Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36841.t1 | XP_013445678.1 | 99.5 | 606 | 3 | 0 | 1 | 606 | 1 | 606 | 0.00E+00 | 1234.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36841.t1 | Q9LSQ4 | 80.8 | 609 | 110 | 1 | 1 | 602 | 1 | 609 | 6.2e-300 | 1030.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36841.t1 | A0A072TQB1 | 99.5 | 606 | 3 | 0 | 1 | 606 | 1 | 606 | 0.0e+00 | 1234.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene36841 | -0.841384 | 4.91E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene36841 | -0.812857 | 3.43E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene36841 | -0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene36841 | -0.81974 | 9.91E-53 | -1.69E-46 |
| MS.gene04932 | MS.gene36841 | 0.806584 | 7.66E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene36841 | -0.849144 | 3.91E-60 | -1.69E-46 |
| MS.gene050170 | MS.gene36841 | -0.84283 | 2.03E-58 | -1.69E-46 |
| MS.gene050323 | MS.gene36841 | -0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene050326 | MS.gene36841 | 0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene050328 | MS.gene36841 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene36841 | 0.861238 | 1.18E-63 | -1.69E-46 |
| MS.gene050444 | MS.gene36841 | -0.829622 | 4.64E-55 | -1.69E-46 |
| MS.gene050577 | MS.gene36841 | -0.83003 | 3.69E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene36841 | -0.82825 | 9.98E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene36841 | -0.824337 | 8.52E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene36841 | -0.800912 | 1.15E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene36841 | -0.818943 | 1.51E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene36841 | -0.805806 | 1.12E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene36841 | -0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene051317 | MS.gene36841 | -0.826953 | 2.04E-54 | -1.69E-46 |
| MS.gene051439 | MS.gene36841 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene051517 | MS.gene36841 | 0.811303 | 7.49E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene36841 | 0.836406 | 9.53E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene36841 | -0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene052129 | MS.gene36841 | 0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene36841 | -0.814925 | 1.20E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene36841 | -0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene36841 | 0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene36841 | -0.803872 | 2.83E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene36841 | -0.812655 | 3.80E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene36841 | -0.81071 | 1.01E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene36841 | -0.801073 | 1.07E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene36841 | -0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene36841 | -0.816375 | 5.71E-52 | -1.69E-46 |
| MS.gene053480 | MS.gene36841 | -0.821418 | 4.08E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene36841 | -0.814363 | 1.60E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene36841 | -0.82367 | 1.22E-53 | -1.69E-46 |
| MS.gene054344 | MS.gene36841 | -0.827668 | 1.38E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene36841 | -0.852263 | 5.18E-61 | -1.69E-46 |
| MS.gene054884 | MS.gene36841 | 0.819725 | 9.99E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene36841 | -0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene36841 | 0.848228 | 7.01E-60 | -1.69E-46 |
| MS.gene055362 | MS.gene36841 | -0.80775 | 4.34E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene36841 | -0.823332 | 1.47E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene36841 | -0.80757 | 4.74E-50 | -1.69E-46 |
| MS.gene055729 | MS.gene36841 | 0.803291 | 3.74E-49 | -1.69E-46 |
| MS.gene055730 | MS.gene36841 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene055731 | MS.gene36841 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene36841 | -0.843656 | 1.23E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene36841 | -0.826289 | 2.94E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene36841 | -0.842888 | 1.96E-58 | -1.69E-46 |
| MS.gene05589 | MS.gene36841 | -0.852915 | 3.37E-61 | -1.69E-46 |
| MS.gene056266 | MS.gene36841 | -0.800036 | 1.74E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene36841 | -0.823128 | 1.64E-53 | -1.69E-46 |
| MS.gene056590 | MS.gene36841 | 0.824962 | 6.07E-54 | -1.69E-46 |
