Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046033.t1 | XP_013442717.1 | 97.5 | 600 | 12 | 2 | 1 | 598 | 1 | 599 | 0.00E+00 | 1200.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046033.t1 | Q9ZNS2 | 67.5 | 585 | 181 | 5 | 18 | 595 | 8 | 590 | 5.3e-235 | 815.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046033.t1 | A0A072TH59 | 97.5 | 600 | 12 | 2 | 1 | 598 | 1 | 599 | 0.0e+00 | 1200.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59583 | MS.gene046033 | PPI |
| MS.gene046366 | MS.gene046033 | PPI |
| MS.gene046033 | MS.gene95299 | PPI |
| MS.gene046033 | MS.gene86023 | PPI |
| MS.gene79749 | MS.gene046033 | PPI |
| MS.gene024458 | MS.gene046033 | PPI |
| MS.gene95295 | MS.gene046033 | PPI |
| MS.gene050633 | MS.gene046033 | PPI |
| MS.gene000373 | MS.gene046033 | PPI |
| MS.gene22809 | MS.gene046033 | PPI |
| MS.gene025922 | MS.gene046033 | PPI |
| MS.gene41352 | MS.gene046033 | PPI |
| MS.gene43375 | MS.gene046033 | PPI |
| MS.gene59582 | MS.gene046033 | PPI |
| MS.gene79751 | MS.gene046033 | PPI |
| MS.gene95297 | MS.gene046033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046033.t1 | MTR_0102s0060 | 97.500 | 600 | 12 | 2 | 1 | 598 | 1 | 599 | 0.0 | 1213 |
| MS.gene046033.t1 | MTR_7g117110 | 48.454 | 582 | 287 | 6 | 17 | 596 | 9 | 579 | 0.0 | 582 |
| MS.gene046033.t1 | MTR_8g027920 | 46.048 | 582 | 297 | 8 | 17 | 596 | 9 | 575 | 0.0 | 539 |
| MS.gene046033.t1 | MTR_8g027965 | 46.220 | 582 | 296 | 8 | 17 | 596 | 9 | 575 | 0.0 | 537 |
| MS.gene046033.t1 | MTR_8g027955 | 46.392 | 582 | 295 | 8 | 17 | 596 | 16 | 582 | 0.0 | 536 |
| MS.gene046033.t1 | MTR_8g027970 | 43.299 | 582 | 313 | 8 | 17 | 596 | 9 | 575 | 2.64e-180 | 522 |
| MS.gene046033.t1 | MTR_7g117110 | 46.420 | 405 | 206 | 5 | 17 | 421 | 9 | 402 | 3.77e-127 | 380 |
| MS.gene046033.t1 | MTR_4g045903 | 34.880 | 582 | 352 | 9 | 22 | 593 | 33 | 597 | 3.37e-125 | 382 |
| MS.gene046033.t1 | MTR_8g467000 | 34.753 | 587 | 358 | 7 | 19 | 592 | 15 | 589 | 1.89e-124 | 380 |
| MS.gene046033.t1 | MTR_0035s0150 | 34.271 | 569 | 351 | 6 | 22 | 587 | 23 | 571 | 3.59e-121 | 371 |
| MS.gene046033.t1 | MTR_1g088765 | 35.428 | 573 | 336 | 9 | 19 | 572 | 11 | 568 | 6.29e-119 | 365 |
| MS.gene046033.t1 | MTR_2g081860 | 34.242 | 587 | 358 | 10 | 22 | 592 | 17 | 591 | 7.78e-119 | 365 |
| MS.gene046033.t1 | MTR_5g016320 | 32.753 | 574 | 364 | 6 | 22 | 587 | 24 | 583 | 6.97e-114 | 352 |
