Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25516.t1 | XP_013445678.1 | 99.2 | 606 | 5 | 0 | 1 | 606 | 1 | 606 | 0.00E+00 | 1231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25516.t1 | Q9LSQ4 | 80.6 | 609 | 111 | 1 | 1 | 602 | 1 | 609 | 1.4e-299 | 1029.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25516.t1 | A0A072TQB1 | 99.2 | 606 | 5 | 0 | 1 | 606 | 1 | 606 | 0.0e+00 | 1231.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene25516 | -0.826131 | 3.21E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene25516 | -0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene25516 | -0.812459 | 4.20E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene25516 | -0.838167 | 3.38E-57 | -1.69E-46 |
| MS.gene050170 | MS.gene25516 | -0.837693 | 4.47E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene25516 | -0.818307 | 2.10E-52 | -1.69E-46 |
| MS.gene050326 | MS.gene25516 | 0.81214 | 4.92E-51 | -1.69E-46 |
| MS.gene050328 | MS.gene25516 | 0.81365 | 2.30E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene25516 | 0.869479 | 3.00E-66 | -1.69E-46 |
| MS.gene050444 | MS.gene25516 | -0.842457 | 2.56E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene25516 | -0.809982 | 1.45E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene25516 | -0.809108 | 2.23E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene25516 | -0.828208 | 1.02E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene25516 | -0.809489 | 1.85E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene25516 | -0.822108 | 2.83E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene25516 | -0.814666 | 1.37E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene25516 | -0.804683 | 1.92E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene25516 | -0.801134 | 1.04E-48 | -1.69E-46 |
| MS.gene051138 | MS.gene25516 | 0.806387 | 8.43E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene25516 | -0.81683 | 4.52E-52 | -1.69E-46 |
| MS.gene051422 | MS.gene25516 | 0.804382 | 2.22E-49 | -1.69E-46 |
| MS.gene051517 | MS.gene25516 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene25516 | 0.823521 | 1.32E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene25516 | -0.807546 | 4.79E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene25516 | 0.824285 | 8.77E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene25516 | -0.804327 | 2.28E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene25516 | -0.801264 | 9.77E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene25516 | -0.809256 | 2.07E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene25516 | -0.810612 | 1.06E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene25516 | -0.817404 | 3.36E-52 | -1.69E-46 |
| MS.gene054344 | MS.gene25516 | -0.836564 | 8.69E-57 | -1.69E-46 |
| MS.gene054706 | MS.gene25516 | 0.800621 | 1.32E-48 | -1.69E-46 |
| MS.gene05470 | MS.gene25516 | -0.850769 | 1.37E-60 | -1.69E-46 |
| MS.gene054884 | MS.gene25516 | 0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene054941 | MS.gene25516 | 0.80174 | 7.81E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene25516 | -0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene25516 | 0.861469 | 1.00E-63 | -1.69E-46 |
| MS.gene055502 | MS.gene25516 | -0.814001 | 1.92E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene25516 | -0.805696 | 1.18E-49 | -1.69E-46 |
| MS.gene055729 | MS.gene25516 | 0.81132 | 7.43E-51 | -1.69E-46 |
| MS.gene055730 | MS.gene25516 | 0.819289 | 1.26E-52 | -1.69E-46 |
| MS.gene055731 | MS.gene25516 | 0.81651 | 5.33E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene25516 | -0.837836 | 4.11E-57 | -1.69E-46 |
| MS.gene055750 | MS.gene25516 | -0.817653 | 2.95E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene25516 | -0.841478 | 4.64E-58 | -1.69E-46 |
| MS.gene05589 | MS.gene25516 | -0.846124 | 2.64E-59 | -1.69E-46 |
| MS.gene055942 | MS.gene25516 | 0.816725 | 4.77E-52 | -1.69E-46 |
| MS.gene056354 | MS.gene25516 | 0.80735 | 5.28E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene25516 | -0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene25516 | -0.821245 | 4.47E-53 | -1.69E-46 |
| MS.gene056590 | MS.gene25516 | 0.818857 | 1.57E-52 | -1.69E-46 |
| MS.gene056591 | MS.gene25516 | 0.818032 | 2.42E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene25516 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene25516 | -0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene25516 | 0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene25516 | 0.850386 | 1.76E-60 | -1.69E-46 |
