AlfalfaGEDB | MS.gene36841

M. sativa cultivar XinJiangDaYe / MS.gene36841

KEGG: K14487
GO: -
PFAM: PF03321.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36841.t1	XP_013445678.1	99.5	606	3	0	1	606	1	606	0.00E+00	1234.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36841.t1	Q9LSQ4	80.8	609	110	1	1	602	1	609	6.2e-300	1030.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36841.t1	A0A072TQB1	99.5	606	3	0	1	606	1	606	0.0e+00	1234.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene36841	-0.841384	4.91E-58	-1.69E-46
MS.gene049222	MS.gene36841	-0.812857	3.43E-51	-1.69E-46
MS.gene049285	MS.gene36841	-0.801556	8.52E-49	-1.69E-46
MS.gene04932	MS.gene36841	0.806584	7.66E-50	-1.69E-46
MS.gene049320	MS.gene36841	-0.81974	9.91E-53	-1.69E-46
MS.gene049633	MS.gene36841	-0.849144	3.91E-60	-1.69E-46
MS.gene050170	MS.gene36841	-0.84283	2.03E-58	-1.69E-46
MS.gene050323	MS.gene36841	-0.824139	9.49E-54	-1.69E-46
MS.gene050326	MS.gene36841	0.809682	1.68E-50	-1.69E-46
MS.gene050328	MS.gene36841	0.811472	6.88E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene050633	MS.gene36841	PPI
MS.gene25516	MS.gene36841	PPI
MS.gene36841	MS.gene86023	PPI
MS.gene36841	MS.gene25516	PPI
MS.gene36841	MS.gene045936	PPI
MS.gene36841	MS.gene79751	PPI
MS.gene36841	MS.gene046366	PPI
MS.gene36841	MS.gene59582	PPI
MS.gene36841	MS.gene053964	PPI
MS.gene36841	MS.gene41352	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36841.t1	MTR_8g467000	99.505	606	3	0	1	606	1	606	0.0	1251
MS.gene36841.t1	MTR_2g081860	80.865	601	112	2	8	605	7	607	0.0	1018
MS.gene36841.t1	MTR_4g045903	69.839	620	158	6	1	602	1	609	0.0	907
MS.gene36841.t1	MTR_0035s0150	63.636	594	198	3	4	597	9	584	0.0	802
MS.gene36841.t1	MTR_5g016320	62.755	588	208	3	16	601	22	600	0.0	777
MS.gene36841.t1	MTR_1g088765	53.000	600	267	6	7	597	3	596	0.0	642
MS.gene36841.t1	MTR_1g088765	55.022	458	193	5	147	597	1	452	1.07e-179	516
MS.gene36841.t1	MTR_8g027970	36.700	594	348	7	1	589	1	571	9.95e-132	398
MS.gene36841.t1	MTR_8g027965	36.615	579	345	7	15	589	11	571	2.05e-131	397
MS.gene36841.t1	MTR_8g027955	36.097	579	348	7	15	589	18	578	2.27e-131	397

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene36841.t1	AT5G54510	80.788	609	110	1	1	602	1	609	1046
MS.gene36841.t1	AT4G27260	80.131	609	114	1	1	602	1	609	1040
MS.gene36841.t1	AT2G14960	63.333	600	199	3	4	601	9	589	798
MS.gene36841.t1	AT4G37390	62.626	594	210	5	12	601	18	603	785
MS.gene36841.t1	AT2G23170	61.960	602	210	6	4	601	9	595	773
MS.gene36841.t1	AT1G59500	59.832	595	219	6	12	601	18	597	736
MS.gene36841.t1	AT1G28130	56.757	592	243	8	18	597	14	604	699
MS.gene36841.t1	AT2G47750	52.203	590	264	8	14	597	8	585	615
MS.gene36841.t1	AT1G23160	48.983	590	274	5	9	589	6	577	580
MS.gene36841.t1	AT5G13360	49.239	591	276	7	14	595	88	663	573