| MS.gene046033.t1 | MTR_1g088765 | 38.369 | 417 | 240 | 7 | 169 | 572 | 12 | 424 | 1.27e-97 | 305 |
| MS.gene046033.t1 | MTR_7g094190 | 31.175 | 587 | 366 | 16 | 19 | 586 | 5 | 572 | 1.28e-89 | 288 |
| MS.gene046033.t1 | MTR_8g037720 | 43.887 | 319 | 153 | 3 | 280 | 596 | 141 | 435 | 1.46e-89 | 284 |
| MS.gene046033.t1 | MTR_8g037720 | 37.037 | 135 | 78 | 2 | 19 | 153 | 2 | 129 | 1.29e-17 | 85.9 |
| MS.gene046033.t1 | MTR_1g047730 | 48.462 | 260 | 121 | 2 | 339 | 596 | 114 | 362 | 1.39e-81 | 261 |
| MS.gene046033.t1 | MTR_7g094190 | 32.244 | 459 | 283 | 11 | 143 | 586 | 27 | 472 | 7.28e-76 | 249 |
| MS.gene046033.t1 | MTR_7g094330 | 29.965 | 287 | 162 | 8 | 143 | 427 | 27 | 276 | 1.09e-38 | 144 |
| MS.gene046033.t1 | MTR_3g023280 | 40.860 | 93 | 46 | 5 | 488 | 572 | 8 | 99 | 4.07e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046033.t1 | AT4G03400 | 67.177 | 588 | 184 | 5 | 15 | 595 | 5 | 590 | 0.0 | 827 |
| MS.gene046033.t1 | AT4G03400 | 67.177 | 588 | 184 | 5 | 15 | 595 | 5 | 590 | 0.0 | 827 |
| MS.gene046033.t1 | AT2G46370 | 46.299 | 581 | 296 | 5 | 17 | 595 | 20 | 586 | 0.0 | 565 |
| MS.gene046033.t1 | AT2G46370 | 46.299 | 581 | 296 | 5 | 17 | 595 | 9 | 575 | 0.0 | 565 |
| MS.gene046033.t1 | AT2G46370 | 46.299 | 581 | 296 | 5 | 17 | 595 | 9 | 575 | 0.0 | 565 |
| MS.gene046033.t1 | AT2G46370 | 48.708 | 503 | 247 | 4 | 95 | 595 | 3 | 496 | 0.0 | 526 |
| MS.gene046033.t1 | AT4G37390 | 34.843 | 574 | 355 | 6 | 22 | 587 | 24 | 586 | 8.78e-131 | 396 |
| MS.gene046033.t1 | AT1G28130 | 34.868 | 608 | 359 | 8 | 7 | 592 | 4 | 596 | 1.29e-128 | 390 |
| MS.gene046033.t1 | AT1G59500 | 35.777 | 573 | 345 | 7 | 22 | 587 | 24 | 580 | 1.16e-125 | 383 |
| MS.gene046033.t1 | AT2G23170 | 34.091 | 572 | 355 | 8 | 22 | 587 | 23 | 578 | 2.51e-122 | 374 |
| MS.gene046033.t1 | AT4G27260 | 34.247 | 584 | 359 | 7 | 22 | 592 | 25 | 596 | 2.07e-120 | 370 |
| MS.gene046033.t1 | AT5G54510 | 33.901 | 587 | 363 | 7 | 19 | 592 | 22 | 596 | 4.19e-120 | 369 |
| MS.gene046033.t1 | AT2G14960 | 32.810 | 573 | 355 | 8 | 22 | 587 | 23 | 572 | 2.17e-114 | 353 |
| MS.gene046033.t1 | AT5G13320 | 33.793 | 580 | 352 | 8 | 25 | 592 | 15 | 574 | 1.01e-113 | 351 |
| MS.gene046033.t1 | AT5G13320 | 33.793 | 580 | 352 | 8 | 25 | 592 | 15 | 574 | 1.01e-113 | 351 |
| MS.gene046033.t1 | AT1G23160 | 34.134 | 583 | 348 | 9 | 25 | 593 | 18 | 578 | 1.30e-113 | 351 |
