Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79758.t1 | XP_013444664.1 | 61.8 | 348 | 10 | 4 | 1 | 225 | 1 | 348 | 9.20E-91 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79758.t1 | Q9FL62 | 55.4 | 92 | 39 | 1 | 45 | 136 | 72 | 161 | 4.8e-24 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79758.t1 | A0A072TMF1 | 61.8 | 348 | 10 | 4 | 1 | 225 | 1 | 348 | 6.6e-91 | 343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79758.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene79758 | 0.838556 | 2.68E-57 | -1.69E-46 |
| MS.gene050669 | MS.gene79758 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene79758 | 0.800859 | 1.18E-48 | -1.69E-46 |
| MS.gene051490 | MS.gene79758 | 0.802263 | 6.10E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene79758 | 0.804381 | 2.22E-49 | -1.69E-46 |
| MS.gene052493 | MS.gene79758 | 0.819657 | 1.04E-52 | -1.69E-46 |
| MS.gene05410 | MS.gene79758 | 0.820099 | 8.20E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene79758 | 0.816337 | 5.83E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene79758 | 0.826805 | 2.22E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene79758 | 0.833992 | 3.88E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene79758 | 0.821112 | 4.80E-53 | -1.69E-46 |
| MS.gene058526 | MS.gene79758 | 0.841551 | 4.44E-58 | -1.69E-46 |
| MS.gene058527 | MS.gene79758 | 0.83885 | 2.25E-57 | -1.69E-46 |
| MS.gene058528 | MS.gene79758 | 0.842508 | 2.48E-58 | -1.69E-46 |
| MS.gene05861 | MS.gene79758 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene05862 | MS.gene79758 | 0.802983 | 4.33E-49 | -1.69E-46 |
| MS.gene05969 | MS.gene79758 | 0.808532 | 2.96E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene79758 | 0.845846 | 3.15E-59 | -1.69E-46 |
| MS.gene060373 | MS.gene79758 | 0.808747 | 2.66E-50 | -1.69E-46 |
| MS.gene060697 | MS.gene79758 | 0.845832 | 3.18E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene79758 | 0.846072 | 2.73E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79758.t1 | MTR_8g027860 | 58.621 | 348 | 21 | 7 | 1 | 225 | 1 | 348 | 3.35e-124 | 355 |
| MS.gene79758.t1 | MTR_7g117200 | 58.268 | 127 | 46 | 3 | 12 | 136 | 45 | 166 | 4.48e-42 | 145 |
| MS.gene79758.t1 | MTR_3g090860 | 62.766 | 94 | 33 | 2 | 46 | 137 | 89 | 182 | 6.11e-37 | 132 |
| MS.gene79758.t1 | MTR_8g099350 | 47.059 | 136 | 62 | 3 | 12 | 137 | 46 | 181 | 1.70e-33 | 124 |
| MS.gene79758.t1 | MTR_7g073380 | 50.667 | 75 | 29 | 1 | 63 | 137 | 106 | 172 | 2.43e-19 | 84.7 |
| MS.gene79758.t1 | MTR_7g073430 | 48.649 | 74 | 30 | 1 | 63 | 136 | 105 | 170 | 1.16e-16 | 77.0 |
| MS.gene79758.t1 | MTR_7g109600 | 47.917 | 96 | 43 | 4 | 43 | 133 | 3 | 96 | 1.44e-16 | 76.6 |
| MS.gene79758.t1 | MTR_3g093830 | 52.632 | 57 | 27 | 0 | 81 | 137 | 120 | 176 | 1.09e-15 | 74.7 |
| MS.gene79758.t1 | MTR_8g005750 | 37.838 | 111 | 54 | 2 | 62 | 164 | 84 | 187 | 3.24e-15 | 73.2 |
| MS.gene79758.t1 | MTR_5g067680 | 52.239 | 67 | 32 | 0 | 70 | 136 | 184 | 250 | 3.68e-15 | 73.6 |
| MS.gene79758.t1 | MTR_5g067700 | 56.250 | 48 | 21 | 0 | 81 | 128 | 99 | 146 | 2.91e-14 | 69.7 |
| MS.gene79758.t1 | MTR_1g009613 | 39.175 | 97 | 53 | 3 | 60 | 153 | 235 | 328 | 1.14e-13 | 69.3 |
| MS.gene79758.t1 | MTR_0002s1250 | 34.351 | 131 | 69 | 5 | 63 | 193 | 94 | 207 | 1.45e-13 | 68.2 |
| MS.gene79758.t1 | MTR_7g028415 | 58.000 | 50 | 18 | 1 | 87 | 136 | 92 | 138 | 1.79e-13 | 66.6 |
| MS.gene79758.t1 | MTR_7g028710 | 58.000 | 50 | 18 | 1 | 87 | 136 | 92 | 138 | 1.79e-13 | 66.6 |
| MS.gene79758.t1 | MTR_4g127040 | 38.947 | 95 | 54 | 3 | 58 | 151 | 216 | 307 | 2.28e-13 | 68.2 |
