Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81425.t1 | RXI03419.1 | 60.1 | 845 | 213 | 4 | 1 | 844 | 1 | 722 | 6.60E-283 | 983.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81425.t1 | P48528 | 95.5 | 289 | 13 | 0 | 1 | 289 | 1 | 289 | 2.6e-166 | 587.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81425.t1 | A0A498K594 | 60.1 | 845 | 213 | 4 | 1 | 844 | 1 | 722 | 4.8e-283 | 983.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene81425 | 0.809522 | 1.82E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene81425 | 0.808599 | 2.86E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene81425 | 0.802317 | 5.94E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene81425 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene81425 | 0.836064 | 1.16E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene81425 | 0.808206 | 3.47E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene81425 | 0.800476 | 1.42E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene81425 | 0.808479 | 3.04E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene81425 | 0.803122 | 4.05E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene81425 | 0.813748 | 2.19E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene81425 | 0.800637 | 1.31E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene81425 | 0.801625 | 8.24E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene81425 | 0.810931 | 9.02E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene81425 | 0.814838 | 1.26E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene81425 | 0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene81425 | 0.825272 | 5.13E-54 | -1.69E-46 |
| MS.gene057314 | MS.gene81425 | 0.832174 | 1.10E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene81425 | 0.818052 | 2.40E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene81425 | 0.808947 | 2.41E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene81425 | 0.830997 | 2.14E-55 | -1.69E-46 |
| MS.gene059842 | MS.gene81425 | 0.826195 | 3.10E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene81425 | 0.821258 | 4.44E-53 | -1.69E-46 |
| MS.gene060373 | MS.gene81425 | 0.801754 | 7.76E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene81425 | 0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene81425 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene060919 | MS.gene81425 | 0.801224 | 9.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81425.t1 | MTR_5g093980 | 96.574 | 467 | 16 | 0 | 391 | 857 | 24 | 490 | 0.0 | 906 |
| MS.gene81425.t1 | MTR_5g093990 | 99.655 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 0.0 | 613 |
| MS.gene81425.t1 | MTR_3g054360 | 60.294 | 476 | 186 | 3 | 384 | 857 | 18 | 492 | 0.0 | 588 |
| MS.gene81425.t1 | MTR_5g084690 | 49.032 | 465 | 233 | 3 | 392 | 852 | 30 | 494 | 4.28e-152 | 456 |
| MS.gene81425.t1 | MTR_8g062430 | 67.241 | 290 | 94 | 1 | 2 | 291 | 5 | 293 | 7.41e-146 | 432 |
| MS.gene81425.t1 | MTR_5g037200 | 67.241 | 290 | 94 | 1 | 2 | 291 | 5 | 293 | 7.83e-145 | 430 |
| MS.gene81425.t1 | MTR_8g085610 | 66.667 | 288 | 95 | 1 | 2 | 289 | 7 | 293 | 3.45e-142 | 423 |
| MS.gene81425.t1 | MTR_7g107310 | 65.854 | 287 | 97 | 1 | 3 | 289 | 13 | 298 | 6.90e-142 | 422 |
| MS.gene81425.t1 | MTR_8g085610 | 67.286 | 269 | 87 | 1 | 21 | 289 | 2 | 269 | 1.92e-133 | 399 |
| MS.gene81425.t1 | MTR_1g039380 | 62.544 | 283 | 104 | 2 | 3 | 284 | 2 | 283 | 3.19e-131 | 394 |
| MS.gene81425.t1 | MTR_1g039380 | 64.479 | 259 | 90 | 2 | 27 | 284 | 2 | 259 | 6.55e-126 | 380 |
