Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073214.t1 | XP_013442717.1 | 97.8 | 602 | 7 | 2 | 1 | 600 | 1 | 598 | 0.00E+00 | 1203.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073214.t1 | Q9ZNS2 | 68.0 | 584 | 179 | 4 | 22 | 598 | 8 | 590 | 2.5e-237 | 822.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073214.t1 | A0A072TH59 | 97.8 | 602 | 7 | 2 | 1 | 600 | 1 | 598 | 0.0e+00 | 1203.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene073214 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene073214 | 0.803913 | 2.78E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene073214 | 0.810054 | 1.39E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene073214 | 0.802152 | 6.42E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene073214 | 0.861361 | 1.08E-63 | -1.69E-46 |
| MS.gene049805 | MS.gene073214 | 0.859483 | 4.01E-63 | -1.69E-46 |
| MS.gene050593 | MS.gene073214 | 0.857223 | 1.89E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene073214 | 0.833055 | 6.64E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene073214 | 0.857235 | 1.87E-62 | -1.69E-46 |
| MS.gene050950 | MS.gene073214 | 0.832053 | 1.18E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene073214 | 0.801834 | 7.47E-49 | -1.69E-46 |
| MS.gene051255 | MS.gene073214 | 0.802762 | 4.81E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene073214 | 0.820134 | 8.05E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene073214 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene051692 | MS.gene073214 | 0.88125 | 2.81E-70 | -1.69E-46 |
| MS.gene051694 | MS.gene073214 | 0.816041 | 6.78E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene073214 | 0.802915 | 4.47E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene073214 | 0.82978 | 4.25E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene073214 | 0.811121 | 8.20E-51 | -1.69E-46 |
| MS.gene052322 | MS.gene073214 | 0.839238 | 1.79E-57 | -1.69E-46 |
| MS.gene052346 | MS.gene073214 | 0.822569 | 2.21E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene073214 | 0.812033 | 5.20E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene073214 | 0.838372 | 2.99E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene073214 | 0.853701 | 2.01E-61 | -1.69E-46 |
| MS.gene052484 | MS.gene073214 | 0.826496 | 2.63E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene073214 | 0.814174 | 1.76E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene073214 | 0.839957 | 1.16E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene073214 | 0.828638 | 8.05E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene073214 | 0.827327 | 1.66E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene073214 | 0.808543 | 2.94E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene073214 | 0.86462 | 1.07E-64 | -1.69E-46 |
| MS.gene052822 | MS.gene073214 | 0.807882 | 4.07E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene073214 | 0.819675 | 1.03E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene073214 | 0.818442 | 1.96E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene073214 | 0.846343 | 2.31E-59 | -1.69E-46 |
| MS.gene053203 | MS.gene073214 | 0.820443 | 6.84E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene073214 | 0.823107 | 1.65E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene073214 | 0.855948 | 4.48E-62 | -1.69E-46 |
| MS.gene053286 | MS.gene073214 | 0.84422 | 8.65E-59 | -1.69E-46 |
| MS.gene053322 | MS.gene073214 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene053406 | MS.gene073214 | -0.800113 | 1.68E-48 | -1.69E-46 |
| MS.gene053436 | MS.gene073214 | 0.838668 | 2.51E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene073214 | 0.848294 | 6.72E-60 | -1.69E-46 |
| MS.gene053574 | MS.gene073214 | 0.851163 | 1.06E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene073214 | 0.810745 | 9.90E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene073214 | 0.818491 | 1.91E-52 | -1.69E-46 |
| MS.gene054408 | MS.gene073214 | 0.831177 | 1.93E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene073214 | 0.800924 | 1.15E-48 | -1.69E-46 |
| MS.gene054642 | MS.gene073214 | 0.808555 | 2.92E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene073214 | -0.815136 | 1.08E-51 | -1.69E-46 |
| MS.gene054927 | MS.gene073214 | 0.815185 | 1.05E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene073214 | 0.833908 | 4.07E-56 | -1.69E-46 |
| MS.gene055206 | MS.gene073214 | 0.828787 | 7.40E-55 | -1.69E-46 |
| MS.gene055224 | MS.gene073214 | 0.802819 | 4.68E-49 | -1.69E-46 |
| MS.gene055289 | MS.gene073214 | 0.849472 | 3.16E-60 | -1.69E-46 |
| MS.gene055362 | MS.gene073214 | 0.815869 | 7.41E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene073214 | 0.802845 | 4.62E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene073214 | 0.860591 | 1.86E-63 | -1.69E-46 |
| MS.gene055909 | MS.gene073214 | 0.818378 | 2.02E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene073214 | 0.819643 | 1.04E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene073214 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene073214 | 0.810308 | 1.23E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene073214 | 0.813945 | 1.98E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene073214 | 0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene073214 | 0.842243 | 2.91E-58 | -1.69E-46 |
| MS.gene056448 | MS.gene073214 | 0.821974 | 3.03E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene073214 | 0.805968 | 1.03E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene073214 | 0.830986 | 2.16E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene073214 | 0.800107 | 1.68E-48 | -1.69E-46 |
| MS.gene056877 | MS.gene073214 | 0.80866 | 2.78E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene073214 | 0.845547 | 3.79E-59 | -1.69E-46 |
| MS.gene057124 | MS.gene073214 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene073214 | 0.808379 | 3.19E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene073214 | 0.850042 | 2.19E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene073214 | 0.855121 | 7.80E-62 | -1.69E-46 |
| MS.gene057823 | MS.gene073214 | 0.801412 | 9.11E-49 | -1.69E-46 |
| MS.gene057856 | MS.gene073214 | 0.845758 | 3.33E-59 | -1.69E-46 |
| MS.gene058006 | MS.gene073214 | 0.835277 | 1.84E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene073214 | 0.803436 | 3.49E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene073214 | 0.826887 | 2.12E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene073214 | 0.819009 | 1.45E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene073214 | 0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene058444 | MS.gene073214 | 0.807096 | 5.97E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene073214 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene073214 | 0.828537 | 8.51E-55 | -1.69E-46 |
| MS.gene05883 | MS.gene073214 | 0.845815 | 3.21E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene073214 | 0.801711 | 7.92E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene073214 | 0.825201 | 5.33E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene073214 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene073214 | 0.801441 | 8.99E-49 | -1.69E-46 |
| MS.gene059305 | MS.gene073214 | 0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene059455 | MS.gene073214 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene073214 | 0.838099 | 3.52E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene073214 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene059801 | MS.gene073214 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene073214 | 0.826419 | 2.74E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene073214 | 0.842306 | 2.80E-58 | -1.69E-46 |
| MS.gene060469 | MS.gene073214 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene073214 | 0.858279 | 9.19E-63 | -1.69E-46 |
| MS.gene060485 | MS.gene073214 | 0.822245 | 2.63E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene073214 | 0.812078 | 5.08E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene073214 | 0.813119 | 3.01E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene073214 | 0.806602 | 7.60E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene073214 | 0.838253 | 3.21E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene073214 | 0.850878 | 1.28E-60 | -1.69E-46 |
| MS.gene06092 | MS.gene073214 | 0.815239 | 1.02E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene073214 | 0.800168 | 1.64E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073214 | MS.gene59582 | PPI |
| MS.gene79749 | MS.gene073214 | PPI |
| MS.gene024458 | MS.gene073214 | PPI |
| MS.gene95295 | MS.gene073214 | PPI |
| MS.gene050633 | MS.gene073214 | PPI |
| MS.gene073214 | MS.gene025922 | PPI |
| MS.gene073214 | MS.gene95297 | PPI |
| MS.gene073214 | MS.gene95299 | PPI |
| MS.gene43375 | MS.gene073214 | PPI |
| MS.gene073214 | MS.gene000373 | PPI |
| MS.gene073214 | MS.gene41352 | PPI |
| MS.gene79751 | MS.gene073214 | PPI |
| MS.gene073214 | MS.gene22809 | PPI |
| MS.gene073214 | MS.gene86023 | PPI |
| MS.gene59583 | MS.gene073214 | PPI |
| MS.gene073214 | MS.gene046366 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073214.t1 | MTR_0102s0060 | 97.841 | 602 | 7 | 2 | 1 | 600 | 1 | 598 | 0.0 | 1217 |
| MS.gene073214.t1 | MTR_7g117110 | 49.223 | 579 | 282 | 5 | 23 | 599 | 11 | 579 | 0.0 | 588 |
| MS.gene073214.t1 | MTR_8g027920 | 46.127 | 581 | 297 | 7 | 21 | 599 | 9 | 575 | 0.0 | 543 |
| MS.gene073214.t1 | MTR_8g027965 | 46.299 | 581 | 296 | 7 | 21 | 599 | 9 | 575 | 0.0 | 541 |
| MS.gene073214.t1 | MTR_8g027955 | 46.472 | 581 | 295 | 7 | 21 | 599 | 16 | 582 | 0.0 | 540 |
| MS.gene073214.t1 | MTR_8g027970 | 43.373 | 581 | 313 | 7 | 21 | 599 | 9 | 575 | 0.0 | 525 |
| MS.gene073214.t1 | MTR_7g117110 | 47.512 | 402 | 201 | 4 | 23 | 424 | 11 | 402 | 1.46e-129 | 387 |
| MS.gene073214.t1 | MTR_4g045903 | 34.950 | 598 | 356 | 9 | 9 | 596 | 23 | 597 | 2.47e-128 | 390 |
| MS.gene073214.t1 | MTR_8g467000 | 34.642 | 586 | 359 | 6 | 23 | 595 | 15 | 589 | 1.80e-125 | 383 |
| MS.gene073214.t1 | MTR_0035s0150 | 34.331 | 568 | 351 | 5 | 26 | 590 | 23 | 571 | 8.66e-123 | 375 |
| MS.gene073214.t1 | MTR_2g081860 | 34.130 | 586 | 359 | 8 | 26 | 595 | 17 | 591 | 1.32e-121 | 373 |
| MS.gene073214.t1 | MTR_1g088765 | 35.450 | 567 | 343 | 10 | 23 | 575 | 11 | 568 | 3.94e-117 | 361 |
| MS.gene073214.t1 | MTR_5g016320 | 33.159 | 573 | 362 | 5 | 26 | 590 | 24 | 583 | 1.57e-116 | 359 |
| MS.gene073214.t1 | MTR_1g088765 | 38.129 | 417 | 240 | 8 | 173 | 575 | 12 | 424 | 1.36e-95 | 300 |
| MS.gene073214.t1 | MTR_8g037720 | 43.827 | 324 | 156 | 3 | 278 | 599 | 136 | 435 | 1.27e-90 | 287 |
| MS.gene073214.t1 | MTR_8g037720 | 37.037 | 135 | 78 | 2 | 23 | 157 | 2 | 129 | 2.01e-17 | 85.5 |
| MS.gene073214.t1 | MTR_7g094190 | 30.952 | 588 | 365 | 16 | 23 | 589 | 5 | 572 | 6.20e-89 | 287 |
| MS.gene073214.t1 | MTR_1g047730 | 48.462 | 260 | 121 | 2 | 342 | 599 | 114 | 362 | 1.89e-81 | 260 |
| MS.gene073214.t1 | MTR_7g094190 | 32.244 | 459 | 282 | 12 | 147 | 589 | 27 | 472 | 1.31e-74 | 246 |
| MS.gene073214.t1 | MTR_7g094330 | 29.965 | 287 | 161 | 9 | 147 | 430 | 27 | 276 | 1.77e-37 | 140 |
| MS.gene073214.t1 | MTR_3g023280 | 40.860 | 93 | 46 | 5 | 491 | 575 | 8 | 99 | 4.12e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073214.t1 | AT4G03400 | 67.979 | 584 | 179 | 4 | 22 | 598 | 8 | 590 | 0.0 | 836 |
| MS.gene073214.t1 | AT4G03400 | 67.979 | 584 | 179 | 4 | 22 | 598 | 8 | 590 | 0.0 | 836 |
| MS.gene073214.t1 | AT2G46370 | 46.875 | 576 | 291 | 5 | 25 | 598 | 24 | 586 | 0.0 | 570 |
| MS.gene073214.t1 | AT2G46370 | 46.875 | 576 | 291 | 5 | 25 | 598 | 13 | 575 | 0.0 | 570 |
| MS.gene073214.t1 | AT2G46370 | 46.875 | 576 | 291 | 5 | 25 | 598 | 13 | 575 | 0.0 | 570 |
| MS.gene073214.t1 | AT2G46370 | 49.004 | 502 | 246 | 3 | 99 | 598 | 3 | 496 | 0.0 | 532 |
| MS.gene073214.t1 | AT4G37390 | 34.669 | 574 | 355 | 7 | 26 | 590 | 24 | 586 | 1.27e-128 | 391 |
| MS.gene073214.t1 | AT1G28130 | 35.067 | 596 | 354 | 8 | 23 | 595 | 11 | 596 | 2.49e-127 | 387 |
| MS.gene073214.t1 | AT1G59500 | 35.602 | 573 | 345 | 8 | 26 | 590 | 24 | 580 | 1.39e-123 | 377 |
| MS.gene073214.t1 | AT4G27260 | 34.305 | 583 | 359 | 6 | 26 | 595 | 25 | 596 | 2.14e-122 | 375 |
| MS.gene073214.t1 | AT5G54510 | 33.959 | 586 | 363 | 6 | 23 | 595 | 22 | 596 | 1.03e-121 | 373 |
| MS.gene073214.t1 | AT2G23170 | 34.091 | 572 | 354 | 9 | 26 | 590 | 23 | 578 | 1.16e-120 | 370 |
| MS.gene073214.t1 | AT2G14960 | 32.867 | 572 | 355 | 7 | 26 | 590 | 23 | 572 | 9.47e-116 | 357 |
| MS.gene073214.t1 | AT1G23160 | 33.962 | 583 | 348 | 9 | 29 | 596 | 18 | 578 | 6.04e-113 | 349 |
| MS.gene073214.t1 | AT5G13350 | 33.562 | 584 | 357 | 11 | 26 | 595 | 14 | 580 | 7.81e-113 | 349 |
| MS.gene073214.t1 | AT5G13350 | 33.562 | 584 | 357 | 11 | 26 | 595 | 14 | 580 | 7.81e-113 | 349 |
| MS.gene073214.t1 | AT5G13320 | 33.966 | 580 | 350 | 9 | 29 | 595 | 15 | 574 | 1.14e-112 | 348 |
| MS.gene073214.t1 | AT5G13320 | 33.966 | 580 | 350 | 9 | 29 | 595 | 15 | 574 | 1.14e-112 | 348 |
| MS.gene073214.t1 | AT5G13320 | 33.966 | 580 | 350 | 9 | 29 | 595 | 30 | 589 | 2.40e-112 | 348 |
| MS.gene073214.t1 | AT5G13360 | 34.075 | 584 | 353 | 10 | 26 | 595 | 14 | 579 | 4.02e-111 | 345 |
| MS.gene073214.t1 | AT5G13360 | 34.075 | 584 | 353 | 10 | 26 | 595 | 14 | 579 | 4.02e-111 | 345 |
| MS.gene073214.t1 | AT1G48660 | 32.062 | 577 | 364 | 7 | 29 | 595 | 10 | 568 | 4.69e-111 | 344 |
| MS.gene073214.t1 | AT2G47750 | 33.106 | 586 | 366 | 11 | 21 | 595 | 7 | 577 | 5.33e-111 | 345 |
| MS.gene073214.t1 | AT1G48660 | 32.174 | 575 | 363 | 7 | 29 | 595 | 10 | 565 | 1.51e-110 | 343 |
| MS.gene073214.t1 | AT5G13360 | 34.075 | 584 | 353 | 10 | 26 | 595 | 92 | 657 | 3.41e-110 | 345 |
| MS.gene073214.t1 | AT5G13370 | 34.014 | 588 | 349 | 13 | 26 | 595 | 14 | 580 | 2.51e-109 | 340 |
| MS.gene073214.t1 | AT5G51470 | 33.039 | 566 | 352 | 5 | 29 | 586 | 16 | 562 | 8.56e-104 | 326 |
| MS.gene073214.t1 | AT5G13380 | 32.483 | 588 | 357 | 11 | 26 | 595 | 44 | 609 | 1.39e-102 | 324 |
| MS.gene073214.t1 | AT1G28130 | 37.360 | 447 | 253 | 7 | 172 | 595 | 11 | 453 | 1.79e-101 | 316 |
| MS.gene073214.t1 | AT1G48670 | 35.971 | 417 | 245 | 7 | 189 | 595 | 2 | 406 | 2.53e-91 | 288 |
| MS.gene073214.t1 | AT1G48670 | 30.277 | 578 | 321 | 13 | 29 | 595 | 11 | 517 | 2.09e-90 | 289 |
| MS.gene073214.t1 | AT5G51470 | 33.682 | 478 | 298 | 4 | 117 | 586 | 6 | 472 | 1.32e-86 | 278 |
| MS.gene073214.t1 | AT1G48690 | 29.688 | 192 | 124 | 2 | 29 | 220 | 10 | 190 | 5.26e-18 | 82.8 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTCCTCCTTCCCTTAT+TGG | 0.088269 | 4.3:-54613945 | None:intergenic |
| CTGCATATAAAGTTCAATTT+TGG | 0.088571 | 4.3:-54617827 | None:intergenic |
| AAAATTGAGAGAGGCTATTT+TGG | 0.167851 | 4.3:+54614307 | MS.gene073214:CDS |
| AAAATAGCCTCTCTCAATTT+TGG | 0.172918 | 4.3:-54614305 | None:intergenic |
| AGGGACTTTCAAGAAGATTT+TGG | 0.198041 | 4.3:+54618153 | MS.gene073214:CDS |
| GCCACTTGAACTTTGCATTT+TGG | 0.203128 | 4.3:+54618126 | MS.gene073214:CDS |
| TTTGCAGAGTTTATCCAATA+AGG | 0.224019 | 4.3:+54613931 | MS.gene073214:intron |
| AATAAGTCCAAACACAAATT+TGG | 0.225655 | 4.3:+54614334 | MS.gene073214:CDS |
| TTAACATTTGGCCAAATCTT+TGG | 0.226975 | 4.3:-54614416 | None:intergenic |
| GTTATTTACTGGGAGATTAA+AGG | 0.230982 | 4.3:+54618004 | MS.gene073214:CDS |
| GACAATATGTGGATTGTTTA+TGG | 0.232670 | 4.3:-54614127 | None:intergenic |
| TTGACACTTATACCATAAAA+AGG | 0.248016 | 4.3:+54618257 | MS.gene073214:CDS |
| ACATATTGTCACCTCCTTCT+TGG | 0.270579 | 4.3:+54614140 | MS.gene073214:CDS |
| TGCACCTAGGAGTCTTAAAT+TGG | 0.272433 | 4.3:-54618207 | None:intergenic |
| CTGGTCACTACGTTATTTAC+TGG | 0.272776 | 4.3:+54617993 | MS.gene073214:CDS |
| TTGGTTTGATTCCAAAGATT+TGG | 0.301493 | 4.3:+54614405 | MS.gene073214:CDS |
| GCTAGTAAAATCAACAATTT+CGG | 0.308582 | 4.3:-54617948 | None:intergenic |
| CCTTTGATTAGTGCTGATTA+TGG | 0.311269 | 4.3:+54614512 | MS.gene073214:CDS |
| ACAGCAAATGTAACTTCTTC+TGG | 0.332953 | 4.3:-54614581 | None:intergenic |
| TTTGAAGCCAAATTTGTGTT+TGG | 0.346442 | 4.3:-54614341 | None:intergenic |
| TTGGATAATTTCATAGCAAA+TGG | 0.352160 | 4.3:+54618172 | MS.gene073214:CDS |
| GCATATAAGTACTTAACATT+TGG | 0.354805 | 4.3:-54614428 | None:intergenic |
| ATAATCTTGGACAATGGAAT+TGG | 0.356851 | 4.3:-54614686 | None:intergenic |
| CTTAAGGAAAGAGTGGTTAT+AGG | 0.357105 | 4.3:-54611400 | None:intergenic |
| GAATATCTCAAGAAATGGTT+AGG | 0.367643 | 4.3:+54611235 | MS.gene073214:CDS |
| AAACTTAGACATTATGCAAA+TGG | 0.367702 | 4.3:+54614485 | MS.gene073214:CDS |
| CTATAACCACTCTTTCCTTA+AGG | 0.386150 | 4.3:+54611401 | MS.gene073214:CDS |
| CTAGAGAAAGTTGATTGGTT+TGG | 0.388971 | 4.3:+54614386 | MS.gene073214:CDS |
| TTGCAGAGTTTATCCAATAA+GGG | 0.407774 | 4.3:+54613932 | MS.gene073214:intron |
| TTAAACTTACAGGGTTATAC+AGG | 0.407977 | 4.3:+54617756 | MS.gene073214:intron |
| ACTTCTTCTGGTGGTAAACT+AGG | 0.414449 | 4.3:-54614569 | None:intergenic |
| CTGAGAAGTGTTGGTTCCAT+TGG | 0.419789 | 4.3:-54611070 | None:intergenic |
| CCATTGTCCAAGATTATAGT+AGG | 0.419799 | 4.3:+54614692 | MS.gene073214:CDS |
| TGGATAATTTCATAGCAAAT+GGG | 0.420226 | 4.3:+54618173 | MS.gene073214:CDS |
| AAATCAGCATGTGAAGCAAT+AGG | 0.420636 | 4.3:-54611319 | None:intergenic |
| TGATGATTGTTGCAGAGAAA+TGG | 0.425098 | 4.3:+54618048 | MS.gene073214:CDS |
| TAGGAACCAATGAAGTGAAA+AGG | 0.433467 | 4.3:-54611300 | None:intergenic |
| CTGTTGTCCTACTATAATCT+TGG | 0.439515 | 4.3:-54614699 | None:intergenic |
| AGTATGAAAACATTATTAGT+TGG | 0.446576 | 4.3:+54611134 | MS.gene073214:CDS |
| GGATTACAATATATTCGAAA+TGG | 0.448428 | 4.3:+54611258 | MS.gene073214:CDS |
| GTGTGGAATATCTCAAGAAA+TGG | 0.451140 | 4.3:+54611230 | MS.gene073214:CDS |
| AACTTAGACATTATGCAAAT+GGG | 0.457425 | 4.3:+54614486 | MS.gene073214:CDS |
| AGGGTTCTTGAATTCATATA+CGG | 0.463184 | 4.3:+54613963 | MS.gene073214:CDS |
| AGCAACTGTTTCAAAACAAA+AGG | 0.464090 | 4.3:+54613987 | MS.gene073214:CDS |
| TACTTATATGCAATAATGAC+AGG | 0.466249 | 4.3:+54614440 | MS.gene073214:CDS |
| AGGAGCTAGAGAAAGTTGAT+TGG | 0.466252 | 4.3:+54614381 | MS.gene073214:CDS |
| TTGAGCACTATGTCGGGTAA+AGG | 0.468379 | 4.3:-54612052 | None:intergenic |
| CTCTCTCTACCACTAGTTGA+AGG | 0.468806 | 4.3:-54617898 | None:intergenic |
| TTCTCTCCAATGTTCTTCAA+AGG | 0.473269 | 4.3:-54614234 | None:intergenic |
| ATAGGTTGTTGAGTGAGTAA+AGG | 0.478480 | 4.3:-54611382 | None:intergenic |
| AGGAACCAATGAAGTGAAAA+GGG | 0.480698 | 4.3:-54611299 | None:intergenic |
| TGAACCAATTTAAGACTCCT+AGG | 0.482138 | 4.3:+54618203 | MS.gene073214:CDS |
| TCGGAAATTCTCTGAATGAA+TGG | 0.484621 | 4.3:-54611346 | None:intergenic |
| GGAGATGTGGTAGAAGTGTC+AGG | 0.498436 | 4.3:+54617788 | MS.gene073214:CDS |
| CAGAGTAGAAGAGGCCAAGA+AGG | 0.500086 | 4.3:-54614154 | None:intergenic |
| CACTGAAAATCACTTCTTGA+GGG | 0.500720 | 4.3:-54614100 | None:intergenic |
| AAGAAGGAGGTGACAATATG+TGG | 0.502219 | 4.3:-54614138 | None:intergenic |
| AATTTGGCTTCAAAATTACA+AGG | 0.505896 | 4.3:+54614350 | MS.gene073214:CDS |
| AATATCTCAAGAAATGGTTA+GGG | 0.508183 | 4.3:+54611236 | MS.gene073214:CDS |
| GAACTCAAAGTAAGAGAATG+TGG | 0.508691 | 4.3:-54614609 | None:intergenic |
| ATCCAATAAGGGAAGGAGGA+AGG | 0.508750 | 4.3:+54613943 | MS.gene073214:CDS |
| ATTATGGTTCAACTGAGAGC+TGG | 0.510234 | 4.3:+54614528 | MS.gene073214:CDS |
| TCCAATAAGGGAAGGAGGAA+GGG | 0.513464 | 4.3:+54613944 | MS.gene073214:CDS |
| AAGTGTCAGGATTTCACAAT+GGG | 0.514165 | 4.3:+54617801 | MS.gene073214:CDS |
| GGGTTATACAGGTGCAGACT+AGG | 0.516374 | 4.3:+54617767 | MS.gene073214:intron |
| GGTTCAACTGAGAGCTGGAT+TGG | 0.516866 | 4.3:+54614533 | MS.gene073214:CDS |
| CGAAATGGAACCATGTGCAT+TGG | 0.518373 | 4.3:+54611273 | MS.gene073214:CDS |
| TGCAGTTCTGGAACCACAGA+GGG | 0.523265 | 4.3:+54612012 | MS.gene073214:intron |
| TGAGCACTATGTCGGGTAAA+GGG | 0.525938 | 4.3:-54612051 | None:intergenic |
| ATCATCAATAGCAATGGTTG+TGG | 0.528537 | 4.3:+54611103 | MS.gene073214:CDS |
| CGTGGTTTGAGCACTATGTC+GGG | 0.529475 | 4.3:-54612058 | None:intergenic |
| TCTTGTTTATTTCTATGAAG+AGG | 0.529588 | 4.3:-54614635 | None:intergenic |
| ATCCATGATCAGCAAAAGAT+AGG | 0.531768 | 4.3:-54618072 | None:intergenic |
| TATCAGCAGCATATAGATCA+AGG | 0.536272 | 4.3:+54612097 | MS.gene073214:CDS |
| TCACCACCTTTGAAGAACAT+TGG | 0.538044 | 4.3:+54614228 | MS.gene073214:CDS |
| TCTCCAATGTTCTTCAAAGG+TGG | 0.539352 | 4.3:-54614231 | None:intergenic |
| TCCAAAATGCAAAGTTCAAG+TGG | 0.541118 | 4.3:-54618127 | None:intergenic |
| CTACTTGATCAGAGTAGAAG+AGG | 0.541894 | 4.3:-54614163 | None:intergenic |
| GCGTGGTTTGAGCACTATGT+CGG | 0.549957 | 4.3:-54612059 | None:intergenic |
| GTTGGTTCGAAGATGTGTCT+AGG | 0.559280 | 4.3:+54611152 | MS.gene073214:CDS |
| TGGTCACTACGTTATTTACT+GGG | 0.562828 | 4.3:+54617994 | MS.gene073214:CDS |
| CCTACTATAATCTTGGACAA+TGG | 0.566836 | 4.3:-54614692 | None:intergenic |
| AACAAAAGGAAATTTAACAG+TGG | 0.573015 | 4.3:+54614001 | MS.gene073214:CDS |
| TTGTTGTAGCTGAGAAGTGT+TGG | 0.576787 | 4.3:-54611079 | None:intergenic |
| ACAAAAGGAAATTTAACAGT+GGG | 0.579232 | 4.3:+54614002 | MS.gene073214:CDS |
| CCACTGAAAATCACTTCTTG+AGG | 0.583439 | 4.3:-54614101 | None:intergenic |
| GTTTATCCAATAAGGGAAGG+AGG | 0.586787 | 4.3:+54613939 | MS.gene073214:CDS |
| TTACTGGGAGATTAAAGGAG+AGG | 0.590174 | 4.3:+54618009 | MS.gene073214:CDS |
| AACAACATCATCAATAGCAA+TGG | 0.591377 | 4.3:+54611097 | MS.gene073214:CDS |
| CCATAATCAGCACTAATCAA+AGG | 0.602203 | 4.3:-54614512 | None:intergenic |
| CAGTAAATAACGTAGTGACC+AGG | 0.605471 | 4.3:-54617992 | None:intergenic |
| AGGTGACCTTAAGGAAAGAG+TGG | 0.609816 | 4.3:-54611407 | None:intergenic |
| GGATAATTTCATAGCAAATG+GGG | 0.610908 | 4.3:+54618174 | MS.gene073214:CDS |
| AGAGTTTATCCAATAAGGGA+AGG | 0.613843 | 4.3:+54613936 | MS.gene073214:intron |
| TAAAGTGAATATTTGAAGCG+TGG | 0.617745 | 4.3:-54612076 | None:intergenic |
| ATTTGTAATGACATTAGACA+TGG | 0.619879 | 4.3:+54614257 | MS.gene073214:CDS |
| TCTGAAACAAAACCATGGTG+TGG | 0.619947 | 4.3:+54611213 | MS.gene073214:CDS |
| AGTAGAAGAGGCCAAGAAGG+AGG | 0.620885 | 4.3:-54614151 | None:intergenic |
| TTCATTCAGAGAATTTCCGA+TGG | 0.622534 | 4.3:+54611349 | MS.gene073214:CDS |
| CAGGTGCAGACTAGGAGATG+TGG | 0.622806 | 4.3:+54617775 | MS.gene073214:CDS |
| AACTCAAAGTAAGAGAATGT+GGG | 0.623136 | 4.3:-54614608 | None:intergenic |
| GAATTTCTGCCTCCCCTCTG+TGG | 0.624902 | 4.3:-54612025 | None:intergenic |
| TAAAGGAGCAGTGTCACCAT+CGG | 0.631135 | 4.3:-54611365 | None:intergenic |
| GCAGATGTAACTAATGAACC+TGG | 0.631349 | 4.3:+54617974 | MS.gene073214:CDS |
| AAAATTACAAGGCTATTGTG+AGG | 0.634297 | 4.3:+54614361 | MS.gene073214:CDS |
| TCTTGAGATATTCCACACCA+TGG | 0.638732 | 4.3:-54611225 | None:intergenic |
| TAAGTCACCAAAATTGAGAG+AGG | 0.640371 | 4.3:+54614298 | MS.gene073214:CDS |
| GAAGTGTCAGGATTTCACAA+TGG | 0.640985 | 4.3:+54617800 | MS.gene073214:CDS |
| GCAAATGTAACTTCTTCTGG+TGG | 0.646970 | 4.3:-54614578 | None:intergenic |
| AGAGAAGGACCTTCAACTAG+TGG | 0.647323 | 4.3:+54617889 | MS.gene073214:CDS |
| GTTCTGGAACCACAGAGGGG+AGG | 0.654673 | 4.3:+54612016 | MS.gene073214:intron |
| GAAGATGTGTCTAGGAACAC+AGG | 0.656944 | 4.3:+54611160 | MS.gene073214:CDS |
| AAAAGGGATTCCAATGCACA+TGG | 0.659062 | 4.3:-54611283 | None:intergenic |
| CTTCAACTAGTGGTAGAGAG+AGG | 0.670697 | 4.3:+54617899 | MS.gene073214:CDS |
| TAATACCTGTAAAAGTTGTG+AGG | 0.672649 | 4.3:-54614733 | None:intergenic |
| AATATTCTGAAACAAAACCA+TGG | 0.689332 | 4.3:+54611208 | MS.gene073214:CDS |
| ACATGATTGTTAGTGCACCT+AGG | 0.701373 | 4.3:-54618220 | None:intergenic |
| TTGCAGTTCTGGAACCACAG+AGG | 0.703020 | 4.3:+54612011 | MS.gene073214:intron |
| CATGCTATAGACAAAAGCTG+AGG | 0.707584 | 4.3:-54614195 | None:intergenic |
| ATATCTCAAGAAATGGTTAG+GGG | 0.711051 | 4.3:+54611237 | MS.gene073214:CDS |
| ACTTATATGCAATAATGACA+GGG | 0.716264 | 4.3:+54614441 | MS.gene073214:CDS |
| GCAGTTCTGGAACCACAGAG+GGG | 0.716358 | 4.3:+54612013 | MS.gene073214:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 54611073 | 54618318 | 54611073 | ID=MS.gene073214 |
| chr4.3 | mRNA | 54611073 | 54618318 | 54611073 | ID=MS.gene073214.t1;Parent=MS.gene073214 |
| chr4.3 | exon | 54611073 | 54611422 | 54611073 | ID=MS.gene073214.t1.exon1;Parent=MS.gene073214.t1 |
| chr4.3 | CDS | 54611073 | 54611422 | 54611073 | ID=cds.MS.gene073214.t1;Parent=MS.gene073214.t1 |
| chr4.3 | exon | 54612017 | 54612118 | 54612017 | ID=MS.gene073214.t1.exon2;Parent=MS.gene073214.t1 |
| chr4.3 | CDS | 54612017 | 54612118 | 54612017 | ID=cds.MS.gene073214.t1;Parent=MS.gene073214.t1 |
| chr4.3 | exon | 54613938 | 54614749 | 54613938 | ID=MS.gene073214.t1.exon3;Parent=MS.gene073214.t1 |
| chr4.3 | CDS | 54613938 | 54614749 | 54613938 | ID=cds.MS.gene073214.t1;Parent=MS.gene073214.t1 |
| chr4.3 | exon | 54617768 | 54618318 | 54617768 | ID=MS.gene073214.t1.exon4;Parent=MS.gene073214.t1 |
| chr4.3 | CDS | 54617768 | 54618318 | 54617768 | ID=cds.MS.gene073214.t1;Parent=MS.gene073214.t1 |
| Gene Sequence |
| Protein sequence |