| MS.gene056591 | MS.gene36841 | 0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene056618 | MS.gene36841 | 0.815196 | 1.05E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene36841 | -0.806572 | 7.71E-50 | -1.69E-46 |
| MS.gene056688 | MS.gene36841 | 0.812434 | 4.25E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene36841 | -0.823136 | 1.63E-53 | -1.69E-46 |
| MS.gene056694 | MS.gene36841 | 0.830433 | 2.94E-55 | -1.69E-46 |
| MS.gene056697 | MS.gene36841 | 0.859706 | 3.44E-63 | -1.69E-46 |
| MS.gene056856 | MS.gene36841 | 0.812129 | 4.95E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene36841 | -0.802066 | 6.69E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene36841 | -0.805825 | 1.11E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene36841 | 0.809263 | 2.06E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene36841 | 0.854736 | 1.01E-61 | -1.69E-46 |
| MS.gene05837 | MS.gene36841 | -0.807666 | 4.52E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene36841 | 0.849481 | 3.15E-60 | -1.69E-46 |
| MS.gene058419 | MS.gene36841 | -0.842411 | 2.63E-58 | -1.69E-46 |
| MS.gene058452 | MS.gene36841 | 0.805263 | 1.45E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene36841 | -0.821784 | 3.36E-53 | -1.69E-46 |
| MS.gene058603 | MS.gene36841 | 0.800919 | 1.15E-48 | -1.69E-46 |
| MS.gene058838 | MS.gene36841 | -0.848958 | 4.40E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene36841 | -0.833734 | 4.50E-56 | -1.69E-46 |
| MS.gene05914 | MS.gene36841 | -0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene36841 | 0.832033 | 1.19E-55 | -1.69E-46 |
| MS.gene059667 | MS.gene36841 | -0.807083 | 6.01E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene36841 | -0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene36841 | -0.806769 | 7.00E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene36841 | 0.841759 | 3.91E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene36841 | -0.838378 | 2.98E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene36841 | -0.800575 | 1.35E-48 | -1.69E-46 |
| MS.gene060823 | MS.gene36841 | 0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene36841 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene36841 | -0.834439 | 2.99E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene36841 | 0.881016 | 3.41E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36841 | MS.gene86023 | PPI |
| MS.gene36841 | MS.gene25516 | PPI |
| MS.gene36841 | MS.gene045936 | PPI |
| MS.gene36841 | MS.gene79751 | PPI |
| MS.gene36841 | MS.gene046366 | PPI |
| MS.gene59583 | MS.gene36841 | PPI |
| MS.gene36841 | MS.gene59582 | PPI |
| MS.gene050633 | MS.gene36841 | PPI |
| MS.gene36841 | MS.gene053964 | PPI |
| MS.gene95295 | MS.gene36841 | PPI |
| MS.gene25516 | MS.gene36841 | PPI |
| MS.gene36841 | MS.gene41352 | PPI |
| MS.gene36841 | MS.gene025922 | PPI |
| MS.gene36841 | MS.gene95297 | PPI |
| MS.gene36841 | MS.gene79749 | PPI |
| MS.gene36841 | MS.gene43375 | PPI |
| MS.gene36841 | MS.gene95299 | PPI |
| MS.gene36841 | MS.gene024458 | PPI |
| MS.gene36841 | MS.gene000373 | PPI |
| MS.gene36841 | MS.gene99230 | PPI |
| MS.gene36841 | MS.gene34650 | PPI |
| MS.gene36841 | MS.gene22809 | PPI |
| MS.gene36841 | MS.gene78774 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36841.t1 | MTR_8g467000 | 99.505 | 606 | 3 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1251 |
| MS.gene36841.t1 | MTR_2g081860 | 80.865 | 601 | 112 | 2 | 8 | 605 | 7 | 607 | 0.0 | 1018 |
| MS.gene36841.t1 | MTR_4g045903 | 69.839 | 620 | 158 | 6 | 1 | 602 | 1 | 609 | 0.0 | 907 |
| MS.gene36841.t1 | MTR_0035s0150 | 63.636 | 594 | 198 | 3 | 4 | 597 | 9 | 584 | 0.0 | 802 |
| MS.gene36841.t1 | MTR_5g016320 | 62.755 | 588 | 208 | 3 | 16 | 601 | 22 | 600 | 0.0 | 777 |
| MS.gene36841.t1 | MTR_1g088765 | 53.000 | 600 | 267 | 6 | 7 | 597 | 3 | 596 | 0.0 | 642 |
| MS.gene36841.t1 | MTR_1g088765 | 55.022 | 458 | 193 | 5 | 147 | 597 | 1 | 452 | 1.07e-179 | 516 |
| MS.gene36841.t1 | MTR_8g027970 | 36.700 | 594 | 348 | 7 | 1 | 589 | 1 | 571 | 9.95e-132 | 398 |
| MS.gene36841.t1 | MTR_8g027965 | 36.615 | 579 | 345 | 7 | 15 | 589 | 11 | 571 | 2.05e-131 | 397 |
| MS.gene36841.t1 | MTR_8g027955 | 36.097 | 579 | 348 | 7 | 15 | 589 | 18 | 578 | 2.27e-131 | 397 |
| MS.gene36841.t1 | MTR_8g027920 | 35.456 | 581 | 349 | 8 | 15 | 589 | 11 | 571 | 6.95e-128 | 388 |
| MS.gene36841.t1 | MTR_7g117110 | 36.442 | 579 | 348 | 10 | 16 | 589 | 12 | 575 | 1.15e-127 | 387 |
| MS.gene36841.t1 | MTR_0102s0060 | 34.983 | 586 | 359 | 7 | 15 | 589 | 19 | 593 | 3.70e-126 | 384 |
| MS.gene36841.t1 | MTR_7g117110 | 35.162 | 401 | 248 | 6 | 16 | 414 | 12 | 402 | 1.02e-79 | 258 |
| MS.gene36841.t1 | MTR_7g094190 | 29.897 | 582 | 375 | 14 | 14 | 579 | 4 | 568 | 3.97e-75 | 251 |