| MS.gene81425.t1 | MTR_1g079950 | 48.339 | 271 | 139 | 1 | 17 | 287 | 26 | 295 | 5.08e-91 | 291 |
| MS.gene81425.t1 | MTR_1g079950 | 48.339 | 271 | 139 | 1 | 17 | 287 | 26 | 295 | 5.50e-91 | 290 |
| MS.gene81425.t1 | MTR_1g079950 | 48.339 | 271 | 139 | 1 | 17 | 287 | 26 | 295 | 5.52e-91 | 290 |
| MS.gene81425.t1 | MTR_1g079950 | 48.339 | 271 | 139 | 1 | 17 | 287 | 55 | 324 | 8.01e-91 | 291 |
| MS.gene81425.t1 | MTR_7g116380 | 47.970 | 271 | 140 | 1 | 17 | 287 | 26 | 295 | 1.93e-89 | 286 |
| MS.gene81425.t1 | MTR_7g116380 | 47.970 | 271 | 140 | 1 | 17 | 287 | 26 | 295 | 2.25e-89 | 286 |
| MS.gene81425.t1 | MTR_5g037200 | 70.879 | 182 | 53 | 0 | 2 | 183 | 5 | 186 | 4.43e-89 | 281 |
| MS.gene81425.t1 | MTR_5g081230 | 44.863 | 292 | 155 | 2 | 1 | 287 | 22 | 312 | 9.39e-89 | 285 |
| MS.gene81425.t1 | MTR_1g043240 | 48.689 | 267 | 136 | 1 | 17 | 283 | 26 | 291 | 1.22e-88 | 284 |
| MS.gene81425.t1 | MTR_1g074880 | 48.188 | 276 | 139 | 2 | 17 | 289 | 26 | 300 | 1.50e-88 | 284 |
| MS.gene81425.t1 | MTR_1g074880 | 48.188 | 276 | 139 | 2 | 17 | 289 | 26 | 300 | 1.51e-88 | 284 |
| MS.gene81425.t1 | MTR_7g112870 | 47.810 | 274 | 142 | 1 | 17 | 290 | 28 | 300 | 1.98e-87 | 281 |
| MS.gene81425.t1 | MTR_8g098980 | 46.520 | 273 | 145 | 1 | 17 | 289 | 27 | 298 | 2.99e-87 | 280 |
| MS.gene81425.t1 | MTR_8g005010 | 46.233 | 292 | 147 | 3 | 1 | 284 | 1 | 290 | 5.15e-87 | 279 |
| MS.gene81425.t1 | MTR_1g079950 | 47.451 | 255 | 129 | 2 | 33 | 287 | 20 | 269 | 8.87e-79 | 258 |
| MS.gene81425.t1 | MTR_1g074880 | 49.383 | 243 | 119 | 2 | 50 | 289 | 4 | 245 | 4.28e-77 | 251 |
| MS.gene81425.t1 | MTR_1g074880 | 49.383 | 243 | 119 | 2 | 50 | 289 | 4 | 245 | 5.10e-77 | 251 |
| MS.gene81425.t1 | MTR_3g452710 | 43.089 | 246 | 135 | 5 | 47 | 289 | 222 | 465 | 3.79e-55 | 198 |
| MS.gene81425.t1 | MTR_3g452710 | 38.225 | 293 | 172 | 6 | 4 | 289 | 242 | 532 | 1.18e-54 | 199 |
| MS.gene81425.t1 | MTR_1g089370 | 42.007 | 269 | 139 | 6 | 17 | 270 | 548 | 814 | 1.23e-54 | 204 |
| MS.gene81425.t1 | MTR_2g087530 | 41.026 | 273 | 144 | 6 | 20 | 277 | 554 | 824 | 1.76e-53 | 201 |
| MS.gene81425.t1 | MTR_2g087530 | 41.026 | 273 | 144 | 6 | 20 | 277 | 667 | 937 | 2.27e-53 | 201 |
| MS.gene81425.t1 | MTR_4g050540 | 41.697 | 271 | 145 | 5 | 20 | 277 | 672 | 942 | 5.11e-53 | 200 |
| MS.gene81425.t1 | MTR_2g100130 | 41.532 | 248 | 139 | 6 | 46 | 289 | 139 | 384 | 4.83e-52 | 187 |
| MS.gene81425.t1 | MTR_2g100130 | 41.532 | 248 | 139 | 6 | 46 | 289 | 238 | 483 | 1.76e-51 | 188 |
| MS.gene81425.t1 | MTR_2g100130 | 41.532 | 248 | 139 | 6 | 46 | 289 | 248 | 493 | 1.93e-51 | 189 |
| MS.gene81425.t1 | MTR_2g100130 | 41.532 | 248 | 139 | 6 | 46 | 289 | 209 | 454 | 3.57e-51 | 187 |
| MS.gene81425.t1 | MTR_2g100130 | 38.889 | 270 | 151 | 7 | 46 | 312 | 248 | 506 | 1.08e-50 | 187 |
| MS.gene81425.t1 | MTR_2g100160 | 42.339 | 248 | 137 | 6 | 46 | 289 | 158 | 403 | 1.14e-49 | 181 |
| MS.gene81425.t1 | MTR_2g100130 | 38.889 | 270 | 150 | 8 | 46 | 312 | 248 | 505 | 2.09e-49 | 183 |
| MS.gene81425.t1 | MTR_2g100130 | 38.889 | 270 | 150 | 8 | 46 | 312 | 209 | 466 | 5.37e-49 | 181 |
| MS.gene81425.t1 | MTR_2g100130 | 43.836 | 219 | 118 | 5 | 46 | 261 | 248 | 464 | 2.31e-48 | 179 |
| MS.gene81425.t1 | MTR_3g054370 | 60.345 | 116 | 45 | 1 | 388 | 502 | 22 | 137 | 2.41e-35 | 131 |
| MS.gene81425.t1 | MTR_8g072600 | 31.627 | 332 | 155 | 12 | 24 | 286 | 100 | 428 | 3.39e-30 | 125 |
| MS.gene81425.t1 | MTR_8g072600 | 34.146 | 246 | 113 | 9 | 24 | 223 | 100 | 342 | 1.43e-27 | 115 |