| MS.gene79758.t1 | MTR_8g098945 | 49.123 | 57 | 27 | 1 | 81 | 137 | 122 | 176 | 2.69e-13 | 67.8 |
| MS.gene79758.t1 | MTR_2g075750 | 50.980 | 51 | 25 | 0 | 87 | 137 | 27 | 77 | 3.50e-13 | 65.9 |
| MS.gene79758.t1 | MTR_2g075680 | 41.463 | 82 | 39 | 2 | 57 | 137 | 124 | 197 | 3.51e-13 | 67.8 |
| MS.gene79758.t1 | MTR_2g075700 | 38.961 | 77 | 38 | 2 | 62 | 137 | 125 | 193 | 5.28e-13 | 67.4 |
| MS.gene79758.t1 | MTR_2g075610 | 52.000 | 50 | 24 | 0 | 88 | 137 | 29 | 78 | 5.65e-13 | 65.5 |
| MS.gene79758.t1 | MTR_7g079040 | 37.778 | 90 | 54 | 1 | 48 | 137 | 114 | 201 | 6.65e-13 | 67.0 |
| MS.gene79758.t1 | MTR_7g079010 | 30.233 | 129 | 78 | 3 | 12 | 136 | 66 | 186 | 8.62e-13 | 65.5 |
| MS.gene79758.t1 | MTR_5g016610 | 39.394 | 99 | 55 | 3 | 60 | 156 | 172 | 267 | 9.31e-13 | 66.2 |
| MS.gene79758.t1 | MTR_2g075690 | 29.054 | 148 | 83 | 4 | 32 | 166 | 94 | 232 | 1.23e-12 | 66.2 |
| MS.gene79758.t1 | MTR_8g087000 | 29.747 | 158 | 94 | 6 | 63 | 209 | 45 | 196 | 9.65e-12 | 62.8 |
| MS.gene79758.t1 | MTR_8g096730 | 48.000 | 50 | 23 | 1 | 87 | 136 | 69 | 115 | 1.79e-11 | 60.5 |
| MS.gene79758.t1 | MTR_8g028565 | 37.363 | 91 | 55 | 1 | 47 | 137 | 114 | 202 | 1.87e-11 | 62.8 |
| MS.gene79758.t1 | MTR_3g009470 | 32.331 | 133 | 77 | 5 | 14 | 136 | 196 | 325 | 3.06e-11 | 62.8 |
| MS.gene79758.t1 | MTR_4g082580 | 51.020 | 49 | 21 | 1 | 88 | 136 | 145 | 190 | 3.57e-11 | 62.4 |
| MS.gene79758.t1 | MTR_2g083870 | 37.647 | 85 | 43 | 3 | 52 | 133 | 46 | 123 | 4.06e-11 | 61.2 |
| MS.gene79758.t1 | MTR_7g080020 | 31.148 | 122 | 64 | 4 | 30 | 143 | 226 | 335 | 4.45e-11 | 62.4 |
| MS.gene79758.t1 | MTR_1g099600 | 41.667 | 72 | 35 | 2 | 62 | 133 | 164 | 228 | 4.56e-11 | 61.6 |
| MS.gene79758.t1 | MTR_5g043880 | 42.222 | 90 | 47 | 3 | 48 | 136 | 84 | 169 | 4.67e-11 | 61.2 |
| MS.gene79758.t1 | MTR_3g009470 | 32.331 | 133 | 77 | 5 | 14 | 136 | 196 | 325 | 5.10e-11 | 62.0 |
| MS.gene79758.t1 | MTR_8g087000 | 31.746 | 126 | 75 | 4 | 89 | 209 | 78 | 197 | 6.90e-11 | 60.5 |
| MS.gene79758.t1 | MTR_5g091390 | 50.000 | 50 | 22 | 1 | 87 | 136 | 156 | 202 | 8.34e-11 | 60.8 |
| MS.gene79758.t1 | MTR_2g016770 | 36.000 | 75 | 46 | 1 | 62 | 136 | 9 | 81 | 8.50e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79758.t1 | AT5G24110 | 55.435 | 92 | 39 | 1 | 45 | 136 | 72 | 161 | 2.73e-32 | 119 |
| MS.gene79758.t1 | AT4G23810 | 43.796 | 137 | 60 | 4 | 10 | 137 | 79 | 207 | 8.37e-31 | 115 |
| MS.gene79758.t1 | AT4G11070 | 57.732 | 97 | 35 | 2 | 45 | 137 | 64 | 158 | 5.70e-30 | 112 |
| MS.gene79758.t1 | AT4G11070 | 57.732 | 97 | 35 | 2 | 45 | 137 | 96 | 190 | 8.09e-30 | 113 |
| MS.gene79758.t1 | AT2G46400 | 61.250 | 80 | 30 | 1 | 59 | 137 | 74 | 153 | 1.64e-26 | 103 |
| MS.gene79758.t1 | AT3G56400 | 42.000 | 100 | 55 | 1 | 39 | 138 | 74 | 170 | 1.33e-18 | 82.8 |
| MS.gene79758.t1 | AT2G40750 | 48.750 | 80 | 36 | 1 | 63 | 137 | 122 | 201 | 1.45e-18 | 83.2 |
| MS.gene79758.t1 | AT5G45260 | 41.509 | 106 | 51 | 2 | 28 | 133 | 1159 | 1253 | 1.96e-16 | 78.2 |
| MS.gene79758.t1 | AT2G40740 | 54.000 | 50 | 23 | 0 | 88 | 137 | 173 | 222 | 1.11e-14 | 72.0 |
| MS.gene79758.t1 | AT2G40740 | 54.000 | 50 | 23 | 0 | 88 | 137 | 182 | 231 | 1.15e-14 | 72.0 |
| MS.gene79758.t1 | AT4G24240 | 34.328 | 134 | 71 | 6 | 25 | 154 | 229 | 349 | 7.98e-14 | 70.1 |
| MS.gene79758.t1 | AT3G58710 | 40.566 | 106 | 52 | 5 | 49 | 146 | 27 | 129 | 3.60e-13 | 67.4 |
| MS.gene79758.t1 | AT2G23320 | 34.746 | 118 | 64 | 4 | 29 | 144 | 190 | 296 | 4.57e-13 | 67.4 |
| MS.gene79758.t1 | AT3G58710 | 38.679 | 106 | 55 | 4 | 49 | 146 | 27 | 130 | 5.67e-13 | 66.6 |
