Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052459.t1 | KEH27129.1 | 97.8 | 407 | 9 | 0 | 1 | 407 | 1 | 407 | 5.50E-235 | 823.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052459.t1 | Q9SVQ1 | 67.7 | 384 | 121 | 2 | 13 | 396 | 21 | 401 | 7.4e-156 | 551.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052459.t1 | A0A072UBE4 | 97.8 | 407 | 9 | 0 | 1 | 407 | 1 | 407 | 3.9e-235 | 823.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene052459 | 0.80506 | 1.60E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene052459 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene052459 | 0.81057 | 1.08E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene052459 | 0.818107 | 2.33E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene052459 | 0.804801 | 1.81E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene052516 | 0.816111 | 6.54E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene052561 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene05549 | 0.912057 | 3.01E-83 | -1.69E-46 |
| MS.gene052459 | MS.gene059842 | 0.808205 | 3.47E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene062042 | 0.828477 | 8.80E-55 | -1.69E-46 |
| MS.gene052459 | MS.gene06303 | 0.803041 | 4.21E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene063058 | 0.820718 | 5.92E-53 | -1.69E-46 |
| MS.gene052459 | MS.gene063059 | 0.803646 | 3.16E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene063060 | 0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene063149 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene052459 | MS.gene064243 | 0.801829 | 7.49E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene065825 | 0.800666 | 1.30E-48 | -1.69E-46 |
| MS.gene052459 | MS.gene066105 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene066436 | 0.80431 | 2.30E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene068924 | 0.815793 | 7.71E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene071247 | 0.804175 | 2.45E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene072561 | 0.809493 | 1.84E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene08184 | 0.804426 | 2.17E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene24445 | 0.817579 | 3.07E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene26659 | 0.807643 | 4.57E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene28606 | 0.808393 | 3.17E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene31648 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene052459 | MS.gene33135 | 0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene34286 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene38303 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene39143 | 0.824503 | 7.79E-54 | -1.69E-46 |
| MS.gene052459 | MS.gene39554 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene44404 | 0.80246 | 5.55E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene44631 | 0.824433 | 8.09E-54 | -1.69E-46 |
| MS.gene052459 | MS.gene45281 | 0.823571 | 1.29E-53 | -1.69E-46 |
| MS.gene052459 | MS.gene45624 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene51384 | 0.808593 | 2.87E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene51788 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene052459 | MS.gene51789 | 0.831006 | 2.13E-55 | -1.69E-46 |
| MS.gene052459 | MS.gene51818 | 0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene53064 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene60163 | 0.807213 | 5.64E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene61384 | 0.886149 | 4.39E-72 | -1.69E-46 |
| MS.gene052459 | MS.gene66625 | 0.803592 | 3.24E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene66928 | 0.811164 | 8.03E-51 | -1.69E-46 |
| MS.gene052459 | MS.gene70398 | 0.806694 | 7.26E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene71576 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene052459 | MS.gene72400 | 0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene76305 | -0.82184 | 3.26E-53 | -1.69E-46 |
| MS.gene052459 | MS.gene77370 | 0.809728 | 1.64E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene80687 | 0.801914 | 7.19E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene81425 | 0.800476 | 1.42E-48 | -1.69E-46 |
| MS.gene052459 | MS.gene81678 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene82806 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene86140 | 0.83701 | 6.69E-57 | -1.69E-46 |
| MS.gene052459 | MS.gene86844 | 0.806475 | 8.08E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene90370 | 0.808114 | 3.63E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene90525 | 0.82259 | 2.18E-53 | -1.69E-46 |