| MS.gene36841.t1 | MTR_7g094190 | 32.170 | 401 | 249 | 8 | 188 | 579 | 82 | 468 | 6.96e-62 | 213 |
| MS.gene36841.t1 | MTR_8g037720 | 34.604 | 341 | 182 | 7 | 255 | 589 | 126 | 431 | 7.23e-61 | 209 |
| MS.gene36841.t1 | MTR_8g037720 | 40.404 | 99 | 59 | 0 | 16 | 114 | 3 | 101 | 4.93e-17 | 84.3 |
| MS.gene36841.t1 | MTR_1g047730 | 38.290 | 269 | 139 | 5 | 324 | 589 | 114 | 358 | 6.66e-53 | 185 |
| MS.gene36841.t1 | MTR_7g094330 | 30.769 | 234 | 122 | 4 | 188 | 420 | 82 | 276 | 3.28e-30 | 120 |
| MS.gene36841.t1 | MTR_3g023280 | 53.211 | 109 | 49 | 1 | 491 | 597 | 19 | 127 | 3.43e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36841.t1 | AT5G54510 | 80.788 | 609 | 110 | 1 | 1 | 602 | 1 | 609 | 0.0 | 1046 |
| MS.gene36841.t1 | AT4G27260 | 80.131 | 609 | 114 | 1 | 1 | 602 | 1 | 609 | 0.0 | 1040 |
| MS.gene36841.t1 | AT2G14960 | 63.333 | 600 | 199 | 3 | 4 | 601 | 9 | 589 | 0.0 | 798 |
| MS.gene36841.t1 | AT4G37390 | 62.626 | 594 | 210 | 5 | 12 | 601 | 18 | 603 | 0.0 | 785 |
| MS.gene36841.t1 | AT2G23170 | 61.960 | 602 | 210 | 6 | 4 | 601 | 9 | 595 | 0.0 | 773 |
| MS.gene36841.t1 | AT1G59500 | 59.832 | 595 | 219 | 6 | 12 | 601 | 18 | 597 | 0.0 | 736 |
| MS.gene36841.t1 | AT1G28130 | 56.757 | 592 | 243 | 8 | 18 | 597 | 14 | 604 | 0.0 | 699 |
| MS.gene36841.t1 | AT2G47750 | 52.203 | 590 | 264 | 8 | 14 | 597 | 8 | 585 | 0.0 | 615 |
| MS.gene36841.t1 | AT1G23160 | 48.983 | 590 | 274 | 5 | 9 | 589 | 6 | 577 | 0.0 | 580 |
| MS.gene36841.t1 | AT5G13360 | 49.239 | 591 | 276 | 7 | 14 | 595 | 88 | 663 | 0.0 | 573 |
| MS.gene36841.t1 | AT5G13370 | 48.900 | 591 | 279 | 8 | 14 | 595 | 10 | 586 | 0.0 | 572 |
| MS.gene36841.t1 | AT5G13360 | 49.239 | 591 | 276 | 7 | 14 | 595 | 10 | 585 | 0.0 | 572 |
| MS.gene36841.t1 | AT5G13360 | 49.239 | 591 | 276 | 7 | 14 | 595 | 10 | 585 | 0.0 | 572 |
| MS.gene36841.t1 | AT5G13320 | 47.834 | 577 | 276 | 4 | 21 | 589 | 30 | 589 | 0.0 | 565 |
| MS.gene36841.t1 | AT1G28130 | 59.653 | 461 | 176 | 6 | 147 | 597 | 1 | 461 | 0.0 | 565 |
| MS.gene36841.t1 | AT5G13320 | 47.834 | 577 | 276 | 4 | 21 | 589 | 15 | 574 | 0.0 | 564 |
| MS.gene36841.t1 | AT5G13320 | 47.834 | 577 | 276 | 4 | 21 | 589 | 15 | 574 | 0.0 | 564 |
| MS.gene36841.t1 | AT5G13380 | 46.678 | 587 | 289 | 8 | 18 | 595 | 44 | 615 | 0.0 | 548 |
| MS.gene36841.t1 | AT5G13350 | 46.701 | 591 | 292 | 7 | 15 | 596 | 11 | 587 | 0.0 | 544 |
| MS.gene36841.t1 | AT5G13350 | 46.701 | 591 | 292 | 7 | 15 | 596 | 11 | 587 | 0.0 | 544 |
| MS.gene36841.t1 | AT1G48660 | 44.560 | 579 | 299 | 5 | 21 | 593 | 10 | 572 | 0.0 | 524 |
| MS.gene36841.t1 | AT5G51470 | 45.927 | 577 | 291 | 4 | 19 | 591 | 14 | 573 | 3.67e-180 | 522 |
| MS.gene36841.t1 | AT1G48660 | 44.714 | 577 | 298 | 5 | 21 | 593 | 10 | 569 | 5.17e-180 | 521 |
| MS.gene36841.t1 | AT1G48670 | 43.772 | 578 | 253 | 7 | 21 | 593 | 11 | 521 | 1.68e-160 | 470 |
| MS.gene36841.t1 | AT5G51470 | 45.272 | 497 | 252 | 3 | 99 | 591 | 3 | 483 | 2.62e-148 | 437 |
| MS.gene36841.t1 | AT1G48670 | 50.236 | 424 | 192 | 3 | 174 | 593 | 2 | 410 | 1.53e-145 | 427 |
| MS.gene36841.t1 | AT2G46370 | 37.919 | 596 | 338 | 12 | 6 | 589 | 8 | 583 | 1.66e-133 | 403 |
| MS.gene36841.t1 | AT2G46370 | 38.554 | 581 | 330 | 11 | 16 | 589 | 12 | 572 | 2.18e-133 | 402 |
| MS.gene36841.t1 | AT2G46370 | 38.554 | 581 | 330 | 11 | 16 | 589 | 12 | 572 | 2.18e-133 | 402 |
| MS.gene36841.t1 | AT4G03400 | 34.701 | 585 | 362 | 5 | 17 | 589 | 11 | 587 | 6.00e-122 | 373 |
| MS.gene36841.t1 | AT4G03400 | 34.701 | 585 | 362 | 5 | 17 | 589 | 11 | 587 | 6.00e-122 | 373 |
| MS.gene36841.t1 | AT2G46370 | 38.943 | 511 | 287 | 9 | 84 | 589 | 3 | 493 | 9.58e-117 | 357 |
| MS.gene36841.t1 | AT1G48690 | 38.919 | 185 | 109 | 2 | 21 | 205 | 10 | 190 | 1.47e-38 | 140 |
Find 116 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACAGTATATTCCTATTT+TGG | 0.111812 | 8.4:+43871041 | MS.gene36841:CDS |
| GGAGCCCACTTTGGACATTT+AGG | 0.154824 | 8.4:-43872228 | None:intergenic |
| CAAGTTTAGGATCAGGTTTA+AGG | 0.254241 | 8.4:-43870915 | None:intergenic |
| TTTGTTCCTGGTTTAGAAAA+AGG | 0.255175 | 8.4:+43870520 | MS.gene36841:CDS |
| ATGGATTATGCCATTAGTTT+AGG | 0.291005 | 8.4:+43872111 | MS.gene36841:CDS |
| TGGATAAAATCAGCAAGTTT+AGG | 0.292869 | 8.4:-43870928 | None:intergenic |
| TTGCTATAATGATCCAAAAT+AGG | 0.297088 | 8.4:-43871054 | None:intergenic |
| ACTGTTGAGTCAGTAATTAA+AGG | 0.298239 | 8.4:-43870871 | None:intergenic |
| GAGCCCACTTTGGACATTTA+GGG | 0.311971 | 8.4:-43872227 | None:intergenic |
| ATAAGGTCTATCTCTAAAAT+AGG | 0.318744 | 8.4:-43870635 | None:intergenic |
| GTGATGAGCCAGTTTGTTCC+TGG | 0.324174 | 8.4:+43870508 | MS.gene36841:CDS |