| MS.gene79758.t1 | AT2G30590 | 39.785 | 93 | 50 | 3 | 60 | 149 | 286 | 375 | 1.42e-12 | 66.2 |
| MS.gene79758.t1 | AT4G01250 | 44.737 | 76 | 34 | 2 | 62 | 137 | 108 | 175 | 2.07e-12 | 65.5 |
| MS.gene79758.t1 | AT5G52830 | 40.909 | 88 | 36 | 3 | 62 | 149 | 144 | 215 | 5.70e-12 | 64.7 |
| MS.gene79758.t1 | AT5G28650 | 42.045 | 88 | 45 | 3 | 60 | 144 | 235 | 319 | 7.79e-12 | 63.9 |
| MS.gene79758.t1 | AT1G29280 | 35.238 | 105 | 57 | 3 | 32 | 136 | 27 | 120 | 9.91e-12 | 63.2 |
| MS.gene79758.t1 | AT4G23550 | 37.500 | 80 | 48 | 1 | 54 | 133 | 106 | 183 | 1.04e-11 | 63.5 |
| MS.gene79758.t1 | AT3G04670 | 46.154 | 78 | 38 | 3 | 60 | 136 | 235 | 309 | 1.13e-11 | 63.5 |
| MS.gene79758.t1 | AT2G34830 | 38.393 | 112 | 55 | 4 | 34 | 133 | 149 | 258 | 1.44e-11 | 63.5 |
| MS.gene79758.t1 | AT2G34830 | 38.393 | 112 | 55 | 4 | 34 | 133 | 158 | 267 | 1.53e-11 | 63.5 |
| MS.gene79758.t1 | AT4G31550 | 33.913 | 115 | 72 | 3 | 50 | 163 | 209 | 320 | 2.27e-11 | 62.8 |
| MS.gene79758.t1 | AT2G37260 | 40.789 | 76 | 41 | 2 | 62 | 137 | 324 | 395 | 2.66e-11 | 62.8 |
| MS.gene79758.t1 | AT2G37260 | 39.189 | 74 | 42 | 1 | 64 | 137 | 243 | 313 | 2.82e-11 | 62.4 |
| MS.gene79758.t1 | AT1G69310 | 35.955 | 89 | 49 | 2 | 48 | 136 | 112 | 192 | 2.88e-11 | 62.0 |
| MS.gene79758.t1 | AT1G69310 | 35.955 | 89 | 49 | 2 | 48 | 136 | 112 | 192 | 2.88e-11 | 62.0 |
| MS.gene79758.t1 | AT1G69310 | 35.955 | 89 | 49 | 2 | 48 | 136 | 112 | 192 | 2.88e-11 | 62.0 |
| MS.gene79758.t1 | AT2G37260 | 39.189 | 74 | 42 | 1 | 64 | 137 | 245 | 315 | 2.94e-11 | 62.4 |
| MS.gene79758.t1 | AT4G31550 | 36.275 | 102 | 61 | 3 | 63 | 163 | 221 | 319 | 5.14e-11 | 61.6 |
| MS.gene79758.t1 | AT4G18170 | 41.772 | 79 | 42 | 2 | 59 | 136 | 142 | 217 | 5.16e-11 | 61.6 |
| MS.gene79758.t1 | AT4G01720 | 38.235 | 102 | 58 | 3 | 45 | 144 | 195 | 293 | 5.17e-11 | 62.0 |
| MS.gene79758.t1 | AT2G24570 | 33.962 | 106 | 66 | 3 | 60 | 164 | 216 | 318 | 7.16e-11 | 61.2 |
Find 42 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAATTGGCAATAGAATT+TGG | 0.146953 | 8.4:+68269523 | None:intergenic |
| CTGCTTGTCACTATTGGATA+TGG | 0.238656 | 8.4:-68269590 | MS.gene79758:CDS |
| TGAGTCTTGGACCTCACTTT+TGG | 0.250506 | 8.4:+68271731 | None:intergenic |
| ATCAAAATCCATTGGAGAAT+TGG | 0.264515 | 8.4:+68269510 | None:intergenic |
| CATGATTGAAAACAATTTCA+TGG | 0.311292 | 8.4:-68269653 | MS.gene79758:CDS |
| GAGCAAGTGAAGGTTTATTC+TGG | 0.340277 | 8.4:-68271511 | MS.gene79758:CDS |
| GAGAATTGGCAATAGAATTT+GGG | 0.349284 | 8.4:+68269524 | None:intergenic |
| AACATTAAGTGTGAAGAAAT+TGG | 0.349506 | 8.4:-68272008 | MS.gene79758:CDS |
| AGTGAGACTGAGATAATTTC+AGG | 0.355518 | 8.4:-68269547 | MS.gene79758:CDS |
| TATGGACAAAAGGATATTCT+TGG | 0.372931 | 8.4:-68271442 | MS.gene79758:CDS |
| GGTTATAGCTGGAGAAAGTA+TGG | 0.376671 | 8.4:-68271460 | MS.gene79758:CDS |
| ATGAATTCTCATTGTTCAAA+TGG | 0.381161 | 8.4:-68271759 | MS.gene79758:CDS |
| TGTGCTTGAACTTTGAGTCT+TGG | 0.395293 | 8.4:+68271718 | None:intergenic |
| CTGGAGAAAGTATGGACAAA+AGG | 0.452781 | 8.4:-68271452 | MS.gene79758:CDS |
| AAACAATTTCATGGAAAATG+AGG | 0.464755 | 8.4:-68269644 | MS.gene79758:CDS |
| TCCCTCATTACCCTTTGCCA+TGG | 0.480628 | 8.4:+68271809 | None:intergenic |
| TGTGAAGAAATTGGTCTCAT+TGG | 0.485916 | 8.4:-68271999 | MS.gene79758:CDS |
| AACCATGGCAAAGGGTAATG+AGG | 0.498135 | 8.4:-68271811 | MS.gene79758:CDS |
| GAAATTATCTCAGTCTCACT+TGG | 0.500825 | 8.4:+68269550 | None:intergenic |
| TTCTATTGCCAATTCTCCAA+TGG | 0.506962 | 8.4:-68269518 | MS.gene79758:CDS |
| ACAAACATGTGTCCAAGAAA+AGG | 0.507877 | 8.4:-68271698 | MS.gene79758:intron |
| CTGTTGAGGATGGTTATAGC+TGG | 0.522098 | 8.4:-68271471 | MS.gene79758:CDS |