| MS.gene052459 | MS.gene90610 | 0.808458 | 3.07E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene90856 | 0.804117 | 2.52E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene91361 | 0.820946 | 5.24E-53 | -1.69E-46 |
| MS.gene052459 | MS.gene93418 | 0.821286 | 4.38E-53 | -1.69E-46 |
| MS.gene052459 | MS.gene95624 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene95698 | 0.827965 | 1.17E-54 | -1.69E-46 |
| MS.gene052459 | MS.gene98394 | 0.824234 | 9.01E-54 | -1.69E-46 |
| MS.gene052459 | MS.gene98990 | 0.840188 | 1.01E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052459.t1 | MTR_6g086870 | 97.549 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
| MS.gene052459.t1 | MTR_1g008380 | 68.380 | 389 | 119 | 2 | 13 | 401 | 35 | 419 | 0.0 | 561 |
| MS.gene052459.t1 | MTR_3g109520 | 67.254 | 397 | 127 | 1 | 5 | 401 | 24 | 417 | 0.0 | 561 |
| MS.gene052459.t1 | MTR_1g011630 | 60.406 | 394 | 148 | 3 | 12 | 405 | 8 | 393 | 0.0 | 512 |
| MS.gene052459.t1 | MTR_1g069275 | 59.548 | 398 | 154 | 4 | 4 | 400 | 9 | 400 | 1.37e-176 | 499 |
| MS.gene052459.t1 | MTR_1g046230 | 58.247 | 388 | 160 | 2 | 13 | 400 | 17 | 402 | 9.03e-176 | 497 |
| MS.gene052459.t1 | MTR_7g099330 | 56.533 | 398 | 161 | 4 | 4 | 400 | 9 | 395 | 5.08e-168 | 477 |
| MS.gene052459.t1 | MTR_7g099160 | 54.459 | 314 | 132 | 3 | 88 | 400 | 213 | 516 | 7.78e-121 | 361 |
| MS.gene052459.t1 | MTR_8g432640 | 44.063 | 379 | 203 | 3 | 21 | 398 | 7 | 377 | 5.51e-118 | 348 |
| MS.gene052459.t1 | MTR_7g107690 | 44.180 | 378 | 202 | 4 | 21 | 397 | 9 | 378 | 1.09e-117 | 348 |
| MS.gene052459.t1 | MTR_5g033260 | 45.669 | 381 | 196 | 4 | 21 | 399 | 7 | 378 | 2.13e-116 | 345 |
| MS.gene052459.t1 | MTR_7g107710 | 46.950 | 377 | 189 | 6 | 21 | 395 | 7 | 374 | 1.99e-115 | 342 |
| MS.gene052459.t1 | MTR_3g088925 | 43.490 | 384 | 208 | 3 | 21 | 403 | 8 | 383 | 4.07e-112 | 334 |
| MS.gene052459.t1 | MTR_3g088945 | 43.229 | 384 | 209 | 3 | 21 | 403 | 8 | 383 | 2.53e-111 | 332 |
| MS.gene052459.t1 | MTR_3g088955 | 43.490 | 384 | 208 | 3 | 21 | 403 | 8 | 383 | 2.78e-111 | 332 |
| MS.gene052459.t1 | MTR_4g051642 | 43.702 | 389 | 206 | 5 | 21 | 408 | 8 | 384 | 9.78e-111 | 331 |
| MS.gene052459.t1 | MTR_3g096030 | 38.798 | 183 | 83 | 3 | 18 | 199 | 4 | 158 | 7.06e-36 | 129 |
| MS.gene052459.t1 | MTR_3g437580 | 24.658 | 219 | 129 | 8 | 22 | 207 | 15 | 230 | 5.11e-13 | 70.1 |
| MS.gene052459.t1 | MTR_3g437580 | 24.658 | 219 | 129 | 8 | 22 | 207 | 15 | 230 | 1.41e-12 | 69.3 |
| MS.gene052459.t1 | MTR_8g037910 | 25.822 | 213 | 125 | 7 | 22 | 208 | 6 | 211 | 2.92e-12 | 67.0 |
| MS.gene052459.t1 | MTR_8g037910 | 25.822 | 213 | 125 | 7 | 22 | 208 | 6 | 211 | 4.58e-12 | 67.0 |
| MS.gene052459.t1 | MTR_8g037880 | 25.352 | 213 | 127 | 7 | 22 | 208 | 6 | 212 | 1.01e-11 | 66.6 |
| MS.gene052459.t1 | MTR_8g037910 | 25.822 | 213 | 125 | 7 | 22 | 208 | 6 | 211 | 1.07e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052459.t1 | AT4G13260 | 67.532 | 385 | 122 | 2 | 12 | 396 | 20 | 401 | 0.0 | 553 |
| MS.gene052459.t1 | AT5G25620 | 63.433 | 402 | 140 | 2 | 1 | 400 | 13 | 409 | 0.0 | 542 |
| MS.gene052459.t1 | AT5G25620 | 63.433 | 402 | 140 | 2 | 1 | 400 | 13 | 409 | 0.0 | 542 |
| MS.gene052459.t1 | AT5G11320 | 58.673 | 392 | 152 | 2 | 8 | 399 | 5 | 386 | 2.89e-175 | 495 |
| MS.gene052459.t1 | AT1G04610 | 58.763 | 388 | 159 | 1 | 13 | 400 | 30 | 416 | 3.52e-173 | 491 |
| MS.gene052459.t1 | AT4G32540 | 56.250 | 400 | 165 | 3 | 2 | 400 | 3 | 393 | 5.96e-169 | 479 |
| MS.gene052459.t1 | AT4G32540 | 56.219 | 402 | 164 | 4 | 2 | 400 | 3 | 395 | 3.93e-167 | 475 |
| MS.gene052459.t1 | AT5G43890 | 56.298 | 389 | 166 | 3 | 13 | 400 | 18 | 403 | 2.17e-166 | 473 |
| MS.gene052459.t1 | AT4G28720 | 54.430 | 395 | 177 | 3 | 13 | 406 | 18 | 410 | 7.16e-166 | 472 |
| MS.gene052459.t1 | AT1G04180 | 56.555 | 389 | 162 | 4 | 13 | 400 | 18 | 400 | 1.15e-165 | 471 |
| MS.gene052459.t1 | AT2G33230 | 57.990 | 388 | 161 | 1 | 13 | 400 | 25 | 410 | 4.88e-165 | 470 |
| MS.gene052459.t1 | AT5G11320 | 58.284 | 338 | 132 | 1 | 8 | 345 | 5 | 333 | 4.57e-149 | 427 |
| MS.gene052459.t1 | AT4G13260 | 67.123 | 292 | 93 | 2 | 106 | 397 | 11 | 299 | 8.01e-142 | 407 |
| MS.gene052459.t1 | AT4G13260 | 64.626 | 294 | 101 | 2 | 12 | 305 | 20 | 310 | 9.21e-142 | 406 |
| MS.gene052459.t1 | AT1G21430 | 46.579 | 380 | 189 | 6 | 21 | 397 | 10 | 378 | 6.83e-121 | 356 |
| MS.gene052459.t1 | AT1G48910 | 42.969 | 384 | 210 | 3 | 21 | 403 | 6 | 381 | 1.34e-116 | 345 |
| MS.gene052459.t1 | AT1G19250 | 23.684 | 380 | 211 | 16 | 22 | 336 | 15 | 380 | 6.39e-14 | 73.9 |
| MS.gene052459.t1 | AT5G61290 | 26.941 | 219 | 127 | 6 | 22 | 209 | 18 | 234 | 8.01e-14 | 73.2 |
| MS.gene052459.t1 | AT1G65860 | 23.744 | 219 | 126 | 6 | 22 | 208 | 15 | 224 | 5.70e-13 | 70.9 |
| MS.gene052459.t1 | AT5G45180 | 23.580 | 352 | 206 | 16 | 22 | 336 | 15 | 340 | 2.39e-12 | 68.9 |
