Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81272.t1 | XP_003617898.1 | 93.3 | 330 | 20 | 1 | 1 | 328 | 1 | 330 | 5.70E-174 | 620.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81272.t1 | Q680K8 | 56.4 | 328 | 141 | 2 | 1 | 327 | 1 | 327 | 1.3e-105 | 384.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81272.t1 | G7K4T7 | 93.3 | 330 | 20 | 1 | 1 | 328 | 1 | 330 | 4.1e-174 | 620.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81272.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene81272 | 0.801174 | 1.02E-48 | -1.69E-46 |
| MS.gene050271 | MS.gene81272 | 0.809652 | 1.70E-50 | -1.69E-46 |
| MS.gene050312 | MS.gene81272 | 0.809899 | 1.51E-50 | -1.69E-46 |
| MS.gene052500 | MS.gene81272 | 0.816814 | 4.55E-52 | -1.69E-46 |
| MS.gene052502 | MS.gene81272 | 0.815961 | 7.07E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene81272 | 0.808284 | 3.34E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene81272 | 0.817144 | 3.84E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene81272 | 0.827739 | 1.32E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene81272 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene055147 | MS.gene81272 | 0.813571 | 2.39E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene81272 | 0.80427 | 2.34E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene81272 | 0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene056064 | MS.gene81272 | 0.807097 | 5.97E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene81272 | 0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene81272 | 0.828588 | 8.27E-55 | -1.69E-46 |
| MS.gene05956 | MS.gene81272 | 0.805532 | 1.28E-49 | -1.69E-46 |
| MS.gene059686 | MS.gene81272 | 0.801904 | 7.23E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene81272 | 0.808161 | 3.55E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81272.t1 | MTR_5g096700 | 93.333 | 330 | 20 | 1 | 1 | 328 | 1 | 330 | 0.0 | 637 |
| MS.gene81272.t1 | MTR_5g096700 | 92.989 | 271 | 19 | 0 | 58 | 328 | 1 | 271 | 0.0 | 519 |
| MS.gene81272.t1 | MTR_3g061090 | 63.830 | 329 | 116 | 3 | 1 | 327 | 1 | 328 | 2.68e-151 | 428 |
| MS.gene81272.t1 | MTR_3g061090 | 65.370 | 257 | 86 | 3 | 73 | 327 | 1 | 256 | 4.26e-116 | 336 |
| MS.gene81272.t1 | MTR_1g029850 | 45.231 | 325 | 173 | 3 | 7 | 327 | 5 | 328 | 8.02e-101 | 300 |
| MS.gene81272.t1 | MTR_3g088560 | 47.205 | 322 | 165 | 4 | 5 | 323 | 2 | 321 | 1.14e-100 | 299 |
| MS.gene81272.t1 | MTR_5g096790 | 45.619 | 331 | 153 | 10 | 6 | 323 | 6 | 322 | 9.82e-87 | 264 |
| MS.gene81272.t1 | MTR_3g088560 | 47.699 | 239 | 121 | 3 | 88 | 323 | 14 | 251 | 2.35e-70 | 219 |