| MS.gene81425.t1 | MTR_2g099710 | 29.537 | 281 | 123 | 11 | 29 | 260 | 218 | 472 | 3.59e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81425.t1 | AT5G55260 | 95.172 | 290 | 14 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
| MS.gene81425.t1 | AT4G26720 | 92.042 | 289 | 23 | 0 | 1 | 289 | 1 | 289 | 0.0 | 573 |
| MS.gene81425.t1 | AT5G55260 | 83.384 | 331 | 14 | 1 | 1 | 290 | 1 | 331 | 0.0 | 572 |
| MS.gene81425.t1 | AT1G04970 | 49.024 | 461 | 231 | 2 | 386 | 844 | 21 | 479 | 8.80e-159 | 473 |
| MS.gene81425.t1 | AT1G10430 | 66.552 | 290 | 96 | 1 | 2 | 291 | 5 | 293 | 1.26e-144 | 429 |
| MS.gene81425.t1 | AT1G10430 | 66.552 | 290 | 96 | 1 | 2 | 291 | 5 | 293 | 1.26e-144 | 429 |
| MS.gene81425.t1 | AT1G59830 | 67.241 | 290 | 94 | 1 | 2 | 291 | 5 | 293 | 2.41e-144 | 429 |
| MS.gene81425.t1 | AT1G69960 | 66.897 | 290 | 95 | 1 | 2 | 291 | 6 | 294 | 5.13e-144 | 428 |
| MS.gene81425.t1 | AT2G42500 | 66.551 | 287 | 95 | 1 | 3 | 289 | 13 | 298 | 1.01e-143 | 427 |
| MS.gene81425.t1 | AT3G58500 | 66.202 | 287 | 96 | 1 | 3 | 289 | 13 | 298 | 2.80e-143 | 426 |
| MS.gene81425.t1 | AT1G50370 | 62.191 | 283 | 105 | 2 | 3 | 284 | 2 | 283 | 5.41e-131 | 394 |
| MS.gene81425.t1 | AT3G19980 | 62.191 | 283 | 105 | 2 | 3 | 284 | 2 | 283 | 1.62e-130 | 393 |
| MS.gene81425.t1 | AT3G20270 | 43.038 | 474 | 265 | 3 | 368 | 841 | 41 | 509 | 8.67e-127 | 391 |
| MS.gene81425.t1 | AT3G20270 | 43.038 | 474 | 265 | 3 | 368 | 841 | 41 | 509 | 8.67e-127 | 391 |
| MS.gene81425.t1 | AT3G20270 | 43.038 | 474 | 265 | 3 | 368 | 841 | 41 | 509 | 8.67e-127 | 391 |
| MS.gene81425.t1 | AT1G59830 | 67.578 | 256 | 80 | 2 | 2 | 255 | 5 | 259 | 3.14e-124 | 375 |
| MS.gene81425.t1 | AT3G20270 | 44.889 | 450 | 243 | 3 | 392 | 841 | 272 | 716 | 8.08e-124 | 390 |
| MS.gene81425.t1 | AT3G20270 | 44.889 | 450 | 243 | 3 | 392 | 841 | 272 | 716 | 8.08e-124 | 390 |
| MS.gene81425.t1 | AT1G04970 | 48.844 | 346 | 173 | 2 | 501 | 844 | 10 | 353 | 1.84e-114 | 353 |
| MS.gene81425.t1 | AT1G04970 | 48.844 | 346 | 173 | 2 | 501 | 844 | 10 | 353 | 1.84e-114 | 353 |
| MS.gene81425.t1 | AT2G42500 | 55.401 | 287 | 80 | 2 | 3 | 289 | 13 | 251 | 5.19e-109 | 335 |
| MS.gene81425.t1 | AT3G20270 | 43.262 | 423 | 235 | 3 | 368 | 790 | 41 | 458 | 5.38e-109 | 343 |
| MS.gene81425.t1 | AT1G64040 | 48.352 | 273 | 140 | 1 | 17 | 289 | 27 | 298 | 1.49e-89 | 286 |
| MS.gene81425.t1 | AT2G39840 | 45.238 | 294 | 155 | 2 | 1 | 289 | 19 | 311 | 2.73e-89 | 286 |
| MS.gene81425.t1 | AT5G43380 | 48.148 | 270 | 139 | 1 | 17 | 286 | 26 | 294 | 3.25e-89 | 286 |
| MS.gene81425.t1 | AT5G43380 | 48.148 | 270 | 139 | 1 | 17 | 286 | 26 | 294 | 4.00e-89 | 286 |
| MS.gene81425.t1 | AT5G43380 | 48.148 | 270 | 139 | 1 | 17 | 286 | 26 | 294 | 6.13e-89 | 285 |
| MS.gene81425.t1 | AT5G59160 | 47.601 | 271 | 141 | 1 | 17 | 287 | 36 | 305 | 9.94e-89 | 284 |
| MS.gene81425.t1 | AT5G59160 | 47.601 | 271 | 141 | 1 | 17 | 287 | 36 | 305 | 9.94e-89 | 284 |
| MS.gene81425.t1 | AT5G59160 | 47.601 | 271 | 141 | 1 | 17 | 287 | 36 | 305 | 9.94e-89 | 284 |
| MS.gene81425.t1 | AT2G29400 | 44.558 | 294 | 154 | 3 | 1 | 287 | 20 | 311 | 3.86e-88 | 283 |
| MS.gene81425.t1 | AT4G11240 | 47.619 | 273 | 142 | 1 | 17 | 289 | 27 | 298 | 1.45e-87 | 281 |
| MS.gene81425.t1 | AT5G27840 | 48.162 | 272 | 140 | 1 | 17 | 288 | 32 | 302 | 1.85e-87 | 281 |
| MS.gene81425.t1 | AT5G27840 | 48.162 | 272 | 140 | 1 | 17 | 288 | 32 | 302 | 2.61e-87 | 281 |
| MS.gene81425.t1 | AT5G27840 | 48.162 | 272 | 140 | 1 | 17 | 288 | 32 | 302 | 3.17e-87 | 280 |
| MS.gene81425.t1 | AT5G27840 | 48.162 | 272 | 140 | 1 | 17 | 288 | 32 | 302 | 3.17e-87 | 280 |
