AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053964

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053964.t1 MTR_0035s0150 98.469 588 9 0 1 588 1 588 0.0 1208
MS.gene053964.t1 MTR_5g016320 77.409 602 120 4 1 588 1 600 0.0 957
MS.gene053964.t1 MTR_8g467000 64.141 594 195 2 9 584 4 597 0.0 810
MS.gene053964.t1 MTR_4g045903 62.607 583 198 5 17 584 27 604 0.0 762
MS.gene053964.t1 MTR_2g081860 61.224 588 207 3 18 584 12 599 0.0 760
MS.gene053964.t1 MTR_1g088765 52.951 593 248 7 18 584 9 596 0.0 623
MS.gene053964.t1 MTR_1g088765 53.319 452 192 5 152 584 1 452 3.80e-167 483
MS.gene053964.t1 MTR_7g117110 39.367 569 327 8 21 576 12 575 1.99e-137 412
MS.gene053964.t1 MTR_8g027970 38.761 565 332 7 21 576 12 571 5.68e-136 408
MS.gene053964.t1 MTR_8g027920 37.925 559 333 8 27 576 18 571 2.41e-135 406
MS.gene053964.t1 MTR_8g027965 37.943 564 338 6 21 576 12 571 4.37e-135 406
MS.gene053964.t1 MTR_8g027955 37.876 565 337 8 21 576 19 578 4.15e-134 404
MS.gene053964.t1 MTR_0102s0060 33.158 570 357 4 23 571 22 588 5.65e-121 370
MS.gene053964.t1 MTR_7g094190 31.414 573 362 12 19 567 4 569 5.95e-86 278
MS.gene053964.t1 MTR_7g117110 37.179 390 234 4 21 400 12 400 2.75e-81 261
MS.gene053964.t1 MTR_7g094190 31.910 445 278 9 141 567 32 469 4.13e-68 229
MS.gene053964.t1 MTR_8g037720 36.335 322 166 7 268 576 136 431 2.14e-62 212
MS.gene053964.t1 MTR_8g037720 41.414 99 55 1 24 119 3 101 2.60e-16 82.0
MS.gene053964.t1 MTR_1g047730 42.205 263 125 6 326 576 111 358 4.83e-62 209
MS.gene053964.t1 MTR_7g094330 30.576 278 150 7 141 408 32 276 4.50e-32 125
MS.gene053964.t1 MTR_3g023280 51.376 109 50 1 479 584 19 127 9.63e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053964.t1 AT2G14960 82.403 591 99 3 1 588 1 589 0.0 1014
MS.gene053964.t1 AT4G37390 76.783 603 125 4 1 588 1 603 0.0 955
MS.gene053964.t1 AT2G23170 77.983 595 124 4 1 588 1 595 0.0 952
MS.gene053964.t1 AT1G59500 72.864 597 149 5 1 586 1 595 0.0 900
MS.gene053964.t1 AT5G54510 66.553 586 178 3 17 584 19 604 0.0 821
MS.gene053964.t1 AT4G27260 65.812 585 182 3 18 584 20 604 0.0 811
MS.gene053964.t1 AT1G28130 56.155 593 229 8 22 584 13 604 0.0 685
MS.gene053964.t1 AT2G47750 50.940 585 264 8 17 584 7 585 0.0 596
MS.gene053964.t1 AT1G23160 50.000 570 274 5 17 576 9 577 0.0 590
MS.gene053964.t1 AT5G13320 46.988 581 297 4 6 576 10 589 0.0 571
MS.gene053964.t1 AT5G13320 47.295 573 291 4 14 576 3 574 0.0 569
MS.gene053964.t1 AT5G13320 47.295 573 291 4 14 576 3 574 0.0 569
MS.gene053964.t1 AT5G13370 48.090 576 282 7 22 582 13 586 0.0 557
MS.gene053964.t1 AT5G13360 48.547 585 272 9 19 582 87 663 0.0 543
MS.gene053964.t1 AT5G13360 48.547 585 272 9 19 582 9 585 0.0 542
MS.gene053964.t1 AT5G13360 48.547 585 272 9 19 582 9 585 0.0 542
MS.gene053964.t1 AT5G13380 46.864 574 289 5 23 582 44 615 0.0 538
MS.gene053964.t1 AT1G28130 56.182 461 174 6 152 584 1 461 0.0 531
MS.gene053964.t1 AT5G13350 46.552 580 292 8 19 582 9 586 0.0 528
MS.gene053964.t1 AT5G13350 46.552 580 292 8 19 582 9 586 0.0 528
MS.gene053964.t1 AT1G48660 44.621 567 304 5 23 580 7 572 6.61e-180 521
MS.gene053964.t1 AT1G48660 45.053 566 300 6 23 580 7 569 6.89e-180 520
MS.gene053964.t1 AT5G51470 44.803 558 301 4 26 577 16 572 1.79e-172 502
MS.gene053964.t1 AT1G48670 41.918 563 267 6 26 580 11 521 9.45e-153 449
MS.gene053964.t1 AT5G51470 44.050 479 262 3 104 576 3 481 7.12e-142 420
MS.gene053964.t1 AT2G46370 39.254 563 323 9 26 576 17 572 9.77e-139 415
MS.gene053964.t1 AT2G46370 39.254 563 323 9 26 576 17 572 9.77e-139 415
MS.gene053964.t1 AT2G46370 39.254 563 323 9 26 576 28 583 1.05e-138 416
MS.gene053964.t1 AT1G48670 47.677 409 207 3 179 580 2 410 1.65e-137 406
MS.gene053964.t1 AT4G03400 34.669 574 343 6 25 571 14 582 4.87e-123 375
MS.gene053964.t1 AT4G03400 34.669 574 343 6 25 571 14 582 4.87e-123 375
MS.gene053964.t1 AT2G46370 38.600 500 290 7 87 576 1 493 1.45e-121 369
MS.gene053964.t1 AT1G48690 40.415 193 107 3 22 210 2 190 8.41e-41 147

Find 159 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGAAATTGGCATCATTTA+TGG 0.099376 5.2:-43040608 MS.gene053964:CDS
CGTTAAGTTTGAAGCGTTTA+AGG 0.105133 5.2:+43042237 None:intergenic
TTAAATCACCTTATCCTTTC+AGG 0.112309 5.2:+43039689 None:intergenic
AATCGTTGAATTCTGTTTAT+AGG 0.179457 5.2:-43039925 MS.gene053964:CDS
TACAATGACATCTAAATATT+TGG 0.200273 5.2:+43040528 None:intergenic
