Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80994.t1 | GAU16518.1 | 97.1 | 490 | 14 | 0 | 1 | 490 | 46 | 535 | 6.70E-272 | 946 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80994.t1 | Q9M888 | 89.7 | 476 | 49 | 0 | 15 | 490 | 60 | 535 | 2.9e-247 | 855.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80994.t1 | A0A072TVM3 | 99.0 | 481 | 5 | 0 | 10 | 490 | 55 | 535 | 2.7e-270 | 940.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene80994 | 0.839847 | 1.24E-57 | -1.69E-46 |
| MS.gene051984 | MS.gene80994 | 0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene052209 | MS.gene80994 | 0.806881 | 6.63E-50 | -1.69E-46 |
| MS.gene052664 | MS.gene80994 | 0.843563 | 1.30E-58 | -1.69E-46 |
| MS.gene05640 | MS.gene80994 | 0.815129 | 1.08E-51 | -1.69E-46 |
| MS.gene057251 | MS.gene80994 | -0.815449 | 9.19E-52 | -1.69E-46 |
| MS.gene057367 | MS.gene80994 | 0.808348 | 3.24E-50 | -1.69E-46 |
| MS.gene057643 | MS.gene80994 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene057669 | MS.gene80994 | 0.820953 | 5.22E-53 | -1.69E-46 |
| MS.gene058128 | MS.gene80994 | 0.814456 | 1.53E-51 | -1.69E-46 |
| MS.gene058827 | MS.gene80994 | 0.843132 | 1.69E-58 | -1.69E-46 |
| MS.gene058828 | MS.gene80994 | 0.84251 | 2.47E-58 | -1.69E-46 |
| MS.gene058853 | MS.gene80994 | 0.844449 | 7.51E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51241 | gene | 4513 | 12363 | 4513 | ID=MS.gene80994 |
| 51241 | mRNA | 4513 | 12363 | 4513 | ID=MS.gene80994.t1;Parent=MS.gene80994 |
| 51241 | exon | 4513 | 4576 | 4513 | ID=MS.gene80994.t1.exon1;Parent=MS.gene80994.t1 |
| 51241 | CDS | 4513 | 4576 | 4513 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 6294 | 6429 | 6294 | ID=MS.gene80994.t1.exon2;Parent=MS.gene80994.t1 |
| 51241 | CDS | 6294 | 6429 | 6294 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 7049 | 7200 | 7049 | ID=MS.gene80994.t1.exon3;Parent=MS.gene80994.t1 |
| 51241 | CDS | 7049 | 7200 | 7049 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 7324 | 7371 | 7324 | ID=MS.gene80994.t1.exon4;Parent=MS.gene80994.t1 |
| 51241 | CDS | 7324 | 7371 | 7324 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 7508 | 7600 | 7508 | ID=MS.gene80994.t1.exon5;Parent=MS.gene80994.t1 |
| 51241 | CDS | 7508 | 7600 | 7508 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 7691 | 7797 | 7691 | ID=MS.gene80994.t1.exon6;Parent=MS.gene80994.t1 |
| 51241 | CDS | 7691 | 7797 | 7691 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 8461 | 8575 | 8461 | ID=MS.gene80994.t1.exon7;Parent=MS.gene80994.t1 |
| 51241 | CDS | 8461 | 8575 | 8461 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 8707 | 8793 | 8707 | ID=MS.gene80994.t1.exon8;Parent=MS.gene80994.t1 |
| 51241 | CDS | 8707 | 8793 | 8707 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 9042 | 9246 | 9042 | ID=MS.gene80994.t1.exon9;Parent=MS.gene80994.t1 |
| 51241 | CDS | 9042 | 9246 | 9042 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 9407 | 9501 | 9407 | ID=MS.gene80994.t1.exon10;Parent=MS.gene80994.t1 |
| 51241 | CDS | 9407 | 9501 | 9407 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 11190 | 11258 | 11190 | ID=MS.gene80994.t1.exon11;Parent=MS.gene80994.t1 |
| 51241 | CDS | 11190 | 11258 | 11190 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 11348 | 11455 | 11348 | ID=MS.gene80994.t1.exon12;Parent=MS.gene80994.t1 |
| 51241 | CDS | 11348 | 11455 | 11348 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 11572 | 11690 | 11572 | ID=MS.gene80994.t1.exon13;Parent=MS.gene80994.t1 |
| 51241 | CDS | 11572 | 11690 | 11572 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| 51241 | exon | 12288 | 12363 | 12288 | ID=MS.gene80994.t1.exon14;Parent=MS.gene80994.t1 |
| 51241 | CDS | 12288 | 12363 | 12288 | ID=cds.MS.gene80994.t1;Parent=MS.gene80994.t1 |
| Gene Sequence |
| Protein sequence |