| MS.gene052459.t1 | AT1G62560 | 22.222 | 216 | 134 | 5 | 22 | 208 | 15 | 225 | 2.41e-12 | 68.6 |
| MS.gene052459.t1 | AT1G62560 | 22.222 | 216 | 134 | 5 | 22 | 208 | 15 | 225 | 3.15e-12 | 68.6 |
Find 80 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTATGTGGTTGCTTAAA+TGG | 0.146621 | 6.1:+75700021 | MS.gene052459:CDS |
| ATCTTGCCACAACAAATATT+TGG | 0.151089 | 6.1:+75699981 | MS.gene052459:CDS |
| TTGATGTTGTTTGTGGATTT+TGG | 0.180380 | 6.1:+75697934 | MS.gene052459:CDS |
| TTATTGAATATTTATGTAAA+TGG | 0.192064 | 6.1:+75698000 | MS.gene052459:CDS |
| CTTGGAGATACATCTCAATT+TGG | 0.240393 | 6.1:+75700095 | MS.gene052459:CDS |
| GTAAAATCAATATTGGTTTC+AGG | 0.248308 | 6.1:+75697612 | MS.gene052459:CDS |
| CTAATGTCAGATCTTATTCT+TGG | 0.255630 | 6.1:+75700077 | MS.gene052459:CDS |
| AATCAAAACTGGCAAAATTA+AGG | 0.280803 | 6.1:+75700202 | MS.gene052459:CDS |
| TCAAAACCTATGATAGATTA+AGG | 0.300700 | 6.1:+75697751 | MS.gene052459:CDS |
| TTCAGGCATGGAGGTTTGTT+TGG | 0.304733 | 6.1:+75698172 | MS.gene052459:CDS |
| GTGGTGGGGTGTGGAAATTC+AGG | 0.309535 | 6.1:+75698155 | MS.gene052459:CDS |
| GGACCAGCTCCAACTATAAT+TGG | 0.317043 | 6.1:-75697636 | None:intergenic |
| TACAAACTAGTATGCAAAAT+TGG | 0.319837 | 6.1:-75698095 | None:intergenic |
| TTTCTCCTTTCCATCCATTT+GGG | 0.321282 | 6.1:-75702056 | None:intergenic |
| CAATGTACCCACTTGGTTAA+AGG | 0.324458 | 6.1:+75701300 | MS.gene052459:CDS |
| GGATATGATGGTAACCCTTT+TGG | 0.329198 | 6.1:-75697819 | None:intergenic |
| TAGCATAGTAAAATCAATAT+TGG | 0.331896 | 6.1:+75697605 | MS.gene052459:CDS |
| CTAAACAATTAGCTCTTTCA+AGG | 0.332301 | 6.1:-75697713 | None:intergenic |
| GCAGCATGTCTTAAACAAAA+AGG | 0.336756 | 6.1:+75697675 | MS.gene052459:CDS |
| GTACGGCAAGACACCTGTTT+TGG | 0.342983 | 6.1:+75700160 | MS.gene052459:CDS |
| ATATTTGGGAAATCAACTTT+TGG | 0.368442 | 6.1:+75699996 | MS.gene052459:CDS |
| GGAAGTTGACAAAATTGCTT+TGG | 0.369775 | 6.1:-75697783 | None:intergenic |
| GCTGAATTTGATGTTGTTTG+TGG | 0.371638 | 6.1:+75697927 | MS.gene052459:CDS |
| TCTTGCCACAACAAATATTT+GGG | 0.374850 | 6.1:+75699982 | MS.gene052459:CDS |
| CCATTTGGGAACGGTTTCCT+TGG | 0.378581 | 6.1:-75702042 | None:intergenic |
| ATGAAGCCTTAATCTATCAT+AGG | 0.395063 | 6.1:-75697757 | None:intergenic |
| TGTTCCATCCCTTCAATTTG+AGG | 0.407826 | 6.1:-75698062 | None:intergenic |
| AATACAGTGGAATTTGTTGA+TGG | 0.421286 | 6.1:+75701229 | MS.gene052459:CDS |
| CTCTTATGCCATTTCCAAAA+GGG | 0.422373 | 6.1:+75697805 | MS.gene052459:CDS |
| CCTCTTATGCCATTTCCAAA+AGG | 0.423790 | 6.1:+75697804 | MS.gene052459:CDS |
| CTAAGGATGGATGAGCATTA+TGG | 0.423920 | 6.1:-75698205 | None:intergenic |
| GTTTCAGGACCAATTATAGT+TGG | 0.432090 | 6.1:+75697627 | MS.gene052459:CDS |
| TTCACTAAACGTGGGTTGCT+TGG | 0.432993 | 6.1:+75702099 | MS.gene052459:CDS |
| TGTTGCTTTGTTGGATATGA+TGG | 0.433600 | 6.1:-75697831 | None:intergenic |
| CCAAGGAAACCGTTCCCAAA+TGG | 0.436893 | 6.1:+75702042 | MS.gene052459:CDS |
| ACAGTAGCTCAAATCAAAAC+TGG | 0.443872 | 6.1:+75700191 | MS.gene052459:CDS |
| GATGCTATCATTCTAGCTAC+TGG | 0.448404 | 6.1:+75701268 | MS.gene052459:CDS |
| TAATGCTCATCCATCCTTAG+TGG | 0.456388 | 6.1:+75698208 | MS.gene052459:CDS |
| CAGAAGATATTGAAACTAGC+TGG | 0.460121 | 6.1:+75702148 | MS.gene052459:CDS |
| AAATGGATGGAAAGGAGAAA+AGG | 0.461272 | 6.1:+75702059 | MS.gene052459:CDS |
| ATAGTTGGAGCTGGTCCCTC+AGG | 0.471984 | 6.1:+75697642 | MS.gene052459:CDS |
| TATATACGTGTAGGTTTGCA+AGG | 0.483343 | 6.1:+75701186 | MS.gene052459:intron |
| TCTAATTCATACAAGTGGCT+TGG | 0.484263 | 6.1:-75702184 | None:intergenic |
| AACTAGCTGGAAATCTGTTA+AGG | 0.485182 | 6.1:+75702161 | MS.gene052459:CDS |
| CCTTTCCATCCATTTGGGAA+CGG | 0.497265 | 6.1:-75702051 | None:intergenic |
| GAAGTTGTGCCTCAAATTGA+AGG | 0.497449 | 6.1:+75698053 | MS.gene052459:CDS |
| GAAGGGATGGAACAATTTCA+AGG | 0.500090 | 6.1:+75698071 | MS.gene052459:CDS |
| AATGGATGGAAAGGAGAAAA+GGG | 0.503618 | 6.1:+75702060 | MS.gene052459:CDS |
| ACTGTCCCAACATCCAAAAC+AGG | 0.506565 | 6.1:-75700173 | None:intergenic |
| ATCCTTAGTGGTTAGAGATA+CGG | 0.509760 | 6.1:+75698220 | MS.gene052459:CDS |
| GCTCTTTCAAGGATTTGACT+TGG | 0.513216 | 6.1:-75697702 | None:intergenic |
| ATGAAGCACCTTTAACCAAG+TGG | 0.526407 | 6.1:-75701308 | None:intergenic |
| GGAATTTGTTGATGGGAAAG+TGG | 0.531587 | 6.1:+75701237 | MS.gene052459:CDS |
| GGACCAATTATAGTTGGAGC+TGG | 0.539189 | 6.1:+75697633 | MS.gene052459:CDS |
| GGCACATGATCATCAAAAGA+AGG | 0.539333 | 6.1:+75697581 | MS.gene052459:CDS |
| CCGTTCCCAAATGGATGGAA+AGG | 0.540578 | 6.1:+75702051 | MS.gene052459:CDS |
| GATTTCCCAAATATTTGTTG+TGG | 0.543307 | 6.1:-75699987 | None:intergenic |
| CACCGTATCTCTAACCACTA+AGG | 0.547811 | 6.1:-75698222 | None:intergenic |
| CATACTAGTTTGTATAAGAG+TGG | 0.551040 | 6.1:+75698104 | MS.gene052459:CDS |
| GACATGTTTAGTGAGAAAGA+TGG | 0.552783 | 6.1:+75702015 | MS.gene052459:CDS |