ACCATAAATGATGCCAATTT+CGG 0.222994 5.2:+43040607 None:intergenic
AAGAATGCTCAAATGAAAAT+TGG 0.234619 5.2:-43040582 MS.gene053964:CDS
TACTCCTATAATGGAGCTTT+TGG 0.260700 5.2:-43039762 MS.gene053964:CDS
TATCAAACCCGACCCGAAAT+TGG 0.272388 5.2:-43040620 MS.gene053964:CDS
AAGGACACCAGGTGGTTTAT+TGG 0.276363 5.2:-43040956 MS.gene053964:CDS
AAAACTGATGCCAACAATTA+AGG 0.280114 5.2:-43041770 MS.gene053964:CDS
GAGTCCAAAAGCTCCATTAT+AGG 0.283190 5.2:+43039758 None:intergenic
CCATAAATGATGCCAATTTC+GGG 0.284070 5.2:+43040608 None:intergenic
GAATTCCTACCTCACGAATC+AGG 0.303669 5.2:-43040337 MS.gene053964:CDS
CATTCTTTCGACGCACAAAA+TGG 0.304672 5.2:+43040173 None:intergenic
TATTTAGATGTCATTGTAAC+TGG 0.310356 5.2:-43040523 MS.gene053964:CDS
ACATCTAAATATTTGGTGTT+AGG 0.335608 5.2:+43040535 None:intergenic
CTGGTCTTCTCCGTGCAATT+AGG 0.337068 5.2:-43040744 MS.gene053964:CDS
CAGGTCATTATGTGATATAT+TGG 0.340991 5.2:-43040015 MS.gene053964:CDS
TTGTAGTAACTTGTGAGAAC+TGG 0.342828 5.2:+43040928 None:intergenic
TTAGGTTCCTTCAGCTCAAT+TGG 0.345131 5.2:-43040726 MS.gene053964:CDS
CTTAAACGCTTCAAACTTAA+CGG 0.349894 5.2:-43042236 MS.gene053964:CDS
GCATTTGAGTATACATGCTT+TGG 0.355525 5.2:+43040821 None:intergenic
CAGCGCCGAGGCGGAGGACT+TGG 0.357333 5.2:+43040776 None:intergenic
ATGGGATGAGCAGAGAGAAT+TGG 0.357351 5.2:+43042116 None:intergenic
TCCAACTCTTCCTTAATTGT+TGG 0.367620 5.2:+43041760 None:intergenic
TCAACAATTTCGTCACCATT+AGG 0.369734 5.2:-43042383 MS.gene053964:CDS
TTGAATGTCGTGGGCTAGTT+CGG 0.379478 5.2:+43040702 None:intergenic
CAATTGGACCATTGGAGATA+AGG 0.379586 5.2:-43039880 MS.gene053964:CDS
AAGGAATAATCACAAGGATT+TGG 0.385048 5.2:-43040558 MS.gene053964:CDS
GGGCAGAGAATGGCTTCATT+TGG 0.385806 5.2:+43040853 None:intergenic
AATTGGACCATTGGAGATAA+GGG 0.390905 5.2:-43039879 MS.gene053964:CDS
AATTCAAAGTAGGCCATGTT+TGG 0.394151 5.2:+43040355 None:intergenic
GAATAGGTGTTGTTTGGAAA+TGG 0.409700 5.2:-43039951 MS.gene053964:CDS
TGCAGTTCTGGTACTTCAGC+TGG 0.420220 5.2:-43041799 MS.gene053964:intron
GGTGTTGAATAGGTGTTGTT+TGG 0.422522 5.2:-43039957 MS.gene053964:CDS
GAAACTTACAGGTTCATAAC+TGG 0.424623 5.2:+43041706 None:intergenic
AGAATGCTCAAATGAAAATT+GGG 0.430991 5.2:-43040581 MS.gene053964:CDS
ATGGTTTGCACATTGGATTA+AGG 0.431625 5.2:+43040401 None:intergenic
TAAATCACCTTATCCTTTCA+GGG 0.435307 5.2:+43039690 None:intergenic
CGAGTCATGAGGTGTTGAAT+AGG 0.435910 5.2:-43039967 MS.gene053964:CDS
ATTCTGTTTATAGGCAATGT+AGG 0.437291 5.2:-43039916 MS.gene053964:CDS
AGGGTTGCGGATCATTCAAT+TGG 0.439629 5.2:-43039896 MS.gene053964:CDS
CAAAGACAGCGCCGAGGCGG+AGG 0.445835 5.2:+43040770 None:intergenic
CTCGGCGCTGTCTTTGCCTC+TGG 0.447709 5.2:-43040763 MS.gene053964:CDS
AATGATGCCAATTTCGGGTC+GGG 0.448903 5.2:+43040613 None:intergenic
TACATGCTTTGGAATGAGTC+GGG 0.450583 5.2:+43040832 None:intergenic
TCACACGCAGGTGGACCTAA+TGG 0.456335 5.2:+43042368 None:intergenic
CACTCTTTCTTGAACGGCAT+CGG 0.459349 5.2:+43042298 None:intergenic
GGACTTGTGTAGACATTGTA+CGG 0.459915 5.2:+43040874 None:intergenic
TTGGCGATACGCTGAATCTC+TGG 0.464115 5.2:+43042152 None:intergenic
AGGTCATTATGTGATATATT+GGG 0.464196 5.2:-43040014 MS.gene053964:CDS
GGGTCCAATGTGGCAAATCT+TGG 0.475897 5.2:+43039711 None:intergenic
TTCCAACCTCCACCTCAGTA+AGG 0.479383 5.2:+43040296 None:intergenic
ATTGTACGGGTCAAAGGGTC+GGG 0.481788 5.2:+43040888 None:intergenic
GGTGACATTCTCCGTGTCAC+CGG 0.482004 5.2:-43040220 MS.gene053964:CDS
TTTGAATGTTTCACGGTCGA+TGG 0.483063 5.2:+43042211 None:intergenic
GAATGAGTCGGGGCAGAGAA+TGG 0.483203 5.2:+43040843 None:intergenic
GTGACATTCTCCGTGTCACC+GGG 0.486229 5.2:-43040219 MS.gene053964:CDS
TAGGTTCCTTCAGCTCAATT+GGG 0.487597 5.2:-43040725 MS.gene053964:CDS
CTATTCAACACCTCATGACT+CGG 0.489683 5.2:+43039968 None:intergenic
ACCTCAGATGGTTTGCACAT+TGG 0.491763 5.2:+43040394 None:intergenic
GCCAACAATTAAGGAAGAGT+TGG 0.492449 5.2:-43041761 MS.gene053964:CDS
CACTTAATTACTACAGTGGT+GGG 0.494137 5.2:-43040477 MS.gene053964:CDS
TTCTGTTTATAGGCAATGTA+GGG 0.495131 5.2:-43039915 MS.gene053964:CDS
TTCGATGAATCGAAGTGCCT+TGG 0.498023 5.2:+43042337 None:intergenic
AGGTCCCGGTTTGAATGTCG+TGG 0.500373 5.2:+43040692 None:intergenic
GTAGACATTGTACGGGTCAA+AGG 0.501669 5.2:+43040882 None:intergenic
GGATCATTCAATTGGACCAT+TGG 0.509299 5.2:-43039888 MS.gene053964:CDS
CTAGCCCACGACATTCAAAC+CGG 0.513627 5.2:-43040697 MS.gene053964:CDS
GAGATAAGGGTTGTGAAGAG+TGG 0.515628 5.2:-43039866 MS.gene053964:CDS
AGGCAAAGACAGCGCCGAGG+CGG 0.517086 5.2:+43040767 None:intergenic