| TTCTTGGAGCTAAGTTTCCA+AGG | 0.535081 | 8.4:-68271426 | MS.gene79758:intron |
| TTCACTTGCTCTGTCCACTT+AGG | 0.560248 | 8.4:+68271523 | None:intergenic |
| TTATAGAGATCAAAATCCAT+TGG | 0.564884 | 8.4:+68269502 | None:intergenic |
| GATATGGACAGCACTGGACT+AGG | 0.571491 | 8.4:-68269574 | MS.gene79758:CDS |
| GACAGCAATAACCATGGCAA+AGG | 0.573478 | 8.4:-68271820 | MS.gene79758:intron |
| ACAGCAATAACCATGGCAAA+GGG | 0.573968 | 8.4:-68271819 | MS.gene79758:intron |
| TATTCTGGAACAGCAGCTGA+AGG | 0.574098 | 8.4:-68271496 | MS.gene79758:CDS |
| ACCATGGCAAAGGGTAATGA+GGG | 0.583479 | 8.4:-68271810 | MS.gene79758:CDS |
| TTGCTCTGTCCACTTAGGCA+CGG | 0.602998 | 8.4:+68271528 | None:intergenic |
| GCTGAAGGATCTGTTGAGGA+TGG | 0.616817 | 8.4:-68271481 | MS.gene79758:CDS |
| CTATTGGATATGGACAGCAC+TGG | 0.619978 | 8.4:-68269580 | MS.gene79758:CDS |
| AGCAGCTGAAGGATCTGTTG+AGG | 0.621900 | 8.4:-68271485 | MS.gene79758:CDS |
| AAATTATCTCAGTCTCACTT+GGG | 0.640870 | 8.4:+68269551 | None:intergenic |
| AAATGGAAGTCCCAAAAGTG+AGG | 0.645726 | 8.4:-68271742 | MS.gene79758:CDS |
| TAATGACATAAATTTCGACA+TGG | 0.657601 | 8.4:-68269482 | MS.gene79758:CDS |
| TAAGTGGACAGAGCAAGTGA+AGG | 0.673359 | 8.4:-68271521 | MS.gene79758:CDS |
| TGATTTCTCTATCAACACAC+AGG | 0.687064 | 8.4:-68269458 | MS.gene79758:CDS |
| CTCATTGGTGAACTAATGCA+AGG | 0.698867 | 8.4:-68271984 | MS.gene79758:intron |
| CATTGAGACAGCAATAACCA+TGG | 0.699108 | 8.4:-68271826 | MS.gene79758:intron |
| TGCACACATAGACATGCACA+AGG | 0.724252 | 8.4:-68269976 | MS.gene79758:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATATTAAAATTTTTTG+TGG | + | chr8.4:68271341-68271360 | None:intergenic | 10.0% |
| !!! | TAGGTTTTTATTTATTATAT+AGG | - | chr8.4:68270387-68270406 | MS.gene79758:intron | 10.0% |
| !! | AAAAATAAAAAATTGTCCTT+TGG | + | chr8.4:68270574-68270593 | None:intergenic | 15.0% |
| !! | AAAAATACTATATCAGATAA+TGG | - | chr8.4:68270509-68270528 | MS.gene79758:intron | 15.0% |
| !! | AAAATACTATATCAGATAAT+GGG | - | chr8.4:68270510-68270529 | MS.gene79758:intron | 15.0% |
| !! | AAATTAGAAAGATTTAATTC+TGG | - | chr8.4:68270616-68270635 | MS.gene79758:intron | 15.0% |
| !! | AATATAAATTCACACAATTA+TGG | - | chr8.4:68270868-68270887 | MS.gene79758:intron | 15.0% |
| !! | ATTGTGTGAATTTATATTAA+TGG | + | chr8.4:68270866-68270885 | None:intergenic | 15.0% |
| !! | TATTTAATGCTAACTTAAAT+TGG | + | chr8.4:68270756-68270775 | None:intergenic | 15.0% |
| !!! | AAGTTTTATTTGTTCTATTT+AGG | - | chr8.4:68270368-68270387 | MS.gene79758:intron | 15.0% |
| !!! | ATATAGGAATTTTTTTTGAT+TGG | - | chr8.4:68270403-68270422 | MS.gene79758:intron | 15.0% |
| !!! | TCATAATTTTCATTATTCTT+TGG | - | chr8.4:68269890-68269909 | MS.gene79758:intron | 15.0% |
| !!! | TTTTTTTTTTAAGAATCCAA+AGG | - | chr8.4:68270590-68270609 | MS.gene79758:intron | 15.0% |
| !! | AATCTGACAATTTAAACTAA+TGG | + | chr8.4:68270896-68270915 | None:intergenic | 20.0% |
| !! | AATGAATAACAAAACTCTTA+CGG | + | chr8.4:68270150-68270169 | None:intergenic | 20.0% |
| !! | ATAGAAACTTTAGATTTCAA+TGG | - | chr8.4:68271058-68271077 | MS.gene79758:intron | 20.0% |
| !! | CATTGGAAAAATTTAACAAT+TGG | - | chr8.4:68270696-68270715 | MS.gene79758:intron | 20.0% |
| !!! | AAGAGTTTTGTTATTCATTA+TGG | - | chr8.4:68270151-68270170 | MS.gene79758:intron | 20.0% |
| !!! | AATTTAATTACTTTTGCTTG+AGG | - | chr8.4:68270244-68270263 | MS.gene79758:intron | 20.0% |
| !!! | GTAATTTTGTCAAATTTACT+AGG | + | chr8.4:68270128-68270147 | None:intergenic | 20.0% |
| !!! | TTCAAGGTTCATTTTTTTAT+AGG | - | chr8.4:68269840-68269859 | MS.gene79758:intron | 20.0% |