| MS.gene81425.t1 | AT3G05580 | 48.162 | 272 | 140 | 1 | 17 | 288 | 32 | 302 | 3.74e-87 | 280 |
| MS.gene81425.t1 | AT3G46820 | 46.816 | 267 | 141 | 1 | 17 | 283 | 36 | 301 | 3.36e-85 | 275 |
| MS.gene81425.t1 | AT3G05580 | 50.901 | 222 | 108 | 1 | 17 | 238 | 32 | 252 | 2.03e-74 | 244 |
| MS.gene81425.t1 | AT2G42500 | 68.182 | 154 | 46 | 1 | 3 | 153 | 13 | 166 | 1.15e-69 | 228 |
| MS.gene81425.t1 | AT2G42500 | 68.627 | 153 | 45 | 1 | 3 | 152 | 13 | 165 | 1.76e-69 | 227 |
| MS.gene81425.t1 | AT2G42500 | 68.182 | 154 | 46 | 1 | 3 | 153 | 13 | 166 | 4.94e-69 | 226 |
| MS.gene81425.t1 | AT2G42810 | 39.792 | 289 | 165 | 6 | 8 | 289 | 181 | 467 | 3.11e-57 | 204 |
| MS.gene81425.t1 | AT2G42810 | 39.792 | 289 | 165 | 6 | 8 | 289 | 181 | 467 | 3.11e-57 | 204 |
| MS.gene81425.t1 | AT2G42810 | 39.792 | 289 | 165 | 6 | 8 | 289 | 181 | 467 | 3.11e-57 | 204 |
| MS.gene81425.t1 | AT2G42810 | 39.792 | 289 | 165 | 6 | 8 | 289 | 234 | 520 | 7.55e-57 | 204 |
| MS.gene81425.t1 | AT2G42810 | 39.792 | 289 | 165 | 6 | 8 | 289 | 235 | 521 | 7.78e-57 | 204 |
| MS.gene81425.t1 | AT4G03080 | 42.593 | 270 | 138 | 6 | 17 | 271 | 550 | 817 | 9.58e-57 | 211 |
| MS.gene81425.t1 | AT1G03445 | 41.509 | 265 | 139 | 7 | 21 | 271 | 480 | 742 | 2.38e-53 | 199 |
| MS.gene81425.t1 | AT1G03445 | 41.509 | 265 | 139 | 7 | 21 | 271 | 480 | 742 | 2.46e-53 | 199 |
| MS.gene81425.t1 | AT2G27210 | 40.959 | 271 | 147 | 5 | 20 | 277 | 678 | 948 | 9.15e-52 | 196 |
| MS.gene81425.t1 | AT2G27210 | 40.959 | 271 | 147 | 5 | 20 | 277 | 673 | 943 | 1.02e-51 | 196 |
| MS.gene81425.t1 | AT1G08420 | 40.590 | 271 | 148 | 5 | 20 | 277 | 689 | 959 | 8.38e-51 | 194 |
| MS.gene81425.t1 | AT1G08420 | 40.590 | 271 | 148 | 5 | 20 | 277 | 684 | 954 | 9.27e-51 | 193 |
| MS.gene81425.t1 | AT5G63870 | 33.232 | 328 | 151 | 12 | 24 | 286 | 52 | 376 | 6.59e-36 | 141 |
| MS.gene81425.t1 | AT5G63870 | 33.232 | 328 | 151 | 12 | 24 | 286 | 52 | 376 | 6.59e-36 | 141 |
| MS.gene81425.t1 | AT5G63870 | 37.603 | 242 | 106 | 9 | 24 | 223 | 52 | 290 | 7.38e-34 | 132 |
| MS.gene81425.t1 | AT1G48120 | 30.769 | 299 | 146 | 8 | 22 | 260 | 628 | 925 | 4.49e-25 | 112 |
| MS.gene81425.t1 | AT5G10900 | 29.675 | 246 | 145 | 8 | 17 | 237 | 191 | 433 | 2.64e-22 | 102 |
| MS.gene81425.t1 | AT5G10900 | 29.487 | 234 | 137 | 8 | 29 | 237 | 203 | 433 | 2.76e-22 | 102 |
| MS.gene81425.t1 | AT5G10900 | 29.487 | 234 | 137 | 8 | 29 | 237 | 203 | 433 | 2.86e-22 | 102 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTGAAATGGAGCAAAAT+AGG | 0.230186 | 5.2:-79292078 | MS.gene81425:CDS |
| TGTAGTGATGTTACCTTCTT+AGG | 0.236421 | 5.2:-79291615 | MS.gene81425:CDS |
| GGTATTGATGTTGTTGTTTC+GGG | 0.238548 | 5.2:-79295293 | MS.gene81425:CDS |
| AATGATATATTTATCATCTT+TGG | 0.259145 | 5.2:+79293896 | None:intergenic |
| AACATCAATGATTAAATCTA+TGG | 0.259664 | 5.2:+79292385 | None:intergenic |
| TTTGGTGGCAGTGTTGTTAC+TGG | 0.261554 | 5.2:-79298207 | MS.gene81425:CDS |
| AGATTTAATCATTGATGTTT+TGG | 0.273874 | 5.2:-79292381 | MS.gene81425:CDS |
| TTGGTTTATAAGAATATCTT+TGG | 0.282976 | 5.2:+79295463 | None:intergenic |
| TGGTAATGTAGCTGCGATTC+TGG | 0.299247 | 5.2:-79297974 | MS.gene81425:CDS |
| TCAGCTTAAGAGTTCCTTCT+TGG | 0.300610 | 5.2:+79294425 | None:intergenic |
| AAACAAATTATTTGTTCCTT+GGG | 0.304724 | 5.2:-79302246 | MS.gene81425:CDS |
| CTGCTAATTTGAGCTTGAAT+TGG | 0.315310 | 5.2:-79295265 | MS.gene81425:CDS |
| AAAACAAATTATTTGTTCCT+TGG | 0.317436 | 5.2:-79302247 | MS.gene81425:CDS |
| TGGTATTGATGTTGTTGTTT+CGG | 0.319949 | 5.2:-79295294 | MS.gene81425:CDS |
| GACGAGTGCCTTCGGAAATA+TGG | 0.322723 | 5.2:-79299511 | MS.gene81425:CDS |