| MS.gene056856 | MS.gene25516 | 0.833354 | 5.60E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene25516 | -0.805027 | 1.63E-49 | -1.69E-46 |
| MS.gene057549 | MS.gene25516 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene25516 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene25516 | 0.862154 | 6.20E-64 | -1.69E-46 |
| MS.gene058382 | MS.gene25516 | 0.853437 | 2.39E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene25516 | -0.830298 | 3.18E-55 | -1.69E-46 |
| MS.gene058452 | MS.gene25516 | 0.824418 | 8.16E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene25516 | -0.837371 | 5.41E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene25516 | -0.823411 | 1.41E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene25516 | 0.840789 | 7.04E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene25516 | -0.835705 | 1.44E-56 | -1.69E-46 |
| MS.gene059699 | MS.gene25516 | 0.804416 | 2.18E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene25516 | 0.811763 | 5.95E-51 | -1.69E-46 |
| MS.gene059756 | MS.gene25516 | -0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene25516 | -0.808949 | 2.41E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene25516 | 0.855541 | 5.89E-62 | -1.69E-46 |
| MS.gene060762 | MS.gene25516 | -0.835405 | 1.71E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene25516 | -0.824074 | 9.83E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene25516 | 0.865016 | 8.02E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36841 | MS.gene25516 | PPI |
| MS.gene25516 | MS.gene046366 | PPI |
| MS.gene59583 | MS.gene25516 | PPI |
| MS.gene25516 | MS.gene79749 | PPI |
| MS.gene25516 | MS.gene95299 | PPI |
| MS.gene25516 | MS.gene024458 | PPI |
| MS.gene25516 | MS.gene000373 | PPI |
| MS.gene25516 | MS.gene41352 | PPI |
| MS.gene25516 | MS.gene025922 | PPI |
| MS.gene25516 | MS.gene95297 | PPI |
| MS.gene25516 | MS.gene99230 | PPI |
| MS.gene25516 | MS.gene36841 | PPI |
| MS.gene25516 | MS.gene22809 | PPI |
| MS.gene25516 | MS.gene43375 | PPI |
| MS.gene25516 | MS.gene78774 | PPI |
| MS.gene95295 | MS.gene25516 | PPI |
| MS.gene25516 | MS.gene045936 | PPI |
| MS.gene050633 | MS.gene25516 | PPI |
| MS.gene25516 | MS.gene79751 | PPI |
| MS.gene25516 | MS.gene34650 | PPI |
| MS.gene25516 | MS.gene86023 | PPI |
| MS.gene25516 | MS.gene59582 | PPI |
| MS.gene25516 | MS.gene053964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25516.t1 | MTR_8g467000 | 99.175 | 606 | 5 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1249 |
| MS.gene25516.t1 | MTR_2g081860 | 80.699 | 601 | 113 | 2 | 8 | 605 | 7 | 607 | 0.0 | 1017 |
| MS.gene25516.t1 | MTR_4g045903 | 69.677 | 620 | 159 | 6 | 1 | 602 | 1 | 609 | 0.0 | 907 |
| MS.gene25516.t1 | MTR_0035s0150 | 63.468 | 594 | 199 | 3 | 4 | 597 | 9 | 584 | 0.0 | 801 |
| MS.gene25516.t1 | MTR_5g016320 | 62.585 | 588 | 209 | 3 | 16 | 601 | 22 | 600 | 0.0 | 776 |
| MS.gene25516.t1 | MTR_1g088765 | 52.833 | 600 | 268 | 6 | 7 | 597 | 3 | 596 | 0.0 | 641 |
| MS.gene25516.t1 | MTR_1g088765 | 54.803 | 458 | 194 | 5 | 147 | 597 | 1 | 452 | 3.08e-179 | 515 |
| MS.gene25516.t1 | MTR_8g027970 | 36.700 | 594 | 348 | 7 | 1 | 589 | 1 | 571 | 6.19e-132 | 398 |
| MS.gene25516.t1 | MTR_8g027955 | 36.097 | 579 | 348 | 7 | 15 | 589 | 18 | 578 | 1.13e-131 | 398 |
| MS.gene25516.t1 | MTR_8g027965 | 36.615 | 579 | 345 | 7 | 15 | 589 | 11 | 571 | 1.23e-131 | 397 |
| MS.gene25516.t1 | MTR_8g027920 | 35.456 | 581 | 349 | 8 | 15 | 589 | 11 | 571 | 4.28e-128 | 389 |
| MS.gene25516.t1 | MTR_7g117110 | 36.442 | 579 | 348 | 10 | 16 | 589 | 12 | 575 | 6.25e-128 | 388 |
| MS.gene25516.t1 | MTR_0102s0060 | 34.983 | 586 | 359 | 7 | 15 | 589 | 19 | 593 | 2.46e-126 | 385 |
| MS.gene25516.t1 | MTR_7g117110 | 35.162 | 401 | 248 | 6 | 16 | 414 | 12 | 402 | 9.70e-80 | 258 |
| MS.gene25516.t1 | MTR_7g094190 | 30.069 | 582 | 374 | 14 | 14 | 579 | 4 | 568 | 1.22e-75 | 252 |
| MS.gene25516.t1 | MTR_7g094190 | 32.419 | 401 | 248 | 8 | 188 | 579 | 82 | 468 | 2.83e-62 | 214 |
| MS.gene25516.t1 | MTR_8g037720 | 34.604 | 341 | 182 | 7 | 255 | 589 | 126 | 431 | 4.22e-61 | 209 |
| MS.gene25516.t1 | MTR_8g037720 | 40.404 | 99 | 59 | 0 | 16 | 114 | 3 | 101 | 4.89e-17 | 84.3 |
| MS.gene25516.t1 | MTR_1g047730 | 38.290 | 269 | 139 | 5 | 324 | 589 | 114 | 358 | 4.15e-53 | 186 |
| MS.gene25516.t1 | MTR_3g023280 | 53.211 | 109 | 49 | 1 | 491 | 597 | 19 | 127 | 3.26e-30 | 115 |
| MS.gene25516.t1 | MTR_7g094330 | 30.769 | 234 | 122 | 4 | 188 | 420 | 82 | 276 | 3.31e-30 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25516.t1 | AT5G54510 | 80.624 | 609 | 111 | 1 | 1 | 602 | 1 | 609 | 0.0 | 1046 |