| !!! | TTTAGACATTATTGGTTAAT+TGG | + | chr8.4:68270471-68270490 | None:intergenic | 20.0% |
| ! | AAACAATTTCATGGAAAATG+AGG | - | chr8.4:68271817-68271836 | MS.gene79758:CDS | 25.0% |
| ! | AACATTAAGTGTGAAGAAAT+TGG | - | chr8.4:68269453-68269472 | MS.gene79758:CDS | 25.0% |
| ! | AATTATGGAACATATCAAGT+AGG | + | chr8.4:68271165-68271184 | None:intergenic | 25.0% |
| ! | ACCAATAATGTCTAAAAAAG+AGG | - | chr8.4:68270475-68270494 | MS.gene79758:intron | 25.0% |
| ! | AGGAATTTAAAGATGCATTA+TGG | + | chr8.4:68270108-68270127 | None:intergenic | 25.0% |
| ! | ATCAACAGAATATTCGTTAT+GGG | + | chr8.4:68270212-68270231 | None:intergenic | 25.0% |
| ! | ATGAATTCTCATTGTTCAAA+TGG | - | chr8.4:68269702-68269721 | MS.gene79758:intron | 25.0% |
| ! | ATTATGGAACATATCAAGTA+GGG | + | chr8.4:68271164-68271183 | None:intergenic | 25.0% |
| ! | CAAAATAACCTTAGATTCTA+TGG | + | chr8.4:68271383-68271402 | None:intergenic | 25.0% |
| ! | CATGATTGAAAACAATTTCA+TGG | - | chr8.4:68271808-68271827 | MS.gene79758:CDS | 25.0% |
| ! | CCAATAATGTCTAAAAAAGA+GGG | - | chr8.4:68270476-68270495 | MS.gene79758:intron | 25.0% |
| ! | GTAAAAAATGATTGTTACCT+TGG | + | chr8.4:68270055-68270074 | None:intergenic | 25.0% |
| ! | GTGAATCACAAATTTAATTC+AGG | + | chr8.4:68271033-68271052 | None:intergenic | 25.0% |
| ! | TAATGACATAAATTTCGACA+TGG | - | chr8.4:68271979-68271998 | MS.gene79758:intron | 25.0% |
| ! | TAATTTCTCTCTTGACAATA+AGG | - | chr8.4:68271706-68271725 | MS.gene79758:CDS | 25.0% |
| ! | TAGAAAGATTTAATTCTGGT+AGG | - | chr8.4:68270620-68270639 | MS.gene79758:intron | 25.0% |
| ! | TATATATTAATCTCCTGAGT+CGG | + | chr8.4:68270183-68270202 | None:intergenic | 25.0% |
| ! | TATCAACAGAATATTCGTTA+TGG | + | chr8.4:68270213-68270232 | None:intergenic | 25.0% |
| ! | TCAAAAACAAAGTTGAGATT+TGG | - | chr8.4:68271614-68271633 | MS.gene79758:intron | 25.0% |
| ! | TTATAGAGATCAAAATCCAT+TGG | + | chr8.4:68271962-68271981 | None:intergenic | 25.0% |
| !! | AAAAAAAGTTATTTGCTGCA+TGG | + | chr8.4:68270283-68270302 | None:intergenic | 25.0% |
| !! | AAAAAAGTTATTTGCTGCAT+GGG | + | chr8.4:68270282-68270301 | None:intergenic | 25.0% |
| !! | AGAGAGAAATTATTTTCTAG+AGG | + | chr8.4:68271698-68271717 | None:intergenic | 25.0% |
| !! | ATCTTTCTAATTTTGTCCTT+TGG | + | chr8.4:68270609-68270628 | None:intergenic | 25.0% |
| !! | CATGAAATTGTTTTCAATCA+TGG | + | chr8.4:68271810-68271829 | None:intergenic | 25.0% |
| !! | GTACTAATGTGTTATTACTT+AGG | - | chr8.4:68270644-68270663 | MS.gene79758:intron | 25.0% |
| !! | TAATCCAATATACCTTTTCT+TGG | + | chr8.4:68269778-68269797 | None:intergenic | 25.0% |
| !! | TTATTGTTTCCTTTTGAACT+TGG | - | chr8.4:68269808-68269827 | MS.gene79758:intron | 25.0% |
| !!! | AATCTCAACTTTGTTTTTGA+TGG | + | chr8.4:68271614-68271633 | None:intergenic | 25.0% |
| !!! | ATAACCTACATTTTGACTTT+AGG | + | chr8.4:68270958-68270977 | None:intergenic | 25.0% |
| !!! | ATAGGAATTTTTTTTTCCCA+AGG | - | chr8.4:68269858-68269877 | MS.gene79758:intron | 25.0% |
| !!! | ATCTCAACTTTGTTTTTGAT+GGG | + | chr8.4:68271613-68271632 | None:intergenic | 25.0% |
| !!! | CATTATTCTTTGGAATTTTG+TGG | - | chr8.4:68269900-68269919 | MS.gene79758:intron | 25.0% |
| !!! | GCATATCATCTTCTTTTTTA+AGG | + | chr8.4:68271011-68271030 | None:intergenic | 25.0% |
| !!! | TCTTCTTTTTTAAGGAAATC+AGG | + | chr8.4:68271003-68271022 | None:intergenic | 25.0% |
| AAATTATCTCAGTCTCACTT+GGG | + | chr8.4:68271913-68271932 | None:intergenic | 30.0% | |
| AACTTAAATTGGTGCATGAA+TGG | + | chr8.4:68270745-68270764 | None:intergenic | 30.0% | |
| AAGTTATAAAGTTTGTCGCT+TGG | - | chr8.4:68270330-68270349 | MS.gene79758:intron | 30.0% | |