| MS.gene046033.t1 | AT5G13320 | 33.793 | 580 | 352 | 8 | 25 | 592 | 30 | 589 | 1.64e-113 | 351 |
| MS.gene046033.t1 | AT5G13350 | 33.051 | 590 | 365 | 10 | 16 | 592 | 8 | 580 | 2.57e-113 | 350 |
| MS.gene046033.t1 | AT5G13350 | 33.051 | 590 | 365 | 10 | 16 | 592 | 8 | 580 | 2.57e-113 | 350 |
| MS.gene046033.t1 | AT1G48660 | 32.062 | 577 | 365 | 6 | 25 | 592 | 10 | 568 | 1.04e-112 | 348 |
| MS.gene046033.t1 | AT5G13360 | 33.559 | 590 | 361 | 9 | 16 | 592 | 8 | 579 | 3.80e-112 | 348 |
| MS.gene046033.t1 | AT5G13360 | 33.559 | 590 | 361 | 9 | 16 | 592 | 8 | 579 | 3.80e-112 | 348 |
| MS.gene046033.t1 | AT1G48660 | 32.174 | 575 | 364 | 6 | 25 | 592 | 10 | 565 | 5.91e-112 | 347 |
| MS.gene046033.t1 | AT2G47750 | 32.765 | 586 | 369 | 10 | 17 | 592 | 7 | 577 | 9.77e-112 | 346 |
| MS.gene046033.t1 | AT5G13360 | 33.559 | 590 | 361 | 9 | 16 | 592 | 86 | 657 | 2.77e-111 | 348 |
| MS.gene046033.t1 | AT5G13370 | 33.673 | 588 | 352 | 12 | 22 | 592 | 14 | 580 | 1.26e-109 | 341 |
| MS.gene046033.t1 | AT5G13380 | 32.483 | 588 | 358 | 10 | 22 | 592 | 44 | 609 | 1.41e-104 | 329 |
| MS.gene046033.t1 | AT5G51470 | 32.686 | 566 | 355 | 4 | 25 | 583 | 16 | 562 | 7.94e-104 | 326 |
| MS.gene046033.t1 | AT1G28130 | 37.136 | 447 | 255 | 6 | 168 | 592 | 11 | 453 | 5.02e-102 | 317 |
| MS.gene046033.t1 | AT1G48670 | 36.211 | 417 | 245 | 6 | 185 | 592 | 2 | 406 | 2.94e-93 | 293 |
| MS.gene046033.t1 | AT1G48670 | 30.277 | 578 | 322 | 12 | 25 | 592 | 11 | 517 | 4.28e-92 | 293 |
| MS.gene046033.t1 | AT5G51470 | 33.473 | 478 | 300 | 3 | 113 | 583 | 6 | 472 | 3.40e-87 | 280 |
| MS.gene046033.t1 | AT1G48690 | 29.167 | 192 | 125 | 2 | 25 | 216 | 10 | 190 | 1.23e-17 | 81.6 |
Find 119 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTCCTCCTTCCCTTAT+TGG | 0.088269 | 4.4:-57750111 | None:intergenic |
| CTGCATATGAAGTTCAATTT+TGG | 0.089319 | 4.4:-57754004 | None:intergenic |
| AAAATTGAGAGAGGCTATTT+TGG | 0.167851 | 4.4:+57750473 | MS.gene046033:CDS |
| AAAATAGCCTCTCTCAATTT+TGG | 0.172918 | 4.4:-57750471 | None:intergenic |
| AGGGACTTTCAAGAAGATTT+TGG | 0.198041 | 4.4:+57754330 | MS.gene046033:CDS |
| GCCACTTGAACTTTGCATTT+TGG | 0.203128 | 4.4:+57754303 | MS.gene046033:CDS |
| TTTGCAGAGTTTATCCAATA+AGG | 0.214961 | 4.4:+57750097 | MS.gene046033:intron |
| GTTATTTACTGGGAGATTAA+AGG | 0.230982 | 4.4:+57754181 | MS.gene046033:CDS |