| MS.gene81272.t1 | MTR_3g088560 | 47.679 | 237 | 120 | 3 | 90 | 323 | 31 | 266 | 1.32e-69 | 218 |
| MS.gene81272.t1 | MTR_3g088560 | 47.475 | 198 | 100 | 3 | 129 | 323 | 3 | 199 | 1.80e-55 | 179 |
| MS.gene81272.t1 | MTR_3g072160 | 34.337 | 166 | 101 | 4 | 133 | 292 | 33 | 196 | 8.73e-14 | 70.1 |
| MS.gene81272.t1 | MTR_3g072160 | 34.337 | 166 | 101 | 4 | 133 | 292 | 70 | 233 | 1.34e-13 | 70.5 |
| MS.gene81272.t1 | MTR_7g094490 | 28.000 | 150 | 96 | 3 | 153 | 291 | 197 | 345 | 5.66e-12 | 66.6 |
| MS.gene81272.t1 | MTR_3g088660 | 40.230 | 87 | 47 | 2 | 174 | 258 | 94 | 177 | 1.81e-11 | 63.9 |
| MS.gene81272.t1 | MTR_7g094910 | 28.462 | 130 | 91 | 2 | 163 | 292 | 526 | 653 | 1.91e-11 | 65.5 |
| MS.gene81272.t1 | MTR_7g094900 | 28.462 | 130 | 91 | 2 | 163 | 292 | 545 | 672 | 1.91e-11 | 65.5 |
| MS.gene81272.t1 | MTR_1g072650 | 27.815 | 151 | 97 | 3 | 153 | 292 | 201 | 350 | 2.25e-11 | 64.7 |
| MS.gene81272.t1 | MTR_5g005940 | 26.531 | 147 | 105 | 3 | 157 | 302 | 530 | 674 | 2.49e-11 | 65.1 |
| MS.gene81272.t1 | MTR_5g087500 | 29.487 | 156 | 90 | 4 | 153 | 292 | 191 | 342 | 9.31e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81272.t1 | AT1G55760 | 56.402 | 328 | 141 | 2 | 1 | 327 | 1 | 327 | 2.94e-136 | 390 |
| MS.gene81272.t1 | AT1G21780 | 48.137 | 322 | 164 | 3 | 7 | 327 | 5 | 324 | 5.90e-110 | 323 |
| MS.gene81272.t1 | AT1G21780 | 48.137 | 322 | 164 | 3 | 7 | 327 | 5 | 324 | 5.90e-110 | 323 |
| MS.gene81272.t1 | AT3G56230 | 31.169 | 154 | 103 | 3 | 142 | 292 | 90 | 243 | 8.58e-15 | 73.9 |
| MS.gene81272.t1 | AT1G01640 | 29.255 | 188 | 129 | 4 | 142 | 327 | 3 | 188 | 8.98e-15 | 72.4 |
| MS.gene81272.t1 | AT1G01640 | 29.586 | 169 | 115 | 4 | 161 | 327 | 1 | 167 | 1.67e-13 | 68.6 |
| MS.gene81272.t1 | AT1G05690 | 26.415 | 159 | 108 | 4 | 149 | 301 | 40 | 195 | 5.12e-12 | 66.6 |
| MS.gene81272.t1 | AT2G30600 | 29.747 | 158 | 104 | 4 | 125 | 275 | 311 | 468 | 1.01e-11 | 66.2 |
| MS.gene81272.t1 | AT2G30600 | 29.747 | 158 | 104 | 4 | 125 | 275 | 311 | 468 | 1.01e-11 | 66.2 |
| MS.gene81272.t1 | AT2G30600 | 29.747 | 158 | 104 | 4 | 125 | 275 | 311 | 468 | 1.01e-11 | 66.2 |
| MS.gene81272.t1 | AT2G30600 | 29.747 | 158 | 104 | 4 | 125 | 275 | 311 | 468 | 1.01e-11 | 66.2 |
| MS.gene81272.t1 | AT2G30600 | 29.747 | 158 | 104 | 4 | 125 | 275 | 311 | 468 | 1.04e-11 | 66.2 |
| MS.gene81272.t1 | AT2G39760 | 28.571 | 147 | 93 | 2 | 156 | 291 | 187 | 332 | 1.50e-11 | 65.1 |
| MS.gene81272.t1 | AT2G39760 | 28.571 | 147 | 93 | 2 | 156 | 291 | 187 | 332 | 1.83e-11 | 64.7 |
| MS.gene81272.t1 | AT2G39760 | 28.571 | 147 | 93 | 2 | 156 | 291 | 187 | 332 | 1.83e-11 | 64.7 |