| MS.gene25516.t1 | AT4G27260 | 79.967 | 609 | 115 | 1 | 1 | 602 | 1 | 609 | 0.0 | 1040 |
| MS.gene25516.t1 | AT2G14960 | 63.167 | 600 | 200 | 3 | 4 | 601 | 9 | 589 | 0.0 | 796 |
| MS.gene25516.t1 | AT4G37390 | 62.458 | 594 | 211 | 5 | 12 | 601 | 18 | 603 | 0.0 | 784 |
| MS.gene25516.t1 | AT2G23170 | 61.794 | 602 | 211 | 6 | 4 | 601 | 9 | 595 | 0.0 | 771 |
| MS.gene25516.t1 | AT1G59500 | 59.664 | 595 | 220 | 6 | 12 | 601 | 18 | 597 | 0.0 | 736 |
| MS.gene25516.t1 | AT1G28130 | 56.757 | 592 | 243 | 8 | 18 | 597 | 14 | 604 | 0.0 | 698 |
| MS.gene25516.t1 | AT2G47750 | 52.203 | 590 | 264 | 8 | 14 | 597 | 8 | 585 | 0.0 | 615 |
| MS.gene25516.t1 | AT1G23160 | 48.983 | 590 | 274 | 5 | 9 | 589 | 6 | 577 | 0.0 | 580 |
| MS.gene25516.t1 | AT5G13360 | 49.239 | 591 | 276 | 7 | 14 | 595 | 88 | 663 | 0.0 | 573 |
| MS.gene25516.t1 | AT5G13370 | 48.900 | 591 | 279 | 8 | 14 | 595 | 10 | 586 | 0.0 | 573 |
| MS.gene25516.t1 | AT5G13360 | 49.239 | 591 | 276 | 7 | 14 | 595 | 10 | 585 | 0.0 | 573 |
| MS.gene25516.t1 | AT5G13360 | 49.239 | 591 | 276 | 7 | 14 | 595 | 10 | 585 | 0.0 | 573 |
| MS.gene25516.t1 | AT1G28130 | 59.653 | 461 | 176 | 6 | 147 | 597 | 1 | 461 | 0.0 | 564 |
| MS.gene25516.t1 | AT5G13320 | 47.660 | 577 | 277 | 4 | 21 | 589 | 15 | 574 | 0.0 | 563 |
| MS.gene25516.t1 | AT5G13320 | 47.660 | 577 | 277 | 4 | 21 | 589 | 30 | 589 | 0.0 | 563 |
| MS.gene25516.t1 | AT5G13320 | 47.660 | 577 | 277 | 4 | 21 | 589 | 15 | 574 | 0.0 | 563 |
| MS.gene25516.t1 | AT5G13380 | 46.678 | 587 | 289 | 8 | 18 | 595 | 44 | 615 | 0.0 | 549 |
| MS.gene25516.t1 | AT5G13350 | 46.701 | 591 | 292 | 7 | 15 | 596 | 11 | 587 | 0.0 | 545 |
| MS.gene25516.t1 | AT5G13350 | 46.701 | 591 | 292 | 7 | 15 | 596 | 11 | 587 | 0.0 | 545 |
| MS.gene25516.t1 | AT1G48660 | 44.387 | 579 | 300 | 5 | 21 | 593 | 10 | 572 | 1.47e-180 | 523 |
| MS.gene25516.t1 | AT5G51470 | 45.927 | 577 | 291 | 4 | 19 | 591 | 14 | 573 | 1.83e-180 | 523 |
| MS.gene25516.t1 | AT1G48660 | 44.541 | 577 | 299 | 5 | 21 | 593 | 10 | 569 | 1.34e-179 | 520 |
| MS.gene25516.t1 | AT1G48670 | 43.599 | 578 | 254 | 7 | 21 | 593 | 11 | 521 | 3.59e-160 | 469 |
| MS.gene25516.t1 | AT5G51470 | 45.272 | 497 | 252 | 3 | 99 | 591 | 3 | 483 | 1.43e-148 | 438 |
| MS.gene25516.t1 | AT1G48670 | 50.000 | 424 | 193 | 3 | 174 | 593 | 2 | 410 | 3.38e-145 | 427 |
| MS.gene25516.t1 | AT2G46370 | 37.919 | 596 | 338 | 12 | 6 | 589 | 8 | 583 | 1.26e-133 | 403 |
| MS.gene25516.t1 | AT2G46370 | 38.554 | 581 | 330 | 11 | 16 | 589 | 12 | 572 | 1.54e-133 | 402 |
| MS.gene25516.t1 | AT2G46370 | 38.554 | 581 | 330 | 11 | 16 | 589 | 12 | 572 | 1.54e-133 | 402 |
| MS.gene25516.t1 | AT4G03400 | 34.701 | 585 | 362 | 5 | 17 | 589 | 11 | 587 | 2.98e-122 | 374 |
| MS.gene25516.t1 | AT4G03400 | 34.701 | 585 | 362 | 5 | 17 | 589 | 11 | 587 | 2.98e-122 | 374 |
| MS.gene25516.t1 | AT2G46370 | 38.943 | 511 | 287 | 9 | 84 | 589 | 3 | 493 | 6.79e-117 | 357 |
| MS.gene25516.t1 | AT1G48690 | 38.919 | 185 | 109 | 2 | 21 | 205 | 10 | 190 | 1.47e-38 | 140 |
Find 117 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACAGTATATTCCTATTT+TGG | 0.111812 | 8.2:+42369240 | MS.gene25516:CDS |
| GGAGCCCACTTTGGACATTT+AGG | 0.154824 | 8.2:-42370425 | None:intergenic |
| CAAGTTTAGGATCAGGTTTA+AGG | 0.254241 | 8.2:-42369114 | None:intergenic |
| TTTGTTCCTGGTTTAGAAAA+AGG | 0.255175 | 8.2:+42368719 | MS.gene25516:CDS |
| ATGGATTATGCCATTAGTTT+AGG | 0.291005 | 8.2:+42370308 | MS.gene25516:CDS |
| TGGATAAAATCAGCAAGTTT+AGG | 0.292869 | 8.2:-42369127 | None:intergenic |
| TTGCTATAATGATCCAAAAT+AGG | 0.297088 | 8.2:-42369253 | None:intergenic |
| ACTGTTGAGTCAGTAATTAA+AGG | 0.298239 | 8.2:-42369070 | None:intergenic |
| GAGCCCACTTTGGACATTTA+GGG | 0.311971 | 8.2:-42370424 | None:intergenic |
| ATAAGGTCTATCTCTAAAAT+AGG | 0.318744 | 8.2:-42368834 | None:intergenic |
| GTGATGAGCCAGTTTGTTCC+TGG | 0.324174 | 8.2:+42368707 | MS.gene25516:CDS |
| GGACACAGTACAGTTTCATT+TGG | 0.346171 | 8.2:-42368881 | None:intergenic |
| CCAACAATTGAAGACGAGTT+AGG | 0.350482 | 8.2:+42368650 | MS.gene25516:CDS |
| CCTAACTCGTCTTCAATTGT+TGG | 0.355115 | 8.2:-42368650 | None:intergenic |
| CTTGGCAGGGGATAATTACT+AGG | 0.356717 | 8.2:+42369170 | MS.gene25516:CDS |
| TGAGATCAAGATTGTTGAAC+AGG | 0.358733 | 8.2:+42370268 | MS.gene25516:CDS |
| TTGTGCAGTTCTGGGACATC+TGG | 0.365207 | 8.2:+42368608 | MS.gene25516:intron |
| TTGTAATAGCTAGTTAAAAC+TGG | 0.369819 | 8.2:-42368806 | None:intergenic |
| TCTTTCTCATTAAGAGATCT+AGG | 0.375377 | 8.2:-42369448 | None:intergenic |