| GAAAAGGGACTATATGCTGT+TGG | 0.553034 | 6.1:+75702075 | MS.gene052459:CDS |
| GTTCATCTATTGATGCAAAG+AGG | 0.556561 | 6.1:+75702121 | MS.gene052459:CDS |
| GGAAACCGTTCCCAAATGGA+TGG | 0.562029 | 6.1:+75702046 | MS.gene052459:CDS |
| TGTGCCTCAAATTGAAGGGA+TGG | 0.564740 | 6.1:+75698058 | MS.gene052459:CDS |
| GCTGTTGGTTTCACTAAACG+TGG | 0.580511 | 6.1:+75702090 | MS.gene052459:CDS |
| ATACAGTGGAATTTGTTGAT+GGG | 0.584603 | 6.1:+75701230 | MS.gene052459:CDS |
| TGCTGCTGCTGCTAATCCTG+AGG | 0.591531 | 6.1:-75697658 | None:intergenic |
| GTATCTCTAACCACTAAGGA+TGG | 0.609523 | 6.1:-75698218 | None:intergenic |
| AAGTTGTGCCTCAAATTGAA+GGG | 0.631817 | 6.1:+75698054 | MS.gene052459:CDS |
| TGAAGCACCTTTAACCAAGT+GGG | 0.640553 | 6.1:-75701307 | None:intergenic |
| ATATACGTGTAGGTTTGCAA+GGG | 0.641719 | 6.1:+75701187 | MS.gene052459:intron |
| GTGTGGAAATTCAGGCATGG+AGG | 0.642809 | 6.1:+75698163 | MS.gene052459:CDS |
| CTAATTGTTTAGCTTCAATG+TGG | 0.650137 | 6.1:+75697724 | MS.gene052459:CDS |
| ACAGAAGCAATGTACCCACT+TGG | 0.652396 | 6.1:+75701293 | MS.gene052459:CDS |
| GGGGTGTGGAAATTCAGGCA+TGG | 0.657648 | 6.1:+75698160 | MS.gene052459:CDS |
| GCTGCTGCTGCTAATCCTGA+GGG | 0.658588 | 6.1:-75697657 | None:intergenic |
| AAATGGTTGATTGTTGCTAG+TGG | 0.673168 | 6.1:+75698017 | MS.gene052459:CDS |
| CTGTTGGTTTCACTAAACGT+GGG | 0.687223 | 6.1:+75702091 | MS.gene052459:CDS |
| ACGACTAGCACATAATACAG+TGG | 0.706423 | 6.1:+75701216 | MS.gene052459:CDS |
| TGCTAGTGGTGAAAATGCTG+AGG | 0.712690 | 6.1:+75698031 | MS.gene052459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTATTGTAAAATA+AGG | - | chr6.1:75701616-75701635 | None:intergenic | 10.0% |
| !! | CATTAAAAATCAATTATATA+AGG | + | chr6.1:75701768-75701787 | MS.gene052459:intron | 10.0% |
| !! | TTACATATAATTGATAAATA+TGG | + | chr6.1:75701346-75701365 | MS.gene052459:intron | 10.0% |
| !! | TTATTGAATATTTATGTAAA+TGG | + | chr6.1:75698000-75698019 | MS.gene052459:CDS | 10.0% |
| !! | TTGTTTATATTAAAATGATA+AGG | + | chr6.1:75699000-75699019 | MS.gene052459:intron | 10.0% |
| !!! | ATTAATTGTTTCTTATAATA+AGG | + | chr6.1:75698630-75698649 | MS.gene052459:intron | 10.0% |
| !!! | TAAAGAAAATAATCTTTTTA+GGG | - | chr6.1:75699921-75699940 | None:intergenic | 10.0% |
| !!! | TTAAAGAAAATAATCTTTTT+AGG | - | chr6.1:75699922-75699941 | None:intergenic | 10.0% |
| !! | CTTCATATAAGAATTAATTA+TGG | + | chr6.1:75700530-75700549 | MS.gene052459:intron | 15.0% |
| !! | TACATTATACTACTAAAAAA+AGG | + | chr6.1:75700943-75700962 | MS.gene052459:intron | 15.0% |
| !! | TAGAATATTAAAAATCATAG+AGG | - | chr6.1:75700707-75700726 | None:intergenic | 15.0% |
| !! | TGTTTAGTTATTTATATAGA+GGG | - | chr6.1:75700776-75700795 | None:intergenic | 15.0% |
| !! | TTGTTTAGTTATTTATATAG+AGG | - | chr6.1:75700777-75700796 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATCTTACTTAA+AGG | + | chr6.1:75697851-75697870 | MS.gene052459:CDS | 15.0% |
| !!! | TTTGATATAAATCCTATTTT+TGG | + | chr6.1:75697888-75697907 | MS.gene052459:CDS | 15.0% |
| !!! | TTTTTTATTTTTATTTGTGC+AGG | + | chr6.1:75699953-75699972 | MS.gene052459:intron | 15.0% |
| !!! | TTTTTTTAAAAACTTTGTGT+AGG | + | chr6.1:75700966-75700985 | MS.gene052459:intron | 15.0% |
| !! | AAACCAGTCTAATTTAAAAA+TGG | + | chr6.1:75698806-75698825 | MS.gene052459:intron | 20.0% |
| !! | AAATCAATTATATAAGGATG+AGG | + | chr6.1:75701774-75701793 | MS.gene052459:intron | 20.0% |
| !! | AAGAGATTTGATCTTTAATT+TGG | - | chr6.1:75699206-75699225 | None:intergenic | 20.0% |
| !! | ACTCAAGAAATTATGAAAAA+TGG | + | chr6.1:75697966-75697985 | MS.gene052459:CDS | 20.0% |
| !! | ATAAATATGGTAAATAGCAT+AGG | + | chr6.1:75701359-75701378 | MS.gene052459:intron | 20.0% |
| !! | ATTAGAGACATCAAATTTAT+AGG | + | chr6.1:75698392-75698411 | MS.gene052459:intron | 20.0% |
| !! | ATTGAAATTCATTGTGATTA+GGG | + | chr6.1:75701988-75702007 | MS.gene052459:intron | 20.0% |
| !! | GAGTTGAATAAAAAAAACTA+AGG | + | chr6.1:75700468-75700487 | MS.gene052459:intron | 20.0% |
| !! | GGATTGAAAAAAAATGAAAT+TGG | - | chr6.1:75701595-75701614 | None:intergenic | 20.0% |
| !! | GTAAATGATAAACAATTTAC+AGG | + | chr6.1:75698842-75698861 | MS.gene052459:intron | 20.0% |
| !! | TAAGATAAGTACATTAAGTT+TGG | + | chr6.1:75698959-75698978 | MS.gene052459:intron | 20.0% |
| !! | TAGCATAGTAAAATCAATAT+TGG | + | chr6.1:75697605-75697624 | MS.gene052459:CDS | 20.0% |
| !! | TATTAGACAAAATCTAATGA+TGG | - | chr6.1:75701158-75701177 | None:intergenic | 20.0% |
| !! | TCTCACATAAAATAAAGATA+AGG | + | chr6.1:75701711-75701730 | MS.gene052459:intron | 20.0% |
| !! | TGATTATGAAGATGTAAAAT+TGG | - | chr6.1:75701058-75701077 | None:intergenic | 20.0% |
| !! | TGTTAATACAATATCAAACT+AGG | - | chr6.1:75701871-75701890 | None:intergenic | 20.0% |
| !! | TTAGAGACATCAAATTTATA+GGG | + | chr6.1:75698393-75698412 | MS.gene052459:intron | 20.0% |