| GGACACAGTACAGTTTCATT+TGG | 0.346171 | 8.4:-43870682 | None:intergenic |
| CCAACAATTGAAGACGAGTT+AGG | 0.350482 | 8.4:+43870451 | MS.gene36841:CDS |
| TGAGATCAAGATTGTTGAAC+AGG | 0.353995 | 8.4:+43872071 | MS.gene36841:CDS |
| CCTAACTCGTCTTCAATTGT+TGG | 0.355115 | 8.4:-43870451 | None:intergenic |
| CTTGGCAGGGGATAATTACT+AGG | 0.356717 | 8.4:+43870971 | MS.gene36841:CDS |
| TTGTAATAGCTAGTTAAAAC+TGG | 0.369819 | 8.4:-43870607 | None:intergenic |
| TCTTTCTCATTAAGAGATCT+AGG | 0.375377 | 8.4:-43871249 | None:intergenic |
| ATATCTTCATATGAAATAAC+AGG | 0.377500 | 8.4:-43870063 | None:intergenic |
| GGGCTTGTGTAGTTTGTGTA+AGG | 0.378276 | 8.4:-43870661 | None:intergenic |
| CTGTTGAGTCAGTAATTAAA+GGG | 0.382825 | 8.4:-43870870 | None:intergenic |
| AGGGGATAATTACTAGGCTT+TGG | 0.396785 | 8.4:+43870977 | MS.gene36841:CDS |
| ACATCCACATACTTGGTATT+AGG | 0.400630 | 8.4:-43871000 | None:intergenic |
| CCTAGTGAGAAACTCGGAAA+TGG | 0.402657 | 8.4:-43870145 | None:intergenic |
| GAGAAACTCGGAAATGGGTT+TGG | 0.402818 | 8.4:-43870139 | None:intergenic |
| CTTTGCAATGATATTAGAAC+TGG | 0.408730 | 8.4:+43870838 | MS.gene36841:CDS |
| GACACAGTACAGTTTCATTT+GGG | 0.411007 | 8.4:-43870681 | None:intergenic |
| GTTGGTGCTGTATTTGCCTC+TGG | 0.411899 | 8.4:+43870772 | MS.gene36841:CDS |
| ATGTATTCTCAACTGCTTTG+TGG | 0.413819 | 8.4:+43870721 | MS.gene36841:CDS |
| TTGAACTTGGTCAGCGTTTG+AGG | 0.418697 | 8.4:-43869935 | None:intergenic |
| AAATCAGCAAGTTTAGGATC+AGG | 0.419446 | 8.4:-43870922 | None:intergenic |
| TTTCTAAACCAGGAACAAAC+TGG | 0.423901 | 8.4:-43870516 | None:intergenic |
| TTGGAGATACGGTCAATATC+AGG | 0.424900 | 8.4:-43870090 | None:intergenic |
| TACATGCTTTGGTATGAATC+AGG | 0.429558 | 8.4:-43870703 | None:intergenic |
| CAGGTCACTATGTCCTCTAC+TGG | 0.430139 | 8.4:+43871920 | MS.gene36841:CDS |
| AATTGAAGCACCTAAACTAA+TGG | 0.431562 | 8.4:-43872121 | None:intergenic |
| GCAGTTGAGAATACATGCTT+TGG | 0.432411 | 8.4:-43870714 | None:intergenic |
| GCTTCTAGTGAATGTTACTT+TGG | 0.432831 | 8.4:+43871105 | MS.gene36841:CDS |
| GTCTGCATAGCTAGTGTATT+CGG | 0.433199 | 8.4:-43871884 | None:intergenic |
| CACAATAACATCCACATACT+TGG | 0.435316 | 8.4:-43871007 | None:intergenic |
| GCAGACACAACAACAATTCC+AGG | 0.444605 | 8.4:+43871901 | MS.gene36841:CDS |
| TTCTAATATCATTGCAAAGA+AGG | 0.447565 | 8.4:-43870834 | None:intergenic |
| CCGAGTTGGTGATGTGTTGA+AGG | 0.465454 | 8.4:+43871708 | MS.gene36841:CDS |
| GGTGATGTGTTGAAGGTAGC+TGG | 0.472026 | 8.4:+43871715 | MS.gene36841:CDS |
| CAACAATTGAAGACGAGTTA+GGG | 0.472679 | 8.4:+43870452 | MS.gene36841:CDS |
| AAATGTCCAAAGTGGGCTCC+TGG | 0.483198 | 8.4:+43872231 | MS.gene36841:CDS |
| TTAGGTTCCTTGAGAAACAT+TGG | 0.484372 | 8.4:+43870809 | MS.gene36841:CDS |
| ACTCAACAGCGTGTATCGAC+AGG | 0.486087 | 8.4:+43872017 | MS.gene36841:CDS |
| TTGTAGCCTCTAGGTGCCTC+AGG | 0.487179 | 8.4:-43869865 | None:intergenic |
| TAGTTTGTGTAAGGGTCATA+AGG | 0.487342 | 8.4:-43870652 | None:intergenic |
| TGAGAAAGAGCAGAAAGAGT+TGG | 0.487483 | 8.4:+43871263 | MS.gene36841:CDS |
| CGCTGACCAAGTTCAACAAA+AGG | 0.497019 | 8.4:+43869942 | MS.gene36841:CDS |
| TGCAGTTCTGGGACATCTGG+AGG | 0.497353 | 8.4:+43870412 | MS.gene36841:intron |
| GCCTCTAGGTGCCTCAGGCA+TGG | 0.502602 | 8.4:-43869860 | None:intergenic |
| CGGAAATGGGTTTGGAGCAA+AGG | 0.507191 | 8.4:-43870131 | None:intergenic |
| CTAGTGAGAAACTCGGAAAT+GGG | 0.511635 | 8.4:-43870144 | None:intergenic |
| TAACATCCTCAATGAAGTCC+AGG | 0.517548 | 8.4:-43869912 | None:intergenic |
| GTATCGACAGGGCCGCGTCT+CGG | 0.517767 | 8.4:+43872029 | MS.gene36841:CDS |
| AGGTGTCACCATTGGAGATA+CGG | 0.520760 | 8.4:-43870101 | None:intergenic |
| CTTAAAAGATATGATCTCAA+TGG | 0.521709 | 8.4:+43870006 | MS.gene36841:CDS |
| GAGTTCAAGAGTTCAACAAC+AGG | 0.523704 | 8.4:-43872180 | None:intergenic |
| GGACTATACCGTTACCGAGT+TGG | 0.523842 | 8.4:+43871694 | MS.gene36841:intron |
| GGAACAAACTGGCTCATCAC+TGG | 0.525232 | 8.4:-43870505 | None:intergenic |
| GATAGGAGAGGTGTCACCAT+TGG | 0.527208 | 8.4:-43870109 | None:intergenic |
| TATGTGGATGTTATTGTGAC+TGG | 0.529295 | 8.4:+43871012 | MS.gene36841:CDS |
| ATGGGTTTGGAGCAAAGGAT+AGG | 0.537304 | 8.4:-43870126 | None:intergenic |
| GAAGGTTCCAATGTTTCTCA+AGG | 0.537967 | 8.4:-43870816 | None:intergenic |
| GGCTTGTGTAGTTTGTGTAA+GGG | 0.539250 | 8.4:-43870660 | None:intergenic |
| TTGTTGAACTCTTGAACTCA+AGG | 0.540254 | 8.4:+43872184 | MS.gene36841:CDS |
| CTTGTTGTCACTACTTATGC+CGG | 0.541243 | 8.4:+43871324 | MS.gene36841:CDS |
| TCGGACACGGTTGCATCGAA+TGG | 0.543360 | 8.4:-43871865 | None:intergenic |
| CCATTTCCGAGTTTCTCACT+AGG | 0.547573 | 8.4:+43870145 | MS.gene36841:CDS |
| CGCGTCTCGGACAAATCTAT+CGG | 0.552359 | 8.4:+43872042 | MS.gene36841:CDS |