| GACAATATGTGGATTGTTTA+TGG | 0.232670 | 4.4:-57750293 | None:intergenic |
| TTGACACTTATACCATAAAA+AGG | 0.248016 | 4.4:+57754434 | MS.gene046033:CDS |
| AATAAGTCCAGACACAAATT+TGG | 0.254129 | 4.4:+57750503 | MS.gene046033:CDS |
| GGAATCCCTTTACACTTCTT+TGG | 0.256794 | 4.4:+57747456 | MS.gene046033:CDS |
| ACATATTGTCACCTCCTTCT+TGG | 0.270579 | 4.4:+57750306 | MS.gene046033:CDS |
| TGCACCTAGGAGTCTTAAAT+TGG | 0.272433 | 4.4:-57754384 | None:intergenic |
| CTGGTCACTACGTTATTTAC+TGG | 0.272776 | 4.4:+57754170 | MS.gene046033:CDS |
| GCTAGTAAAATCAACAATTT+CGG | 0.308582 | 4.4:-57754125 | None:intergenic |
| CCTTTGATTAGTGCTGATTA+TGG | 0.311269 | 4.4:+57750681 | MS.gene046033:CDS |
| ACAGCAAATGTAACTTCTTC+TGG | 0.332953 | 4.4:-57750750 | None:intergenic |
| TTGGATAATTTCATAGCAAA+TGG | 0.352160 | 4.4:+57754349 | MS.gene046033:CDS |
| ATAATCTTGGACAATGGAAT+TGG | 0.356851 | 4.4:-57750855 | None:intergenic |
| CTTAAGGAAAGAGTGGTTAT+AGG | 0.357105 | 4.4:-57747562 | None:intergenic |
| GGATTACAATATATTCGATA+TGG | 0.361372 | 4.4:+57747420 | MS.gene046033:CDS |
| GCATACAAGTACTTAACATT+TGG | 0.367549 | 4.4:-57750597 | None:intergenic |
| GAATATCTCAAGAAATGGTT+AGG | 0.367643 | 4.4:+57747397 | MS.gene046033:CDS |
| AAACTTAGACATTATGCAAA+TGG | 0.367702 | 4.4:+57750654 | MS.gene046033:CDS |
| CTATAACCACTCTTTCCTTA+AGG | 0.386150 | 4.4:+57747563 | MS.gene046033:CDS |
| TTGCAGAGTTTATCCAATAA+GGG | 0.407774 | 4.4:+57750098 | MS.gene046033:intron |
| TTAAACTTACAGGGTTATAC+AGG | 0.407977 | 4.4:+57753933 | MS.gene046033:intron |
| TTTGAAGCCAAATTTGTGTC+TGG | 0.408795 | 4.4:-57750510 | None:intergenic |
| ACTTCTTCTGGTGGCAAACT+AGG | 0.412517 | 4.4:-57750738 | None:intergenic |
| CTGAGAAGTGTTGGTTCCAT+TGG | 0.419789 | 4.4:-57747244 | None:intergenic |
| CCATTGTCCAAGATTATAGT+AGG | 0.419799 | 4.4:+57750861 | MS.gene046033:CDS |
| TGGATAATTTCATAGCAAAT+GGG | 0.420226 | 4.4:+57754350 | MS.gene046033:CDS |
| AAATCAGCATGTGAAGCAAT+AGG | 0.420636 | 4.4:-57747481 | None:intergenic |
| TGATGATTGTTGCAGAGAAA+TGG | 0.425098 | 4.4:+57754225 | MS.gene046033:CDS |
| CTGTTGTCCTACTATAATCT+TGG | 0.439515 | 4.4:-57750868 | None:intergenic |
| ACTATGAAAACATTATTAGT+TGG | 0.441413 | 4.4:+57747296 | MS.gene046033:CDS |
| GTGTGGAATATCTCAAGAAA+TGG | 0.451140 | 4.4:+57747392 | MS.gene046033:CDS |
| AGGAACCAAAGAAGTGTAAA+GGG | 0.454924 | 4.4:-57747461 | None:intergenic |