| !! | TTCTTAAGATTTACTTCATT+TGG | - | chr6.1:75699863-75699882 | None:intergenic | 20.0% |
| !!! | AAAAGCATGAAAAAAAAAGA+AGG | + | chr6.1:75699258-75699277 | MS.gene052459:intron | 20.0% |
| !!! | AAATGTAGAAAGTATTACAT+TGG | + | chr6.1:75699321-75699340 | MS.gene052459:intron | 20.0% |
| !!! | AATAAGATGAAAAACCATTT+TGG | - | chr6.1:75700256-75700275 | None:intergenic | 20.0% |
| !!! | ATAACATTTTTATGCTTTTG+AGG | - | chr6.1:75699364-75699383 | None:intergenic | 20.0% |
| !!! | ATGTCTCTAGTTTTTTTTTT+AGG | - | chr6.1:75701452-75701471 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTCTATCTCTATT+TGG | + | chr6.1:75701628-75701647 | MS.gene052459:intron | 20.0% |
| !!! | ATTAGCTTCTTCAAAAAAAA+TGG | + | chr6.1:75699621-75699640 | MS.gene052459:intron | 20.0% |
| !!! | ATTTTGCTTATAAAAGTGAT+CGG | - | chr6.1:75699776-75699795 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGATAATATGAAT+CGG | - | chr6.1:75700835-75700854 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr6.1:75698536-75698555 | MS.gene052459:intron | 20.0% |
| !!! | TATGGCAATTATTTCTTTTT+GGG | - | chr6.1:75699451-75699470 | None:intergenic | 20.0% |
| !!! | TGTCTCTAGTTTTTTTTTTA+GGG | - | chr6.1:75701451-75701470 | None:intergenic | 20.0% |
| !!! | TTTTTAAATTAGACTGGTTT+AGG | - | chr6.1:75698806-75698825 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTGATTAAGAC+AGG | - | chr6.1:75700325-75700344 | None:intergenic | 20.0% |
| ! | AAAAAGGTTGTTAAAGCAAA+TGG | + | chr6.1:75699489-75699508 | MS.gene052459:intron | 25.0% |
| ! | AATCAAAACTGGCAAAATTA+AGG | + | chr6.1:75700202-75700221 | MS.gene052459:CDS | 25.0% |
| ! | AATTCTCTCATATGTCAATT+GGG | + | chr6.1:75699590-75699609 | MS.gene052459:intron | 25.0% |
| ! | ATCATCTAATATATACGTGT+AGG | + | chr6.1:75701177-75701196 | MS.gene052459:intron | 25.0% |
| ! | CCGATTCATATTATCAAAAA+AGG | + | chr6.1:75700832-75700851 | MS.gene052459:intron | 25.0% |
| ! | GATTGAAATTCATTGTGATT+AGG | + | chr6.1:75701987-75702006 | MS.gene052459:intron | 25.0% |
| ! | GTAAAAGAACACTTGAAAAT+CGG | - | chr6.1:75698683-75698702 | None:intergenic | 25.0% |
| ! | TACAAACTAGTATGCAAAAT+TGG | - | chr6.1:75698098-75698117 | None:intergenic | 25.0% |
| ! | TCAAAACCTATGATAGATTA+AGG | + | chr6.1:75697751-75697770 | MS.gene052459:CDS | 25.0% |
| ! | TTAGAGCTTAAAAACTTGTA+CGG | + | chr6.1:75700143-75700162 | MS.gene052459:CDS | 25.0% |
| !! | AAAACCATTTTGGATTTGAT+TGG | - | chr6.1:75700246-75700265 | None:intergenic | 25.0% |
| !! | AATATTACACTCTATCGATT+TGG | + | chr6.1:75701820-75701839 | MS.gene052459:intron | 25.0% |
| !! | ATATTTGGGAAATCAACTTT+TGG | + | chr6.1:75699996-75700015 | MS.gene052459:CDS | 25.0% |
| !! | ATCACAAATCATTTTCTCTT+TGG | - | chr6.1:75700887-75700906 | None:intergenic | 25.0% |
| !! | TTTGCTTTAACAACCTTTTT+AGG | - | chr6.1:75699489-75699508 | None:intergenic | 25.0% |
| !!! | AAATAATCTTTTTAGGGAAC+TGG | - | chr6.1:75699915-75699934 | None:intergenic | 25.0% |
| !!! | AAGATCCATTTGTTTTTCAA+AGG | + | chr6.1:75699030-75699049 | MS.gene052459:intron | 25.0% |
| !!! | ATATTACACTCTATCGATTT+GGG | + | chr6.1:75701821-75701840 | MS.gene052459:intron | 25.0% |
| !!! | CTATGGCAATTATTTCTTTT+TGG | - | chr6.1:75699452-75699471 | None:intergenic | 25.0% |
| !!! | GATAAAAATTGTTGCTTTGT+TGG | - | chr6.1:75697843-75697862 | None:intergenic | 25.0% |
| !!! | GTAAAATCAATATTGGTTTC+AGG | + | chr6.1:75697612-75697631 | MS.gene052459:CDS | 25.0% |
| !!! | GTCAACTTTTTCTTATAACA+AGG | - | chr6.1:75698531-75698550 | None:intergenic | 25.0% |
| !!! | TACAAGTTTTTAAGCTCTAA+AGG | - | chr6.1:75700143-75700162 | None:intergenic | 25.0% |
| !!! | TGTCCATTTTTAAATTAGAC+TGG | - | chr6.1:75698812-75698831 | None:intergenic | 25.0% |
| AAAGAAGTTAGTTGTAGTGA+CGG | - | chr6.1:75698929-75698948 | None:intergenic | 30.0% | |
| ATCTTGCCACAACAAATATT+TGG | + | chr6.1:75699981-75700000 | MS.gene052459:CDS | 30.0% | |
| ATGAAGCCTTAATCTATCAT+AGG | - | chr6.1:75697760-75697779 | None:intergenic | 30.0% | |
| CAATTCTCTCATATGTCAAT+TGG | + | chr6.1:75699589-75699608 | MS.gene052459:intron | 30.0% | |
| CATACCAATCAAATCCAAAA+TGG | + | chr6.1:75700239-75700258 | MS.gene052459:intron | 30.0% | |
| CATAGGAAAGAGTTGAATTA+AGG | + | chr6.1:75701376-75701395 | MS.gene052459:intron | 30.0% | |
| CTAATGTCAGATCTTATTCT+TGG | + | chr6.1:75700077-75700096 | MS.gene052459:CDS | 30.0% | |
| CTGGTTAAGGAAACTAAAAA+AGG | - | chr6.1:75699403-75699422 | None:intergenic | 30.0% | |
| GGAATTGAAAGACCAAAAAT+TGG | + | chr6.1:75700116-75700135 | MS.gene052459:CDS | 30.0% | |
| GTGTCTACAATTTCCTAAAA+AGG | + | chr6.1:75699473-75699492 | MS.gene052459:intron | 30.0% | |
| TAACAAGTGTCTTAAACAAG+TGG | + | chr6.1:75699649-75699668 | MS.gene052459:intron | 30.0% | |
| TAGTTGACAATTTGATCACA+TGG | - | chr6.1:75700919-75700938 | None:intergenic | 30.0% | |
| TATCTATGTGGTTGCTTAAA+TGG | + | chr6.1:75700021-75700040 | MS.gene052459:CDS | 30.0% | |