| MS.gene81272.t1 | AT4G08455 | 35.398 | 113 | 64 | 4 | 162 | 268 | 90 | 199 | 2.23e-11 | 63.9 |
| MS.gene81272.t1 | AT2G39760 | 28.571 | 147 | 93 | 2 | 156 | 291 | 187 | 332 | 3.02e-11 | 64.3 |
| MS.gene81272.t1 | AT5G63160 | 28.824 | 170 | 114 | 4 | 161 | 325 | 23 | 190 | 4.85e-11 | 63.2 |
| MS.gene81272.t1 | AT5G63160 | 28.824 | 170 | 114 | 4 | 161 | 325 | 23 | 190 | 6.36e-11 | 63.2 |
Find 42 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATTGACATTGAGTTTC+TGG | 0.099574 | 5.2:+81047207 | MS.gene81272:CDS |
| GTGCAATATCTTGTAAAATT+TGG | 0.225680 | 5.2:+81047990 | MS.gene81272:CDS |
| ATTGATACAAAGATGCAATT+TGG | 0.251499 | 5.2:-81047944 | None:intergenic |
| TGACATGTCGGTGATGTTTA+TGG | 0.257723 | 5.2:-81047742 | None:intergenic |
| GCTTGCTCTATTTGGTCTAA+TGG | 0.285746 | 5.2:+81047525 | MS.gene81272:CDS |
| CCATTGAACTAGACGATTCA+TGG | 0.288711 | 5.2:-81046686 | None:intergenic |
| CAATTGCATCTTTCATAGTT+AGG | 0.300214 | 5.2:+81046940 | MS.gene81272:CDS |
| GTGGGGAAGCTTGCTCTATT+TGG | 0.307214 | 5.2:+81047517 | MS.gene81272:CDS |
| GATAGCTTTGTGTGGGAGAT+TGG | 0.337706 | 5.2:+81047163 | MS.gene81272:CDS |
| AGGATTGTGTGTGATTGTTT+TGG | 0.337739 | 5.2:-81046916 | None:intergenic |
| AGAATTTCTTATACATAGAT+TGG | 0.343658 | 5.2:+81047818 | MS.gene81272:CDS |
| ACTTGTCAGCCGCATGTAAT+AGG | 0.362904 | 5.2:-81047842 | None:intergenic |
| GAATCCTTTGGTCGAATGAT+AGG | 0.364581 | 5.2:+81047582 | MS.gene81272:CDS |
| TCAAAGAAATTCTTGATGCT+TGG | 0.368629 | 5.2:+81048087 | MS.gene81272:CDS |
| AGATAAACTTCTTAGCAATA+AGG | 0.369571 | 5.2:+81047141 | MS.gene81272:CDS |
| AGCAAAATCTTGACTCAATC+AGG | 0.374788 | 5.2:+81046984 | MS.gene81272:CDS |
| GTTAGGATTCTTAGTTATGC+TGG | 0.386999 | 5.2:+81046957 | MS.gene81272:CDS |
| TCAAAATAGCCATGTGGAAC+TGG | 0.403978 | 5.2:+81046755 | MS.gene81272:CDS |
| GCAGCAGCCCTTGAATCCTT+TGG | 0.410158 | 5.2:+81047570 | MS.gene81272:CDS |
| AAAGAAAATTTATAAACGTC+TGG | 0.434882 | 5.2:-81047776 | None:intergenic |
| CTAACTATGAAAGATGCAAT+TGG | 0.440177 | 5.2:-81046939 | None:intergenic |
| ATGAGCTCTTATGCTTCCTT+CGG | 0.452327 | 5.2:-81047643 | None:intergenic |
| CCATGAATCGTCTAGTTCAA+TGG | 0.453483 | 5.2:+81046686 | MS.gene81272:CDS |
| TCATTCGACCAAAGGATTCA+AGG | 0.473708 | 5.2:-81047578 | None:intergenic |
| GGCAAAATATATGATATTCA+AGG | 0.488841 | 5.2:+81048011 | MS.gene81272:CDS |
| TTCTCCTATCATTCGACCAA+AGG | 0.495648 | 5.2:-81047586 | None:intergenic |
| TTTGAAAATTTCATGTCCAA+AGG | 0.520798 | 5.2:+81047231 | MS.gene81272:CDS |
| GAGATTGGAGTTCCATTACC+TGG | 0.545273 | 5.2:+81047178 | MS.gene81272:CDS |
| ACTATGAAAGATGCAATTGG+AGG | 0.556805 | 5.2:-81046936 | None:intergenic |