| CTGACATATTTGATTACTTA+AGG | 0.325516 | 5.2:-79299462 | MS.gene81425:intron |
| GCATATATAGTCAATGTTAT+TGG | 0.326109 | 5.2:+79298173 | None:intergenic |
| ACTTCACATGAATGTAATTC+AGG | 0.329332 | 5.2:-79292052 | MS.gene81425:intron |
| TTAAGATTCATGTCATCATT+TGG | 0.333952 | 5.2:+79292470 | None:intergenic |
| CAGATCGGATAACGCTCATT+AGG | 0.335086 | 5.2:-79299695 | MS.gene81425:CDS |
| CCAGTCAGCAGTGTTCAAAA+TGG | 0.338433 | 5.2:+79292526 | None:intergenic |
| ATGTACCTGTAGCAATAATT+TGG | 0.338871 | 5.2:+79298078 | None:intergenic |
| CGTGGTGCTGGTTTCTTGTT+TGG | 0.342815 | 5.2:-79298225 | MS.gene81425:CDS |
| TGGTAATGGAAGGATATAAA+TGG | 0.342924 | 5.2:-79298137 | MS.gene81425:CDS |
| CTCTGTGATTATATCTGATA+AGG | 0.359118 | 5.2:-79295498 | MS.gene81425:CDS |
| TCCATCACTTGACAGGTATA+CGG | 0.361304 | 5.2:-79299541 | MS.gene81425:intron |
| ACCGGTTGCATGCATCTCTA+TGG | 0.362693 | 5.2:-79292342 | MS.gene81425:intron |
| AGTTCTTCATATGTTGAAAC+TGG | 0.368362 | 5.2:-79295323 | MS.gene81425:CDS |
| CCCTCTTTAACTGCGAGTTT+AGG | 0.368376 | 5.2:+79291715 | None:intergenic |
| AGATCGGATAACGCTCATTA+GGG | 0.371230 | 5.2:-79299694 | MS.gene81425:CDS |
| GAACTATAGATGCAATAGTT+TGG | 0.372428 | 5.2:+79295444 | None:intergenic |
| ATTGTACGAAACAGTCTTAC+TGG | 0.372621 | 5.2:-79292129 | MS.gene81425:CDS |
| TGCTATTTCAACATTGGATC+AGG | 0.378795 | 5.2:-79298439 | MS.gene81425:intron |
| AATATGGTTCAGTAAATGTT+TGG | 0.379546 | 5.2:-79299495 | MS.gene81425:CDS |
| GTGTGATCTGACGACTTTCA+TGG | 0.387381 | 5.2:+79299667 | None:intergenic |
| ACTTGATGAACTGCCTAATC+AGG | 0.388860 | 5.2:-79292549 | MS.gene81425:CDS |
| TCTGTTCAAGTACCTCTTGT+TGG | 0.395327 | 5.2:-79295395 | MS.gene81425:CDS |
| AGTTCTCCACATACTTGAAA+TGG | 0.397462 | 5.2:-79292089 | MS.gene81425:CDS |
| CTAATTTGAGCTTGAATTGG+AGG | 0.401429 | 5.2:-79295262 | MS.gene81425:CDS |
| TTGACTTCAGATTCCTTCAA+TGG | 0.405396 | 5.2:+79304019 | None:intergenic |
| TCTATTGAACTTGAAATCAA+TGG | 0.407616 | 5.2:-79294001 | MS.gene81425:CDS |
| CCACTATCTGAAATTCCAAC+TGG | 0.408174 | 5.2:+79295215 | None:intergenic |
| AAACAAGAAACCAGCACCAC+GGG | 0.415241 | 5.2:+79298227 | None:intergenic |
| GTTTCTATGACGAGTGCCTT+CGG | 0.417368 | 5.2:-79299519 | MS.gene81425:CDS |
| GGATATTGCTTGTATAATTG+AGG | 0.417812 | 5.2:+79292491 | None:intergenic |
| ACTTGAAATGGAGCAAAATA+GGG | 0.418073 | 5.2:-79292077 | MS.gene81425:CDS |
| GTGTTCAAAATGGCCTGATT+AGG | 0.418662 | 5.2:+79292536 | None:intergenic |
| TGAACAGATTTCTCAATTTG+TGG | 0.418746 | 5.2:+79295410 | None:intergenic |
| TTCTCCTGCTATTTCAACAT+TGG | 0.419861 | 5.2:-79298445 | MS.gene81425:CDS |
| TTTGCTCCATTTCAAGTATG+TGG | 0.423095 | 5.2:+79292083 | None:intergenic |
| AATGATTAAATCTATGGAAA+TGG | 0.423321 | 5.2:+79292391 | None:intergenic |
| TTGCTCCTGTACTATGAATC+TGG | 0.427643 | 5.2:+79295991 | None:intergenic |
| AGAGCAAAACCATTCAGAAT+TGG | 0.433195 | 5.2:+79291681 | None:intergenic |
| GAAGAGATGCGAACCATTGA+AGG | 0.435978 | 5.2:-79304032 | MS.gene81425:CDS |
| CTAATGAGCGTTATCCGATC+TGG | 0.440261 | 5.2:+79299696 | None:intergenic |
| GACATTTCTGTTTCCAGTGG+TGG | 0.441250 | 5.2:-79293923 | MS.gene81425:CDS |
| CCAGTTGGAATTTCAGATAG+TGG | 0.441606 | 5.2:-79295215 | MS.gene81425:CDS |
| TCATCTATTGAAATTGTCTT+CGG | 0.447000 | 5.2:+79294076 | None:intergenic |
| CTGAAGATATTGTGGATGGC+TGG | 0.450014 | 5.2:-79298260 | MS.gene81425:CDS |
| TAGTGGAGCTGCCACTGTTA+AGG | 0.450934 | 5.2:-79295198 | MS.gene81425:intron |
| GGAGGTATACTGTTAGTAGT+TGG | 0.451022 | 5.2:-79295244 | MS.gene81425:CDS |
| GAAGCATGAATGCAAGTCAT+AGG | 0.452946 | 5.2:-79296790 | MS.gene81425:CDS |