| AACTTAGACATTATGCAAAT+GGG | 0.457425 | 4.4:+57750655 | MS.gene046033:CDS |
| AGGGTTCTTGAATTCATATA+CGG | 0.463184 | 4.4:+57750129 | MS.gene046033:CDS |
| AGCAACTGTTTCAAAACAAA+AGG | 0.464090 | 4.4:+57750153 | MS.gene046033:CDS |
| TTGAGCACTATGTCGGGTAA+AGG | 0.468379 | 4.4:-57748211 | None:intergenic |
| CTCTCTCTACCACTAGTTGA+AGG | 0.468806 | 4.4:-57754075 | None:intergenic |
| TTCTCTCCAATGTTCTTCAA+AGG | 0.473269 | 4.4:-57750400 | None:intergenic |
| ATAGGTTGTTGAGTGAGTAA+AGG | 0.478480 | 4.4:-57747544 | None:intergenic |
| TACTTGTATGCAATAATGAC+AGG | 0.480569 | 4.4:+57750609 | MS.gene046033:CDS |
| TGAACCAATTTAAGACTCCT+AGG | 0.482138 | 4.4:+57754380 | MS.gene046033:CDS |
| TCGGAAATTCTCTGAATGAA+TGG | 0.484621 | 4.4:-57747508 | None:intergenic |
| CACTGAAAATCACTTCTTGA+GGG | 0.485723 | 4.4:-57750266 | None:intergenic |
| TAGGAACCAAAGAAGTGTAA+AGG | 0.493158 | 4.4:-57747462 | None:intergenic |
| GGAGATGTGGTAGAAGTGTC+AGG | 0.498436 | 4.4:+57753965 | MS.gene046033:CDS |
| AGCTACAACAGCAATGGTTG+TGG | 0.498704 | 4.4:+57747265 | MS.gene046033:CDS |
| CAGAGTAGAAGAGGCCAAGA+AGG | 0.500086 | 4.4:-57750320 | None:intergenic |
| AAGAAGGAGGTGACAATATG+TGG | 0.502219 | 4.4:-57750304 | None:intergenic |
| AATTTGGCTTCAAAATTACA+AGG | 0.505896 | 4.4:+57750519 | MS.gene046033:CDS |
| AATATCTCAAGAAATGGTTA+GGG | 0.508183 | 4.4:+57747398 | MS.gene046033:CDS |
| ATCCAATAAGGGAAGGAGGA+AGG | 0.508750 | 4.4:+57750109 | MS.gene046033:CDS |
| ATTATGGTTCAACTGAGAGC+TGG | 0.510234 | 4.4:+57750697 | MS.gene046033:CDS |
| GAATTCAAAGTAAGAGAATG+TGG | 0.511086 | 4.4:-57750778 | None:intergenic |
| TCCAATAAGGGAAGGAGGAA+GGG | 0.513464 | 4.4:+57750110 | MS.gene046033:CDS |
| AAGTGTCAGGATTTCACAAT+GGG | 0.514165 | 4.4:+57753978 | MS.gene046033:CDS |
| GGGTTATACAGGTGCAGACT+AGG | 0.516374 | 4.4:+57753944 | MS.gene046033:intron |
| GGTTCAACTGAGAGCTGGAT+TGG | 0.516866 | 4.4:+57750702 | MS.gene046033:CDS |
| TGCAGTTCTGGAACCACAGA+GGG | 0.523265 | 4.4:+57748171 | MS.gene046033:intron |
| TGAGCACTATGTCGGGTAAA+GGG | 0.525938 | 4.4:-57748210 | None:intergenic |
| CGATATGGAACCATGTGCAT+TGG | 0.527431 | 4.4:+57747435 | MS.gene046033:CDS |
| CGTGGTTTGAGCACTATGTC+GGG | 0.529475 | 4.4:-57748217 | None:intergenic |
| TCTTGTTTATTTCTATGAAG+AGG | 0.529588 | 4.4:-57750804 | None:intergenic |
| ATCCATGATCAGCAAAAGAT+AGG | 0.531768 | 4.4:-57754249 | None:intergenic |