| CATTCGACCAAAGGATTCAA+GGG | 0.558686 | 5.2:-81047577 | None:intergenic |
| CAATAAGGATAGCTTTGTGT+GGG | 0.566302 | 5.2:+81047156 | MS.gene81272:CDS |
| GATATGAAGGCATTTATCAG+TGG | 0.615660 | 5.2:+81046851 | MS.gene81272:intron |
| GCAATAAGGATAGCTTTGTG+TGG | 0.617349 | 5.2:+81047155 | MS.gene81272:CDS |
| ACAATCAACGTCAATTCCGA+AGG | 0.618813 | 5.2:+81047627 | MS.gene81272:CDS |
| TTGACTTTACCAGTTCCACA+TGG | 0.646739 | 5.2:-81046764 | None:intergenic |
| TTATCAGTGGAAAAGAACTG+TGG | 0.666641 | 5.2:+81046864 | MS.gene81272:CDS |
| GAAAACATGCTGTGAAACAC+AGG | 0.667859 | 5.2:-81047690 | None:intergenic |
| GAAAGATTGAATTGACATGT+CGG | 0.685189 | 5.2:-81047754 | None:intergenic |
| TAGATTGGACCTATTACATG+CGG | 0.685610 | 5.2:+81047833 | MS.gene81272:CDS |
| TGATATCTATGAGTTAAGAG+AGG | 0.687061 | 5.2:+81047866 | MS.gene81272:CDS |
| ATCCATTCAAAATAGCCATG+TGG | 0.702367 | 5.2:+81046749 | MS.gene81272:CDS |
| GTGAAACACAGGTGATTGTG+AGG | 0.704876 | 5.2:-81047679 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACAAAATATAAAGTAAA+TGG | - | chr5.2:81047386-81047405 | None:intergenic | 10.0% |
| !!! | ACGTTTATAAATTTTCTTTA+TGG | + | chr5.2:81047780-81047799 | MS.gene81272:CDS | 15.0% |
| !!! | ATCAAGCAAAATTTTAAATT+AGG | - | chr5.2:81047486-81047505 | None:intergenic | 15.0% |
| !! | AAAGAAAATTTATAAACGTC+TGG | - | chr5.2:81047779-81047798 | None:intergenic | 20.0% |
| !! | AGAATTTCTTATACATAGAT+TGG | + | chr5.2:81047818-81047837 | MS.gene81272:CDS | 20.0% |
| !! | ATGGATAACTAATAAAAGTA+TGG | - | chr5.2:81047277-81047296 | None:intergenic | 20.0% |
| !! | ATTATATACTTACATACCTT+TGG | - | chr5.2:81047250-81047269 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTGATTTGAATAA+AGG | + | chr5.2:81047494-81047513 | MS.gene81272:intron | 20.0% |
| !!! | TTTTGCTTGATTTGAATAAA+GGG | + | chr5.2:81047495-81047514 | MS.gene81272:intron | 20.0% |
| ! | AGATAAACTTCTTAGCAATA+AGG | + | chr5.2:81047141-81047160 | MS.gene81272:CDS | 25.0% |
| ! | ATTGATACAAAGATGCAATT+TGG | - | chr5.2:81047947-81047966 | None:intergenic | 25.0% |
| ! | GGCAAAATATATGATATTCA+AGG | + | chr5.2:81048011-81048030 | MS.gene81272:CDS | 25.0% |
| ! | GTGCAATATCTTGTAAAATT+TGG | + | chr5.2:81047990-81048009 | MS.gene81272:CDS | 25.0% |
| ! | TTTGAAAATTTCATGTCCAA+AGG | + | chr5.2:81047231-81047250 | MS.gene81272:CDS | 25.0% |
| !! | ACTTTTATTAGTTATCCATG+TGG | + | chr5.2:81047278-81047297 | MS.gene81272:intron | 25.0% |
| !! | ATGTCAATTATGAATTTTCC+AGG | - | chr5.2:81047199-81047218 | None:intergenic | 25.0% |
| !! | ATTATGAATTTTCCAGGTAA+TGG | - | chr5.2:81047193-81047212 | None:intergenic | 25.0% |