| GAACTTGTTGATGTCAAACT+TGG | 0.554297 | 8.4:+43871288 | MS.gene36841:CDS |
| TTATGACCAGGAGCCCACTT+TGG | 0.554897 | 8.4:-43872237 | None:intergenic |
| GGGCTCCTGGTCATAAGCAA+TGG | 0.566694 | 8.4:+43872244 | MS.gene36841:CDS |
| TTGGCCTAATACCAAGTATG+TGG | 0.569778 | 8.4:+43870996 | MS.gene36841:CDS |
| ACTTCACTAGGTTGACAAAG+AGG | 0.571857 | 8.4:-43871141 | None:intergenic |
| CTTCACTAGGTTGACAAAGA+GGG | 0.573620 | 8.4:-43871140 | None:intergenic |
| ACACCATTACTTCTATTCAC+AGG | 0.573990 | 8.4:-43871207 | None:intergenic |
| TTGCCTGTGAATAGAAGTAA+TGG | 0.577251 | 8.4:+43871204 | MS.gene36841:CDS |
| TGGTCTTTGTCAAAACAAAG+AGG | 0.579177 | 8.4:+43870741 | MS.gene36841:CDS |
| TTGATCCATTGCTTATGACC+AGG | 0.582743 | 8.4:-43872249 | None:intergenic |
| AATTCAAAGTAGCACATGGT+AGG | 0.583971 | 8.4:-43871180 | None:intergenic |
| TCAGAGTGAGTTCCCAGTAG+AGG | 0.584102 | 8.4:-43871933 | None:intergenic |
| GGTGCAAACTTCACACACCT+TGG | 0.586326 | 8.4:-43872159 | None:intergenic |
| CCTAATGTTTATAAAATCTG+AGG | 0.588832 | 8.4:+43870555 | MS.gene36841:CDS |
| TCAACAAGGTTGTAGCCTCT+AGG | 0.591413 | 8.4:-43869874 | None:intergenic |
| GATATTGACCGTATCTCCAA+TGG | 0.593412 | 8.4:+43870093 | MS.gene36841:CDS |
| TGTTGAACTCTTGAACTCAA+GGG | 0.593725 | 8.4:+43872185 | MS.gene36841:CDS |
| TCAACAATCTTGATCTCAAG+CGG | 0.595363 | 8.4:-43872066 | None:intergenic |
| AAATCTGAGGCTAAAACACC+TGG | 0.603615 | 8.4:+43870568 | MS.gene36841:CDS |
| CAGTAGAGGACATAGTGACC+TGG | 0.605308 | 8.4:-43871919 | None:intergenic |
| CCTTCAACACATCACCAACT+CGG | 0.608774 | 8.4:-43871708 | None:intergenic |
| CACCTGGTGGAATTGTAGCT+AGG | 0.610611 | 8.4:+43870584 | MS.gene36841:CDS |
| AGGTCACTATGTCCTCTACT+GGG | 0.614973 | 8.4:+43871921 | MS.gene36841:CDS |
| CGGCACACGAAGTTGAATTG+CGG | 0.616034 | 8.4:-43871754 | None:intergenic |
| GGCCTAGCTACAATTCCACC+AGG | 0.617990 | 8.4:-43870586 | None:intergenic |
| GCATACATAGTGCAAACAAG+TGG | 0.618340 | 8.4:-43871084 | None:intergenic |
| TTTGGAGCAAAGGATAGGAG+AGG | 0.620341 | 8.4:-43870121 | None:intergenic |
| TCTGAGGCTAAAACACCTGG+TGG | 0.620910 | 8.4:+43870571 | MS.gene36841:CDS |
| ACACATCACCAACTCGGTAA+CGG | 0.631028 | 8.4:-43871702 | None:intergenic |
| CTCAACAGCGTGTATCGACA+GGG | 0.631957 | 8.4:+43872018 | MS.gene36841:CDS |
| CGATAGATTTGTCCGAGACG+CGG | 0.631989 | 8.4:-43872041 | None:intergenic |
| TAGCCCTAAATGTCCAAAGT+GGG | 0.635686 | 8.4:+43872224 | MS.gene36841:CDS |
| CAATTGAAGACGAGTTAGGG+AGG | 0.639368 | 8.4:+43870455 | MS.gene36841:CDS |
| AGTTGAGCTTCAAAATGCAA+TGG | 0.645898 | 8.4:+43871819 | MS.gene36841:CDS |
| TTAGCCCTAAATGTCCAAAG+TGG | 0.647825 | 8.4:+43872223 | MS.gene36841:CDS |
| AACAACACACACCATGCCTG+AGG | 0.659606 | 8.4:+43869849 | None:intergenic |
| GACGAACCTAGTGAGAAACT+CGG | 0.661604 | 8.4:-43870151 | None:intergenic |
| AATAGCCCTTATAAAACCAG+AGG | 0.675707 | 8.4:-43870788 | None:intergenic |
| ATAGCTAGTGTATTCGGACA+CGG | 0.679053 | 8.4:-43871878 | None:intergenic |
| GAGATCAAGATTGTTGAACA+GGG | 0.686060 | 8.4:+43872072 | MS.gene36841:CDS |
| AGAGTGTAAGACACTTCACT+AGG | 0.687486 | 8.4:-43871153 | None:intergenic |
| TTAATCAGTACAAGACACCA+AGG | 0.718724 | 8.4:+43872142 | MS.gene36841:CDS |
| ACCATGCCTGAGGCACCTAG+AGG | 0.728145 | 8.4:+43869859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATTAAATTAAAAGTT+TGG | - | chr8.4:43871400-43871419 | None:intergenic | 10.0% |
| !!! | TCTAACTTTTTCTTATATAA+AGG | + | chr8.4:43870290-43870309 | MS.gene36841:intron | 15.0% |
| !! | ATATCTTCATATGAAATAAC+AGG | - | chr8.4:43870066-43870085 | None:intergenic | 20.0% |
| !! | TCATCAAAAGTTAATGTATA+TGG | + | chr8.4:43870230-43870249 | MS.gene36841:intron | 20.0% |
| !!! | ATGTAAGTGGTTTTAAATTT+TGG | - | chr8.4:43870257-43870276 | None:intergenic | 20.0% |
| !!! | TGTTTGTCAATTTTTTTCTT+AGG | + | chr8.4:43871673-43871692 | MS.gene36841:intron | 20.0% |
| ! | CCTAATGTTTATAAAATCTG+AGG | + | chr8.4:43870555-43870574 | MS.gene36841:CDS | 25.0% |
| ! | CTTAAAAGATATGATCTCAA+TGG | + | chr8.4:43870006-43870025 | MS.gene36841:CDS | 25.0% |
| ! | TTCTAATATCATTGCAAAGA+AGG | - | chr8.4:43870837-43870856 | None:intergenic | 25.0% |
| ! | TTCTATATATTAGACAAGGT+TGG | + | chr8.4:43870207-43870226 | MS.gene36841:intron | 25.0% |
| ! | TTGCTATAATGATCCAAAAT+AGG | - | chr8.4:43871057-43871076 | None:intergenic | 25.0% |
| ! | TTGTAATAGCTAGTTAAAAC+TGG | - | chr8.4:43870610-43870629 | None:intergenic | 25.0% |
| ! | TTTATATATGTTACTCTCCT+TGG | - | chr8.4:43870317-43870336 | None:intergenic | 25.0% |
| !! | AATTTTTACTACACTCAGTT+TGG | - | chr8.4:43870951-43870970 | None:intergenic | 25.0% |
| !! | ATTTTGGATCATTATAGCAA+TGG | + | chr8.4:43871057-43871076 | MS.gene36841:CDS | 25.0% |
