5.1 CDS 40686039 40686081 40686039 ID=cds.MS.gene78774.t1;Parent=MS.gene78774.t1
Gene Sequence

>MS.gene78774

ATGGCTGTTGATTCAACAATTTCGTCACCATTAGGTCCACCTGCGTGTGACAAAGACGCCAAGGCACTTCGATTCATCGAAGAGATGACTCGAAATGCCGATGCCGTTCAAGAAAGAGTGTTAGCTGAGATTCTAAGCAGAAACGCAGAGACAGAATACCTTAAACGCTTCAAACTTAACGGCGCCATCGACCGTGAAACATTCAAAACAAAGATTCCTGTCATCACGTACGATGATGTTCAACCAGAGATTCAGCGTATCGCCAATGGTGATCGCTCTCCAATTCTCTCTGCTCATCCCATCTCTGAATTCCTAACAAGGTACCCAATTTTTTCTTTTTTTTCGTGGTGGTCGGGGTTTGAACCCAGACCTTTCATATACTATGCATTGTCTCTACCAACTGGAGCTAAGCTCGCGATGACCAATTTTTTTTCTTTTGTTTAGTCGTTAATTGGTCTAAAATTTTATCTAAAACTTTTTTTGACCTACTTTTTATTTTTATATATAATATTTTTAAATGGCTCTGTTAATTATTAATTATTTTTTTAAATTGGGAACTCTTGAATTTGCAGTTCTGGTACTTCAGCTGGTGAAAGAAAACTGATGCCAACAATTAAGGAAGAGTTGGATCGTCGCCAGCTTCTATACAGCCTTCTCATGCCAGTTATGAACCTGTAAGTTTCATCTTTCAAATAATTGAGTCTTCCACATATACCATGTGCTTAATTAATGTGTTTTTGTTTTTACTCAGCGAAACCTTCAACTATTTATTAGGATAATATAGATAGTTTTCTTGATCAAACATTTAGAGTTTTTTTATTTATAACTGGAATTTTCAAATTATTATTGTTATTTTTTTTGAAGGAAATTATTGTAACAAAAACGGTAGTTAATATTCTTTTATCTTTATTTTACTAAAAAAAATTCTTTTACTTTTATGTACATTTTTATTTTTTTAGGTCATTAATTAAAAAAATACATCAAATTTTTAATTTATAAAACATAAAAAAAAATTACTTTAAAGTATTTCATTTGATGTGACCATTTTAATTTATAAAACATCAAAAAAAATTACTTTAAAGTATTTCATTTGATGTGACCATTACTAGTATATTGAATTTTTGTCTCATTTTTTTTTTTTAAAAAAGGAGGATCAAAGGCCCAACGTTATTTTATCTCTATAAAAGGAAAATCGATCTGAAATTTTTAATAAATTTCATACTAATATTTCCATATTTCTAAAGTATAAACAATACTTAATTTTTTTTTTTTTGTATAAAGATAGTTAAAATTAATTACTGTATTTGTGCTAAGTGCTAAAAAGGGTTATTATTTTGAATGGAACAGTTATGTACCAGGCTTGGACAAAGGAAAAGGCTTATACTTTTTGTTTGTGAAGTCAGAAACAAGGACACCAGGTGGTTTATTGGCCCGCCCAGTTCTCACAAGTTACTACAAAAGTGAACATTTCAAAACCCGACCCTTTGACCCGTACAATGTCTACACAAGTCCAAATGAAGCCATTCTCTGCCCCGACTCATTCCAAAGCATGTATACTCAAATGCTATGTGGACTCATAGAACGCAACCAAGTCCTCCGCCTCGGCGCTGTCTTTGCCTCTGGTCTTCTCCGTGCAATTAGGTTCCTTCAGCTCAATTGGGCCGAACTAGCCCACGACATTCAAACCGGGACCTTAAATCCTAAAATCACTGACCAAAATATAAAAGATCACATGAAACATTTTATCAAACCCGACCCGAAATTGGCATCATTTATGGTGCAAGAATGCTCAAATGAAAATTGGGAAGGAATAATCACAAGGATTTGGCCTAACACCAAATATTTAGATGTCATTGTAACTGGTGCTATGGCTCAATACATTCCAACACTTAATTACTACAGTGGTGGGTTACCTCTTTCATGTACTATGTATGCTTCCTCAGAATGCTACTTCGGACTTAACCTTAATCCAATGTGCAAACCATCTGAGGTTTCATACACCATCATGCCAAACATGGCCTACTTTGAATTCCTACCTCACGAATCAGGGCCAACTAGAACTGTTGGCCTTACTGAGGTGGAGGTTGGAAAAGAGTATGAGCTTGTGATCACTACCTACGCCGGATTGAACCGTTACAGAGTTGGTGACATTCTCCGTGTCACCGGGTTTCATAACTCAGCACCACAATTCCATTTTGTGCGTCGAAAGAATGTGTTGCTTAGTATTGACTCGGATAAAACAGATGAGTCAGAGCTACAAAAAGCAGTGGAGAATGCTTCAAAGTTGCTTTCTGAGTTTAACACGAGTGTGGTTGAGTACACGAGTTATGCAGACACGGAGACCATACCAGGTCATTATGTGATATATTGGGAGTTGTTGACAAAAGCAGACTCCCCGAGTCATGAGGTGTTGAATAGGTGTTGTTTGGAAATGGAGCAATCGTTGAATTCTGTTTATAGGCAATGTAGGGTTGCGGATCATTCAATTGGACCATTGGAGATAAGGGTTGTGAAGAGTGGAACTTTTGAGGAGCTTATGGATTATGCAATCTCAAGAGGTGCTTCAATAAATCAATATAAAGTTCCAAGGTGTGTTAATTTTACTCCTATAATGGAGCTTTTGGACTCTAGGGTGGTCTCTGTTCACTTTAGCCAAGATTTGCCACATTGGACCCCTGAAAGGATAAGGTGATTTAATAGATTAATTTTGACATTTGGGCTTACTGGGTAGCTTTAGATTTTGTTCTTTTGCAATTTGTATCTTCTTTTGGTTGATGAAATGTATAGGAAGGATTATTTGAGGAGAGTCTTATGTGAGAAGATGGATTAG
Protein sequence

>MS.gene78774.t1

MAVDSTISSPLGPPACDKDAKALRFIEEMTRNADAVQERVLAEILSRNAETEYLKRFKLNGAIDRETFKTKIPVITYDDVQPEIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPFDPYNVYTSPNEAILCPDSFQSMYTQMLCGLIERNQVLRLGAVFASGLLRAIRFLQLNWAELAHDIQTGTLNPKITDQNIKDHMKHFIKPDPKLASFMVQECSNENWEGIITRIWPNTKYLDVIVTGAMAQYIPTLNYYSGGLPLSCTMYASSECYFGLNLNPMCKPSEVSYTIMPNMAYFEFLPHESGPTRTVGLTEVEVGKEYELVITTYAGLNRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASKLLSEFNTSVVEYTSYADTETIPGHYVIYWELLTKADSPSHEVLNRCCLEMEQSLNSVYRQCRVADHSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSQDLPHWTPERIRKDYLRRVLCEKMD