| !!! | ATAATCATAGTATTGATCTG+AGG | + | chr5.2:81047437-81047456 | MS.gene81272:intron | 25.0% |
| !!! | GTTTTGTTCTTATGATATGA+AGG | + | chr5.2:81046838-81046857 | MS.gene81272:intron | 25.0% |
| !!! | TAATCATAGTATTGATCTGA+GGG | + | chr5.2:81047438-81047457 | MS.gene81272:intron | 25.0% |
| CAATTGCATCTTTCATAGTT+AGG | + | chr5.2:81046940-81046959 | MS.gene81272:CDS | 30.0% | |
| CATAATTGACATTGAGTTTC+TGG | + | chr5.2:81047207-81047226 | MS.gene81272:CDS | 30.0% | |
| CTAACTATGAAAGATGCAAT+TGG | - | chr5.2:81046942-81046961 | None:intergenic | 30.0% | |
| GAAAGATTGAATTGACATGT+CGG | - | chr5.2:81047757-81047776 | None:intergenic | 30.0% | |
| TCAAAGAAATTCTTGATGCT+TGG | + | chr5.2:81048087-81048106 | MS.gene81272:CDS | 30.0% | |
| TGATATCTATGAGTTAAGAG+AGG | + | chr5.2:81047866-81047885 | MS.gene81272:CDS | 30.0% | |
| ! | CATGTTTTCACACAATGTTA+AGG | + | chr5.2:81047704-81047723 | MS.gene81272:CDS | 30.0% |
| !!! | AGTCTCTCAAGTACATTTTT+TGG | - | chr5.2:81047924-81047943 | None:intergenic | 30.0% |
| !!! | CTTTTATTTCTACATCAGTG+TGG | - | chr5.2:81047123-81047142 | None:intergenic | 30.0% |
| ACTATGAAAGATGCAATTGG+AGG | - | chr5.2:81046939-81046958 | None:intergenic | 35.0% | |
| AGCAAAATCTTGACTCAATC+AGG | + | chr5.2:81046984-81047003 | MS.gene81272:CDS | 35.0% | |
| ATCCATTCAAAATAGCCATG+TGG | + | chr5.2:81046749-81046768 | MS.gene81272:CDS | 35.0% | |
| GTTAGGATTCTTAGTTATGC+TGG | + | chr5.2:81046957-81046976 | MS.gene81272:CDS | 35.0% | |
| TAGATTGGACCTATTACATG+CGG | + | chr5.2:81047833-81047852 | MS.gene81272:CDS | 35.0% | |
| TTATCAGTGGAAAAGAACTG+TGG | + | chr5.2:81046864-81046883 | MS.gene81272:CDS | 35.0% | |
| ! | AGGATTGTGTGTGATTGTTT+TGG | - | chr5.2:81046919-81046938 | None:intergenic | 35.0% |
| ! | CTTGATTTGAATAAAGGGTG+GGG | + | chr5.2:81047500-81047519 | MS.gene81272:intron | 35.0% |
| ! | GCTTGATTTGAATAAAGGGT+GGG | + | chr5.2:81047499-81047518 | MS.gene81272:intron | 35.0% |
| ! | TGCTTGATTTGAATAAAGGG+TGG | + | chr5.2:81047498-81047517 | MS.gene81272:intron | 35.0% |
| !! | CAATAAGGATAGCTTTGTGT+GGG | + | chr5.2:81047156-81047175 | MS.gene81272:CDS | 35.0% |
| !! | GATATGAAGGCATTTATCAG+TGG | + | chr5.2:81046851-81046870 | MS.gene81272:intron | 35.0% |
| !! | TTCCACATGGCTATTTTGAA+TGG | - | chr5.2:81046754-81046773 | None:intergenic | 35.0% |
| !!! | GTGATTGTTTTGGACATTTC+TGG | - | chr5.2:81046909-81046928 | None:intergenic | 35.0% |
| ACAATCAACGTCAATTCCGA+AGG | + | chr5.2:81047627-81047646 | MS.gene81272:CDS | 40.0% | |
| ATGAGCTCTTATGCTTCCTT+CGG | - | chr5.2:81047646-81047665 | None:intergenic | 40.0% | |
| ATTTCTGAGTCAGTACCACA+TGG | - | chr5.2:81047296-81047315 | None:intergenic | 40.0% | |