| GGGCTTGTGTAGTTTGTGTA+AGG | 0.378276 | 8.2:-42368860 | None:intergenic |
| CTGTTGAGTCAGTAATTAAA+GGG | 0.382825 | 8.2:-42369069 | None:intergenic |
| CAACGTTTGCATTGCGAGAC+AGG | 0.392772 | 8.2:-42368140 | None:intergenic |
| AGGGGATAATTACTAGGCTT+TGG | 0.396785 | 8.2:+42369176 | MS.gene25516:CDS |
| CCTAGTGAGAAACTCGGAAA+TGG | 0.402657 | 8.2:-42368307 | None:intergenic |
| GAGAAACTCGGAAATGGGTT+TGG | 0.402818 | 8.2:-42368301 | None:intergenic |
| ATATCTTCATATGAAATAAC+AGG | 0.406853 | 8.2:-42368225 | None:intergenic |
| CTTTGCAATGATATTAGAAC+TGG | 0.408730 | 8.2:+42369037 | MS.gene25516:CDS |
| GACACAGTACAGTTTCATTT+GGG | 0.411007 | 8.2:-42368880 | None:intergenic |
| GTTGGTGCTGTATTTGCCTC+TGG | 0.411899 | 8.2:+42368971 | MS.gene25516:CDS |
| ATGTATTCTCAACTGCTTTG+TGG | 0.413819 | 8.2:+42368920 | MS.gene25516:CDS |
| TTGAACTTGGTCAGCGTTTG+AGG | 0.418697 | 8.2:-42368097 | None:intergenic |
| AAATCAGCAAGTTTAGGATC+AGG | 0.419446 | 8.2:-42369121 | None:intergenic |
| TTTCTAAACCAGGAACAAAC+TGG | 0.423901 | 8.2:-42368715 | None:intergenic |
| ACATCCACATACTTAGTATT+AGG | 0.428267 | 8.2:-42369199 | None:intergenic |
| TACATGCTTTGGTATGAATC+AGG | 0.429558 | 8.2:-42368902 | None:intergenic |
| CAGGTCACTATGTCCTCTAC+TGG | 0.430139 | 8.2:+42370117 | MS.gene25516:CDS |
| AATTGAAGCACCTAAACTAA+TGG | 0.431562 | 8.2:-42370318 | None:intergenic |
| GCAGTTGAGAATACATGCTT+TGG | 0.432411 | 8.2:-42368913 | None:intergenic |
| GCTTCTAGTGAATGTTACTT+TGG | 0.432831 | 8.2:+42369304 | MS.gene25516:CDS |
| GTCTGCATAGCTAGTGTATT+CGG | 0.433199 | 8.2:-42370081 | None:intergenic |
| TTGGAGATACGGTCAATATC+AGG | 0.434074 | 8.2:-42368252 | None:intergenic |
| GCAGACACAACAACAATTCC+AGG | 0.444605 | 8.2:+42370098 | MS.gene25516:CDS |
| TTCTAATATCATTGCAAAGA+AGG | 0.447565 | 8.2:-42369033 | None:intergenic |
| CCGAGTTGGTGATGTGTTGA+AGG | 0.465454 | 8.2:+42369905 | MS.gene25516:CDS |
| GGTGATGTGTTGAAGGTAGC+TGG | 0.472026 | 8.2:+42369912 | MS.gene25516:CDS |
| CAACAATTGAAGACGAGTTA+GGG | 0.472679 | 8.2:+42368651 | MS.gene25516:CDS |
| AAATGTCCAAAGTGGGCTCC+TGG | 0.483198 | 8.2:+42370428 | MS.gene25516:CDS |
| TTAGGTTCCTTGAGAAACAT+TGG | 0.484372 | 8.2:+42369008 | MS.gene25516:CDS |
| TTGTAGCCTCTAGGTGCCTC+AGG | 0.487179 | 8.2:-42368027 | None:intergenic |
| TAGTTTGTGTAAGGGTCATA+AGG | 0.487342 | 8.2:-42368851 | None:intergenic |
| TGAGAAAGAGCAGAAAGAGT+TGG | 0.487483 | 8.2:+42369462 | MS.gene25516:CDS |
| CGCTGACCAAGTTCAACAAA+AGG | 0.497019 | 8.2:+42368104 | MS.gene25516:CDS |
| GCCTCTAGGTGCCTCAGGCA+TGG | 0.502602 | 8.2:-42368022 | None:intergenic |
| ACTCAACAGCGTTTATCGAC+AGG | 0.506737 | 8.2:+42370214 | MS.gene25516:CDS |
| CGGAAATGGGTTTGGAGCAA+AGG | 0.507191 | 8.2:-42368293 | None:intergenic |
| CTAGTGAGAAACTCGGAAAT+GGG | 0.511635 | 8.2:-42368306 | None:intergenic |
| TAACATCCTCAATGAAGTCC+AGG | 0.517548 | 8.2:-42368074 | None:intergenic |
| CTTGTTGTCACTACTTATGC+TGG | 0.517694 | 8.2:+42369523 | MS.gene25516:CDS |
| AGGTGTCACCATTGGAGATA+CGG | 0.520760 | 8.2:-42368263 | None:intergenic |
| CTTAAAAGATATGATCTCAA+TGG | 0.521709 | 8.2:+42368168 | MS.gene25516:CDS |
| GAGTTCAAGAGTTCAACAAC+AGG | 0.523704 | 8.2:-42370377 | None:intergenic |
| GGACTATACCGTTACCGAGT+TGG | 0.523842 | 8.2:+42369891 | MS.gene25516:intron |
| GGAACAAACTGGCTCATCAC+TGG | 0.525232 | 8.2:-42368704 | None:intergenic |
| GATAGGAGAGGTGTCACCAT+TGG | 0.527208 | 8.2:-42368271 | None:intergenic |
| TATGTGGATGTTATTGTGAC+TGG | 0.529295 | 8.2:+42369211 | MS.gene25516:CDS |
| ATGGGTTTGGAGCAAAGGAT+AGG | 0.537304 | 8.2:-42368288 | None:intergenic |
| GAAGGTTCCAATGTTTCTCA+AGG | 0.537967 | 8.2:-42369015 | None:intergenic |
| GGCTTGTGTAGTTTGTGTAA+GGG | 0.539250 | 8.2:-42368859 | None:intergenic |
| TTGTTGAACTCTTGAACTCA+AGG | 0.540254 | 8.2:+42370381 | MS.gene25516:CDS |
| TCGGACACGGTTGCATCGAA+TGG | 0.543360 | 8.2:-42370062 | None:intergenic |
| CCATTTCCGAGTTTCTCACT+AGG | 0.547573 | 8.2:+42368307 | MS.gene25516:CDS |
| TTATCGACAGGGCCGTGTCT+CGG | 0.550318 | 8.2:+42370226 | MS.gene25516:CDS |
| GAACTTGTTGATGTCAAACT+TGG | 0.554297 | 8.2:+42369487 | MS.gene25516:CDS |
| TTATGACCAGGAGCCCACTT+TGG | 0.554897 | 8.2:-42370434 | None:intergenic |
| TTGGCCTAATACTAAGTATG+TGG | 0.556473 | 8.2:+42369195 | MS.gene25516:CDS |
| GGGCTCCTGGTCATAAGCAA+TGG | 0.566694 | 8.2:+42370441 | MS.gene25516:CDS |
| TGCAGTTCTGGGACATCTGG+AGG | 0.569833 | 8.2:+42368611 | MS.gene25516:intron |
| ACTTCACTAGGTTGACAAAG+AGG | 0.571857 | 8.2:-42369340 | None:intergenic |
| CTTCACTAGGTTGACAAAGA+GGG | 0.573620 | 8.2:-42369339 | None:intergenic |