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Find 116 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGCAAGTTTAGGATC+AGG	0.419446	8.4:-43870922	None:intergenic
AAATCTGAGGCTAAAACACC+TGG	0.603615	8.4:+43870568	MS.gene36841:CDS
AAATGTCCAAAGTGGGCTCC+TGG	0.483198	8.4:+43872231	MS.gene36841:CDS
AACAACACACACCATGCCTG+AGG	0.659606	8.4:+43869849	None:intergenic
AATAGCCCTTATAAAACCAG+AGG	0.675707	8.4:-43870788	None:intergenic
AATTCAAAGTAGCACATGGT+AGG	0.583971	8.4:-43871180	None:intergenic
AATTGAAGCACCTAAACTAA+TGG	0.431562	8.4:-43872121	None:intergenic
ACACATCACCAACTCGGTAA+CGG	0.631028	8.4:-43871702	None:intergenic
ACACCATTACTTCTATTCAC+AGG	0.573990	8.4:-43871207	None:intergenic
ACATCCACATACTTGGTATT+AGG	0.400630	8.4:-43871000	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTTGAGTCAGTAATTAA+AGG	-	chr8.4:43870874-43870893	None:intergenic	30.0%
CAAAAATTCAAAGTAGCACA+TGG	-	chr8.4:43871187-43871206	None:intergenic	30.0%
CTGAGTGTAGTAAAAATTCT+TGG	+	chr8.4:43870953-43870972	MS.gene36841:CDS	30.0%
CTGTTGAGTCAGTAATTAAA+GGG	-	chr8.4:43870873-43870892	None:intergenic	30.0%
CTTTGCAATGATATTAGAAC+TGG	+	chr8.4:43870838-43870857	MS.gene36841:CDS	30.0%
TAATATATAGAACCAGAGGA+AGG	-	chr8.4:43870199-43870218	None:intergenic	30.0%
TCAACAAATGTTGATGTAAG+TGG	-	chr8.4:43870270-43870289	None:intergenic	30.0%
TCTTTCTCATTAAGAGATCT+AGG	-	chr8.4:43871252-43871271	None:intergenic	30.0%
TGAACAGAACAAAAAAATCC+TGG	+	chr8.4:43869894-43869913	MS.gene36841:CDS	30.0%
TGGATAAAATCAGCAAGTTT+AGG	-	chr8.4:43870931-43870950	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	43869862	43872281	43869862	ID=MS.gene36841
chr8.4	mRNA	43869862	43872281	43869862	ID=MS.gene36841.t1;Parent=MS.gene36841
chr8.4	exon	43869862	43870166	43869862	ID=MS.gene36841.t1.exon1;Parent=MS.gene36841.t1
chr8.4	CDS	43869862	43870166	43869862	ID=cds.MS.gene36841.t1;Parent=MS.gene36841.t1
chr8.4	exon	43870417	43871345	43870417	ID=MS.gene36841.t1.exon2;Parent=MS.gene36841.t1
chr8.4	CDS	43870417	43871345	43870417	ID=cds.MS.gene36841.t1;Parent=MS.gene36841.t1
chr8.4	exon	43871695	43872281	43871695	ID=MS.gene36841.t1.exon3;Parent=MS.gene36841.t1
chr8.4	CDS	43871695	43872281	43871695	ID=cds.MS.gene36841.t1;Parent=MS.gene36841.t1