AACTCTGTAACGGTTCAATC+CGG 0.517270 5.2:+43040243 None:intergenic
ATTGGACCCCTGAAAGGATA+AGG 0.517985 5.2:-43039697 MS.gene053964:CDS
CCAGGCTTGGACAAAGGAAA+AGG 0.518296 5.2:-43041009 MS.gene053964:CDS
CCTTGTTAGGAATTCAGAGA+TGG 0.518359 5.2:+43042097 None:intergenic
TGTCATTGTAACTGGTGCTA+TGG 0.521896 5.2:-43040515 MS.gene053964:CDS
TGTTGGCCTTACTGAGGTGG+AGG 0.527008 5.2:-43040302 MS.gene053964:CDS
GCAGACACGGAGACCATACC+AGG 0.528391 5.2:-43040034 MS.gene053964:CDS
GAACAGTTATGTACCAGGCT+TGG 0.528851 5.2:-43041022 MS.gene053964:intron
TATCACATAATGACCTGGTA+TGG 0.530639 5.2:+43040021 None:intergenic
AGCTAACACTCTTTCTTGAA+CGG 0.533051 5.2:+43042292 None:intergenic
TGTAGTAACTTGTGAGAACT+GGG 0.533261 5.2:+43040929 None:intergenic
AATTCCTACCTCACGAATCA+GGG 0.533465 5.2:-43040336 MS.gene053964:CDS
GGAGTAAAATTAACACACCT+TGG 0.535014 5.2:+43039779 None:intergenic
CGCAACCAAGTCCTCCGCCT+CGG 0.536258 5.2:-43040781 MS.gene053964:CDS
GGATTGAACCGTTACAGAGT+TGG 0.542624 5.2:-43040241 MS.gene053964:CDS
GACTTGTGTAGACATTGTAC+GGG 0.543894 5.2:+43040875 None:intergenic
AATTGGAGAGCGATCACCAT+TGG 0.544899 5.2:+43042133 None:intergenic
TCCAATGTGCAAACCATCTG+AGG 0.551056 5.2:-43040395 MS.gene053964:CDS
TAGACATTGTACGGGTCAAA+GGG 0.552212 5.2:+43040883 None:intergenic
GAATGGAACAGTTATGTACC+AGG 0.552354 5.2:-43041027 MS.gene053964:intron
TGAGAAGGCTGTATAGAAGC+TGG 0.552464 5.2:+43041731 None:intergenic
AACTGTTGGCCTTACTGAGG+TGG 0.556999 5.2:-43040305 MS.gene053964:CDS
TATTCAACACCTCATGACTC+GGG 0.558089 5.2:+43039969 None:intergenic
GTAAGGCCAACAGTTCTAGT+TGG 0.562466 5.2:+43040313 None:intergenic
CTTGTTAGGAATTCAGAGAT+GGG 0.564594 5.2:+43042098 None:intergenic
CATTGTACGGGTCAAAGGGT+CGG 0.565800 5.2:+43040887 None:intergenic
TCAGGGCCAACTAGAACTGT+TGG 0.566536 5.2:-43040319 MS.gene053964:CDS
TATGTACCAGGCTTGGACAA+AGG 0.567681 5.2:-43041015 MS.gene053964:CDS
ACATCATCGTACGTGATGAC+AGG 0.568242 5.2:+43042179 None:intergenic
ACACTTAATTACTACAGTGG+TGG 0.569697 5.2:-43040478 MS.gene053964:CDS
GTAGGCCATGTTTGGCATGA+TGG 0.569951 5.2:+43040363 None:intergenic
GGCCTTACTGAGGTGGAGGT+TGG 0.571411 5.2:-43040298 MS.gene053964:CDS
ATACATGCTTTGGAATGAGT+CGG 0.571825 5.2:+43040831 None:intergenic
GTTCGGCCCAATTGAGCTGA+AGG 0.577120 5.2:+43040719 None:intergenic
GTGAGGTAGGAATTCAAAGT+AGG 0.577752 5.2:+43040345 None:intergenic
CAATATATCACATAATGACC+TGG 0.578248 5.2:+43040016 None:intergenic
TTATAGGCAATGTAGGGTTG+CGG 0.579521 5.2:-43039909 MS.gene053964:CDS
TGCCACATTGGACCCCTGAA+AGG 0.581160 5.2:-43039703 MS.gene053964:CDS
GCTTCCTCAGAATGCTACTT+CGG 0.581209 5.2:-43040430 MS.gene053964:CDS
GAGATTCAGCGTATCGCCAA+TGG 0.582720 5.2:-43042149 MS.gene053964:CDS
AAATGATGCCAATTTCGGGT+CGG 0.583995 5.2:+43040612 None:intergenic
TGCTCAAATGAAAATTGGGA+AGG 0.585393 5.2:-43040577 MS.gene053964:CDS
TTCACAACCCTTATCTCCAA+TGG 0.585801 5.2:+43039872 None:intergenic
GTAACTTGTGAGAACTGGGC+GGG 0.588468 5.2:+43040933 None:intergenic
CCACTGTAGTAATTAAGTGT+TGG 0.589297 5.2:+43040481 None:intergenic
TAAATCAATATAAAGTTCCA+AGG 0.589347 5.2:-43039796 MS.gene053964:CDS
TTGGCCCTGATTCGTGAGGT+AGG 0.591553 5.2:+43040332 None:intergenic
TTAGCCAAGATTTGCCACAT+TGG 0.594038 5.2:-43039715 MS.gene053964:CDS
GCGTCTTTGTCACACGCAGG+TGG 0.596535 5.2:+43042359 None:intergenic
TTGGCGTCTTTGTCACACGC+AGG 0.597121 5.2:+43042356 None:intergenic
GGTTCATAACTGGCATGAGA+AGG 0.599092 5.2:+43041716 None:intergenic
AAATCACCTTATCCTTTCAG+GGG 0.599858 5.2:+43039691 None:intergenic
CGACGCACAAAATGGAATTG+TGG 0.600454 5.2:+43040181 None:intergenic
AGTTATGAAACCCGGTGACA+CGG 0.604464 5.2:+43040209 None:intergenic
ATACACCATCATGCCAAACA+TGG 0.605774 5.2:-43040368 MS.gene053964:CDS
GGTCCCGGTTTGAATGTCGT+GGG 0.606229 5.2:+43040693 None:intergenic
CCATCTCTGAATTCCTAACA+AGG 0.606610 5.2:-43042097 MS.gene053964:intron
GCATACATAGTACATGAAAG+AGG 0.609084 5.2:+43040451 None:intergenic
ATGGATTATGCAATCTCAAG+AGG 0.609927 5.2:-43039827 MS.gene053964:CDS
GGGCGGGCCAATAAACCACC+TGG 0.611629 5.2:+43040949 None:intergenic
TGTGTTGCTTAGTATTGACT+CGG 0.611775 5.2:-43040152 MS.gene053964:CDS
TGTTTGTGAAGTCAGAAACA+AGG 0.618361 5.2:-43040975 MS.gene053964:CDS
GTAACGGTTCAATCCGGCGT+AGG 0.619829 5.2:+43040249 None:intergenic
CTAGTTGGCCCTGATTCGTG+AGG 0.624881 5.2:+43040328 None:intergenic
ATGTATACTCAAATGCTATG+TGG 0.627170 5.2:-43040814 MS.gene053964:CDS
AAGTCAGAAACAAGGACACC+AGG 0.629086 5.2:-43040967 MS.gene053964:CDS