| TCCACACTATTCAAAATTTC+TGG | - | chr6.1:75700606-75700625 | None:intergenic | 30.0% | |
| TCTTGCCACAACAAATATTT+GGG | + | chr6.1:75699982-75700001 | MS.gene052459:CDS | 30.0% | |
| TTCTTATAATAAGGACCGAA+GGG | + | chr6.1:75698639-75698658 | MS.gene052459:intron | 30.0% | |
| TTGAAATAGCCACACAAATT+TGG | + | chr6.1:75698318-75698337 | MS.gene052459:intron | 30.0% | |
| TTTCTTATAATAAGGACCGA+AGG | + | chr6.1:75698638-75698657 | MS.gene052459:intron | 30.0% | |
| TTTGAATATTGTCGAGTTCA+TGG | - | chr6.1:75701025-75701044 | None:intergenic | 30.0% | |
| ! | CATACTAGTTTGTATAAGAG+TGG | + | chr6.1:75698104-75698123 | MS.gene052459:CDS | 30.0% |
| ! | CCATACCTTTGAAAAACAAA+TGG | - | chr6.1:75699038-75699057 | None:intergenic | 30.0% |
| ! | CTAAACAATTAGCTCTTTCA+AGG | - | chr6.1:75697716-75697735 | None:intergenic | 30.0% |
| ! | CTAATTGTTTAGCTTCAATG+TGG | + | chr6.1:75697724-75697743 | MS.gene052459:CDS | 30.0% |
| ! | CTTTTTCTTATAACAAGGAC+CGG | - | chr6.1:75698526-75698545 | None:intergenic | 30.0% |
| ! | GATTTCCCAAATATTTGTTG+TGG | - | chr6.1:75699990-75700009 | None:intergenic | 30.0% |
| ! | TCCAGAAATTTTGAATAGTG+TGG | + | chr6.1:75700602-75700621 | MS.gene052459:intron | 30.0% |
| !! | AATACAGTGGAATTTGTTGA+TGG | + | chr6.1:75701229-75701248 | MS.gene052459:CDS | 30.0% |
| !! | ATACAGTGGAATTTGTTGAT+GGG | + | chr6.1:75701230-75701249 | MS.gene052459:CDS | 30.0% |
| !! | CCATTTGTTTTTCAAAGGTA+TGG | + | chr6.1:75699035-75699054 | MS.gene052459:intron | 30.0% |
| !! | TTGATGTTGTTTGTGGATTT+TGG | + | chr6.1:75697934-75697953 | MS.gene052459:CDS | 30.0% |
| !! | TTTTAGTTATCCTGACACAA+AGG | - | chr6.1:75699241-75699260 | None:intergenic | 30.0% |
| !!! | CAACTTTTGGTTTATCTATG+TGG | + | chr6.1:75700009-75700028 | MS.gene052459:CDS | 30.0% |
| !!! | CTTTAGTTCTTTTTAGTTCG+TGG | + | chr6.1:75698363-75698382 | MS.gene052459:intron | 30.0% |
| !!! | TTAATGTGTGTTTTGATCCA+CGG | + | chr6.1:75700354-75700373 | MS.gene052459:intron | 30.0% |
| AAATAGCCACACAAATTTGG+AGG | + | chr6.1:75698321-75698340 | MS.gene052459:intron | 35.0% | |
| AAATGGATGGAAAGGAGAAA+AGG | + | chr6.1:75702059-75702078 | MS.gene052459:CDS | 35.0% | |
| AAATGGTTGATTGTTGCTAG+TGG | + | chr6.1:75698017-75698036 | MS.gene052459:CDS | 35.0% | |
| AACTAGCTGGAAATCTGTTA+AGG | + | chr6.1:75702161-75702180 | MS.gene052459:CDS | 35.0% | |
| AAGTTGTGCCTCAAATTGAA+GGG | + | chr6.1:75698054-75698073 | MS.gene052459:CDS | 35.0% | |
| AATATTGTCGAGTTCATGGA+TGG | - | chr6.1:75701021-75701040 | None:intergenic | 35.0% | |
| AATCGGATGTGAAATCGAAT+AGG | - | chr6.1:75700818-75700837 | None:intergenic | 35.0% | |
| AATGGATGGAAAGGAGAAAA+GGG | + | chr6.1:75702060-75702079 | MS.gene052459:CDS | 35.0% | |
| ACAGTAGCTCAAATCAAAAC+TGG | + | chr6.1:75700191-75700210 | MS.gene052459:CDS | 35.0% | |
| ACCACTTGTTTGCCAAAAAT+AGG | - | chr6.1:75697903-75697922 | None:intergenic | 35.0% | |
| AGAACACTTGAAAATCGGAA+AGG | - | chr6.1:75698678-75698697 | None:intergenic | 35.0% | |
| AGGAAATTGTAGACACACTA+TGG | - | chr6.1:75699469-75699488 | None:intergenic | 35.0% | |
| ATATACGTGTAGGTTTGCAA+GGG | + | chr6.1:75701187-75701206 | MS.gene052459:intron | 35.0% | |
| ATCATAGAGGACAACTATGA+TGG | - | chr6.1:75700694-75700713 | None:intergenic | 35.0% | |
| ATCCTTAGTGGTTAGAGATA+CGG | + | chr6.1:75698220-75698239 | MS.gene052459:CDS | 35.0% | |
| ATGCAAGTTAAAGCATGTGT+GGG | - | chr6.1:75700998-75701017 | None:intergenic | 35.0% | |
| CAGAAGATATTGAAACTAGC+TGG | + | chr6.1:75702148-75702167 | MS.gene052459:CDS | 35.0% | |
| CTTGGAGATACATCTCAATT+TGG | + | chr6.1:75700095-75700114 | MS.gene052459:CDS | 35.0% | |
| CTTTGTTCTCTCACTTTCAT+TGG | + | chr6.1:75699131-75699150 | MS.gene052459:intron | 35.0% | |
| GAAAGTGAGAGAACAAAGAA+TGG | - | chr6.1:75699129-75699148 | None:intergenic | 35.0% | |
| GACATGTTTAGTGAGAAAGA+TGG | + | chr6.1:75702015-75702034 | MS.gene052459:CDS | 35.0% | |
| GCAGCATGTCTTAAACAAAA+AGG | + | chr6.1:75697675-75697694 | MS.gene052459:CDS | 35.0% | |
| GGAAAAAACAATACTCCCTT+CGG | - | chr6.1:75698657-75698676 | None:intergenic | 35.0% | |
| GGAAGTTGACAAAATTGCTT+TGG | - | chr6.1:75697786-75697805 | None:intergenic | 35.0% | |
| GTTCATCTATTGATGCAAAG+AGG | + | chr6.1:75702121-75702140 | MS.gene052459:CDS | 35.0% | |
| GTTTCAGGACCAATTATAGT+TGG | + | chr6.1:75697627-75697646 | MS.gene052459:CDS | 35.0% | |
| TATATACGTGTAGGTTTGCA+AGG | + | chr6.1:75701186-75701205 | MS.gene052459:intron | 35.0% | |
| TCATAGAGGACAACTATGAT+GGG | - | chr6.1:75700693-75700712 | None:intergenic | 35.0% | |
| TGCTTATAAAAGTGATCGGA+TGG | - | chr6.1:75699772-75699791 | None:intergenic | 35.0% | |
| TTTCTCCTTTCCATCCATTT+GGG | - | chr6.1:75702059-75702078 | None:intergenic | 35.0% | |
| ! | AAAATAAACTTTTGCCACCG+TGG | - | chr6.1:75700374-75700393 | None:intergenic | 35.0% |