| CATTCGACCAAAGGATTCAA+GGG | - | chr5.2:81047580-81047599 | None:intergenic | 40.0% | |
| CCATTGAACTAGACGATTCA+TGG | - | chr5.2:81046689-81046708 | None:intergenic | 40.0% | |
| GAAAACATGCTGTGAAACAC+AGG | - | chr5.2:81047693-81047712 | None:intergenic | 40.0% | |
| GAATCCTTTGGTCGAATGAT+AGG | + | chr5.2:81047582-81047601 | MS.gene81272:CDS | 40.0% | |
| GCTTGCTCTATTTGGTCTAA+TGG | + | chr5.2:81047525-81047544 | MS.gene81272:CDS | 40.0% | |
| TCAAAATAGCCATGTGGAAC+TGG | + | chr5.2:81046755-81046774 | MS.gene81272:CDS | 40.0% | |
| TCATTCGACCAAAGGATTCA+AGG | - | chr5.2:81047581-81047600 | None:intergenic | 40.0% | |
| TGACATGTCGGTGATGTTTA+TGG | - | chr5.2:81047745-81047764 | None:intergenic | 40.0% | |
| TTCTCCTATCATTCGACCAA+AGG | - | chr5.2:81047589-81047608 | None:intergenic | 40.0% | |
| TTGACTTTACCAGTTCCACA+TGG | - | chr5.2:81046767-81046786 | None:intergenic | 40.0% | |
| ! | CCATGAATCGTCTAGTTCAA+TGG | + | chr5.2:81046686-81046705 | MS.gene81272:CDS | 40.0% |
| !! | GCAATAAGGATAGCTTTGTG+TGG | + | chr5.2:81047155-81047174 | MS.gene81272:CDS | 40.0% |
| ACTTGTCAGCCGCATGTAAT+AGG | - | chr5.2:81047845-81047864 | None:intergenic | 45.0% | |
| GAGATTGGAGTTCCATTACC+TGG | + | chr5.2:81047178-81047197 | MS.gene81272:CDS | 45.0% | |
| GTGAAACACAGGTGATTGTG+AGG | - | chr5.2:81047682-81047701 | None:intergenic | 45.0% | |
| !! | GATAGCTTTGTGTGGGAGAT+TGG | + | chr5.2:81047163-81047182 | MS.gene81272:CDS | 45.0% |
| ! | GTGGGGAAGCTTGCTCTATT+TGG | + | chr5.2:81047517-81047536 | MS.gene81272:CDS | 50.0% |
| GCAGCAGCCCTTGAATCCTT+TGG | + | chr5.2:81047570-81047589 | MS.gene81272:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 81046658 | 81048118 | 81046658 | ID=MS.gene81272 |
| chr5.2 | mRNA | 81046658 | 81048118 | 81046658 | ID=MS.gene81272.t1;Parent=MS.gene81272 |
| chr5.2 | exon | 81046658 | 81046776 | 81046658 | ID=MS.gene81272.t1.exon1;Parent=MS.gene81272.t1 |
| chr5.2 | CDS | 81046658 | 81046776 | 81046658 | ID=cds.MS.gene81272.t1;Parent=MS.gene81272.t1 |
| chr5.2 | exon | 81046860 | 81047005 | 81046860 | ID=MS.gene81272.t1.exon2;Parent=MS.gene81272.t1 |
| chr5.2 | CDS | 81046860 | 81047005 | 81046860 | ID=cds.MS.gene81272.t1;Parent=MS.gene81272.t1 |
| chr5.2 | exon | 81047134 | 81047252 | 81047134 | ID=MS.gene81272.t1.exon3;Parent=MS.gene81272.t1 |
| chr5.2 | CDS | 81047134 | 81047252 | 81047134 | ID=cds.MS.gene81272.t1;Parent=MS.gene81272.t1 |
| chr5.2 | exon | 81047516 | 81048118 | 81047516 | ID=MS.gene81272.t1.exon4;Parent=MS.gene81272.t1 |
| chr5.2 | CDS | 81047516 | 81048118 | 81047516 | ID=cds.MS.gene81272.t1;Parent=MS.gene81272.t1 |
| Gene Sequence |
| Protein sequence |