AGCAGACTCCCCGAGTCATG+AGG 0.629198 5.2:-43039978 MS.gene053964:CDS
TGCGTGTGACAAAGACGCCA+AGG 0.632461 5.2:-43042354 MS.gene053964:CDS
ATCCTTTCAGGGGTCCAATG+TGG 0.633793 5.2:+43039701 None:intergenic
CCAACACTTAATTACTACAG+TGG 0.642475 5.2:-43040481 MS.gene053964:CDS
GAATGTCACCAACTCTGTAA+CGG 0.642994 5.2:+43040233 None:intergenic
GCTGAAGGAACCTAATTGCA+CGG 0.646007 5.2:+43040734 None:intergenic
CAGAGGCAAAGACAGCGCCG+AGG 0.652151 5.2:+43040764 None:intergenic
AAGTCCGAAGTAGCATTCTG+AGG 0.652236 5.2:+43040426 None:intergenic
TTCTGAGTTTAACACGAGTG+TGG 0.662200 5.2:-43040074 MS.gene053964:CDS
ACATGCTTTGGAATGAGTCG+GGG 0.673461 5.2:+43040833 None:intergenic
TAGCCCACGACATTCAAACC+GGG 0.688554 5.2:-43040696 MS.gene053964:CDS
ATGGTGTATGAAACCTCAGA+TGG 0.689410 5.2:+43040382 None:intergenic
TAGAACTGTTGGCCTTACTG+AGG 0.692044 5.2:-43040308 MS.gene053964:CDS
ATTGGGAAGGAATAATCACA+AGG 0.697048 5.2:-43040564 MS.gene053964:CDS
ATTCAACACCTCATGACTCG+GGG 0.699615 5.2:+43039970 None:intergenic
TGGTGCTGAGTTATGAAACC+CGG 0.702188 5.2:+43040201 None:intergenic
CTTGTGATCACTACCTACGC+CGG 0.712498 5.2:-43040262 MS.gene053964:CDS
GTACACGAGTTATGCAGACA+CGG 0.716614 5.2:-43040047 MS.gene053964:CDS
TCAGAAACAAGGACACCAGG+TGG 0.735786 5.2:-43040964 MS.gene053964:CDS
AATTGCACGGAGAAGACCAG+AGG 0.736919 5.2:+43040747 None:intergenic
AGTAACTTGTGAGAACTGGG+CGG 0.746811 5.2:+43040932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTATTTTTTTAAATT+GGG - chr5.2:43040255-43040274 MS.gene053964:CDS 0.0%
!!! TATTAATTATTTTTTTAAAT+TGG - chr5.2:43040254-43040273 MS.gene053964:CDS 0.0%
!! GAAAAAAAAAAGAAAAAATT+GGG + chr5.2:43040020-43040039 None:intergenic 10.0%
!!! ATGTACATTTTTATTTTTTT+AGG - chr5.2:43040660-43040679 MS.gene053964:CDS 10.0%
!!! ATTATTGTTATTTTTTTTGA+AGG - chr5.2:43040565-43040584 MS.gene053964:CDS 10.0%
!!! TGATGTTTTATAAATTAAAA+TGG + chr5.2:43040767-43040786 None:intergenic 10.0%
!!! TTTTTTCTTTTTTTTTTTGA+AGG - chr5.2:43040123-43040142 MS.gene053964:CDS 10.0%
!!! TTTTTTTTTTTTAAAAAAGG+AGG - chr5.2:43040853-43040872 MS.gene053964:CDS 10.0%
!! AAAATTCAATATACTAGTAA+TGG + chr5.2:43040825-43040844 None:intergenic 15.0%
!! CGAAAAAAAAAAGAAAAAAT+TGG + chr5.2:43040021-43040040 None:intergenic 15.0%
!!! AGAGTTTTTTTATTTATAAC+TGG - chr5.2:43040530-43040549 MS.gene053964:CDS 15.0%
!!! ATTTTTTCTTTTTTTTTTCG+TGG - chr5.2:43040021-43040040 MS.gene053964:CDS 15.0%
!!! TTGTTTATACTTTAGAAATA+TGG + chr5.2:43040957-43040976 None:intergenic 15.0%
!! GGAAATTATTGTAACAAAAA+CGG - chr5.2:43040586-43040605 MS.gene053964:CDS 20.0%
!! TAAATCAATATAAAGTTCCA+AGG - chr5.2:43042293-43042312 MS.gene053964:CDS 20.0%
!! TACAATGACATCTAAATATT+TGG + chr5.2:43041564-43041583 None:intergenic 20.0%
!! TATAGAGATAAAATAACGTT+GGG + chr5.2:43040887-43040906 None:intergenic 20.0%
!! TTATAGAGATAAAATAACGT+TGG + chr5.2:43040888-43040907 None:intergenic 20.0%
!! TTATCCTAATAAATAGTTGA+AGG + chr5.2:43040482-43040501 None:intergenic 20.0%
!!! AAAAGGGTTATTATTTTGAA+TGG - chr5.2:43041045-43041064 MS.gene053964:intron 20.0%
!!! CGTTATTTTATCTCTATAAA+AGG - chr5.2:43040889-43040908 MS.gene053964:CDS 20.0%
!!! TCATGTGATCTTTTATATTT+TGG + chr5.2:43041442-43041461 None:intergenic 20.0%
!!! TGTTAATTTTACTCCTATAA+TGG - chr5.2:43042318-43042337 MS.gene053964:CDS 20.0%
! AAACACATTAATTAAGCACA+TGG + chr5.2:43040440-43040459 None:intergenic 25.0%
! AAGAATGCTCAAATGAAAAT+TGG - chr5.2:43041507-43041526 MS.gene053964:intron 25.0%
! AATCGTTGAATTCTGTTTAT+AGG - chr5.2:43042164-43042183 MS.gene053964:CDS 25.0%
! AGAATGCTCAAATGAAAATT+GGG - chr5.2:43041508-43041527 MS.gene053964:intron 25.0%
! AGGTCATTATGTGATATATT+GGG - chr5.2:43042075-43042094 MS.gene053964:intron 25.0%
! ATTTGAAAGATGAAACTTAC+AGG + chr5.2:43040397-43040416 None:intergenic 25.0%
! GAAACCTTCAACTATTTATT+AGG - chr5.2:43040475-43040494 MS.gene053964:CDS 25.0%
! TATTTAGATGTCATTGTAAC+TGG - chr5.2:43041566-43041585 MS.gene053964:intron 25.0%
!!! ACATCTAAATATTTGGTGTT+AGG + chr5.2:43041557-43041576 None:intergenic 25.0%
!!! ATATTTTGGTCAGTGATTTT+AGG + chr5.2:43041428-43041447 None:intergenic 25.0%
!!! TCTTTGTTTTGAATGTTTCA+CGG + chr5.2:43039888-43039907 None:intergenic 25.0%
!!! TCTTTTGTTTAGTCGTTAAT+TGG - chr5.2:43040155-43040174 MS.gene053964:CDS 25.0%
!!! TTTTAAAAAAGGAGGATCAA+AGG - chr5.2:43040861-43040880 MS.gene053964:CDS 25.0%
!!! TTTTCTTTTTTTTTTCGTGG+TGG - chr5.2:43040024-43040043 MS.gene053964:CDS 25.0%