| !! | CCTCAGATTTTATAAACATT+AGG | - | chr8.4:43870558-43870577 | None:intergenic | 25.0% |
| !! | TTTTCTTATATAAAGGACCA+AGG | + | chr8.4:43870297-43870316 | MS.gene36841:intron | 25.0% |
| !!! | AAATTGATTTTTTGCAGTTC+TGG | + | chr8.4:43870400-43870419 | MS.gene36841:intron | 25.0% |
| !!! | AATTGATTTTTTGCAGTTCT+GGG | + | chr8.4:43870401-43870420 | MS.gene36841:intron | 25.0% |
| !!! | ATAAGGTCTATCTCTAAAAT+AGG | - | chr8.4:43870638-43870657 | None:intergenic | 25.0% |
| !!! | TCAAAACAAAGAGGTTTTAA+GGG | + | chr8.4:43870750-43870769 | MS.gene36841:CDS | 25.0% |
| !!! | TTTTTTTGTTCTGTTCAACA+AGG | - | chr8.4:43869891-43869910 | None:intergenic | 25.0% |
| ACTGTTGAGTCAGTAATTAA+AGG | - | chr8.4:43870874-43870893 | None:intergenic | 30.0% | |
| CAAAAATTCAAAGTAGCACA+TGG | - | chr8.4:43871187-43871206 | None:intergenic | 30.0% | |
| CTGAGTGTAGTAAAAATTCT+TGG | + | chr8.4:43870953-43870972 | MS.gene36841:CDS | 30.0% | |
| CTGTTGAGTCAGTAATTAAA+GGG | - | chr8.4:43870873-43870892 | None:intergenic | 30.0% | |
| CTTTGCAATGATATTAGAAC+TGG | + | chr8.4:43870838-43870857 | MS.gene36841:CDS | 30.0% | |
| TAATATATAGAACCAGAGGA+AGG | - | chr8.4:43870199-43870218 | None:intergenic | 30.0% | |
| TCAACAAATGTTGATGTAAG+TGG | - | chr8.4:43870270-43870289 | None:intergenic | 30.0% | |
| TCTTTCTCATTAAGAGATCT+AGG | - | chr8.4:43871252-43871271 | None:intergenic | 30.0% | |
| TGAACAGAACAAAAAAATCC+TGG | + | chr8.4:43869894-43869913 | MS.gene36841:CDS | 30.0% | |
| TGGATAAAATCAGCAAGTTT+AGG | - | chr8.4:43870931-43870950 | None:intergenic | 30.0% | |
| TGTAGTAAAAATTCTTGGCA+GGG | + | chr8.4:43870958-43870977 | MS.gene36841:CDS | 30.0% | |
| TGTCTAATATATAGAACCAG+AGG | - | chr8.4:43870203-43870222 | None:intergenic | 30.0% | |
| TGTGTAACTGTAAACAGATT+TGG | + | chr8.4:43871609-43871628 | MS.gene36841:intron | 30.0% | |
| TTGTTCCTGGTTTAGAAAAA+GGG | + | chr8.4:43870521-43870540 | MS.gene36841:CDS | 30.0% | |
| TTTGTTCCTGGTTTAGAAAA+AGG | + | chr8.4:43870520-43870539 | MS.gene36841:CDS | 30.0% | |
| ! | AATTGAAGCACCTAAACTAA+TGG | - | chr8.4:43872124-43872143 | None:intergenic | 30.0% |
| ! | ATGGATTATGCCATTAGTTT+AGG | + | chr8.4:43872111-43872130 | MS.gene36841:CDS | 30.0% |
| ! | GTCAAAACAAAGAGGTTTTA+AGG | + | chr8.4:43870749-43870768 | MS.gene36841:CDS | 30.0% |
| ! | GTCACAGTATATTCCTATTT+TGG | + | chr8.4:43871041-43871060 | MS.gene36841:CDS | 30.0% |
| !! | ATGAAGAATCTTAGTCTTAC+CGG | - | chr8.4:43871346-43871365 | None:intergenic | 30.0% |
| !! | CTGGTTCTATATATTAGACA+AGG | + | chr8.4:43870203-43870222 | MS.gene36841:intron | 30.0% |
| !!! | AGAGTTTTTTGAAAGTGTCA+CGG | - | chr8.4:43870041-43870060 | None:intergenic | 30.0% |
| !!! | ATTTGCCTCTGGTTTTATAA+GGG | + | chr8.4:43870783-43870802 | MS.gene36841:CDS | 30.0% |
| !!! | TATTTGCCTCTGGTTTTATA+AGG | + | chr8.4:43870782-43870801 | MS.gene36841:CDS | 30.0% |
| !!! | TGCTCAATACCACATTTTTT+CGG | - | chr8.4:43871777-43871796 | None:intergenic | 30.0% |
| AAAAATCCTGGACTTCATTG+AGG | + | chr8.4:43869906-43869925 | MS.gene36841:CDS | 35.0% | |
| AATAGCCCTTATAAAACCAG+AGG | - | chr8.4:43870791-43870810 | None:intergenic | 35.0% | |
| AATTCAAAGTAGCACATGGT+AGG | - | chr8.4:43871183-43871202 | None:intergenic | 35.0% | |
| ACACCATTACTTCTATTCAC+AGG | - | chr8.4:43871210-43871229 | None:intergenic | 35.0% | |
| ACATCCACATACTTGGTATT+AGG | - | chr8.4:43871003-43871022 | None:intergenic | 35.0% | |
| AGTTGAGCTTCAAAATGCAA+TGG | + | chr8.4:43871819-43871838 | MS.gene36841:CDS | 35.0% | |
| ATGTATTCTCAACTGCTTTG+TGG | + | chr8.4:43870721-43870740 | MS.gene36841:CDS | 35.0% | |
| CAACAATTGAAGACGAGTTA+GGG | + | chr8.4:43870452-43870471 | MS.gene36841:CDS | 35.0% | |
| CAATCTTCAAAAACACAAGG+TGG | - | chr8.4:43871976-43871995 | None:intergenic | 35.0% | |
| CACAATAACATCCACATACT+TGG | - | chr8.4:43871010-43871029 | None:intergenic | 35.0% | |
| CAGCAATCTTCAAAAACACA+AGG | - | chr8.4:43871979-43871998 | None:intergenic | 35.0% | |
| CATACAAATAATCCTTCCTC+TGG | + | chr8.4:43870184-43870203 | MS.gene36841:intron | 35.0% | |
| GACACAGTACAGTTTCATTT+GGG | - | chr8.4:43870684-43870703 | None:intergenic | 35.0% | |
| GAGATCAAGATTGTTGAACA+GGG | + | chr8.4:43872072-43872091 | MS.gene36841:CDS | 35.0% | |
| GTAGTAAAAATTCTTGGCAG+GGG | + | chr8.4:43870959-43870978 | MS.gene36841:CDS | 35.0% | |
| GTGTAGTAAAAATTCTTGGC+AGG | + | chr8.4:43870957-43870976 | MS.gene36841:CDS | 35.0% | |
| TACATGCTTTGGTATGAATC+AGG | - | chr8.4:43870706-43870725 | None:intergenic | 35.0% | |
| TATGTGGATGTTATTGTGAC+TGG | + | chr8.4:43871012-43871031 | MS.gene36841:CDS | 35.0% | |
| TCAACAATCTTGATCTCAAG+CGG | - | chr8.4:43872069-43872088 | None:intergenic | 35.0% | |
| TGAGATCAAGATTGTTGAAC+AGG | + | chr8.4:43872071-43872090 | MS.gene36841:CDS | 35.0% | |