| ACACCATTACTTCTATTCAC+AGG | 0.573990 | 8.2:-42369406 | None:intergenic |
| TTGCCTGTGAATAGAAGTAA+TGG | 0.577251 | 8.2:+42369403 | MS.gene25516:CDS |
| TGGTCTTTGTCAAAACAAAG+AGG | 0.579177 | 8.2:+42368940 | MS.gene25516:CDS |
| TTGATCCATTGCTTATGACC+AGG | 0.582743 | 8.2:-42370446 | None:intergenic |
| AATTCAAAGTAGCACATGGT+AGG | 0.583971 | 8.2:-42369379 | None:intergenic |
| TCAGAGTGAGTTCCCAGTAG+AGG | 0.584102 | 8.2:-42370130 | None:intergenic |
| GGTGCAAACTTCACACACCT+TGG | 0.586326 | 8.2:-42370356 | None:intergenic |
| CCTAATGTTTATAAAATCTG+AGG | 0.588832 | 8.2:+42368754 | MS.gene25516:CDS |
| TCAACAAGGTTGTAGCCTCT+AGG | 0.591413 | 8.2:-42368036 | None:intergenic |
| TGTTGAACTCTTGAACTCAA+GGG | 0.593725 | 8.2:+42370382 | MS.gene25516:CDS |
| TCAACAATCTTGATCTCAAG+CGG | 0.595363 | 8.2:-42370263 | None:intergenic |
| CGTGTCTCGGACAAATCTAT+CGG | 0.596336 | 8.2:+42370239 | MS.gene25516:CDS |
| AAATCTGAGGCTAAAACACC+TGG | 0.603615 | 8.2:+42368767 | MS.gene25516:CDS |
| CAGTAGAGGACATAGTGACC+TGG | 0.605308 | 8.2:-42370116 | None:intergenic |
| CGGCACACAAAGTTGAATTG+CGG | 0.606409 | 8.2:-42369951 | None:intergenic |
| GATATTGACCGTATCTCCAA+TGG | 0.606450 | 8.2:+42368255 | MS.gene25516:CDS |
| CCTTCAACACATCACCAACT+CGG | 0.608774 | 8.2:-42369905 | None:intergenic |
| CACCTGGTGGAATTGTAGCT+AGG | 0.610611 | 8.2:+42368783 | MS.gene25516:CDS |
| AGGTCACTATGTCCTCTACT+GGG | 0.614973 | 8.2:+42370118 | MS.gene25516:CDS |
| GGCCTAGCTACAATTCCACC+AGG | 0.617990 | 8.2:-42368785 | None:intergenic |
| GCATACATAGTGCAAACAAG+TGG | 0.618340 | 8.2:-42369283 | None:intergenic |
| TTTGGAGCAAAGGATAGGAG+AGG | 0.620341 | 8.2:-42368283 | None:intergenic |
| TCTGAGGCTAAAACACCTGG+TGG | 0.620910 | 8.2:+42368770 | MS.gene25516:CDS |
| CGATAGATTTGTCCGAGACA+CGG | 0.624248 | 8.2:-42370238 | None:intergenic |
| CTCAACAGCGTTTATCGACA+GGG | 0.626628 | 8.2:+42370215 | MS.gene25516:CDS |
| ACACATCACCAACTCGGTAA+CGG | 0.631028 | 8.2:-42369899 | None:intergenic |
| TAGCCCTAAATGTCCAAAGT+GGG | 0.635686 | 8.2:+42370421 | MS.gene25516:CDS |
| CAATTGAAGACGAGTTAGGG+AGG | 0.639368 | 8.2:+42368654 | MS.gene25516:CDS |
| AGTTGAGCTTCAAAATGCAA+TGG | 0.645898 | 8.2:+42370016 | MS.gene25516:CDS |
| TTAGCCCTAAATGTCCAAAG+TGG | 0.647825 | 8.2:+42370420 | MS.gene25516:CDS |
| AACAACACACACCATGCCTG+AGG | 0.659606 | 8.2:+42368011 | None:intergenic |
| GACGAACCTAGTGAGAAACT+CGG | 0.661604 | 8.2:-42368313 | None:intergenic |
| AATAGCCCTTATAAAACCAG+AGG | 0.675707 | 8.2:-42368987 | None:intergenic |
| ATAGCTAGTGTATTCGGACA+CGG | 0.679053 | 8.2:-42370075 | None:intergenic |
| AGAGTGTAAGACACTTCACT+AGG | 0.687486 | 8.2:-42369352 | None:intergenic |
| GAGATCAAGATTGTTGAACA+GGG | 0.711799 | 8.2:+42370269 | MS.gene25516:CDS |
| TTAATCAGTACAAGACACCA+AGG | 0.718724 | 8.2:+42370339 | MS.gene25516:CDS |
| ACCATGCCTGAGGCACCTAG+AGG | 0.728145 | 8.2:+42368021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATTAAATTAAAAGTT+TGG | - | chr8.2:42369595-42369614 | None:intergenic | 10.0% |
| !!! | TCTAACTTTTTCTTATATAA+AGG | + | chr8.2:42368452-42368471 | MS.gene25516:intron | 15.0% |
| !! | ATATCTTCATATGAAATAAC+AGG | - | chr8.2:42368228-42368247 | None:intergenic | 20.0% |
| !! | TCATCAAAAGTTAATGTATA+TGG | + | chr8.2:42368392-42368411 | MS.gene25516:intron | 20.0% |
| !! | TTCTATATATTAGACAAGTT+TGG | + | chr8.2:42368369-42368388 | MS.gene25516:intron | 20.0% |
| !! | TTTATATATGTTACTCTCTT+TGG | - | chr8.2:42368479-42368498 | None:intergenic | 20.0% |
| !!! | ATGTAAGTGGTTTTAAATTT+TGG | - | chr8.2:42368419-42368438 | None:intergenic | 20.0% |
| !!! | GTTTGTCAATTTTTTTTCTT+AGG | + | chr8.2:42369870-42369889 | MS.gene25516:intron | 20.0% |
| ! | CCTAATGTTTATAAAATCTG+AGG | + | chr8.2:42368754-42368773 | MS.gene25516:CDS | 25.0% |
| ! | CTTAAAAGATATGATCTCAA+TGG | + | chr8.2:42368168-42368187 | MS.gene25516:CDS | 25.0% |
| ! | TTCTAATATCATTGCAAAGA+AGG | - | chr8.2:42369036-42369055 | None:intergenic | 25.0% |
| ! | TTGCTATAATGATCCAAAAT+AGG | - | chr8.2:42369256-42369275 | None:intergenic | 25.0% |
| ! | TTGTAATAGCTAGTTAAAAC+TGG | - | chr8.2:42368809-42368828 | None:intergenic | 25.0% |
| !! | AATTTTTACTACACTCAGTT+TGG | - | chr8.2:42369150-42369169 | None:intergenic | 25.0% |
| !! | ATTTTGGATCATTATAGCAA+TGG | + | chr8.2:42369256-42369275 | MS.gene25516:CDS | 25.0% |
| !! | CCTCAGATTTTATAAACATT+AGG | - | chr8.2:42368757-42368776 | None:intergenic | 25.0% |
| !!! | AAATTTATTTTGTGCAGTTC+TGG | + | chr8.2:42368599-42368618 | MS.gene25516:intron | 25.0% |
| !!! | AATTTATTTTGTGCAGTTCT+GGG | + | chr8.2:42368600-42368619 | MS.gene25516:intron | 25.0% |