AAAAAATTGGGTACCTTGTT+AGG + chr5.2:43040008-43040027 None:intergenic 30.0%
AAAACTGATGCCAACAATTA+AGG - chr5.2:43040319-43040338 MS.gene053964:CDS 30.0%
AAGGAATAATCACAAGGATT+TGG - chr5.2:43041531-43041550 MS.gene053964:intron 30.0%
AATTAAGCACATGGTATATG+TGG + chr5.2:43040431-43040450 None:intergenic 30.0%
ACCATAAATGATGCCAATTT+CGG + chr5.2:43041485-43041504 None:intergenic 30.0%
ATGTATACTCAAATGCTATG+TGG - chr5.2:43041275-43041294 MS.gene053964:intron 30.0%
ATTCTGTTTATAGGCAATGT+AGG - chr5.2:43042173-43042192 MS.gene053964:CDS 30.0%
ATTTGTGCTAAGTGCTAAAA+AGG - chr5.2:43041028-43041047 MS.gene053964:intron 30.0%
CAATATATCACATAATGACC+TGG + chr5.2:43042076-43042095 None:intergenic 30.0%
CAGGTCATTATGTGATATAT+TGG - chr5.2:43042074-43042093 MS.gene053964:intron 30.0%
CTTAAACGCTTCAAACTTAA+CGG - chr5.2:43039853-43039872 MS.gene053964:CDS 30.0%
TTCTGTTTATAGGCAATGTA+GGG - chr5.2:43042174-43042193 MS.gene053964:CDS 30.0%
TTTGTGCTAAGTGCTAAAAA+GGG - chr5.2:43041029-43041048 MS.gene053964:intron 30.0%
!!! GTCAGTGATTTTAGGATTTA+AGG + chr5.2:43041420-43041439 None:intergenic 30.0%
AACTCTTGAATTTGCAGTTC+TGG - chr5.2:43040278-43040297 MS.gene053964:CDS 35.0%
AATTCAAAGTAGGCCATGTT+TGG + chr5.2:43041737-43041756 None:intergenic 35.0%
AATTGGACCATTGGAGATAA+GGG - chr5.2:43042210-43042229 MS.gene053964:CDS 35.0%
ACACTTAATTACTACAGTGG+TGG - chr5.2:43041611-43041630 MS.gene053964:intron 35.0%
AGCTAACACTCTTTCTTGAA+CGG + chr5.2:43039800-43039819 None:intergenic 35.0%
ATTGGGAAGGAATAATCACA+AGG - chr5.2:43041525-43041544 MS.gene053964:intron 35.0%
CACTTAATTACTACAGTGGT+GGG - chr5.2:43041612-43041631 MS.gene053964:intron 35.0%
CCAACACTTAATTACTACAG+TGG - chr5.2:43041608-43041627 MS.gene053964:intron 35.0%
CCACTGTAGTAATTAAGTGT+TGG + chr5.2:43041611-43041630 None:intergenic 35.0%
CCATAAATGATGCCAATTTC+GGG + chr5.2:43041484-43041503 None:intergenic 35.0%
CTTGTTAGGAATTCAGAGAT+GGG + chr5.2:43039994-43040013 None:intergenic 35.0%
GAAACTTACAGGTTCATAAC+TGG + chr5.2:43040386-43040405 None:intergenic 35.0%
GACAATGCCTAGTATATGAA+AGG + chr5.2:43040068-43040087 None:intergenic 35.0%
GCATACATAGTACATGAAAG+AGG + chr5.2:43041641-43041660 None:intergenic 35.0%
GCATTTGAGTATACATGCTT+TGG + chr5.2:43041271-43041290 None:intergenic 35.0%
GGAGTAAAATTAACACACCT+TGG + chr5.2:43042313-43042332 None:intergenic 35.0%
TATCACATAATGACCTGGTA+TGG + chr5.2:43042071-43042090 None:intergenic 35.0%
TCAACAATTTCGTCACCATT+AGG - chr5.2:43039706-43039725 MS.gene053964:CDS 35.0%
TCCAACTCTTCCTTAATTGT+TGG + chr5.2:43040332-43040351 None:intergenic 35.0%
TGCTCAAATGAAAATTGGGA+AGG - chr5.2:43041512-43041531 MS.gene053964:intron 35.0%
TGTTTGTGAAGTCAGAAACA+AGG - chr5.2:43041114-43041133 MS.gene053964:intron 35.0%
! ATGGATTATGCAATCTCAAG+AGG - chr5.2:43042262-43042281 MS.gene053964:CDS 35.0%
! ATGGTTTGCACATTGGATTA+AGG + chr5.2:43041691-43041710 None:intergenic 35.0%
! CGTTAAGTTTGAAGCGTTTA+AGG + chr5.2:43039855-43039874 None:intergenic 35.0%
! TGTAGTAACTTGTGAGAACT+GGG + chr5.2:43041163-43041182 None:intergenic 35.0%
! TTGTAGTAACTTGTGAGAAC+TGG + chr5.2:43041164-43041183 None:intergenic 35.0%
!! ATACATGCTTTGGAATGAGT+CGG + chr5.2:43041261-43041280 None:intergenic 35.0%
!! GAATAGGTGTTGTTTGGAAA+TGG - chr5.2:43042138-43042157 MS.gene053964:CDS 35.0%
!! TACTCCTATAATGGAGCTTT+TGG - chr5.2:43042327-43042346 MS.gene053964:CDS 35.0%
!! TGTGTTGCTTAGTATTGACT+CGG - chr5.2:43041937-43041956 MS.gene053964:intron 35.0%
!!! CTTTTTTTTTTCGTGGTGGT+CGG - chr5.2:43040028-43040047 MS.gene053964:CDS 35.0%
!!! GATTTTAGGATTTAAGGTCC+CGG + chr5.2:43041414-43041433 None:intergenic 35.0%
!!! TTTTTTTTTTCGTGGTGGTC+GGG - chr5.2:43040029-43040048 MS.gene053964:CDS 35.0%
AACTCTGTAACGGTTCAATC+CGG + chr5.2:43041849-43041868 None:intergenic 40.0%
AATTCCTACCTCACGAATCA+GGG - chr5.2:43041753-43041772 MS.gene053964:CDS 40.0%
ACCCAGACCTTTCATATACT+AGG - chr5.2:43040058-43040077 MS.gene053964:CDS 40.0%
ATACACCATCATGCCAAACA+TGG - chr5.2:43041721-43041740 MS.gene053964:CDS 40.0%
ATGGTGTATGAAACCTCAGA+TGG + chr5.2:43041710-43041729 None:intergenic 40.0%
CAATTGGACCATTGGAGATA+AGG - chr5.2:43042209-43042228 MS.gene053964:CDS 40.0%
CATTCTTTCGACGCACAAAA+TGG + chr5.2:43041919-43041938 None:intergenic 40.0%
CCATCTCTGAATTCCTAACA+AGG - chr5.2:43039992-43040011 MS.gene053964:CDS 40.0%
CCCGAAATTGGCATCATTTA+TGG - chr5.2:43041481-43041500 MS.gene053964:intron 40.0%
CCTTGTTAGGAATTCAGAGA+TGG + chr5.2:43039995-43040014 None:intergenic 40.0%