Gene Sequence

>MS.gene36841

ATGCCTGAGGCACCTAGAGGCTACAACCTTGTTGAACAGAACAAAAAAATCCTGGACTTCATTGAGGATGTTACCTCAAACGCTGACCAAGTTCAACAAAAGGTTCTCTCAGAAATTCTGTCTCGCAATGCAAACGTTGAATATCTTAAAAGATATGATCTCAATGGTCACACAGACCGTGACACTTTCAAAAAACTCTTGCCTGTTATTTCATATGAAGATATTCAGCCTGATATTGACCGTATCTCCAATGGTGACACCTCTCCTATCCTTTGCTCCAAACCCATTTCCGAGTTTCTCACTAGGTTCGTCTTCATACATACATACAAATAATCCTTCCTCTGGTTCTATATATTAGACAAGGTTGGTCATCAAAAGTTAATGTATATGGTCCAAAATTTAAAACCACTTACATCAACATTTGTTGATCTAACTTTTTCTTATATAAAGGACCAAGGAGAGTAACATATATAAATAGTTTATTTTGTGTTAAATTTCAATTTCAATACAAGAGAAAAAATATTGATAGTTTTTTGTTAAATTGATTTTTTGCAGTTCTGGGACATCTGGAGGTGAGAGAAAGTTGATGCCAACAATTGAAGACGAGTTAGGGAGGAGAAGTTTGTTGTATAGTTTATTGATGCCAGTGATGAGCCAGTTTGTTCCTGGTTTAGAAAAAGGGAAAGGAATGTACCTAATGTTTATAAAATCTGAGGCTAAAACACCTGGTGGAATTGTAGCTAGGCCAGTTTTAACTAGCTATTACAAAAGTTCCTATTTTAGAGATAGACCTTATGACCCTTACACAAACTACACAAGCCCAAATGAAACTGTACTGTGTCCTGATTCATACCAAAGCATGTATTCTCAACTGCTTTGTGGTCTTTGTCAAAACAAAGAGGTTTTAAGGGTTGGTGCTGTATTTGCCTCTGGTTTTATAAGGGCTATTAGGTTCCTTGAGAAACATTGGAACCTTCTTTGCAATGATATTAGAACTGGTACTGTTAACCCTTTAATTACTGACTCAACAGTGAGAGATTCTGTTATGAAGATCCTTAAACCTGATCCTAAACTTGCTGATTTTATCCAAACTGAGTGTAGTAAAAATTCTTGGCAGGGGATAATTACTAGGCTTTGGCCTAATACCAAGTATGTGGATGTTATTGTGACTGGAACAATGTCACAGTATATTCCTATTTTGGATCATTATAGCAATGGTTTACCACTTGTTTGCACTATGTATGCTTCTAGTGAATGTTACTTTGGTGTTAACTTGAACCCTCTTTGTCAACCTAGTGAAGTGTCTTACACTCTTATTCCTACCATGTGCTACTTTGAATTTTTGCCTGTGAATAGAAGTAATGGTGTCACTGATTCTCTTCACACACCTAGATCTCTTAATGAGAAAGAGCAGAAAGAGTTGGTTGAACTTGTTGATGTCAAACTTGGTCAAGAATATGAGCTTGTTGTCACTACTTATGCCGGTAAGACTAAGATTCTTCATGTCACTTTAATTTCATTTCTTTTTTTTTTTACCAAACTTTTAATTTAATTTTTCATTTTTAAACATTTTATTTTATGATATTTATACTTATGCAACCTCAATTGCTACAATCACGTGGTCGATAAAACGTCAAAATCACTTTCGCACTGTGATTTTGTTGAAGCTTTAAAATGTAACTTTTGTCAGAATCACAATAGTTCACCGTGATTCTGTCTATCTCACTGTTATGAAATTTAGATATGATGTGTAACTGTAAACAGATTTGGAACAGAACAATATTTTTTTGTTTCGTTTGCTGATTTATTTGTGTTTGTCAATTTTTTTCTTAGGACTATACCGTTACCGAGTTGGTGATGTGTTGAAGGTAGCTGGATTCAAGAACAAAGCACCGCAATTCAACTTCGTGTGCCGAAAAAATGTGGTATTGAGCATTGATTCAGACAAAACTGATGAAGTTGAGCTTCAAAATGCAATGGCAAATGCTATAACACATTTAGTACCATTCGATGCAACCGTGTCCGAATACACTAGCTATGCAGACACAACAACAATTCCAGGTCACTATGTCCTCTACTGGGAACTCACTCTGAACAAATCAACACAAATTCCACCTTGTGTTTTTGAAGATTGCTGCTTAACAATTGAAGAATCACTCAACAGCGTGTATCGACAGGGCCGCGTCTCGGACAAATCTATCGGTCCGCTTGAGATCAAGATTGTTGAACAGGGCACTTTTGATAAGCTAATGGATTATGCCATTAGTTTAGGTGCTTCAATTAATCAGTACAAGACACCAAGGTGTGTGAAGTTTGCACCTGTTGTTGAACTCTTGAACTCAAGGGTAATGTCAAGTTACTTTAGCCCTAAATGTCCAAAGTGGGCTCCTGGTCATAAGCAATGGATCAATCAGAATTAA

Protein sequence

>MS.gene36841.t1

MPEAPRGYNLVEQNKKILDFIEDVTSNADQVQQKVLSEILSRNANVEYLKRYDLNGHTDRDTFKKLLPVISYEDIQPDIDRISNGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEDELGRRSLLYSLLMPVMSQFVPGLEKGKGMYLMFIKSEAKTPGGIVARPVLTSYYKSSYFRDRPYDPYTNYTSPNETVLCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWNLLCNDIRTGTVNPLITDSTVRDSVMKILKPDPKLADFIQTECSKNSWQGIITRLWPNTKYVDVIVTGTMSQYIPILDHYSNGLPLVCTMYASSECYFGVNLNPLCQPSEVSYTLIPTMCYFEFLPVNRSNGVTDSLHTPRSLNEKEQKELVELVDVKLGQEYELVVTTYAGLYRYRVGDVLKVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAMANAITHLVPFDATVSEYTSYADTTTIPGHYVLYWELTLNKSTQIPPCVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKLMDYAISLGASINQYKTPRCVKFAPVVELLNSRVMSSYFSPKCPKWAPGHKQWINQN