| ! | AAAATTTCTGGATCTGTCAC+TGG | - | chr6.1:75700594-75700613 | None:intergenic | 35.0% |
| ! | ATGGTTCTCTGTTCATTTTG+TGG | + | chr6.1:75700040-75700059 | MS.gene052459:CDS | 35.0% |
| ! | CTCTTATGCCATTTCCAAAA+GGG | + | chr6.1:75697805-75697824 | MS.gene052459:CDS | 35.0% |
| ! | GCTGAATTTGATGTTGTTTG+TGG | + | chr6.1:75697927-75697946 | MS.gene052459:CDS | 35.0% |
| ! | TTTTCTCCTTTCCATCCATT+TGG | - | chr6.1:75702060-75702079 | None:intergenic | 35.0% |
| !! | TGTTGCTTTGTTGGATATGA+TGG | - | chr6.1:75697834-75697853 | None:intergenic | 35.0% |
| !! | TTGTGGGAAGAATGTTTTAG+TGG | + | chr6.1:75698136-75698155 | MS.gene052459:CDS | 35.0% |
| !!! | AGCTCTAAAGGACCAATTTT+TGG | - | chr6.1:75700131-75700150 | None:intergenic | 35.0% |
| !!! | TCCTATTTTTGGCAAACAAG+TGG | + | chr6.1:75697899-75697918 | MS.gene052459:CDS | 35.0% |
| ACAATATCAAACTAGGTGCG+TGG | - | chr6.1:75701864-75701883 | None:intergenic | 40.0% | |
| ACGACTAGCACATAATACAG+TGG | + | chr6.1:75701216-75701235 | MS.gene052459:CDS | 40.0% | |
| CAATGTACCCACTTGGTTAA+AGG | + | chr6.1:75701300-75701319 | MS.gene052459:CDS | 40.0% | |
| CTAAGGATGGATGAGCATTA+TGG | - | chr6.1:75698208-75698227 | None:intergenic | 40.0% | |
| GAAAAGGGACTATATGCTGT+TGG | + | chr6.1:75702075-75702094 | MS.gene052459:CDS | 40.0% | |
| GAAATCGAATAGGAGATGAC+TGG | - | chr6.1:75700808-75700827 | None:intergenic | 40.0% | |
| GAAGGGATGGAACAATTTCA+AGG | + | chr6.1:75698071-75698090 | MS.gene052459:CDS | 40.0% | |
| GAAGTTGTGCCTCAAATTGA+AGG | + | chr6.1:75698053-75698072 | MS.gene052459:CDS | 40.0% | |
| GATGCAAGTTAAAGCATGTG+TGG | - | chr6.1:75700999-75701018 | None:intergenic | 40.0% | |
| GCATAAAATCATACTCCCTC+CGG | + | chr6.1:75698504-75698523 | MS.gene052459:intron | 40.0% | |
| GCGTGGATATAAATCATAGG+CGG | - | chr6.1:75701847-75701866 | None:intergenic | 40.0% | |
| GCTCTTTCAAGGATTTGACT+TGG | - | chr6.1:75697705-75697724 | None:intergenic | 40.0% | |
| GGCACATGATCATCAAAAGA+AGG | + | chr6.1:75697581-75697600 | MS.gene052459:CDS | 40.0% | |
| GGTGCGTGGATATAAATCAT+AGG | - | chr6.1:75701850-75701869 | None:intergenic | 40.0% | |
| GTATCTCTAACCACTAAGGA+TGG | - | chr6.1:75698221-75698240 | None:intergenic | 40.0% | |
| GTGCTCTTTCTCGAAATCTT+AGG | + | chr6.1:75699564-75699583 | MS.gene052459:intron | 40.0% | |
| TAATGCTCATCCATCCTTAG+TGG | + | chr6.1:75698208-75698227 | MS.gene052459:CDS | 40.0% | |
| TGTTCCATCCCTTCAATTTG+AGG | - | chr6.1:75698065-75698084 | None:intergenic | 40.0% | |
| TTCTTATAACAAGGACCGGA+GGG | - | chr6.1:75698522-75698541 | None:intergenic | 40.0% | |
| TTGGCAACGTGGTATTTGTT+TGG | + | chr6.1:75699530-75699549 | MS.gene052459:intron | 40.0% | |
| TTTCAGCCTCCAAATTTGTG+TGG | - | chr6.1:75698330-75698349 | None:intergenic | 40.0% | |
| TTTCTTATAACAAGGACCGG+AGG | - | chr6.1:75698523-75698542 | None:intergenic | 40.0% | |
| ! | AAGAGTGGTAGCATGTTTTG+TGG | + | chr6.1:75698119-75698138 | MS.gene052459:CDS | 40.0% |
| ! | AGAGTGGTAGCATGTTTTGT+GGG | + | chr6.1:75698120-75698139 | MS.gene052459:CDS | 40.0% |
| ! | ATGAAGCACCTTTAACCAAG+TGG | - | chr6.1:75701311-75701330 | None:intergenic | 40.0% |
| ! | CCTCTTATGCCATTTCCAAA+AGG | + | chr6.1:75697804-75697823 | MS.gene052459:CDS | 40.0% |
| ! | GATGCTATCATTCTAGCTAC+TGG | + | chr6.1:75701268-75701287 | MS.gene052459:CDS | 40.0% |
| ! | GGATATGATGGTAACCCTTT+TGG | - | chr6.1:75697822-75697841 | None:intergenic | 40.0% |
| ! | GTGAGAAAGATGGTTTTCCA+AGG | + | chr6.1:75702025-75702044 | MS.gene052459:CDS | 40.0% |
| ! | GTGGTATTTGTTTGGAGTCT+GGG | + | chr6.1:75699538-75699557 | MS.gene052459:intron | 40.0% |
| ! | TGAAGCACCTTTAACCAAGT+GGG | - | chr6.1:75701310-75701329 | None:intergenic | 40.0% |
| !! | AAGACACCTGTTTTGGATGT+TGG | + | chr6.1:75700167-75700186 | MS.gene052459:CDS | 40.0% |
| !! | AGACACCTGTTTTGGATGTT+GGG | + | chr6.1:75700168-75700187 | MS.gene052459:CDS | 40.0% |
| !! | CCTTTTGGAAATGGCATAAG+AGG | - | chr6.1:75697807-75697826 | None:intergenic | 40.0% |
| !! | CTGTTGGTTTCACTAAACGT+GGG | + | chr6.1:75702091-75702110 | MS.gene052459:CDS | 40.0% |
| !! | GATGGTAACCCTTTTGGAAA+TGG | - | chr6.1:75697816-75697835 | None:intergenic | 40.0% |
| !! | GGAATTTGTTGATGGGAAAG+TGG | + | chr6.1:75701237-75701256 | MS.gene052459:CDS | 40.0% |
| !!! | GGAAGAATGTTTTAGTGGTG+GGG | + | chr6.1:75698141-75698160 | MS.gene052459:CDS | 40.0% |
| !!! | GGGAAGAATGTTTTAGTGGT+GGG | + | chr6.1:75698140-75698159 | MS.gene052459:CDS | 40.0% |
| !!! | TGGGAAGAATGTTTTAGTGG+TGG | + | chr6.1:75698139-75698158 | MS.gene052459:CDS | 40.0% |
| AAATGTTAACCGATGCCTCC+GGG | + | chr6.1:75699281-75699300 | MS.gene052459:intron | 45.0% | |
| ACAGAAGCAATGTACCCACT+TGG | + | chr6.1:75701293-75701312 | MS.gene052459:CDS | 45.0% | |
| ACTGTCCCAACATCCAAAAC+AGG | - | chr6.1:75700176-75700195 | None:intergenic | 45.0% | |
| CACCGTATCTCTAACCACTA+AGG | - | chr6.1:75698225-75698244 | None:intergenic | 45.0% | |