CTATTCAACACCTCATGACT+CGG + chr5.2:43042124-43042143 None:intergenic 40.0%
GAATGGAACAGTTATGTACC+AGG - chr5.2:43041062-43041081 MS.gene053964:intron 40.0%
GAATGTCACCAACTCTGTAA+CGG + chr5.2:43041859-43041878 None:intergenic 40.0%
GACTTGTGTAGACATTGTAC+GGG + chr5.2:43041217-43041236 None:intergenic 40.0%
GAGTCCAAAAGCTCCATTAT+AGG + chr5.2:43042334-43042353 None:intergenic 40.0%
GCCAACAATTAAGGAAGAGT+TGG - chr5.2:43040328-43040347 MS.gene053964:CDS 40.0%
GCCTAGTATATGAAAGGTCT+GGG + chr5.2:43040062-43040081 None:intergenic 40.0%
GGACTTGTGTAGACATTGTA+CGG + chr5.2:43041218-43041237 None:intergenic 40.0%
GGATCATTCAATTGGACCAT+TGG - chr5.2:43042201-43042220 MS.gene053964:CDS 40.0%
GTGAGGTAGGAATTCAAAGT+AGG + chr5.2:43041747-43041766 None:intergenic 40.0%
TAGACATTGTACGGGTCAAA+GGG + chr5.2:43041209-43041228 None:intergenic 40.0%
TAGGTTCCTTCAGCTCAATT+GGG - chr5.2:43041364-43041383 MS.gene053964:intron 40.0%
TATTCAACACCTCATGACTC+GGG + chr5.2:43042123-43042142 None:intergenic 40.0%
TGCCTAGTATATGAAAGGTC+TGG + chr5.2:43040063-43040082 None:intergenic 40.0%
TTAGCCAAGATTTGCCACAT+TGG - chr5.2:43042374-43042393 MS.gene053964:CDS 40.0%
TTAGGTTCCTTCAGCTCAAT+TGG - chr5.2:43041363-43041382 MS.gene053964:intron 40.0%
TTATAGGCAATGTAGGGTTG+CGG - chr5.2:43042180-43042199 MS.gene053964:CDS 40.0%
TTCACAACCCTTATCTCCAA+TGG + chr5.2:43042220-43042239 None:intergenic 40.0%
TTCTGAGTTTAACACGAGTG+TGG - chr5.2:43042015-43042034 MS.gene053964:intron 40.0%
TTTGAATGTTTCACGGTCGA+TGG + chr5.2:43039881-43039900 None:intergenic 40.0%
! AAATGATGCCAATTTCGGGT+CGG + chr5.2:43041480-43041499 None:intergenic 40.0%
! AATGGAGCTTTTGGACTCTA+GGG - chr5.2:43042336-43042355 MS.gene053964:CDS 40.0%
! TAATGGAGCTTTTGGACTCT+AGG - chr5.2:43042335-43042354 MS.gene053964:CDS 40.0%
! TGTCATTGTAACTGGTGCTA+TGG - chr5.2:43041574-43041593 MS.gene053964:intron 40.0%
! TGTGAAGAGTGGAACTTTTG+AGG - chr5.2:43042234-43042253 MS.gene053964:CDS 40.0%
!! GGTGTTGAATAGGTGTTGTT+TGG - chr5.2:43042132-43042151 MS.gene053964:CDS 40.0%
!! TACATGCTTTGGAATGAGTC+GGG + chr5.2:43041260-43041279 None:intergenic 40.0%
!! TGGAACTTTTGAGGAGCTTA+TGG - chr5.2:43042243-43042262 MS.gene053964:CDS 40.0%
!!! TTTTTTTTTCGTGGTGGTCG+GGG - chr5.2:43040030-43040049 MS.gene053964:CDS 40.0%
AAGGACACCAGGTGGTTTAT+TGG - chr5.2:43041133-43041152 MS.gene053964:intron 45.0%
AAGTCAGAAACAAGGACACC+AGG - chr5.2:43041122-43041141 MS.gene053964:intron 45.0%
AAGTCCGAAGTAGCATTCTG+AGG + chr5.2:43041666-43041685 None:intergenic 45.0%
AATTGGAGAGCGATCACCAT+TGG + chr5.2:43039959-43039978 None:intergenic 45.0%
ACATCATCGTACGTGATGAC+AGG + chr5.2:43039913-43039932 None:intergenic 45.0%
AGGGTTGCGGATCATTCAAT+TGG - chr5.2:43042193-43042212 MS.gene053964:CDS 45.0%
AGTTATGAAACCCGGTGACA+CGG + chr5.2:43041883-43041902 None:intergenic 45.0%
ATGGGATGAGCAGAGAGAAT+TGG + chr5.2:43039976-43039995 None:intergenic 45.0%
ATTCAACACCTCATGACTCG+GGG + chr5.2:43042122-43042141 None:intergenic 45.0%
ATTGGACCCCTGAAAGGATA+AGG - chr5.2:43042392-43042411 MS.gene053964:CDS 45.0%
CACTCTTTCTTGAACGGCAT+CGG + chr5.2:43039794-43039813 None:intergenic 45.0%
CGACGCACAAAATGGAATTG+TGG + chr5.2:43041911-43041930 None:intergenic 45.0%
GAACAGTTATGTACCAGGCT+TGG - chr5.2:43041067-43041086 MS.gene053964:intron 45.0%
GAATTCCTACCTCACGAATC+AGG - chr5.2:43041752-43041771 MS.gene053964:CDS 45.0%
GAGATAAGGGTTGTGAAGAG+TGG - chr5.2:43042223-43042242 MS.gene053964:CDS 45.0%
GCTGAAGGAACCTAATTGCA+CGG + chr5.2:43041358-43041377 None:intergenic 45.0%
GGATTGAACCGTTACAGAGT+TGG - chr5.2:43041848-43041867 MS.gene053964:intron 45.0%
GGTTCATAACTGGCATGAGA+AGG + chr5.2:43040376-43040395 None:intergenic 45.0%
GTACACGAGTTATGCAGACA+CGG - chr5.2:43042042-43042061 MS.gene053964:intron 45.0%
GTAGACATTGTACGGGTCAA+AGG + chr5.2:43041210-43041229 None:intergenic 45.0%
GTCAGAGCTACAAAAAGCAG+TGG - chr5.2:43041973-43041992 MS.gene053964:intron 45.0%
TATCAAACCCGACCCGAAAT+TGG - chr5.2:43041469-43041488 MS.gene053964:intron 45.0%
TATGTACCAGGCTTGGACAA+AGG - chr5.2:43041074-43041093 MS.gene053964:intron 45.0%
TCCAATGTGCAAACCATCTG+AGG - chr5.2:43041694-43041713 MS.gene053964:intron 45.0%
TGAGAAGGCTGTATAGAAGC+TGG + chr5.2:43040361-43040380 None:intergenic 45.0%
! AATGATGCCAATTTCGGGTC+GGG + chr5.2:43041479-43041498 None:intergenic 45.0%
! ACCTCAGATGGTTTGCACAT+TGG + chr5.2:43041698-43041717 None:intergenic 45.0%
! AGTAACTTGTGAGAACTGGG+CGG + chr5.2:43041160-43041179 None:intergenic 45.0%