| TGGTCTTTGTCAAAACAAAG+AGG | + | chr8.4:43870741-43870760 | MS.gene36841:CDS | 35.0% | |
| TGTTGAACTCTTGAACTCAA+GGG | + | chr8.4:43872185-43872204 | MS.gene36841:CDS | 35.0% | |
| TTAATCAGTACAAGACACCA+AGG | + | chr8.4:43872142-43872161 | MS.gene36841:CDS | 35.0% | |
| TTAGGTTCCTTGAGAAACAT+TGG | + | chr8.4:43870809-43870828 | MS.gene36841:CDS | 35.0% | |
| TTGCCTGTGAATAGAAGTAA+TGG | + | chr8.4:43871204-43871223 | MS.gene36841:CDS | 35.0% | |
| TTGTTGAACTCTTGAACTCA+AGG | + | chr8.4:43872184-43872203 | MS.gene36841:CDS | 35.0% | |
| TTTCTAAACCAGGAACAAAC+TGG | - | chr8.4:43870519-43870538 | None:intergenic | 35.0% | |
| ! | AAATCAGCAAGTTTAGGATC+AGG | - | chr8.4:43870925-43870944 | None:intergenic | 35.0% |
| ! | AGAGAACCTTTTGTTGAACT+TGG | - | chr8.4:43869951-43869970 | None:intergenic | 35.0% |
| ! | CAAGTTTAGGATCAGGTTTA+AGG | - | chr8.4:43870918-43870937 | None:intergenic | 35.0% |
| ! | GCTTCTAGTGAATGTTACTT+TGG | + | chr8.4:43871105-43871124 | MS.gene36841:CDS | 35.0% |
| ! | TAGTTTGTGTAAGGGTCATA+AGG | - | chr8.4:43870655-43870674 | None:intergenic | 35.0% |
| !! | GAACTTGTTGATGTCAAACT+TGG | + | chr8.4:43871288-43871307 | MS.gene36841:CDS | 35.0% |
| !!! | AACAAAGAGGTTTTAAGGGT+TGG | + | chr8.4:43870754-43870773 | MS.gene36841:CDS | 35.0% |
| !!! | CTGGTTTTATAAGGGCTATT+AGG | + | chr8.4:43870791-43870810 | MS.gene36841:CDS | 35.0% |
| AGAGTGTAAGACACTTCACT+AGG | - | chr8.4:43871156-43871175 | None:intergenic | 40.0% | |
| AGGGGATAATTACTAGGCTT+TGG | + | chr8.4:43870977-43870996 | MS.gene36841:CDS | 40.0% | |
| ATAGCTAGTGTATTCGGACA+CGG | - | chr8.4:43871881-43871900 | None:intergenic | 40.0% | |
| CAGTGAGATAGACAGAATCA+CGG | - | chr8.4:43871570-43871589 | None:intergenic | 40.0% | |
| CCAACAATTGAAGACGAGTT+AGG | + | chr8.4:43870451-43870470 | MS.gene36841:CDS | 40.0% | |
| CCTAACTCGTCTTCAATTGT+TGG | - | chr8.4:43870454-43870473 | None:intergenic | 40.0% | |
| CCTGGTTTAGAAAAAGGGAA+AGG | + | chr8.4:43870526-43870545 | MS.gene36841:CDS | 40.0% | |
| CTAGTGAGAAACTCGGAAAT+GGG | - | chr8.4:43870147-43870166 | None:intergenic | 40.0% | |
| GAAGGTTCCAATGTTTCTCA+AGG | - | chr8.4:43870819-43870838 | None:intergenic | 40.0% | |
| GAGTTCAAGAGTTCAACAAC+AGG | - | chr8.4:43872183-43872202 | None:intergenic | 40.0% | |
| GATATTGACCGTATCTCCAA+TGG | + | chr8.4:43870093-43870112 | MS.gene36841:CDS | 40.0% | |
| GCAGTTGAGAATACATGCTT+TGG | - | chr8.4:43870717-43870736 | None:intergenic | 40.0% | |
| GCATACATAGTGCAAACAAG+TGG | - | chr8.4:43871087-43871106 | None:intergenic | 40.0% | |
| GGACACAGTACAGTTTCATT+TGG | - | chr8.4:43870685-43870704 | None:intergenic | 40.0% | |
| GTCTGCATAGCTAGTGTATT+CGG | - | chr8.4:43871887-43871906 | None:intergenic | 40.0% | |
| TAACATCCTCAATGAAGTCC+AGG | - | chr8.4:43869915-43869934 | None:intergenic | 40.0% | |
| TAGCCCTAAATGTCCAAAGT+GGG | + | chr8.4:43872224-43872243 | MS.gene36841:CDS | 40.0% | |
| TGAGAAAGAGCAGAAAGAGT+TGG | + | chr8.4:43871263-43871282 | MS.gene36841:CDS | 40.0% | |
| TTAGCCCTAAATGTCCAAAG+TGG | + | chr8.4:43872223-43872242 | MS.gene36841:CDS | 40.0% | |
| TTGATCCATTGCTTATGACC+AGG | - | chr8.4:43872252-43872271 | None:intergenic | 40.0% | |
| TTGGAGATACGGTCAATATC+AGG | - | chr8.4:43870093-43870112 | None:intergenic | 40.0% | |
| TTGGCCTAATACCAAGTATG+TGG | + | chr8.4:43870996-43871015 | MS.gene36841:CDS | 40.0% | |
| ! | AAATCTGAGGCTAAAACACC+TGG | + | chr8.4:43870568-43870587 | MS.gene36841:CDS | 40.0% |
| ! | ACTTCACTAGGTTGACAAAG+AGG | - | chr8.4:43871144-43871163 | None:intergenic | 40.0% |
| ! | CCTTTCCCTTTTTCTAAACC+AGG | - | chr8.4:43870529-43870548 | None:intergenic | 40.0% |
| ! | CTTCACTAGGTTGACAAAGA+GGG | - | chr8.4:43871143-43871162 | None:intergenic | 40.0% |
| ! | CTTGTTGTCACTACTTATGC+CGG | + | chr8.4:43871324-43871343 | MS.gene36841:CDS | 40.0% |
| ! | GGCTTGTGTAGTTTGTGTAA+GGG | - | chr8.4:43870663-43870682 | None:intergenic | 40.0% |
| ! | GGGCACTTTTGATAAGCTAA+TGG | + | chr8.4:43872092-43872111 | MS.gene36841:CDS | 40.0% |
| ACACATCACCAACTCGGTAA+CGG | - | chr8.4:43871705-43871724 | None:intergenic | 45.0% | |
| AGGTCACTATGTCCTCTACT+GGG | + | chr8.4:43871921-43871940 | MS.gene36841:CDS | 45.0% | |
| CAATTGAAGACGAGTTAGGG+AGG | + | chr8.4:43870455-43870474 | MS.gene36841:CDS | 45.0% | |
| CCACGTGATTGTAGCAATTG+AGG | - | chr8.4:43871464-43871483 | None:intergenic | 45.0% | |
| CCATTTCCGAGTTTCTCACT+AGG | + | chr8.4:43870145-43870164 | MS.gene36841:CDS | 45.0% | |
| CCTAGTGAGAAACTCGGAAA+TGG | - | chr8.4:43870148-43870167 | None:intergenic | 45.0% | |
| CCTCAATTGCTACAATCACG+TGG | + | chr8.4:43871461-43871480 | MS.gene36841:intron | 45.0% | |
| CCTTCAACACATCACCAACT+CGG | - | chr8.4:43871711-43871730 | None:intergenic | 45.0% | |