| CCTTTCCATCCATTTGGGAA+CGG | - | chr6.1:75702054-75702073 | None:intergenic | 45.0% | |
| GAAATGTTAACCGATGCCTC+CGG | + | chr6.1:75699280-75699299 | MS.gene052459:intron | 45.0% | |
| GGACCAATTATAGTTGGAGC+TGG | + | chr6.1:75697633-75697652 | MS.gene052459:CDS | 45.0% | |
| GGACCAGCTCCAACTATAAT+TGG | - | chr6.1:75697639-75697658 | None:intergenic | 45.0% | |
| TAGTTTCCTTAACCAGTGCC+CGG | + | chr6.1:75699407-75699426 | MS.gene052459:intron | 45.0% | |
| TGATTCCTTAATCAGTGCCC+CGG | - | chr6.1:75699302-75699321 | None:intergenic | 45.0% | |
| TGCTAGTGGTGAAAATGCTG+AGG | + | chr6.1:75698031-75698050 | MS.gene052459:CDS | 45.0% | |
| TGTGCCTCAAATTGAAGGGA+TGG | + | chr6.1:75698058-75698077 | MS.gene052459:CDS | 45.0% | |
| ! | CGTGGTATTTGTTTGGAGTC+TGG | + | chr6.1:75699537-75699556 | MS.gene052459:intron | 45.0% |
| ! | TTCACTAAACGTGGGTTGCT+TGG | + | chr6.1:75702099-75702118 | MS.gene052459:CDS | 45.0% |
| ! | TTCAGGCATGGAGGTTTGTT+TGG | + | chr6.1:75698172-75698191 | MS.gene052459:CDS | 45.0% |
| !! | GCTGTTGGTTTCACTAAACG+TGG | + | chr6.1:75702090-75702109 | MS.gene052459:CDS | 45.0% |
| !! | TCACTGGTCGAGTTGAATTG+TGG | - | chr6.1:75700578-75700597 | None:intergenic | 45.0% |
| !!! | AATGTTTTAGTGGTGGGGTG+TGG | + | chr6.1:75698146-75698165 | MS.gene052459:CDS | 45.0% |
| !!! | ATGTGTGTTTTGATCCACGG+TGG | + | chr6.1:75700357-75700376 | MS.gene052459:intron | 45.0% |
| AATGTTAACCGATGCCTCCG+GGG | + | chr6.1:75699282-75699301 | MS.gene052459:intron | 50.0% | |
| AGTTTCCTTAACCAGTGCCC+GGG | + | chr6.1:75699408-75699427 | MS.gene052459:intron | 50.0% | |
| CCAAGGAAACCGTTCCCAAA+TGG | + | chr6.1:75702042-75702061 | MS.gene052459:CDS | 50.0% | |
| CCATTTGGGAACGGTTTCCT+TGG | - | chr6.1:75702045-75702064 | None:intergenic | 50.0% | |
| CCGTTCCCAAATGGATGGAA+AGG | + | chr6.1:75702051-75702070 | MS.gene052459:CDS | 50.0% | |
| CTGCAAAGAGCCTTTGTGTC+AGG | + | chr6.1:75699228-75699247 | MS.gene052459:intron | 50.0% | |
| GGAAACCGTTCCCAAATGGA+TGG | + | chr6.1:75702046-75702065 | MS.gene052459:CDS | 50.0% | |
| GTCTCTTAACCCACTTGCGT+TGG | + | chr6.1:75699511-75699530 | MS.gene052459:intron | 50.0% | |
| GTGTGGAAATTCAGGCATGG+AGG | + | chr6.1:75698163-75698182 | MS.gene052459:CDS | 50.0% | |
| TCTTGTTAACCAGTGCTCCC+GGG | - | chr6.1:75699428-75699447 | None:intergenic | 50.0% | |
| ! | GTACGGCAAGACACCTGTTT+TGG | + | chr6.1:75700160-75700179 | MS.gene052459:CDS | 50.0% |
| ! | GTCTTGTTAACCAGTGCTCC+CGG | - | chr6.1:75699429-75699448 | None:intergenic | 50.0% |
| ACCACGTTGCCAACGCAAGT+GGG | - | chr6.1:75699523-75699542 | None:intergenic | 55.0% | |
| ATAGTTGGAGCTGGTCCCTC+AGG | + | chr6.1:75697642-75697661 | MS.gene052459:CDS | 55.0% | |
| GCTGCTGCTGCTAATCCTGA+GGG | - | chr6.1:75697660-75697679 | None:intergenic | 55.0% | |
| GGGGTGTGGAAATTCAGGCA+TGG | + | chr6.1:75698160-75698179 | MS.gene052459:CDS | 55.0% | |
| TACCACGTTGCCAACGCAAG+TGG | - | chr6.1:75699524-75699543 | None:intergenic | 55.0% | |
| TGCTGCTGCTGCTAATCCTG+AGG | - | chr6.1:75697661-75697680 | None:intergenic | 55.0% | |
| TTCCTTAATCAGTGCCCCGG+AGG | - | chr6.1:75699299-75699318 | None:intergenic | 55.0% | |
| ! | GTGGTGGGGTGTGGAAATTC+AGG | + | chr6.1:75698155-75698174 | MS.gene052459:CDS | 55.0% |
| ! | AATCAGTGCCCCGGAGGCAT+CGG | - | chr6.1:75699293-75699312 | None:intergenic | 60.0% |
| ! | ACCCACTTGCGTTGGCAACG+TGG | + | chr6.1:75699519-75699538 | MS.gene052459:intron | 60.0% |
| !! | TGCCTCCGGGGCACTGATTA+AGG | + | chr6.1:75699294-75699313 | MS.gene052459:intron | 60.0% |
| TAACCAGTGCTCCCGGGCAC+TGG | - | chr6.1:75699422-75699441 | None:intergenic | 65.0% | |
| ! | TAACCAGTGCCCGGGAGCAC+TGG | + | chr6.1:75699416-75699435 | MS.gene052459:intron | 65.0% |
| !! | GTGCTCCCGGGCACTGGTTA+AGG | - | chr6.1:75699416-75699435 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 75697579 | 75702200 | 75697579 | ID=MS.gene052459 |
| chr6.1 | mRNA | 75697579 | 75702200 | 75697579 | ID=MS.gene052459.t1;Parent=MS.gene052459 |
| chr6.1 | exon | 75697579 | 75698241 | 75697579 | ID=MS.gene052459.t1.exon1;Parent=MS.gene052459.t1 |
| chr6.1 | CDS | 75697579 | 75698241 | 75697579 | ID=cds.MS.gene052459.t1;Parent=MS.gene052459.t1 |
| chr6.1 | exon | 75699975 | 75700223 | 75699975 | ID=MS.gene052459.t1.exon2;Parent=MS.gene052459.t1 |
| chr6.1 | CDS | 75699975 | 75700223 | 75699975 | ID=cds.MS.gene052459.t1;Parent=MS.gene052459.t1 |
| chr6.1 | exon | 75701199 | 75701321 | 75701199 | ID=MS.gene052459.t1.exon3;Parent=MS.gene052459.t1 |
| chr6.1 | CDS | 75701199 | 75701321 | 75701199 | ID=cds.MS.gene052459.t1;Parent=MS.gene052459.t1 |
| chr6.1 | exon | 75702009 | 75702200 | 75702009 | ID=MS.gene052459.t1.exon4;Parent=MS.gene052459.t1 |
| chr6.1 | CDS | 75702009 | 75702200 | 75702009 | ID=cds.MS.gene052459.t1;Parent=MS.gene052459.t1 |
| Gene Sequence |
| Protein sequence |