| TATCAGCAGCATATAGATCA+AGG | 0.536272 | 4.4:+57748256 | MS.gene046033:CDS |
| TCACCACCTTTGAAGAACAT+TGG | 0.538044 | 4.4:+57750394 | MS.gene046033:CDS |
| TCTCCAATGTTCTTCAAAGG+TGG | 0.539352 | 4.4:-57750397 | None:intergenic |
| TCCAAAATGCAAAGTTCAAG+TGG | 0.541118 | 4.4:-57754304 | None:intergenic |
| CTACTTGATCAGAGTAGAAG+AGG | 0.541894 | 4.4:-57750329 | None:intergenic |
| GCGTGGTTTGAGCACTATGT+CGG | 0.549957 | 4.4:-57748218 | None:intergenic |
| GTTGGTTCGAAGATGTGTCT+AGG | 0.559280 | 4.4:+57747314 | MS.gene046033:CDS |
| TGGTCACTACGTTATTTACT+GGG | 0.562828 | 4.4:+57754171 | MS.gene046033:CDS |
| CTGTTGTAGCTGAGAAGTGT+TGG | 0.566243 | 4.4:-57747253 | None:intergenic |
| CCTACTATAATCTTGGACAA+TGG | 0.566836 | 4.4:-57750861 | None:intergenic |
| AACAAAAGGAAATTTAACAG+TGG | 0.573015 | 4.4:+57750167 | MS.gene046033:CDS |
| ACAAAAGGAAATTTAACAGT+GGG | 0.579232 | 4.4:+57750168 | MS.gene046033:CDS |
| CCACTGAAAATCACTTCTTG+AGG | 0.583439 | 4.4:-57750267 | None:intergenic |
| GTTTATCCAATAAGGGAAGG+AGG | 0.586787 | 4.4:+57750105 | MS.gene046033:CDS |
| TTACTGGGAGATTAAAGGAG+AGG | 0.590174 | 4.4:+57754186 | MS.gene046033:CDS |
| CCATAATCAGCACTAATCAA+AGG | 0.602203 | 4.4:-57750681 | None:intergenic |
| CAGTAAATAACGTAGTGACC+AGG | 0.605471 | 4.4:-57754169 | None:intergenic |
| AGGTGACCTTAAGGAAAGAG+TGG | 0.609816 | 4.4:-57747569 | None:intergenic |
| GGATAATTTCATAGCAAATG+GGG | 0.610908 | 4.4:+57754351 | MS.gene046033:CDS |
| AGAGTTTATCCAATAAGGGA+AGG | 0.613843 | 4.4:+57750102 | MS.gene046033:intron |
| TAAAGTGAATATTTGAAGCG+TGG | 0.617745 | 4.4:-57748235 | None:intergenic |
| ATTTGTAATGACATTAGACA+TGG | 0.619879 | 4.4:+57750423 | MS.gene046033:CDS |
| TCTGAAACAAAACCATGGTG+TGG | 0.619947 | 4.4:+57747375 | MS.gene046033:CDS |
| AGTAGAAGAGGCCAAGAAGG+AGG | 0.620885 | 4.4:-57750317 | None:intergenic |
| TTCATTCAGAGAATTTCCGA+TGG | 0.622534 | 4.4:+57747511 | MS.gene046033:CDS |
| CAGGTGCAGACTAGGAGATG+TGG | 0.622806 | 4.4:+57753952 | MS.gene046033:CDS |
| GAATTTCTGCCTCCCCTCTG+TGG | 0.624902 | 4.4:-57748184 | None:intergenic |
| TAAAGGAGCAGTGTCACCAT+CGG | 0.631135 | 4.4:-57747527 | None:intergenic |
| GCAGATGTAACTAATGAACC+TGG | 0.631349 | 4.4:+57754151 | MS.gene046033:CDS |
| AATTCAAAGTAAGAGAATGT+GGG | 0.632105 | 4.4:-57750777 | None:intergenic |
| AAAATTACAAGGCTATTGTG+AGG | 0.634297 | 4.4:+57750530 | MS.gene046033:CDS |
| TCTTGAGATATTCCACACCA+TGG | 0.638732 | 4.4:-57747387 | None:intergenic |