| !!! | ATAAGGTCTATCTCTAAAAT+AGG | - | chr8.2:42368837-42368856 | None:intergenic | 25.0% |
| !!! | TCAAAACAAAGAGGTTTTAA+GGG | + | chr8.2:42368949-42368968 | MS.gene25516:CDS | 25.0% |
| !!! | TTTTTTGAACTGCTATTGAT+GGG | + | chr8.2:42368560-42368579 | MS.gene25516:intron | 25.0% |
| !!! | TTTTTTTGAACTGCTATTGA+TGG | + | chr8.2:42368559-42368578 | MS.gene25516:intron | 25.0% |
| !!! | TTTTTTTGTTCTGTTCAACA+AGG | - | chr8.2:42368053-42368072 | None:intergenic | 25.0% |
| ACATCCACATACTTAGTATT+AGG | - | chr8.2:42369202-42369221 | None:intergenic | 30.0% | |
| ACTGTTGAGTCAGTAATTAA+AGG | - | chr8.2:42369073-42369092 | None:intergenic | 30.0% | |
| CAAAAATTCAAAGTAGCACA+TGG | - | chr8.2:42369386-42369405 | None:intergenic | 30.0% | |
| CTGAGTGTAGTAAAAATTCT+TGG | + | chr8.2:42369152-42369171 | MS.gene25516:CDS | 30.0% | |
| CTGTTGAGTCAGTAATTAAA+GGG | - | chr8.2:42369072-42369091 | None:intergenic | 30.0% | |
| CTTTGCAATGATATTAGAAC+TGG | + | chr8.2:42369037-42369056 | MS.gene25516:CDS | 30.0% | |
| TAATATATAGAACCAGAGGA+AGG | - | chr8.2:42368361-42368380 | None:intergenic | 30.0% | |
| TCAACAAATGTTGATGTAAG+TGG | - | chr8.2:42368432-42368451 | None:intergenic | 30.0% | |
| TCTTTCTCATTAAGAGATCT+AGG | - | chr8.2:42369451-42369470 | None:intergenic | 30.0% | |
| TGAACAGAACAAAAAAATCC+TGG | + | chr8.2:42368056-42368075 | MS.gene25516:CDS | 30.0% | |
| TGGATAAAATCAGCAAGTTT+AGG | - | chr8.2:42369130-42369149 | None:intergenic | 30.0% | |
| TGTAGTAAAAATTCTTGGCA+GGG | + | chr8.2:42369157-42369176 | MS.gene25516:CDS | 30.0% | |
| TGTCTAATATATAGAACCAG+AGG | - | chr8.2:42368365-42368384 | None:intergenic | 30.0% | |
| TGTGTAACTGTAAACAGATT+TGG | + | chr8.2:42369804-42369823 | MS.gene25516:intron | 30.0% | |
| TTGTTCCTGGTTTAGAAAAA+GGG | + | chr8.2:42368720-42368739 | MS.gene25516:CDS | 30.0% | |
| TTTGTTCCTGGTTTAGAAAA+AGG | + | chr8.2:42368719-42368738 | MS.gene25516:CDS | 30.0% | |
| ! | AATTGAAGCACCTAAACTAA+TGG | - | chr8.2:42370321-42370340 | None:intergenic | 30.0% |
| ! | ATGGATTATGCCATTAGTTT+AGG | + | chr8.2:42370308-42370327 | MS.gene25516:CDS | 30.0% |
| ! | GTCAAAACAAAGAGGTTTTA+AGG | + | chr8.2:42368948-42368967 | MS.gene25516:CDS | 30.0% |
| ! | GTCACAGTATATTCCTATTT+TGG | + | chr8.2:42369240-42369259 | MS.gene25516:CDS | 30.0% |
| !!! | ATTTGCCTCTGGTTTTATAA+GGG | + | chr8.2:42368982-42369001 | MS.gene25516:CDS | 30.0% |
| !!! | TATTTGCCTCTGGTTTTATA+AGG | + | chr8.2:42368981-42369000 | MS.gene25516:CDS | 30.0% |
| !!! | TGCTCAATACCACATTTTTT+CGG | - | chr8.2:42369974-42369993 | None:intergenic | 30.0% |
| AAAAATCCTGGACTTCATTG+AGG | + | chr8.2:42368068-42368087 | MS.gene25516:CDS | 35.0% | |
| AATAGCCCTTATAAAACCAG+AGG | - | chr8.2:42368990-42369009 | None:intergenic | 35.0% | |
| AATTCAAAGTAGCACATGGT+AGG | - | chr8.2:42369382-42369401 | None:intergenic | 35.0% | |
| ACACCATTACTTCTATTCAC+AGG | - | chr8.2:42369409-42369428 | None:intergenic | 35.0% | |
| AGTTGAGCTTCAAAATGCAA+TGG | + | chr8.2:42370016-42370035 | MS.gene25516:CDS | 35.0% | |
| ATGTATTCTCAACTGCTTTG+TGG | + | chr8.2:42368920-42368939 | MS.gene25516:CDS | 35.0% | |
| CAACAATTGAAGACGAGTTA+GGG | + | chr8.2:42368651-42368670 | MS.gene25516:CDS | 35.0% | |
| CAATCTTCAAAAACACAAGG+TGG | - | chr8.2:42370173-42370192 | None:intergenic | 35.0% | |
| CAGCAATCTTCAAAAACACA+AGG | - | chr8.2:42370176-42370195 | None:intergenic | 35.0% | |
| CATACAAATAATCCTTCCTC+TGG | + | chr8.2:42368346-42368365 | MS.gene25516:intron | 35.0% | |
| GACACAGTACAGTTTCATTT+GGG | - | chr8.2:42368883-42368902 | None:intergenic | 35.0% | |
| GAGATCAAGATTGTTGAACA+GGG | + | chr8.2:42370269-42370288 | MS.gene25516:CDS | 35.0% | |
| GTAGTAAAAATTCTTGGCAG+GGG | + | chr8.2:42369158-42369177 | MS.gene25516:CDS | 35.0% | |
| GTGTAGTAAAAATTCTTGGC+AGG | + | chr8.2:42369156-42369175 | MS.gene25516:CDS | 35.0% | |
| TACATGCTTTGGTATGAATC+AGG | - | chr8.2:42368905-42368924 | None:intergenic | 35.0% | |
| TATGTGGATGTTATTGTGAC+TGG | + | chr8.2:42369211-42369230 | MS.gene25516:CDS | 35.0% | |
| TCAACAATCTTGATCTCAAG+CGG | - | chr8.2:42370266-42370285 | None:intergenic | 35.0% | |
| TGAGATCAAGATTGTTGAAC+AGG | + | chr8.2:42370268-42370287 | MS.gene25516:CDS | 35.0% | |
| TGGTCTTTGTCAAAACAAAG+AGG | + | chr8.2:42368940-42368959 | MS.gene25516:CDS | 35.0% | |
| TGTTGAACTCTTGAACTCAA+GGG | + | chr8.2:42370382-42370401 | MS.gene25516:CDS | 35.0% | |
| TTAATCAGTACAAGACACCA+AGG | + | chr8.2:42370339-42370358 | MS.gene25516:CDS | 35.0% | |
| TTAGGTTCCTTGAGAAACAT+TGG | + | chr8.2:42369008-42369027 | MS.gene25516:CDS | 35.0% | |
| TTGCCTGTGAATAGAAGTAA+TGG | + | chr8.2:42369403-42369422 | MS.gene25516:CDS | 35.0% | |