| AGACGATAAAAGTTATCCAA+AGG | - | chr8.4:68270555-68270574 | MS.gene79758:intron | 30.0% | |
| ATAATGTCTAAAAAAGAGGG+AGG | - | chr8.4:68270479-68270498 | MS.gene79758:intron | 30.0% | |
| ATATGTGAGATAACCTACAA+AGG | - | chr8.4:68271554-68271573 | MS.gene79758:intron | 30.0% | |
| ATCAAAATCCATTGGAGAAT+TGG | + | chr8.4:68271954-68271973 | None:intergenic | 30.0% | |
| CTAACCTAAAGTCAAAATGT+AGG | - | chr8.4:68270951-68270970 | MS.gene79758:intron | 30.0% | |
| GAGAATTGGCAATAGAATTT+GGG | + | chr8.4:68271940-68271959 | None:intergenic | 30.0% | |
| GTGTACTATTGACACAATTA+TGG | - | chr8.4:68270838-68270857 | MS.gene79758:intron | 30.0% | |
| GTTGTCTATAACAGTGAATT+TGG | + | chr8.4:68270800-68270819 | None:intergenic | 30.0% | |
| TAATGTCTAAAAAAGAGGGA+GGG | - | chr8.4:68270480-68270499 | MS.gene79758:intron | 30.0% | |
| TAATTTGAAGACAATCCATC+TGG | - | chr8.4:68271180-68271199 | MS.gene79758:intron | 30.0% | |
| TACTAAAAGAGAAAGGACAT+TGG | - | chr8.4:68270679-68270698 | MS.gene79758:intron | 30.0% | |
| TATGGACAAAAGGATATTCT+TGG | - | chr8.4:68270019-68270038 | MS.gene79758:intron | 30.0% | |
| TCAATGGAGATTTCAAATAG+AGG | - | chr8.4:68271074-68271093 | MS.gene79758:intron | 30.0% | |
| TTGTTTGTGGTCGAATAATT+AGG | - | chr8.4:68271205-68271224 | MS.gene79758:intron | 30.0% | |
| ! | AAAAAGTTATTTGCTGCATG+GGG | + | chr8.4:68270281-68270300 | None:intergenic | 30.0% |
| ! | AATTTTTCCTCTCCATCAAT+AGG | - | chr8.4:68271749-68271768 | MS.gene79758:CDS | 30.0% |
| ! | ATTTTTCCTCTCCATCAATA+GGG | - | chr8.4:68271750-68271769 | MS.gene79758:CDS | 30.0% |
| ! | TGGTTGTATTTTCTCTTCTT+GGG | + | chr8.4:68271675-68271694 | None:intergenic | 30.0% |
| !! | ACTATATCAGATAATGGGAA+AGG | - | chr8.4:68270515-68270534 | MS.gene79758:intron | 30.0% |
| !! | GAGAAATTATTTTCTAGAGG+TGG | + | chr8.4:68271695-68271714 | None:intergenic | 30.0% |
| !! | GATGGATTGTCTTCAAATTA+TGG | + | chr8.4:68271180-68271199 | None:intergenic | 30.0% |
| !!! | CAATGATATTTTAGTGAGTG+GGG | + | chr8.4:68270447-68270466 | None:intergenic | 30.0% |
| !!! | CCAATGATATTTTAGTGAGT+GGG | + | chr8.4:68270448-68270467 | None:intergenic | 30.0% |
| !!! | CCCTCTTTTTTAGACATTAT+TGG | + | chr8.4:68270479-68270498 | None:intergenic | 30.0% |
| !!! | TTGGGGTTGAATATTTTGAT+TGG | + | chr8.4:68271657-68271676 | None:intergenic | 30.0% |
| !!! | TTTTTTTTGATTGGTGCAAG+TGG | - | chr8.4:68270412-68270431 | MS.gene79758:intron | 30.0% |
| AATTATGAGATCGTGAACCT+TGG | + | chr8.4:68269878-68269897 | None:intergenic | 35.0% | |
| AATTCACCACCAAGTTCAAA+AGG | + | chr8.4:68269820-68269839 | None:intergenic | 35.0% | |
| ACAAACATGTGTCCAAGAAA+AGG | - | chr8.4:68269763-68269782 | MS.gene79758:intron | 35.0% | |
| AGTGAGACTGAGATAATTTC+AGG | - | chr8.4:68271914-68271933 | MS.gene79758:intron | 35.0% | |
| ATGGGAGTTTCTTGTTAGAT+TGG | + | chr8.4:68271595-68271614 | None:intergenic | 35.0% | |
| ATTATGAGATCGTGAACCTT+GGG | + | chr8.4:68269877-68269896 | None:intergenic | 35.0% | |
| ATTATGGTATTATCCGACTC+AGG | - | chr8.4:68270167-68270186 | MS.gene79758:intron | 35.0% | |
| CCCACTCACTAAAATATCAT+TGG | - | chr8.4:68270445-68270464 | MS.gene79758:intron | 35.0% | |
| CTACATGACCATAGAATCTA+AGG | - | chr8.4:68271372-68271391 | MS.gene79758:intron | 35.0% | |
| CTTAGATTCTATGGTCATGT+AGG | + | chr8.4:68271374-68271393 | None:intergenic | 35.0% | |
| GAAATTATCTCAGTCTCACT+TGG | + | chr8.4:68271914-68271933 | None:intergenic | 35.0% | |
| GGAGAATTGGCAATAGAATT+TGG | + | chr8.4:68271941-68271960 | None:intergenic | 35.0% | |
| GTCAATTAAGACTTCATGTG+AGG | + | chr8.4:68269601-68269620 | None:intergenic | 35.0% | |