| CTTCTCAGCTACAACAGCAA+TGG | 0.638821 | 4.4:+57747259 | MS.gene046033:CDS |
| TAAGTCACCAAAATTGAGAG+AGG | 0.640371 | 4.4:+57750464 | MS.gene046033:CDS |
| GAAGTGTCAGGATTTCACAA+TGG | 0.640985 | 4.4:+57753977 | MS.gene046033:CDS |
| AGAGAAGGACCTTCAACTAG+TGG | 0.647323 | 4.4:+57754066 | MS.gene046033:CDS |
| GCAAATGTAACTTCTTCTGG+TGG | 0.654228 | 4.4:-57750747 | None:intergenic |
| GTTCTGGAACCACAGAGGGG+AGG | 0.654673 | 4.4:+57748175 | MS.gene046033:intron |
| GAAGATGTGTCTAGGAACAC+AGG | 0.656944 | 4.4:+57747322 | MS.gene046033:CDS |
| CTTCAACTAGTGGTAGAGAG+AGG | 0.670697 | 4.4:+57754076 | MS.gene046033:CDS |
| TAATACCTGTAAAAGTTGTG+AGG | 0.672649 | 4.4:-57750902 | None:intergenic |
| TAAAGGGATTCCAATGCACA+TGG | 0.676339 | 4.4:-57747445 | None:intergenic |
| AATATTCTGAAACAAAACCA+TGG | 0.689332 | 4.4:+57747370 | MS.gene046033:CDS |
| ACATGATTGTTAGTGCACCT+AGG | 0.701373 | 4.4:-57754397 | None:intergenic |
| TTGCAGTTCTGGAACCACAG+AGG | 0.703020 | 4.4:+57748170 | MS.gene046033:intron |
| ACTTGTATGCAATAATGACA+GGG | 0.704012 | 4.4:+57750610 | MS.gene046033:CDS |
| ATATCTCAAGAAATGGTTAG+GGG | 0.711051 | 4.4:+57747399 | MS.gene046033:CDS |
| CATGCTATAGACAAAAGCTG+AGG | 0.714203 | 4.4:-57750361 | None:intergenic |
| GCAGTTCTGGAACCACAGAG+GGG | 0.716358 | 4.4:+57748172 | MS.gene046033:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 57747247 | 57754486 | 57747247 | ID=MS.gene046033 |
| chr4.4 | mRNA | 57747247 | 57754486 | 57747247 | ID=MS.gene046033.t1;Parent=MS.gene046033 |
| chr4.4 | exon | 57747247 | 57747584 | 57747247 | ID=MS.gene046033.t1.exon1;Parent=MS.gene046033.t1 |
| chr4.4 | CDS | 57747247 | 57747584 | 57747247 | ID=cds.MS.gene046033.t1;Parent=MS.gene046033.t1 |
| chr4.4 | exon | 57748176 | 57748277 | 57748176 | ID=MS.gene046033.t1.exon2;Parent=MS.gene046033.t1 |
| chr4.4 | CDS | 57748176 | 57748277 | 57748176 | ID=cds.MS.gene046033.t1;Parent=MS.gene046033.t1 |
| chr4.4 | exon | 57750104 | 57750918 | 57750104 | ID=MS.gene046033.t1.exon3;Parent=MS.gene046033.t1 |
| chr4.4 | CDS | 57750104 | 57750918 | 57750104 | ID=cds.MS.gene046033.t1;Parent=MS.gene046033.t1 |
| chr4.4 | exon | 57753945 | 57754486 | 57753945 | ID=MS.gene046033.t1.exon4;Parent=MS.gene046033.t1 |
| chr4.4 | CDS | 57753945 | 57754486 | 57753945 | ID=cds.MS.gene046033.t1;Parent=MS.gene046033.t1 |
| Gene Sequence |
| Protein sequence |