| AGGTTGAAGATTTGCAAGTA+GGG | 0.457056 | 5.2:-79294468 | MS.gene81425:CDS |
| GTAAAGTAGCTTACGGTGAC+AGG | 0.459189 | 5.2:+79303932 | None:intergenic |
| AATATGTTGATTACTGGATA+AGG | 0.465916 | 5.2:+79296759 | None:intergenic |
| TCTGTGATTATATCTGATAA+GGG | 0.466182 | 5.2:-79295497 | MS.gene81425:CDS |
| GGTTTGAGTCCCCGTGGTGC+TGG | 0.466408 | 5.2:-79298237 | MS.gene81425:CDS |
| GTTGCTCTATCTGCCTGTCT+AGG | 0.467674 | 5.2:+79304056 | None:intergenic |
| ACCATAGAGATGCATGCAAC+CGG | 0.470392 | 5.2:+79292341 | None:intergenic |
| CAGCCATCCACAATATCTTC+AGG | 0.472514 | 5.2:+79298261 | None:intergenic |
| TGCAGTAGATTGTCAAGTGT+TGG | 0.473504 | 5.2:+79294106 | None:intergenic |
| TTTATTATGTGTAGATATGT+GGG | 0.482339 | 5.2:-79302330 | MS.gene81425:intron |
| CATCTTTGGTAAACCACCAC+TGG | 0.486684 | 5.2:+79293910 | None:intergenic |
| ATTCCATTGCCAATTCTGAA+TGG | 0.494345 | 5.2:-79291690 | MS.gene81425:CDS |
| ACAAATGAACCTCTGAATAC+AGG | 0.494503 | 5.2:+79297049 | None:intergenic |
| TGATCCAATGTTGAAATAGC+AGG | 0.495341 | 5.2:+79298441 | None:intergenic |
| TTGAAGAAAGTAATGTTCAA+AGG | 0.498696 | 5.2:-79303964 | MS.gene81425:CDS |
| CACTACACACTGCAATCCAC+GGG | 0.499014 | 5.2:+79291631 | None:intergenic |
| CCGAGCTCATCAGTTGGTAA+TGG | 0.500833 | 5.2:-79298151 | MS.gene81425:CDS |
| TGAAGAAAGTAATGTTCAAA+GGG | 0.503089 | 5.2:-79303963 | MS.gene81425:CDS |
| TATGTTGAAACTGGTGATAC+TGG | 0.504643 | 5.2:-79295314 | MS.gene81425:CDS |
| AAGGTTGAAGATTTGCAAGT+AGG | 0.504892 | 5.2:-79294469 | MS.gene81425:CDS |
| ACCTAAACTCGCAGTTAAAG+AGG | 0.505956 | 5.2:-79291716 | MS.gene81425:CDS |
| ATAATCAGATAGTTACTGTC+TGG | 0.506188 | 5.2:-79298107 | MS.gene81425:CDS |
| TGTGTTTGATGCTGCCCCAC+AGG | 0.508629 | 5.2:-79297920 | MS.gene81425:intron |
| TCTTGTTTAACTGTGCATTA+CGG | 0.510633 | 5.2:-79296016 | MS.gene81425:CDS |
| TTTAACTGCGAGTTTAGGTA+TGG | 0.512753 | 5.2:+79291720 | None:intergenic |
| CAGCTCCAAATTATTGCTAC+AGG | 0.516403 | 5.2:-79298083 | MS.gene81425:intron |
| GAAGATATTGTGGATGGCTG+GGG | 0.521686 | 5.2:-79298258 | MS.gene81425:CDS |
| GCTTGTATAATTGAGGAATG+AGG | 0.524750 | 5.2:+79292498 | None:intergenic |
| CATGCATTTCCTGTATTCAG+AGG | 0.529033 | 5.2:-79297058 | MS.gene81425:CDS |
| TGATGTCTATCAAAATCACT+TGG | 0.529148 | 5.2:-79296993 | MS.gene81425:CDS |
| TGTTTCTGTATCTTCTCCAC+CGG | 0.530355 | 5.2:-79292447 | MS.gene81425:CDS |
| TGAAGATATTGTGGATGGCT+GGG | 0.534107 | 5.2:-79298259 | MS.gene81425:CDS |
| GAGAGATGTCAGACCTAGAC+AGG | 0.540434 | 5.2:-79304069 | None:intergenic |
| AGTAGTTGGTTAATCCCAGT+TGG | 0.540626 | 5.2:-79295230 | MS.gene81425:CDS |
| AACAAATTATTTGTTCCTTG+GGG | 0.541769 | 5.2:-79302245 | MS.gene81425:CDS |
| CCTAAACTCGCAGTTAAAGA+GGG | 0.544377 | 5.2:-79291715 | MS.gene81425:CDS |
| GGAAGCTGGTGAAGTCATAC+CGG | 0.545934 | 5.2:-79292360 | MS.gene81425:CDS |
| AAGATAGTAGTCTCCTAAGA+AGG | 0.546375 | 5.2:+79291602 | None:intergenic |
| ATAGAAGAATTACTCAGCAC+AGG | 0.549547 | 5.2:+79294019 | None:intergenic |
| TTCTTCAACAAGGATTTCGA+TGG | 0.555002 | 5.2:+79303979 | None:intergenic |
| TTAGATTACGGATGTGATGT+TGG | 0.558725 | 5.2:-79294397 | MS.gene81425:CDS |
| TCACTACACACTGCAATCCA+CGG | 0.560167 | 5.2:+79291630 | None:intergenic |
| GGTGCTGGTTTCTTGTTTGG+TGG | 0.563297 | 5.2:-79298222 | MS.gene81425:CDS |
| CGGTGCCAGATTCATAGTAC+AGG | 0.563947 | 5.2:-79295996 | MS.gene81425:CDS |
| GCGAGTTTAGGTATGGTATG+AGG | 0.566224 | 5.2:+79291727 | None:intergenic |
| TAAAGTAGCTTACGGTGACA+GGG | 0.567976 | 5.2:+79303933 | None:intergenic |
| TAGATATGTGGGGATATTCA+CGG | 0.568875 | 5.2:-79302319 | MS.gene81425:CDS |