| TGATTTCTCTATCAACACAC+AGG | - | chr8.4:68272003-68272022 | MS.gene79758:CDS | 35.0% | |
| TGCACTGTACTAAAAGAGAA+AGG | - | chr8.4:68270672-68270691 | MS.gene79758:intron | 35.0% | |
| TGGGAGTTTCTTGTTAGATT+GGG | + | chr8.4:68271594-68271613 | None:intergenic | 35.0% | |
| TTCTATTGCCAATTCTCCAA+TGG | - | chr8.4:68271943-68271962 | MS.gene79758:intron | 35.0% | |
| TTTCTCTCTTGACAATAAGG+AGG | - | chr8.4:68271709-68271728 | MS.gene79758:CDS | 35.0% | |
| ! | AATCCATCTGGATTTGTTTG+TGG | - | chr8.4:68271192-68271211 | MS.gene79758:intron | 35.0% |
| ! | AATTGTGATTTGCAATGCAG+AGG | - | chr8.4:68271452-68271471 | MS.gene79758:CDS | 35.0% |
| ! | CATTTTCTGCTTGTCACTAT+TGG | - | chr8.4:68271865-68271884 | MS.gene79758:intron | 35.0% |
| ! | GGTTGTATTTTCTCTTCTTG+GGG | + | chr8.4:68271674-68271693 | None:intergenic | 35.0% |
| ! | GTGGTTGTATTTTCTCTTCT+TGG | + | chr8.4:68271676-68271695 | None:intergenic | 35.0% |
| ! | GTGTCCAAGAAAAGGTATAT+TGG | - | chr8.4:68269771-68269790 | MS.gene79758:intron | 35.0% |
| ! | TCATTTTCAGACCCTATTGA+TGG | + | chr8.4:68271764-68271783 | None:intergenic | 35.0% |
| ! | TGTGAAGAAATTGGTCTCAT+TGG | - | chr8.4:68269462-68269481 | MS.gene79758:CDS | 35.0% |
| ! | TTCTCTTTTAGTACAGTGCA+CGG | + | chr8.4:68270672-68270691 | None:intergenic | 35.0% |
| ! | TTGTTTCCTTTTGAACTTGG+TGG | - | chr8.4:68269811-68269830 | MS.gene79758:intron | 35.0% |
| !! | GATGATGTTGATGATGATGA+TGG | + | chr8.4:68269552-68269571 | None:intergenic | 35.0% |
| !! | GTGATGATGGAGAGAAAATT+TGG | + | chr8.4:68269530-68269549 | None:intergenic | 35.0% |
| !!! | AACTTGGTGGTGAATTTTCA+AGG | - | chr8.4:68269824-68269843 | MS.gene79758:intron | 35.0% |
| !!! | GCCAATGATATTTTAGTGAG+TGG | + | chr8.4:68270449-68270468 | None:intergenic | 35.0% |
| AAACTACCAACTGAAGTGCA+GGG | - | chr8.4:68271306-68271325 | MS.gene79758:intron | 40.0% | |
| AAATGGAAGTCCCAAAAGTG+AGG | - | chr8.4:68269719-68269738 | MS.gene79758:intron | 40.0% | |
| ACAGCAATAACCATGGCAAA+GGG | - | chr8.4:68269642-68269661 | MS.gene79758:CDS | 40.0% | |
| AGACTCACACACTATAAGTG+TGG | - | chr8.4:68271230-68271249 | MS.gene79758:intron | 40.0% | |
| CATGGTTATTGCTGTCTCAA+TGG | + | chr8.4:68269637-68269656 | None:intergenic | 40.0% | |
| CATTGAGACAGCAATAACCA+TGG | - | chr8.4:68269635-68269654 | MS.gene79758:CDS | 40.0% | |
| CTCATTGGTGAACTAATGCA+AGG | - | chr8.4:68269477-68269496 | MS.gene79758:CDS | 40.0% | |
| CTGCTTGTCACTATTGGATA+TGG | - | chr8.4:68271871-68271890 | MS.gene79758:intron | 40.0% | |
| GAGCAAGTGAAGGTTTATTC+TGG | - | chr8.4:68269950-68269969 | MS.gene79758:CDS | 40.0% | |
| GGTTATAGCTGGAGAAAGTA+TGG | - | chr8.4:68270001-68270020 | MS.gene79758:intron | 40.0% | |
| GTGTGGAGAAGTAAGAAATC+CGG | - | chr8.4:68271247-68271266 | MS.gene79758:intron | 40.0% | |
| TGTGCTTGAACTTTGAGTCT+TGG | + | chr8.4:68269746-68269765 | None:intergenic | 40.0% | |
| TGTGGAGAAGTAAGAAATCC+GGG | - | chr8.4:68271248-68271267 | MS.gene79758:intron | 40.0% | |
| TTCATGGACACAGAAATGCA+GGG | + | chr8.4:68271288-68271307 | None:intergenic | 40.0% | |
| TTCTTGGAGCTAAGTTTCCA+AGG | - | chr8.4:68270035-68270054 | MS.gene79758:intron | 40.0% | |
| TTTCATGGACACAGAAATGC+AGG | + | chr8.4:68271289-68271308 | None:intergenic | 40.0% | |
| ! | CTGGAGAAAGTATGGACAAA+AGG | - | chr8.4:68270009-68270028 | MS.gene79758:intron | 40.0% |
| !! | CACTTCAGTTGGTAGTTTCA+TGG | + | chr8.4:68271304-68271323 | None:intergenic | 40.0% |
| !! | GATGATGATGATGGTGATGA+TGG | + | chr8.4:68269543-68269562 | None:intergenic | 40.0% |
| AACCATGGCAAAGGGTAATG+AGG | - | chr8.4:68269650-68269669 | MS.gene79758:CDS | 45.0% | |
| ACCATGGCAAAGGGTAATGA+GGG | - | chr8.4:68269651-68269670 | MS.gene79758:CDS | 45.0% | |