| TTGGCCTAATACTAAGTATG+TGG | + | chr8.2:42369195-42369214 | MS.gene25516:CDS | 35.0% | |
| TTGTTGAACTCTTGAACTCA+AGG | + | chr8.2:42370381-42370400 | MS.gene25516:CDS | 35.0% | |
| TTTCTAAACCAGGAACAAAC+TGG | - | chr8.2:42368718-42368737 | None:intergenic | 35.0% | |
| ! | AAATCAGCAAGTTTAGGATC+AGG | - | chr8.2:42369124-42369143 | None:intergenic | 35.0% |
| ! | AGAGAACCTTTTGTTGAACT+TGG | - | chr8.2:42368113-42368132 | None:intergenic | 35.0% |
| ! | CAAGTTTAGGATCAGGTTTA+AGG | - | chr8.2:42369117-42369136 | None:intergenic | 35.0% |
| ! | GCTTCTAGTGAATGTTACTT+TGG | + | chr8.2:42369304-42369323 | MS.gene25516:CDS | 35.0% |
| ! | GGGTACTTTTGATAAGCTAA+TGG | + | chr8.2:42370289-42370308 | MS.gene25516:CDS | 35.0% |
| ! | TAGTTTGTGTAAGGGTCATA+AGG | - | chr8.2:42368854-42368873 | None:intergenic | 35.0% |
| !! | GAACTTGTTGATGTCAAACT+TGG | + | chr8.2:42369487-42369506 | MS.gene25516:CDS | 35.0% |
| !!! | AACAAAGAGGTTTTAAGGGT+TGG | + | chr8.2:42368953-42368972 | MS.gene25516:CDS | 35.0% |
| !!! | AACAGGCAAGAGTTTTTTGA+AGG | - | chr8.2:42368211-42368230 | None:intergenic | 35.0% |
| !!! | AGAGTTTTTTGAAGGTGTCA+CGG | - | chr8.2:42368203-42368222 | None:intergenic | 35.0% |
| !!! | CTGGTTTTATAAGGGCTATT+AGG | + | chr8.2:42368990-42369009 | MS.gene25516:CDS | 35.0% |
| AGAGTGTAAGACACTTCACT+AGG | - | chr8.2:42369355-42369374 | None:intergenic | 40.0% | |
| AGGGGATAATTACTAGGCTT+TGG | + | chr8.2:42369176-42369195 | MS.gene25516:CDS | 40.0% | |
| ATAGCTAGTGTATTCGGACA+CGG | - | chr8.2:42370078-42370097 | None:intergenic | 40.0% | |
| CAGTGAGATAGACAGAATCA+CGG | - | chr8.2:42369765-42369784 | None:intergenic | 40.0% | |
| CCAACAATTGAAGACGAGTT+AGG | + | chr8.2:42368650-42368669 | MS.gene25516:CDS | 40.0% | |
| CCTAACTCGTCTTCAATTGT+TGG | - | chr8.2:42368653-42368672 | None:intergenic | 40.0% | |
| CCTGGTTTAGAAAAAGGGAA+AGG | + | chr8.2:42368725-42368744 | MS.gene25516:CDS | 40.0% | |
| CTAGTGAGAAACTCGGAAAT+GGG | - | chr8.2:42368309-42368328 | None:intergenic | 40.0% | |
| CTTTGTGTGCCGAAAAAATG+TGG | + | chr8.2:42369962-42369981 | MS.gene25516:CDS | 40.0% | |
| GAAGGTTCCAATGTTTCTCA+AGG | - | chr8.2:42369018-42369037 | None:intergenic | 40.0% | |
| GAGTTCAAGAGTTCAACAAC+AGG | - | chr8.2:42370380-42370399 | None:intergenic | 40.0% | |
| GATATTGACCGTATCTCCAA+TGG | + | chr8.2:42368255-42368274 | MS.gene25516:CDS | 40.0% | |
| GCAGTTGAGAATACATGCTT+TGG | - | chr8.2:42368916-42368935 | None:intergenic | 40.0% | |
| GCATACATAGTGCAAACAAG+TGG | - | chr8.2:42369286-42369305 | None:intergenic | 40.0% | |
| GGACACAGTACAGTTTCATT+TGG | - | chr8.2:42368884-42368903 | None:intergenic | 40.0% | |
| GTCTGCATAGCTAGTGTATT+CGG | - | chr8.2:42370084-42370103 | None:intergenic | 40.0% | |
| TAACATCCTCAATGAAGTCC+AGG | - | chr8.2:42368077-42368096 | None:intergenic | 40.0% | |
| TAGCCCTAAATGTCCAAAGT+GGG | + | chr8.2:42370421-42370440 | MS.gene25516:CDS | 40.0% | |
| TGAGAAAGAGCAGAAAGAGT+TGG | + | chr8.2:42369462-42369481 | MS.gene25516:CDS | 40.0% | |
| TTAGCCCTAAATGTCCAAAG+TGG | + | chr8.2:42370420-42370439 | MS.gene25516:CDS | 40.0% | |
| TTGATCCATTGCTTATGACC+AGG | - | chr8.2:42370449-42370468 | None:intergenic | 40.0% | |
| TTGGAGATACGGTCAATATC+AGG | - | chr8.2:42368255-42368274 | None:intergenic | 40.0% | |
| ! | AAATCTGAGGCTAAAACACC+TGG | + | chr8.2:42368767-42368786 | MS.gene25516:CDS | 40.0% |
| ! | ACTTCACTAGGTTGACAAAG+AGG | - | chr8.2:42369343-42369362 | None:intergenic | 40.0% |
| ! | CCTTTCCCTTTTTCTAAACC+AGG | - | chr8.2:42368728-42368747 | None:intergenic | 40.0% |
| ! | CTTCACTAGGTTGACAAAGA+GGG | - | chr8.2:42369342-42369361 | None:intergenic | 40.0% |
| ! | CTTGTTGTCACTACTTATGC+TGG | + | chr8.2:42369523-42369542 | MS.gene25516:CDS | 40.0% |
| ! | GGCTTGTGTAGTTTGTGTAA+GGG | - | chr8.2:42368862-42368881 | None:intergenic | 40.0% |
| ACACATCACCAACTCGGTAA+CGG | - | chr8.2:42369902-42369921 | None:intergenic | 45.0% | |
| ACTCAACAGCGTTTATCGAC+AGG | + | chr8.2:42370214-42370233 | MS.gene25516:CDS | 45.0% | |
| AGGTCACTATGTCCTCTACT+GGG | + | chr8.2:42370118-42370137 | MS.gene25516:CDS | 45.0% | |
| CAATTGAAGACGAGTTAGGG+AGG | + | chr8.2:42368654-42368673 | MS.gene25516:CDS | 45.0% | |
| CCACGTGATTGTAGCAATTG+AGG | - | chr8.2:42369659-42369678 | None:intergenic | 45.0% | |
| CCATTTCCGAGTTTCTCACT+AGG | + | chr8.2:42368307-42368326 | MS.gene25516:CDS | 45.0% | |
| CCTAGTGAGAAACTCGGAAA+TGG | - | chr8.2:42368310-42368329 | None:intergenic | 45.0% | |
| CCTCAATTGCTACAATCACG+TGG | + | chr8.2:42369656-42369675 | MS.gene25516:intron | 45.0% | |
| CCTTCAACACATCACCAACT+CGG | - | chr8.2:42369908-42369927 | None:intergenic | 45.0% | |