| GTGCCATGTGTGACCTCCTA+TGG | 0.570229 | 5.2:-79298290 | MS.gene81425:CDS |
| CTTCAGGATCTGACCATAGG+AGG | 0.571711 | 5.2:+79298277 | None:intergenic |
| AGATGAACGGTGGAGCAGCT+TGG | 0.573285 | 5.2:-79294360 | MS.gene81425:CDS |
| GTCAGATCCTGAAGATATTG+TGG | 0.574883 | 5.2:-79298268 | MS.gene81425:CDS |
| CACTATCTGAAATTCCAACT+GGG | 0.576851 | 5.2:+79295216 | None:intergenic |
| TATAGTCAATGTTATTGGTG+TGG | 0.577194 | 5.2:+79298178 | None:intergenic |
| AAAGTGTCAGATCAAGATGT+AGG | 0.577405 | 5.2:-79292419 | MS.gene81425:CDS |
| CCATTACCAACTGATGAGCT+CGG | 0.585713 | 5.2:+79298151 | None:intergenic |
| CAAACAAGAAACCAGCACCA+CGG | 0.587533 | 5.2:+79298226 | None:intergenic |
| AACTATTGATAGAAAGCAAG+AGG | 0.588375 | 5.2:-79298325 | MS.gene81425:CDS |
| TTTCTAAGAAAATAAGAGAA+GGG | 0.589274 | 5.2:-79294132 | MS.gene81425:CDS |
| GTTTCTAAGAAAATAAGAGA+AGG | 0.595349 | 5.2:-79294133 | MS.gene81425:CDS |
| GCTCATCAGTTGGTAATGGA+AGG | 0.596917 | 5.2:-79298147 | MS.gene81425:CDS |
| TACGAAACAGTCTTACTGGT+CGG | 0.597442 | 5.2:-79292125 | MS.gene81425:CDS |
| TATCTTCAGGATCTGACCAT+AGG | 0.598419 | 5.2:+79298274 | None:intergenic |
| AAACCATTCAGAATTGGCAA+TGG | 0.603869 | 5.2:+79291687 | None:intergenic |
| ATCAGGTGAGATATCCAGAT+CGG | 0.605328 | 5.2:-79299710 | MS.gene81425:intron |
| CAGAAATGTCAGATCTTCTG+TGG | 0.605337 | 5.2:+79293936 | None:intergenic |
| TCTGACATTTCTGTTTCCAG+TGG | 0.606826 | 5.2:-79293926 | MS.gene81425:CDS |
| TTACTGAACCATATTTCCGA+AGG | 0.609307 | 5.2:+79299503 | None:intergenic |
| CTCTATCAACAAAATCCCCA+AGG | 0.610370 | 5.2:+79302230 | None:intergenic |
| TTATTATGTGTAGATATGTG+GGG | 0.611235 | 5.2:-79302329 | MS.gene81425:intron |
| GATCTTCTGTGGTAAACTTG+AGG | 0.611391 | 5.2:+79293947 | None:intergenic |
| CTCAGGCAGATGCTTTGCAA+TGG | 0.611869 | 5.2:-79292574 | MS.gene81425:intron |
| GAAAGAAATATTTAGAGCAG+CGG | 0.616612 | 5.2:+79294051 | None:intergenic |
| GTTTAGGTATGGTATGAGGA+CGG | 0.617829 | 5.2:+79291731 | None:intergenic |
| TATTAGTGCTTCGTGTGATG+CGG | 0.622789 | 5.2:-79292154 | MS.gene81425:CDS |
| GTAAATTTAAAGAACCAAGA+AGG | 0.627783 | 5.2:-79294439 | MS.gene81425:CDS |
| CAGAAAGTAATACAAACACA+TGG | 0.633617 | 5.2:-79297023 | MS.gene81425:CDS |
| TGACCATAGGAGGTCACACA+TGG | 0.639067 | 5.2:+79298287 | None:intergenic |
| GGCTGGGGTTTGAGTCCCCG+TGG | 0.645059 | 5.2:-79298243 | MS.gene81425:CDS |
| AAGCAAGAGGTACCTCATGA+CGG | 0.645427 | 5.2:-79298312 | MS.gene81425:CDS |
| TTGTTAAAGAGCATTTCACT+CGG | 0.646405 | 5.2:-79296960 | MS.gene81425:intron |
| TCACACATGGCACCGTCATG+AGG | 0.646416 | 5.2:+79298300 | None:intergenic |
| ACTTACTGCGAAGTAAACTT+CGG | 0.650632 | 5.2:+79293847 | None:intergenic |
| TATATGCCGAGCTCATCAGT+TGG | 0.653349 | 5.2:-79298157 | MS.gene81425:CDS |
| GCTGCGATTCTGGAGTTAGA+CGG | 0.654007 | 5.2:-79297964 | MS.gene81425:CDS |
| CTAAACTCGCAGTTAAAGAG+GGG | 0.657720 | 5.2:-79291714 | MS.gene81425:CDS |
| GATCGGATAACGCTCATTAG+GGG | 0.658870 | 5.2:-79299693 | MS.gene81425:CDS |
| GAACATTACTTTCTTCAACA+AGG | 0.660079 | 5.2:+79303969 | None:intergenic |
| GAATTATCTATAAAGATGAA+CGG | 0.664383 | 5.2:-79294373 | MS.gene81425:CDS |
| GATCCTGAAGATATTGTGGA+TGG | 0.671179 | 5.2:-79298264 | MS.gene81425:CDS |
| AAAGTAGCTTACGGTGACAG+GGG | 0.690351 | 5.2:+79303934 | None:intergenic |
| TTAACACAATACCTTAACAG+TGG | 0.704014 | 5.2:+79295187 | None:intergenic |
| ACTACACACTGCAATCCACG+GGG | 0.707016 | 5.2:+79291632 | None:intergenic |
| TTATCTATAAAGATGAACGG+TGG | 0.708647 | 5.2:-79294370 | MS.gene81425:CDS |
| AACAAGAAACCAGCACCACG+GGG | 0.719181 | 5.2:+79298228 | None:intergenic |
| TGAAAGTCGTCAGATCACAC+AGG | 0.735439 | 5.2:-79299664 | MS.gene81425:intron |