| CGCTGACCAAGTTCAACAAA+AGG | + | chr8.4:43869942-43869961 | MS.gene36841:CDS | 45.0% | |
| CTTCGTGTGCCGAAAAAATG+TGG | + | chr8.4:43871765-43871784 | MS.gene36841:CDS | 45.0% | |
| CTTGGCAGGGGATAATTACT+AGG | + | chr8.4:43870971-43870990 | MS.gene36841:CDS | 45.0% | |
| GACGAACCTAGTGAGAAACT+CGG | - | chr8.4:43870154-43870173 | None:intergenic | 45.0% | |
| GAGCCCACTTTGGACATTTA+GGG | - | chr8.4:43872230-43872249 | None:intergenic | 45.0% | |
| GCAGACACAACAACAATTCC+AGG | + | chr8.4:43871901-43871920 | MS.gene36841:CDS | 45.0% | |
| TCAACAAGGTTGTAGCCTCT+AGG | - | chr8.4:43869877-43869896 | None:intergenic | 45.0% | |
| TTGAACTTGGTCAGCGTTTG+AGG | - | chr8.4:43869938-43869957 | None:intergenic | 45.0% | |
| ! | AGGTGTCACCATTGGAGATA+CGG | - | chr8.4:43870104-43870123 | None:intergenic | 45.0% |
| ! | ATGGGTTTGGAGCAAAGGAT+AGG | - | chr8.4:43870129-43870148 | None:intergenic | 45.0% |
| ! | GAGAAACTCGGAAATGGGTT+TGG | - | chr8.4:43870142-43870161 | None:intergenic | 45.0% |
| ! | GGGCTTGTGTAGTTTGTGTA+AGG | - | chr8.4:43870664-43870683 | None:intergenic | 45.0% |
| ! | TTTGGAGCAAAGGATAGGAG+AGG | - | chr8.4:43870124-43870143 | None:intergenic | 45.0% |
| !!! | TTTTGCAGTTCTGGGACATC+TGG | + | chr8.4:43870409-43870428 | MS.gene36841:intron | 45.0% |
| CACCTGGTGGAATTGTAGCT+AGG | + | chr8.4:43870584-43870603 | MS.gene36841:CDS | 50.0% | |
| CAGGTCACTATGTCCTCTAC+TGG | + | chr8.4:43871920-43871939 | MS.gene36841:CDS | 50.0% | |
| CAGTAGAGGACATAGTGACC+TGG | - | chr8.4:43871922-43871941 | None:intergenic | 50.0% | |
| CGATAGATTTGTCCGAGACG+CGG | - | chr8.4:43872044-43872063 | None:intergenic | 50.0% | |
| CGCGTCTCGGACAAATCTAT+CGG | + | chr8.4:43872042-43872061 | MS.gene36841:CDS | 50.0% | |
| CGGCACACGAAGTTGAATTG+CGG | - | chr8.4:43871757-43871776 | None:intergenic | 50.0% | |
| GGACTATACCGTTACCGAGT+TGG | + | chr8.4:43871694-43871713 | MS.gene36841:intron | 50.0% | |
| GGAGCCCACTTTGGACATTT+AGG | - | chr8.4:43872231-43872250 | None:intergenic | 50.0% | |
| GGTGATGTGTTGAAGGTAGC+TGG | + | chr8.4:43871715-43871734 | MS.gene36841:CDS | 50.0% | |
| GGTGCAAACTTCACACACCT+TGG | - | chr8.4:43872162-43872181 | None:intergenic | 50.0% | |
| TCAGAGTGAGTTCCCAGTAG+AGG | - | chr8.4:43871936-43871955 | None:intergenic | 50.0% | |
| TTATGACCAGGAGCCCACTT+TGG | - | chr8.4:43872240-43872259 | None:intergenic | 50.0% | |
| ! | AAATGTCCAAAGTGGGCTCC+TGG | + | chr8.4:43872231-43872250 | MS.gene36841:CDS | 50.0% |
| ! | ACTCAACAGCGTGTATCGAC+AGG | + | chr8.4:43872017-43872036 | MS.gene36841:CDS | 50.0% |
| ! | CGGAAATGGGTTTGGAGCAA+AGG | - | chr8.4:43870134-43870153 | None:intergenic | 50.0% |
| ! | CTCAACAGCGTGTATCGACA+GGG | + | chr8.4:43872018-43872037 | MS.gene36841:CDS | 50.0% |
| ! | GGAACAAACTGGCTCATCAC+TGG | - | chr8.4:43870508-43870527 | None:intergenic | 50.0% |
| ! | GTGATGAGCCAGTTTGTTCC+TGG | + | chr8.4:43870508-43870527 | MS.gene36841:CDS | 50.0% |
| ! | TCTGAGGCTAAAACACCTGG+TGG | + | chr8.4:43870571-43870590 | MS.gene36841:CDS | 50.0% |
| !! | CCGAGTTGGTGATGTGTTGA+AGG | + | chr8.4:43871708-43871727 | MS.gene36841:CDS | 50.0% |
| !! | GATAGGAGAGGTGTCACCAT+TGG | - | chr8.4:43870112-43870131 | None:intergenic | 50.0% |
| !! | GTTGGTGCTGTATTTGCCTC+TGG | + | chr8.4:43870772-43870791 | MS.gene36841:CDS | 50.0% |
| GGCCTAGCTACAATTCCACC+AGG | - | chr8.4:43870589-43870608 | None:intergenic | 55.0% | |
| GGGCTCCTGGTCATAAGCAA+TGG | + | chr8.4:43872244-43872263 | MS.gene36841:CDS | 55.0% | |
| TCGGACACGGTTGCATCGAA+TGG | - | chr8.4:43871868-43871887 | None:intergenic | 55.0% | |
| TTGTAGCCTCTAGGTGCCTC+AGG | - | chr8.4:43869868-43869887 | None:intergenic | 55.0% | |
| !! | TGCAGTTCTGGGACATCTGG+AGG | + | chr8.4:43870412-43870431 | MS.gene36841:intron | 55.0% |
| ! | GTATCGACAGGGCCGCGTCT+CGG | + | chr8.4:43872029-43872048 | MS.gene36841:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 43869862 | 43872281 | 43869862 | ID=MS.gene36841 |
| chr8.4 | mRNA | 43869862 | 43872281 | 43869862 | ID=MS.gene36841.t1;Parent=MS.gene36841 |
| chr8.4 | exon | 43869862 | 43870166 | 43869862 | ID=MS.gene36841.t1.exon1;Parent=MS.gene36841.t1 |
| chr8.4 | CDS | 43869862 | 43870166 | 43869862 | ID=cds.MS.gene36841.t1;Parent=MS.gene36841.t1 |
| chr8.4 | exon | 43870417 | 43871345 | 43870417 | ID=MS.gene36841.t1.exon2;Parent=MS.gene36841.t1 |
| chr8.4 | CDS | 43870417 | 43871345 | 43870417 | ID=cds.MS.gene36841.t1;Parent=MS.gene36841.t1 |
| chr8.4 | exon | 43871695 | 43872281 | 43871695 | ID=MS.gene36841.t1.exon3;Parent=MS.gene36841.t1 |
| chr8.4 | CDS | 43871695 | 43872281 | 43871695 | ID=cds.MS.gene36841.t1;Parent=MS.gene36841.t1 |
| Gene Sequence |
| Protein sequence |