! GCTTCCTCAGAATGCTACTT+CGG - chr5.2:43041659-43041678 MS.gene053964:intron 45.0%
! GTAAGGCCAACAGTTCTAGT+TGG + chr5.2:43041779-43041798 None:intergenic 45.0%
! TAGGCATTGTCTCTACCAAC+TGG - chr5.2:43040077-43040096 MS.gene053964:CDS 45.0%
! TGGTGCTGAGTTATGAAACC+CGG + chr5.2:43041891-43041910 None:intergenic 45.0%
! TTCGATGAATCGAAGTGCCT+TGG + chr5.2:43039755-43039774 None:intergenic 45.0%
!! ACATGCTTTGGAATGAGTCG+GGG + chr5.2:43041259-43041278 None:intergenic 45.0%
!! CGAGTCATGAGGTGTTGAAT+AGG - chr5.2:43042122-43042141 MS.gene053964:CDS 45.0%
!! TAGAACTGTTGGCCTTACTG+AGG - chr5.2:43041781-43041800 MS.gene053964:CDS 45.0%
!! TTGAATGTCGTGGGCTAGTT+CGG + chr5.2:43041390-43041409 None:intergenic 45.0%
!! TATATATAAAAATAAAAAGT+AGG + chr5.2:43040210-43040229 None:intergenic 5.0%
!!! CATTTTTTTTTTTTTAAAAA+AGG - chr5.2:43040850-43040869 MS.gene053964:CDS 5.0%
!!! TTATATATAATATTTTTAGA+TGG - chr5.2:43040221-43040240 MS.gene053964:CDS 5.0%
AATTGCACGGAGAAGACCAG+AGG + chr5.2:43041345-43041364 None:intergenic 50.0%
ATCCTTTCAGGGGTCCAATG+TGG + chr5.2:43042391-43042410 None:intergenic 50.0%
ATTGTACGGGTCAAAGGGTC+GGG + chr5.2:43041204-43041223 None:intergenic 50.0%
CATTGTACGGGTCAAAGGGT+CGG + chr5.2:43041205-43041224 None:intergenic 50.0%
CCAGGCTTGGACAAAGGAAA+AGG - chr5.2:43041080-43041099 MS.gene053964:intron 50.0%
CTAGCCCACGACATTCAAAC+CGG - chr5.2:43041392-43041411 MS.gene053964:intron 50.0%
CTTGTGATCACTACCTACGC+CGG - chr5.2:43041827-43041846 MS.gene053964:intron 50.0%
GAGATTCAGCGTATCGCCAA+TGG - chr5.2:43039940-43039959 MS.gene053964:CDS 50.0%
GGGCAGAGAATGGCTTCATT+TGG + chr5.2:43041239-43041258 None:intergenic 50.0%
GGGTCCAATGTGGCAAATCT+TGG + chr5.2:43042381-43042400 None:intergenic 50.0%
GTAGGCCATGTTTGGCATGA+TGG + chr5.2:43041729-43041748 None:intergenic 50.0%
TAGCCCACGACATTCAAACC+GGG - chr5.2:43041393-43041412 MS.gene053964:intron 50.0%
TCAGAAACAAGGACACCAGG+TGG - chr5.2:43041125-43041144 MS.gene053964:intron 50.0%
TCAGGGCCAACTAGAACTGT+TGG - chr5.2:43041770-43041789 MS.gene053964:CDS 50.0%
TTCCAACCTCCACCTCAGTA+AGG + chr5.2:43041796-43041815 None:intergenic 50.0%
TTGGCGATACGCTGAATCTC+TGG + chr5.2:43039940-43039959 None:intergenic 50.0%
! CCTTTTCCTTTGTCCAAGCC+TGG + chr5.2:43041083-43041102 None:intergenic 50.0%
! CTGGTCTTCTCCGTGCAATT+AGG - chr5.2:43041345-43041364 MS.gene053964:intron 50.0%
! GTAACTTGTGAGAACTGGGC+GGG + chr5.2:43041159-43041178 None:intergenic 50.0%
! TGCAGTTCTGGTACTTCAGC+TGG - chr5.2:43040290-43040309 MS.gene053964:CDS 50.0%
!! AACTGTTGGCCTTACTGAGG+TGG - chr5.2:43041784-43041803 MS.gene053964:CDS 50.0%
ATCGCGAGCTTAGCTCCAGT+TGG + chr5.2:43040095-43040114 None:intergenic 55.0%
GAATGAGTCGGGGCAGAGAA+TGG + chr5.2:43041249-43041268 None:intergenic 55.0%
GGTGACATTCTCCGTGTCAC+CGG - chr5.2:43041869-43041888 MS.gene053964:intron 55.0%
GTAACGGTTCAATCCGGCGT+AGG + chr5.2:43041843-43041862 None:intergenic 55.0%
GTGACATTCTCCGTGTCACC+GGG - chr5.2:43041870-43041889 MS.gene053964:intron 55.0%
GTTCGGCCCAATTGAGCTGA+AGG + chr5.2:43041373-43041392 None:intergenic 55.0%
TCACACGCAGGTGGACCTAA+TGG + chr5.2:43039724-43039743 None:intergenic 55.0%
TGCCACATTGGACCCCTGAA+AGG - chr5.2:43042386-43042405 MS.gene053964:CDS 55.0%
TGCGTGTGACAAAGACGCCA+AGG - chr5.2:43039735-43039754 MS.gene053964:CDS 55.0%
TTGGCGTCTTTGTCACACGC+AGG + chr5.2:43039736-43039755 None:intergenic 55.0%
! AGGTCCCGGTTTGAATGTCG+TGG + chr5.2:43041400-43041419 None:intergenic 55.0%
! CTAGTTGGCCCTGATTCGTG+AGG + chr5.2:43041764-43041783 None:intergenic 55.0%
! GGTCCCGGTTTGAATGTCGT+GGG + chr5.2:43041399-43041418 None:intergenic 55.0%
! TTGGCCCTGATTCGTGAGGT+AGG + chr5.2:43041760-43041779 None:intergenic 55.0%
!! GGAGCTTTTGGACTCTAGGG+TGG - chr5.2:43042339-43042358 MS.gene053964:CDS 55.0%
!! TGTTGGCCTTACTGAGGTGG+AGG - chr5.2:43041787-43041806 MS.gene053964:CDS 55.0%
AGCAGACTCCCCGAGTCATG+AGG - chr5.2:43042111-43042130 MS.gene053964:CDS 60.0%
GCAGACACGGAGACCATACC+AGG - chr5.2:43042055-43042074 MS.gene053964:intron 60.0%
GCGTCTTTGTCACACGCAGG+TGG + chr5.2:43039733-43039752 None:intergenic 60.0%
GGCCTTACTGAGGTGGAGGT+TGG - chr5.2:43041791-43041810 MS.gene053964:CDS 60.0%
CAGAGGCAAAGACAGCGCCG+AGG + chr5.2:43041328-43041347 None:intergenic 65.0%
CGCAACCAAGTCCTCCGCCT+CGG - chr5.2:43041308-43041327 MS.gene053964:intron 65.0%
CTCGGCGCTGTCTTTGCCTC+TGG - chr5.2:43041326-43041345 MS.gene053964:intron 65.0%