| CGATAGATTTGTCCGAGACA+CGG | - | chr8.2:42370241-42370260 | None:intergenic | 45.0% | |
| CGCTGACCAAGTTCAACAAA+AGG | + | chr8.2:42368104-42368123 | MS.gene25516:CDS | 45.0% | |
| CGGCACACAAAGTTGAATTG+CGG | - | chr8.2:42369954-42369973 | None:intergenic | 45.0% | |
| CGTGTCTCGGACAAATCTAT+CGG | + | chr8.2:42370239-42370258 | MS.gene25516:CDS | 45.0% | |
| CTCAACAGCGTTTATCGACA+GGG | + | chr8.2:42370215-42370234 | MS.gene25516:CDS | 45.0% | |
| CTTGGCAGGGGATAATTACT+AGG | + | chr8.2:42369170-42369189 | MS.gene25516:CDS | 45.0% | |
| GACGAACCTAGTGAGAAACT+CGG | - | chr8.2:42368316-42368335 | None:intergenic | 45.0% | |
| GAGCCCACTTTGGACATTTA+GGG | - | chr8.2:42370427-42370446 | None:intergenic | 45.0% | |
| GCAGACACAACAACAATTCC+AGG | + | chr8.2:42370098-42370117 | MS.gene25516:CDS | 45.0% | |
| TCAACAAGGTTGTAGCCTCT+AGG | - | chr8.2:42368039-42368058 | None:intergenic | 45.0% | |
| TTGAACTTGGTCAGCGTTTG+AGG | - | chr8.2:42368100-42368119 | None:intergenic | 45.0% | |
| ! | AGGTGTCACCATTGGAGATA+CGG | - | chr8.2:42368266-42368285 | None:intergenic | 45.0% |
| ! | ATGGGTTTGGAGCAAAGGAT+AGG | - | chr8.2:42368291-42368310 | None:intergenic | 45.0% |
| ! | GAGAAACTCGGAAATGGGTT+TGG | - | chr8.2:42368304-42368323 | None:intergenic | 45.0% |
| ! | GGGCTTGTGTAGTTTGTGTA+AGG | - | chr8.2:42368863-42368882 | None:intergenic | 45.0% |
| ! | TTTGGAGCAAAGGATAGGAG+AGG | - | chr8.2:42368286-42368305 | None:intergenic | 45.0% |
| CAACGTTTGCATTGCGAGAC+AGG | - | chr8.2:42368143-42368162 | None:intergenic | 50.0% | |
| CACCTGGTGGAATTGTAGCT+AGG | + | chr8.2:42368783-42368802 | MS.gene25516:CDS | 50.0% | |
| CAGGTCACTATGTCCTCTAC+TGG | + | chr8.2:42370117-42370136 | MS.gene25516:CDS | 50.0% | |
| CAGTAGAGGACATAGTGACC+TGG | - | chr8.2:42370119-42370138 | None:intergenic | 50.0% | |
| GGACTATACCGTTACCGAGT+TGG | + | chr8.2:42369891-42369910 | MS.gene25516:intron | 50.0% | |
| GGAGCCCACTTTGGACATTT+AGG | - | chr8.2:42370428-42370447 | None:intergenic | 50.0% | |
| GGTGATGTGTTGAAGGTAGC+TGG | + | chr8.2:42369912-42369931 | MS.gene25516:CDS | 50.0% | |
| GGTGCAAACTTCACACACCT+TGG | - | chr8.2:42370359-42370378 | None:intergenic | 50.0% | |
| TCAGAGTGAGTTCCCAGTAG+AGG | - | chr8.2:42370133-42370152 | None:intergenic | 50.0% | |
| TTATGACCAGGAGCCCACTT+TGG | - | chr8.2:42370437-42370456 | None:intergenic | 50.0% | |
| ! | AAATGTCCAAAGTGGGCTCC+TGG | + | chr8.2:42370428-42370447 | MS.gene25516:CDS | 50.0% |
| ! | CGGAAATGGGTTTGGAGCAA+AGG | - | chr8.2:42368296-42368315 | None:intergenic | 50.0% |
| ! | GGAACAAACTGGCTCATCAC+TGG | - | chr8.2:42368707-42368726 | None:intergenic | 50.0% |
| ! | GTGATGAGCCAGTTTGTTCC+TGG | + | chr8.2:42368707-42368726 | MS.gene25516:CDS | 50.0% |
| ! | TCTGAGGCTAAAACACCTGG+TGG | + | chr8.2:42368770-42368789 | MS.gene25516:CDS | 50.0% |
| !! | CCGAGTTGGTGATGTGTTGA+AGG | + | chr8.2:42369905-42369924 | MS.gene25516:CDS | 50.0% |
| !! | GATAGGAGAGGTGTCACCAT+TGG | - | chr8.2:42368274-42368293 | None:intergenic | 50.0% |
| !! | GTTGGTGCTGTATTTGCCTC+TGG | + | chr8.2:42368971-42368990 | MS.gene25516:CDS | 50.0% |
| !! | TTGTGCAGTTCTGGGACATC+TGG | + | chr8.2:42368608-42368627 | MS.gene25516:intron | 50.0% |
| GGCCTAGCTACAATTCCACC+AGG | - | chr8.2:42368788-42368807 | None:intergenic | 55.0% | |
| GGGCTCCTGGTCATAAGCAA+TGG | + | chr8.2:42370441-42370460 | MS.gene25516:CDS | 55.0% | |
| TCGGACACGGTTGCATCGAA+TGG | - | chr8.2:42370065-42370084 | None:intergenic | 55.0% | |
| TTATCGACAGGGCCGTGTCT+CGG | + | chr8.2:42370226-42370245 | MS.gene25516:CDS | 55.0% | |
| TTGTAGCCTCTAGGTGCCTC+AGG | - | chr8.2:42368030-42368049 | None:intergenic | 55.0% | |
| !! | TGCAGTTCTGGGACATCTGG+AGG | + | chr8.2:42368611-42368630 | MS.gene25516:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 42368024 | 42370478 | 42368024 | ID=MS.gene25516 |
| chr8.2 | mRNA | 42368024 | 42370478 | 42368024 | ID=MS.gene25516.t1;Parent=MS.gene25516 |
| chr8.2 | exon | 42368024 | 42368328 | 42368024 | ID=MS.gene25516.t1.exon1;Parent=MS.gene25516.t1 |
| chr8.2 | CDS | 42368024 | 42368328 | 42368024 | ID=cds.MS.gene25516.t1;Parent=MS.gene25516.t1 |
| chr8.2 | exon | 42368616 | 42369544 | 42368616 | ID=MS.gene25516.t1.exon2;Parent=MS.gene25516.t1 |
| chr8.2 | CDS | 42368616 | 42369544 | 42368616 | ID=cds.MS.gene25516.t1;Parent=MS.gene25516.t1 |
| chr8.2 | exon | 42369892 | 42370478 | 42369892 | ID=MS.gene25516.t1.exon3;Parent=MS.gene25516.t1 |
| chr8.2 | CDS | 42369892 | 42370478 | 42369892 | ID=cds.MS.gene25516.t1;Parent=MS.gene25516.t1 |
| Gene Sequence |
| Protein sequence |