| ACTTTGCCAACAAACCTGTG+GGG | 0.785006 | 5.2:+79297906 | None:intergenic |
| CTACACACTGCAATCCACGG+GGG | 0.835084 | 5.2:+79291633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 79291575 | 79304086 | 79291575 | ID=MS.gene81425 |
| chr5.2 | mRNA | 79291575 | 79304086 | 79291575 | ID=MS.gene81425.t1;Parent=MS.gene81425 |
| chr5.2 | exon | 79303946 | 79304086 | 79303946 | ID=MS.gene81425.t1.exon1;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79303946 | 79304086 | 79303946 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79302186 | 79302338 | 79302186 | ID=MS.gene81425.t1.exon2;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79302186 | 79302338 | 79302186 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79299665 | 79299727 | 79299665 | ID=MS.gene81425.t1.exon3;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79299665 | 79299727 | 79299665 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79299463 | 79299548 | 79299463 | ID=MS.gene81425.t1.exon4;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79299463 | 79299548 | 79299463 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79298440 | 79298515 | 79298440 | ID=MS.gene81425.t1.exon5;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79298440 | 79298515 | 79298440 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79298084 | 79298352 | 79298084 | ID=MS.gene81425.t1.exon6;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79298084 | 79298352 | 79298084 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79297921 | 79297999 | 79297921 | ID=MS.gene81425.t1.exon7;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79297921 | 79297999 | 79297921 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79296961 | 79297136 | 79296961 | ID=MS.gene81425.t1.exon8;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79296961 | 79297136 | 79296961 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79296773 | 79296838 | 79296773 | ID=MS.gene81425.t1.exon9;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79296773 | 79296838 | 79296773 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79295984 | 79296045 | 79295984 | ID=MS.gene81425.t1.exon10;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79295984 | 79296045 | 79295984 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79295199 | 79295530 | 79295199 | ID=MS.gene81425.t1.exon11;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79295199 | 79295530 | 79295199 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79294349 | 79294488 | 79294349 | ID=MS.gene81425.t1.exon12;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79294349 | 79294488 | 79294349 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79293853 | 79294204 | 79293853 | ID=MS.gene81425.t1.exon13;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79293853 | 79294204 | 79293853 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79292343 | 79292591 | 79292343 | ID=MS.gene81425.t1.exon14;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79292343 | 79292591 | 79292343 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79292053 | 79292178 | 79292053 | ID=MS.gene81425.t1.exon15;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79292053 | 79292178 | 79292053 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| chr5.2 | exon | 79291575 | 79291778 | 79291575 | ID=MS.gene81425.t1.exon16;Parent=MS.gene81425.t1 |
| chr5.2 | CDS | 79291575 | 79291778 | 79291575 | ID=cds.MS.gene81425.t1;Parent=MS.gene81425.t1 |
| Gene Sequence |
| Protein sequence |