| CGACCACAAACAAATCCAGA+TGG | + | chr8.4:68271198-68271217 | None:intergenic | 45.0% | |
| CTATTGGATATGGACAGCAC+TGG | - | chr8.4:68271881-68271900 | MS.gene79758:intron | 45.0% | |
| CTGTTGAGGATGGTTATAGC+TGG | - | chr8.4:68269990-68270009 | MS.gene79758:CDS | 45.0% | |
| GAAACTACCAACTGAAGTGC+AGG | - | chr8.4:68271305-68271324 | MS.gene79758:intron | 45.0% | |
| GACAGCAATAACCATGGCAA+AGG | - | chr8.4:68269641-68269660 | MS.gene79758:CDS | 45.0% | |
| GCATGTGTGTCTTCCTTTGT+AGG | + | chr8.4:68271570-68271589 | None:intergenic | 45.0% | |
| GTGGAGAAGTAAGAAATCCG+GGG | - | chr8.4:68271249-68271268 | MS.gene79758:intron | 45.0% | |
| TAAGTGGACAGAGCAAGTGA+AGG | - | chr8.4:68269940-68269959 | MS.gene79758:CDS | 45.0% | |
| TCATGGACACAGAAATGCAG+GGG | + | chr8.4:68271287-68271306 | None:intergenic | 45.0% | |
| TGATTGGTGCAAGTGGCTTT+GGG | - | chr8.4:68270419-68270438 | MS.gene79758:intron | 45.0% | |
| TGCACACATAGACATGCACA+AGG | - | chr8.4:68271485-68271504 | MS.gene79758:CDS | 45.0% | |
| TTCACTTGCTCTGTCCACTT+AGG | + | chr8.4:68269941-68269960 | None:intergenic | 45.0% | |
| TTCAGACCCTATTGATGGAG+AGG | + | chr8.4:68271759-68271778 | None:intergenic | 45.0% | |
| TTGATTGGTGCAAGTGGCTT+TGG | - | chr8.4:68270418-68270437 | MS.gene79758:intron | 45.0% | |
| ! | TGAGTCTTGGACCTCACTTT+TGG | + | chr8.4:68269733-68269752 | None:intergenic | 45.0% |
| !! | GAGTCTTGGACCTCACTTTT+GGG | + | chr8.4:68269732-68269751 | None:intergenic | 45.0% |
| !! | TATTCTGGAACAGCAGCTGA+AGG | - | chr8.4:68269965-68269984 | MS.gene79758:CDS | 45.0% |
| AGCAGCTGAAGGATCTGTTG+AGG | - | chr8.4:68269976-68269995 | MS.gene79758:CDS | 50.0% | |
| GCAGAAAAACCGTGCCTAAG+TGG | - | chr8.4:68269924-68269943 | MS.gene79758:intron | 50.0% | |
| GCTGAAGGATCTGTTGAGGA+TGG | - | chr8.4:68269980-68269999 | MS.gene79758:CDS | 50.0% | |
| TCCCTCATTACCCTTTGCCA+TGG | + | chr8.4:68269655-68269674 | None:intergenic | 50.0% | |
| TGATAGCCCTGCACTTCAGT+TGG | + | chr8.4:68271315-68271334 | None:intergenic | 50.0% | |
| TTGCTCTGTCCACTTAGGCA+CGG | + | chr8.4:68269936-68269955 | None:intergenic | 50.0% | |
| ! | GATATGGACAGCACTGGACT+AGG | - | chr8.4:68271887-68271906 | MS.gene79758:intron | 50.0% |
| AGGGGTCGGAATTCAAACCC+CGG | + | chr8.4:68271269-68271288 | None:intergenic | 55.0% | |
| GGACACAGAAATGCAGGGGT+CGG | + | chr8.4:68271283-68271302 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68269444 | 68272039 | 68269444 | ID=MS.gene79758 |
| chr8.4 | mRNA | 68269444 | 68272039 | 68269444 | ID=MS.gene79758.t1;Parent=MS.gene79758 |
| chr8.4 | exon | 68271985 | 68272039 | 68271985 | ID=MS.gene79758.t1.exon1;Parent=MS.gene79758.t1 |
| chr8.4 | CDS | 68271985 | 68272039 | 68271985 | ID=cds.MS.gene79758.t1;Parent=MS.gene79758.t1 |
| chr8.4 | exon | 68271699 | 68271837 | 68271699 | ID=MS.gene79758.t1.exon2;Parent=MS.gene79758.t1 |
| chr8.4 | CDS | 68271699 | 68271837 | 68271699 | ID=cds.MS.gene79758.t1;Parent=MS.gene79758.t1 |
| chr8.4 | exon | 68271427 | 68271555 | 68271427 | ID=MS.gene79758.t1.exon3;Parent=MS.gene79758.t1 |
| chr8.4 | CDS | 68271427 | 68271555 | 68271427 | ID=cds.MS.gene79758.t1;Parent=MS.gene79758.t1 |
| chr8.4 | exon | 68269926 | 68270011 | 68269926 | ID=MS.gene79758.t1.exon4;Parent=MS.gene79758.t1 |
| chr8.4 | CDS | 68269926 | 68270011 | 68269926 | ID=cds.MS.gene79758.t1;Parent=MS.gene79758.t1 |
| chr8.4 | exon | 68269444 | 68269712 | 68269444 | ID=MS.gene79758.t1.exon5;Parent=MS.gene79758.t1 |
| chr8.4 | CDS | 68269444 | 68269712 | 68269444 | ID=cds.MS.gene79758.t1;Parent=MS.gene79758.t1 |
| Gene Sequence |
| Protein sequence |