GGGCGGGCCAATAAACCACC+TGG + chr5.2:43041143-43041162 None:intergenic 65.0%
! AGGCAAAGACAGCGCCGAGG+CGG + chr5.2:43041325-43041344 None:intergenic 65.0%
! CAAAGACAGCGCCGAGGCGG+AGG + chr5.2:43041322-43041341 None:intergenic 70.0%
! CAGCGCCGAGGCGGAGGACT+TGG + chr5.2:43041316-43041335 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 43039694 43042417 43039694 ID=MS.gene053964
chr5.2 mRNA 43039694 43042417 43039694 ID=MS.gene053964.t1;Parent=MS.gene053964
chr5.2 exon 43042098 43042417 43042098 ID=MS.gene053964.t1.exon1;Parent=MS.gene053964.t1
chr5.2 CDS 43042098 43042417 43042098 ID=cds.MS.gene053964.t1;Parent=MS.gene053964.t1
chr5.2 exon 43041715 43041816 43041715 ID=MS.gene053964.t1.exon2;Parent=MS.gene053964.t1
chr5.2 CDS 43041715 43041816 43041715 ID=cds.MS.gene053964.t1;Parent=MS.gene053964.t1
chr5.2 exon 43039694 43041038 43039694 ID=MS.gene053964.t1.exon3;Parent=MS.gene053964.t1
chr5.2 CDS 43039694 43041038 43039694 ID=cds.MS.gene053964.t1;Parent=MS.gene053964.t1
Gene Sequence

>MS.gene053964

ATGGCTGTTGATTCAACAATTTCGTCACCATTAGGTCCACCTGCGTGTGACAAAGACGCCAAGGCACTTCGATTCATCGAAGAGATGACTCGAAATGCCGATGCCGTTCAAGAAAGAGTGTTAGCTGAGATTCTAAGCAGAAACGCAGAGACAGAATACCTTAAACGCTTCAAACTTAACGGCGCCATCGACCGTGAAACATTCAAAACAAAGATTCCTGTCATCACGTACGATGATGTTCAACCAGAGATTCAGCGTATCGCCAATGGTGATCGCTCTCCAATTCTCTCTGCTCATCCCATCTCTGAATTCCTAACAAGGTACCCAATTTTTTCTTTTTTTTTTCGTGGTGGTCGGGGTTTGAACCCAGACCTTTCATATACTAGGCATTGTCTCTACCAACTGGAGCTAAGCTCGCGATGACTAATTTTTTTTCTTTTTTTTTTTGAAGGAATTTTTTTTCTTTTGTTTAGTCGTTAATTGGTCTAAAATTTTATCTAAAACTTTTTTTGACCTACTTTTTATTTTTATATATAATATTTTTAGATGGCTCTGTTAATTATTAATTATTTTTTTAAATTGGGAACTCTTGAATTTGCAGTTCTGGTACTTCAGCTGGTGAAAGAAAACTGATGCCAACAATTAAGGAAGAGTTGGATCGTCGCCAGCTTCTATACAGCCTTCTCATGCCAGTTATGAACCTGTAAGTTTCATCTTTCAAATAATTGAGTCTTCCACATATACCATGTGCTTAATTAATGTGTTTTTGTTTTTATTCAGCGAAACCTTCAACTATTTATTAGGATAATATAGATAGTTTTCTTGATCAAACATTTAGAGTTTTTTTATTTATAACTGGAATTTTCAAATTATTATTGTTATTTTTTTTGAAGGAAATTATTGTAACAAAAACGGTAGTTAATATTCTTTTATCTTTATTTTACTAAAAAAAATTCTTTTACTTTTATGTACATTTTTATTTTTTTAGGTCATTAATTAAAAAAATACATCAAATTTTTAATTTATAAAACATAAAAAAAAATTACTTTAAAGTATTTCATTTGATGTGACCATTTTAATTTATAAAACATCAAAAAAAATTACTTTAAAGTATTTCATTTGATGTGACCATTACTAGTATATTGAATTTTTGTCTCATTTTTTTTTTTTTAAAAAAGGAGGATCAAAGGCCCAACGTTATTTTATCTCTATAAAAGGAAAATCGATCTGAAATTTTTAATAAATTTCATACTAATATTTCCATATTTCTAAAGTATAAACAATACTTAATTTTTTTTTTTTTTTGTATAAAGATAGTTAAAATTAATTACTGTATTTGTGCTAAGTGCTAAAAAGGGTTATTATTTTGAATGGAACAGTTATGTACCAGGCTTGGACAAAGGAAAAGGCTTATACTTTTTGTTTGTGAAGTCAGAAACAAGGACACCAGGTGGTTTATTGGCCCGCCCAGTTCTCACAAGTTACTACAAAAGTGAACATTTCAAAACCCGACCCTTTGACCCGTACAATGTCTACACAAGTCCAAATGAAGCCATTCTCTGCCCCGACTCATTCCAAAGCATGTATACTCAAATGCTATGTGGACTCATAGAACGCAACCAAGTCCTCCGCCTCGGCGCTGTCTTTGCCTCTGGTCTTCTCCGTGCAATTAGGTTCCTTCAGCTCAATTGGGCCGAACTAGCCCACGACATTCAAACCGGGACCTTAAATCCTAAAATCACTGACCAAAATATAAAAGATCACATGAAACATTTTATCAAACCCGACCCGAAATTGGCATCATTTATGGTGCAAGAATGCTCAAATGAAAATTGGGAAGGAATAATCACAAGGATTTGGCCTAACACCAAATATTTAGATGTCATTGTAACTGGTGCTATGGCTCAATACATTCCAACACTTAATTACTACAGTGGTGGGTTACCTCTTTCATGTACTATGTATGCTTCCTCAGAATGCTACTTCGGACTTAACCTTAATCCAATGTGCAAACCATCTGAGGTTTCATACACCATCATGCCAAACATGGCCTACTTTGAATTCCTACCTCACGAATCAGGGCCAACTAGAACTGTTGGCCTTACTGAGGTGGAGGTTGGAAAAGAGTATGAGCTTGTGATCACTACCTACGCCGGATTGAACCGTTACAGAGTTGGTGACATTCTCCGTGTCACCGGGTTTCATAACTCAGCACCACAATTCCATTTTGTGCGTCGAAAGAATGTGTTGCTTAGTATTGACTCGGATAAAACAGATGAGTCAGAGCTACAAAAAGCAGTGGAGAATGCTTCAAAGTTGCTTTCTGAGTTTAACACGAGTGTGGTTGAGTACACGAGTTATGCAGACACGGAGACCATACCAGGTCATTATGTGATATATTGGGAGTTGTTGACAAAAGCAGACTCCCCGAGTCATGAGGTGTTGAATAGGTGTTGTTTGGAAATGGAGCAATCGTTGAATTCTGTTTATAGGCAATGTAGGGTTGCGGATCATTCAATTGGACCATTGGAGATAAGGGTTGTGAAGAGTGGAACTTTTGAGGAGCTTATGGATTATGCAATCTCAAGAGGTGCTTCAATAAATCAATATAAAGTTCCAAGGTGTGTTAATTTTACTCCTATAATGGAGCTTTTGGACTCTAGGGTGGTCTCTGTTCACTTTAGCCAAGATTTGCCACATTGGACCCCTGAAAGGATAAGGTGA
Protein sequence

>MS.gene053964.t1

MAVDSTISSPLGPPACDKDAKALRFIEEMTRNADAVQERVLAEILSRNAETEYLKRFKLNGAIDRETFKTKIPVITYDDVQPEIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPFDPYNVYTSPNEAILCPDSFQSMYTQMLCGLIERNQVLRLGAVFASGLLRAIRFLQLNWAELAHDIQTGTLNPKITDQNIKDHMKHFIKPDPKLASFMVQECSNENWEGIITRIWPNTKYLDVIVTGAMAQYIPTLNYYSGGLPLSCTMYASSECYFGLNLNPMCKPSEVSYTIMPNMAYFEFLPHESGPTRTVGLTEVEVGKEYELVITTYAGLNRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASKLLSEFNTSVVEYTSYADTETIPGHYVIYWELLTKADSPSHEVLNRCCLEMEQSLNSVYRQCRVADHSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSQDLPHWTPERIR