Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81683.t1 | XP_003616811.1 | 96.2 | 53 | 2 | 0 | 1 | 53 | 1 | 53 | 1.00E-14 | 90.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81683.t1 | Q07202 | 96.2 | 52 | 2 | 0 | 1 | 52 | 1 | 52 | 7.3e-17 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81683.t1 | G7K7D4 | 75.1 | 177 | 9 | 1 | 1 | 177 | 1 | 142 | 1.3e-14 | 89.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene81683 | 0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene81683 | 0.828828 | 7.24E-55 | -1.69E-46 |
| MS.gene050406 | MS.gene81683 | 0.851254 | 1.00E-60 | -1.69E-46 |
| MS.gene050432 | MS.gene81683 | 0.809524 | 1.81E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene81683 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene81683 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene81683 | 0.823271 | 1.52E-53 | -1.69E-46 |
| MS.gene053073 | MS.gene81683 | 0.827888 | 1.22E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene81683 | 0.817684 | 2.90E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene81683 | 0.832647 | 8.39E-56 | -1.69E-46 |
| MS.gene054327 | MS.gene81683 | 0.837533 | 4.91E-57 | -1.69E-46 |
| MS.gene055254 | MS.gene81683 | 0.801446 | 8.97E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene81683 | 0.811578 | 6.53E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene81683 | 0.822681 | 2.08E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene81683 | 0.81154 | 6.65E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene81683 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene058276 | MS.gene81683 | 0.816583 | 5.13E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene81683 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene81683 | 0.86225 | 5.79E-64 | -1.69E-46 |
| MS.gene060407 | MS.gene81683 | 0.819562 | 1.09E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene81683 | 0.835282 | 1.84E-56 | -1.69E-46 |
| MS.gene061112 | MS.gene81683 | 0.855274 | 7.04E-62 | -1.69E-46 |
| MS.gene061265 | MS.gene81683 | 0.847318 | 1.25E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81683.t1 | MTR_5g084460 | 62.009 | 229 | 76 | 2 | 1 | 218 | 1 | 229 | 3.96e-21 | 88.2 |
| MS.gene81683.t1 | MTR_5g084570 | 84.000 | 50 | 7 | 1 | 1 | 49 | 1 | 50 | 4.60e-21 | 86.7 |
| MS.gene81683.t1 | MTR_5g084540 | 74.194 | 62 | 15 | 1 | 1 | 61 | 1 | 62 | 7.00e-19 | 80.5 |
| MS.gene81683.t1 | MTR_5g084530 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 4.71e-16 | 72.0 |
| MS.gene81683.t1 | MTR_5g084470 | 92.727 | 55 | 4 | 0 | 1 | 55 | 1 | 55 | 1.28e-15 | 72.8 |
| MS.gene81683.t1 | MTR_5g084470 | 73.171 | 82 | 7 | 1 | 152 | 218 | 117 | 198 | 2.39e-13 | 66.6 |
| MS.gene81683.t1 | MTR_5g084470 | 73.171 | 82 | 7 | 1 | 152 | 218 | 128 | 209 | 2.84e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 105 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTCCACCGATGCTAAAA+AGG | 0.195603 | 5.1:-66558849 | MS.gene81683:CDS |
| GTAACTACCACCACCATATT+TGG | 0.210470 | 5.1:+66557993 | None:intergenic |
| ATGGCTGTAGCCTCCATATT+TGG | 0.280339 | 5.1:+66558359 | None:intergenic |
| TTGAACAATGGGTTCGAAAA+AGG | 0.298712 | 5.1:-66558942 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5.1:-66558372 | MS.gene81683:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.410599 | 5.1:-66558207 | MS.gene81683:CDS |
| GAAATGAATGATGCCAAATA+TGG | 0.415776 | 5.1:-66558006 | MS.gene81683:CDS |
| GGTGGAGGTCATGGTGGTCA+TGG | 0.435429 | 5.1:-66558072 | MS.gene81683:CDS |
| TACAATGGTGGTGGAGGTCA+TGG | 0.435594 | 5.1:-66558081 | MS.gene81683:CDS |
| CATGCTAACCCTCTTGGCTA+TGG | 0.456984 | 5.1:-66558912 | MS.gene81683:CDS |
| GGAGGTGGTCACGGTGGTCA+CGG | 0.459917 | 5.1:-66557901 | MS.gene81683:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.469212 | 5.1:-66558105 | MS.gene81683:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.1:-66558132 | MS.gene81683:CDS |
| AATTCTCATGCTAACCCTCT+TGG | 0.483525 | 5.1:-66558918 | MS.gene81683:CDS |
| GGACACGGTGGTCACGGTGG+AGG | 0.486069 | 5.1:-66558108 | MS.gene81683:CDS |
| GGTGGTTACCACAATGGTGG+TGG | 0.494689 | 5.1:-66558228 | MS.gene81683:CDS |
| GGTGGAGGACACGGTGGTCA+CGG | 0.494972 | 5.1:-66558114 | MS.gene81683:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.1:-66558087 | MS.gene81683:CDS |
| CATGGTTGTAACTTCCTCCA+TGG | 0.504992 | 5.1:+66557968 | None:intergenic |
| GGTGGATACAATGGTGGAGG+TGG | 0.521371 | 5.1:-66558168 | MS.gene81683:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.528560 | 5.1:-66558210 | MS.gene81683:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.531004 | 5.1:-66558249 | MS.gene81683:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.535349 | 5.1:-66558129 | MS.gene81683:CDS |
| AGTTATCACCACGGTGGAGG+TGG | 0.539894 | 5.1:-66557916 | MS.gene81683:CDS |
| GGTTACCACAATGGTGGTGG+TGG | 0.547395 | 5.1:-66558225 | MS.gene81683:CDS |
| GGTTACCACAACGGTGGCGG+TGG | 0.547786 | 5.1:-66558186 | MS.gene81683:CDS |
| TTTCATCAGTGATGTCCGCT+AGG | 0.548466 | 5.1:-66558883 | MS.gene81683:CDS |
| GGTGGTTACCACAACGGTGG+CGG | 0.548738 | 5.1:-66558189 | MS.gene81683:CDS |
| GGAGGTTACAACCATGGTGG+AGG | 0.550860 | 5.1:-66558285 | MS.gene81683:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.1:-66558147 | MS.gene81683:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.1:-66558282 | MS.gene81683:CDS |
| GGCGGTGGATACAATGGTGG+AGG | 0.551699 | 5.1:-66558171 | MS.gene81683:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.554746 | 5.1:-66558246 | MS.gene81683:CDS |
| CACCACGGTGGAGGTGGTCA+CGG | 0.555739 | 5.1:-66557910 | MS.gene81683:CDS |
| TACAATGGTGGTGGAGGACA+CGG | 0.556001 | 5.1:-66558123 | MS.gene81683:CDS |
| GGTGGTTACAACCATGGTGG+AGG | 0.556342 | 5.1:-66558150 | MS.gene81683:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.1:-66558090 | MS.gene81683:CDS |
| TTCATCAGTGATGTCCGCTA+GGG | 0.560051 | 5.1:-66558882 | MS.gene81683:CDS |
| GGAGGTGGTTACAACGGTGG+TGG | 0.562839 | 5.1:-66558267 | MS.gene81683:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.1:-66558096 | MS.gene81683:CDS |
| GGTAGTTATCACCACGGTGG+AGG | 0.564481 | 5.1:-66557919 | MS.gene81683:CDS |
| AATAAGAGCCATAGCCAAGA+GGG | 0.568016 | 5.1:+66558904 | None:intergenic |
| AACGGTGGCGGTGGATACAA+TGG | 0.572921 | 5.1:-66558177 | MS.gene81683:CDS |
| TGTATCCACCGCCACCGTTG+TGG | 0.577751 | 5.1:+66558181 | None:intergenic |
| GGTGGTTATAACCACGGTGG+TGG | 0.581184 | 5.1:-66558336 | MS.gene81683:CDS |
| GGAAGTTACAACCATGGTGG+AGG | 0.585493 | 5.1:-66557961 | MS.gene81683:CDS |
| AATGGTGGTGGTGGTTACAA+TGG | 0.585769 | 5.1:-66558216 | MS.gene81683:CDS |
| GGAGGTTATAACCACGGTGG+AGG | 0.590681 | 5.1:-66558303 | MS.gene81683:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.597788 | 5.1:-66558138 | MS.gene81683:CDS |
| AACCACGGTGGTGGTTACAA+TGG | 0.598930 | 5.1:-66558327 | MS.gene81683:CDS |
| AAATATGGAGGCTACAGCCA+TGG | 0.608534 | 5.1:-66558357 | MS.gene81683:CDS |
| CACGGTGGTGGTTACAATGG+TGG | 0.608752 | 5.1:-66558324 | MS.gene81683:CDS |
| GGTAGTTACAACCACGGAGG+AGG | 0.611011 | 5.1:-66557940 | MS.gene81683:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5.1:-66558135 | MS.gene81683:CDS |
| GGAGGTCATGGTGGTCATGG+CGG | 0.615530 | 5.1:-66558069 | MS.gene81683:CDS |
| AACGGTGGTGGTTACAACCA+CGG | 0.623888 | 5.1:-66558255 | MS.gene81683:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.625782 | 5.1:-66558321 | MS.gene81683:CDS |
| GTAAATGATGCCAAATATGG+AGG | 0.627438 | 5.1:-66558369 | MS.gene81683:CDS |
| CGTTGTAACCACCTCCACCA+TGG | 0.637472 | 5.1:+66558274 | None:intergenic |
| AATGATGCCAAATATGGTGG+TGG | 0.637670 | 5.1:-66558000 | MS.gene81683:CDS |
| TGTAACCACCACCACCATTG+TGG | 0.638615 | 5.1:+66558220 | None:intergenic |
| GGTGGTGGTGGTTACAATGG+TGG | 0.639443 | 5.1:-66558213 | MS.gene81683:CDS |
| CATGGTGGAGGTGGTTACAA+CGG | 0.645837 | 5.1:-66558273 | MS.gene81683:CDS |
| AATGGTGGTGGAGGTCATGG+TGG | 0.646548 | 5.1:-66558078 | MS.gene81683:CDS |
| CACGGTGGAGGTTACAACCA+TGG | 0.648231 | 5.1:-66558291 | MS.gene81683:CDS |
| CATTGTAACCACCTCCACCA+TGG | 0.649002 | 5.1:+66558139 | None:intergenic |
| GGTGGAGGTGGTTACCACAA+TGG | 0.652457 | 5.1:-66558234 | MS.gene81683:CDS |
| GGAGGACACGGTGGTCACGG+TGG | 0.653298 | 5.1:-66558111 | MS.gene81683:CDS |
| CACCGTGGTTATAACCACCA+TGG | 0.667967 | 5.1:+66558340 | None:intergenic |
| CACGGTGGAGGTGGTCACGG+TGG | 0.669961 | 5.1:-66557907 | MS.gene81683:CDS |
| TATGGAGGCTACAGCCATGG+TGG | 0.674682 | 5.1:-66558354 | MS.gene81683:CDS |
| GGTGGAGGTGGTTACCACAA+CGG | 0.678715 | 5.1:-66558195 | MS.gene81683:CDS |
| GGTGGAGGTGGTTACAACCA+TGG | 0.679817 | 5.1:-66558156 | MS.gene81683:CDS |
| GGTTGTAACTACCTCCACCA+TGG | 0.680661 | 5.1:+66557950 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.1:-66558093 | MS.gene81683:CDS |
| GTCTGTTGCTGTGCAAACTG+AGG | 0.682733 | 5.1:-66558040 | MS.gene81683:CDS |
| GGTGGTGGTAGTTACAACCA+TGG | 0.683746 | 5.1:-66557985 | MS.gene81683:CDS |
| ATGAATGATGCCAAATATGG+TGG | 0.691119 | 5.1:-66558003 | MS.gene81683:CDS |
| AGCCATGGTGGTTATAACCA+CGG | 0.691157 | 5.1:-66558342 | MS.gene81683:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.692127 | 5.1:+66557908 | None:intergenic |
| AAATAAGAGCCATAGCCAAG+AGG | 0.693468 | 5.1:+66558903 | None:intergenic |
| TCACGGTGCCGACCAAACTG+AGG | 0.694971 | 5.1:-66557884 | MS.gene81683:CDS |
| GGAGGTGGTTACCACAATGG+TGG | 0.699554 | 5.1:-66558231 | MS.gene81683:CDS |
| GGTGATAACTACCTCCTCCG+TGG | 0.701736 | 5.1:+66557929 | None:intergenic |
| GGAGGAAGTTACAACCATGG+TGG | 0.708611 | 5.1:-66557964 | MS.gene81683:CDS |
| GGTGGAGGTGGTTACAACGG+TGG | 0.713237 | 5.1:-66558270 | MS.gene81683:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.1:-66558309 | MS.gene81683:CDS |
| GGTGGCGGTGGATACAATGG+TGG | 0.717019 | 5.1:-66558174 | MS.gene81683:CDS |
| TGTGGTAACCACCTCCACCG+TGG | 0.717584 | 5.1:+66558238 | None:intergenic |
| CATGGAGGAAGTTACAACCA+TGG | 0.719430 | 5.1:-66557967 | MS.gene81683:CDS |
| GGAGGTGGTTACCACAACGG+TGG | 0.721174 | 5.1:-66558192 | MS.gene81683:CDS |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5.1:+66558868 | None:intergenic |
| AATGGTGGTGGAGGACACGG+TGG | 0.730218 | 5.1:-66558120 | MS.gene81683:CDS |
| GGTGGAGGTAGTTACAACCA+CGG | 0.730738 | 5.1:-66557946 | MS.gene81683:CDS |
| CACCATTGTAACCACCACCG+TGG | 0.740555 | 5.1:+66558325 | None:intergenic |
| GGAGGTGGTTACAACCATGG+TGG | 0.740649 | 5.1:-66558153 | MS.gene81683:CDS |
| GGTGGAGGTTACAACCATGG+TGG | 0.744001 | 5.1:-66558288 | MS.gene81683:CDS |
| GGTGGTAGTTACAACCATGG+AGG | 0.757972 | 5.1:-66557982 | MS.gene81683:CDS |
| GGAGGTAGTTATCACCACGG+TGG | 0.769330 | 5.1:-66557922 | MS.gene81683:CDS |
| GGAGGAGGTAGTTATCACCA+CGG | 0.770033 | 5.1:-66557925 | MS.gene81683:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.774475 | 5.1:-66558306 | MS.gene81683:CDS |
| CATGGTTGTAACCTCCACCG+TGG | 0.775135 | 5.1:+66558292 | None:intergenic |
| CATGGTGGTTATAACCACGG+TGG | 0.785326 | 5.1:-66558339 | MS.gene81683:CDS |
| GGTGGTGGTTACAACCACGG+TGG | 0.791258 | 5.1:-66558252 | MS.gene81683:CDS |
| GGAGGTAGTTACAACCACGG+AGG | 0.812225 | 5.1:-66557943 | MS.gene81683:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTATATAACATTG+AGG | + | chr5.1:66558122-66558141 | None:intergenic | 15.0% |
| !! | ATATAATCCTTCAAAAAAGT+AGG | + | chr5.1:66558049-66558068 | None:intergenic | 20.0% |
| !!! | ATTATTTCCTACTTTTTTGA+AGG | - | chr5.1:66558039-66558058 | MS.gene81683:CDS | 20.0% |
| ! | CATATATATTGTGTTTGTAG+AGG | - | chr5.1:66558390-66558409 | MS.gene81683:CDS | 25.0% |
| AAATCATACCTGTGTAATGT+TGG | + | chr5.1:66558261-66558280 | None:intergenic | 30.0% | |
| AATCATACCTGTGTAATGTT+GGG | + | chr5.1:66558260-66558279 | None:intergenic | 30.0% | |
| ATATATAGGGTCATGTTAAC+CGG | + | chr5.1:66558335-66558354 | None:intergenic | 30.0% | |
| GAAATGAATGATGCCAAATA+TGG | - | chr5.1:66558796-66558815 | MS.gene81683:intron | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.1:66558430-66558449 | MS.gene81683:intron | 30.0% | |
| TTCATTAAGAAGTTGTTGAG+TGG | - | chr5.1:66558221-66558240 | MS.gene81683:CDS | 30.0% | |
| ! | AAATTTTCCCAACATTACAC+AGG | - | chr5.1:66558250-66558269 | MS.gene81683:CDS | 30.0% |
| ATGAATGATGCCAAATATGG+TGG | - | chr5.1:66558799-66558818 | MS.gene81683:intron | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | - | chr5.1:66558433-66558452 | MS.gene81683:intron | 35.0% | |
| !! | TTTGAGTTTTGTCCTCAGTT+TGG | + | chr5.1:66558933-66558952 | None:intergenic | 35.0% |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5.1:66557902-66557921 | None:intergenic | 40.0% | |
| AACTTCCACCGATGCTAAAA+AGG | - | chr5.1:66557953-66557972 | MS.gene81683:CDS | 40.0% | |
| AATAAGAGCCATAGCCAAGA+GGG | + | chr5.1:66557901-66557920 | None:intergenic | 40.0% | |
| AATGATGCCAAATATGGTGG+TGG | - | chr5.1:66558802-66558821 | MS.gene81683:intron | 40.0% | |
| AATTCTCATGCTAACCCTCT+TGG | - | chr5.1:66557884-66557903 | MS.gene81683:CDS | 40.0% | |
| ACTTCCACCGATGCTAAAAA+GGG | - | chr5.1:66557954-66557973 | MS.gene81683:CDS | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | + | chr5.1:66557937-66557956 | None:intergenic | 40.0% | |
| GTAACTACCACCACCATATT+TGG | + | chr5.1:66558812-66558831 | None:intergenic | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.1:66558493-66558512 | MS.gene81683:intron | 40.0% |
| !! | AGTTTTGTCCTCAGTTTGGT+CGG | + | chr5.1:66558929-66558948 | None:intergenic | 40.0% |
| !! | TAGCTCACCCTTTTTAGCAT+CGG | + | chr5.1:66557964-66557983 | None:intergenic | 40.0% |
| AAATATGGAGGCTACAGCCA+TGG | - | chr5.1:66558445-66558464 | MS.gene81683:intron | 45.0% | |
| AGCCATGGTGGTTATAACCA+CGG | - | chr5.1:66558460-66558479 | MS.gene81683:intron | 45.0% | |
| ATGGCTGTAGCCTCCATATT+TGG | + | chr5.1:66558446-66558465 | None:intergenic | 45.0% | |
| CATGGAGGAAGTTACAACCA+TGG | - | chr5.1:66558835-66558854 | MS.gene81683:intron | 45.0% | |
| CATGGTTGTAACTTCCTCCA+TGG | + | chr5.1:66558837-66558856 | None:intergenic | 45.0% | |
| GACTTCTTAACCTGTGTCCT+AGG | - | chr5.1:66558305-66558324 | MS.gene81683:CDS | 45.0% | |
| TTCATCAGTGATGTCCGCTA+GGG | - | chr5.1:66557920-66557939 | MS.gene81683:CDS | 45.0% | |
| TTTCATCAGTGATGTCCGCT+AGG | - | chr5.1:66557919-66557938 | MS.gene81683:CDS | 45.0% | |
| !! | AATGGTGGTGGTGGTTACAA+TGG | - | chr5.1:66558586-66558605 | MS.gene81683:intron | 45.0% |
| !! | ATATAGATATATATTTAAAA+AGG | - | chr5.1:66558351-66558370 | MS.gene81683:CDS | 5.0% |
| !! | TAAATATATATCTATATATA+GGG | + | chr5.1:66558348-66558367 | None:intergenic | 5.0% |
| !! | TTAAATATATATCTATATAT+AGG | + | chr5.1:66558349-66558368 | None:intergenic | 5.0% |
| CACCGTGGTTATAACCACCA+TGG | + | chr5.1:66558465-66558484 | None:intergenic | 50.0% | |
| CATGCTAACCCTCTTGGCTA+TGG | - | chr5.1:66557890-66557909 | MS.gene81683:CDS | 50.0% | |
| CATGGTGGTTATAACCACGG+TGG | - | chr5.1:66558463-66558482 | MS.gene81683:intron | 50.0% | |
| CATTGTAACCACCTCCACCA+TGG | + | chr5.1:66558666-66558685 | None:intergenic | 50.0% | |
| GGAAGTTACAACCATGGTGG+AGG | - | chr5.1:66558841-66558860 | MS.gene81683:intron | 50.0% | |
| GGAGGAAGTTACAACCATGG+TGG | - | chr5.1:66558838-66558857 | MS.gene81683:intron | 50.0% | |
| GGAGGAGGTAGTTATCACCA+CGG | - | chr5.1:66558877-66558896 | MS.gene81683:CDS | 50.0% | |
| GGTGGAGGTAGTTACAACCA+CGG | - | chr5.1:66558856-66558875 | MS.gene81683:CDS | 50.0% | |
| GGTGGTAGTTACAACCATGG+AGG | - | chr5.1:66558820-66558839 | MS.gene81683:intron | 50.0% | |
| GGTTGTAACTACCTCCACCA+TGG | + | chr5.1:66558855-66558874 | None:intergenic | 50.0% | |
| GTCTGTTGCTGTGCAAACTG+AGG | - | chr5.1:66558762-66558781 | MS.gene81683:intron | 50.0% | |
| TCATGTTAACCGGTGCTCCT+AGG | + | chr5.1:66558325-66558344 | None:intergenic | 50.0% | |
| TGTAACCACCACCACCATTG+TGG | + | chr5.1:66558585-66558604 | None:intergenic | 50.0% | |
| ! | AACCACGGTGGTGGTTACAA+TGG | - | chr5.1:66558475-66558494 | MS.gene81683:intron | 50.0% |
| ! | AACGGTGGTGGTTACAACCA+CGG | - | chr5.1:66558547-66558566 | MS.gene81683:intron | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+CGG | - | chr5.1:66558529-66558548 | MS.gene81683:intron | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66558529-66558548 | MS.gene81683:intron | 50.0% |
| ! | GGTGGTGGTAGTTACAACCA+TGG | - | chr5.1:66558817-66558836 | MS.gene81683:intron | 50.0% |
| !! | CTCACCCTTTTTAGCATCGG+TGG | + | chr5.1:66557961-66557980 | None:intergenic | 50.0% |
| !! | TACAATGGTGGTGGAGGACA+CGG | - | chr5.1:66558679-66558698 | MS.gene81683:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+TGG | - | chr5.1:66558721-66558740 | MS.gene81683:intron | 50.0% |
| AGTTATCACCACGGTGGAGG+TGG | - | chr5.1:66558886-66558905 | MS.gene81683:CDS | 55.0% | |
| CACCATTGTAACCACCACCG+TGG | + | chr5.1:66558480-66558499 | None:intergenic | 55.0% | |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66558706-66558725 | MS.gene81683:intron | 55.0% | |
| CACGGTGGAGGTTACAACCA+TGG | - | chr5.1:66558511-66558530 | MS.gene81683:intron | 55.0% | |
| CATGGTTGTAACCTCCACCG+TGG | + | chr5.1:66558513-66558532 | None:intergenic | 55.0% | |
| CGTTGTAACCACCTCCACCA+TGG | + | chr5.1:66558531-66558550 | None:intergenic | 55.0% | |
| GGAGGTAGTTACAACCACGG+AGG | - | chr5.1:66558859-66558878 | MS.gene81683:CDS | 55.0% | |
| GGAGGTAGTTATCACCACGG+TGG | - | chr5.1:66558880-66558899 | MS.gene81683:CDS | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | - | chr5.1:66558649-66558668 | MS.gene81683:intron | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.1:66558670-66558689 | MS.gene81683:intron | 55.0% | |
| GGAGGTGGTTACCACAATGG+TGG | - | chr5.1:66558571-66558590 | MS.gene81683:intron | 55.0% | |
| GGAGGTTACAACCATGGTGG+AGG | - | chr5.1:66558517-66558536 | MS.gene81683:intron | 55.0% | |
| GGAGGTTATAACCACGGTGG+AGG | - | chr5.1:66558499-66558518 | MS.gene81683:intron | 55.0% | |
| GGTAGTTACAACCACGGAGG+AGG | - | chr5.1:66558862-66558881 | MS.gene81683:CDS | 55.0% | |
| GGTAGTTATCACCACGGTGG+AGG | - | chr5.1:66558883-66558902 | MS.gene81683:CDS | 55.0% | |
| GGTGATAACTACCTCCTCCG+TGG | + | chr5.1:66558876-66558895 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTTACAACCA+TGG | - | chr5.1:66558646-66558665 | MS.gene81683:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.1:66558667-66558686 | MS.gene81683:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+CGG | - | chr5.1:66558568-66558587 | MS.gene81683:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+TGG | - | chr5.1:66558568-66558587 | MS.gene81683:intron | 55.0% | |
| GGTGGAGGTTACAACCATGG+TGG | - | chr5.1:66558514-66558533 | MS.gene81683:intron | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.1:66558496-66558515 | MS.gene81683:intron | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | - | chr5.1:66558652-66558671 | MS.gene81683:intron | 55.0% | |
| GGTGGTTACCACAATGGTGG+TGG | - | chr5.1:66558574-66558593 | MS.gene81683:intron | 55.0% | |
| GGTGGTTATAACCACGGTGG+TGG | - | chr5.1:66558466-66558485 | MS.gene81683:intron | 55.0% | |
| TATGGAGGCTACAGCCATGG+TGG | - | chr5.1:66558448-66558467 | MS.gene81683:intron | 55.0% | |
| ! | AACCTGTGTCCTAGGAGCAC+CGG | - | chr5.1:66558313-66558332 | MS.gene81683:CDS | 55.0% |
| ! | AACGGTGGCGGTGGATACAA+TGG | - | chr5.1:66558625-66558644 | MS.gene81683:intron | 55.0% |
| ! | CACGGTGGTGGTTACAATGG+TGG | - | chr5.1:66558478-66558497 | MS.gene81683:intron | 55.0% |
| ! | GGTGGATACAATGGTGGAGG+TGG | - | chr5.1:66558634-66558653 | MS.gene81683:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.1:66558481-66558500 | MS.gene81683:intron | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5.1:66558484-66558503 | MS.gene81683:intron | 55.0% |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5.1:66558520-66558539 | MS.gene81683:intron | 55.0% |
| !! | AATGGTGGTGGAGGTCATGG+TGG | - | chr5.1:66558724-66558743 | MS.gene81683:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5.1:66558589-66558608 | MS.gene81683:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.1:66558673-66558692 | MS.gene81683:intron | 55.0% |
| !! | GGTTACCACAATGGTGGTGG+TGG | - | chr5.1:66558577-66558596 | MS.gene81683:intron | 55.0% |
| AACCGGTGCTCCTAGGACAC+AGG | + | chr5.1:66558318-66558337 | None:intergenic | 60.0% | |
| GGAGGTCATGGTGGTCATGG+CGG | - | chr5.1:66558733-66558752 | MS.gene81683:intron | 60.0% | |
| GGAGGTGGTTACAACGGTGG+TGG | - | chr5.1:66558535-66558554 | MS.gene81683:intron | 60.0% | |
| GGAGGTGGTTACCACAACGG+TGG | - | chr5.1:66558610-66558629 | MS.gene81683:intron | 60.0% | |
| GGCGGTGGATACAATGGTGG+AGG | - | chr5.1:66558631-66558650 | MS.gene81683:intron | 60.0% | |
| GGTGGAGGTCATGGTGGTCA+TGG | - | chr5.1:66558730-66558749 | MS.gene81683:intron | 60.0% | |
| GGTGGAGGTGGTTACAACGG+TGG | - | chr5.1:66558532-66558551 | MS.gene81683:intron | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.1:66558553-66558572 | MS.gene81683:intron | 60.0% | |
| GGTGGTTACCACAACGGTGG+CGG | - | chr5.1:66558613-66558632 | MS.gene81683:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.1:66558556-66558575 | MS.gene81683:intron | 60.0% | |
| TGTATCCACCGCCACCGTTG+TGG | + | chr5.1:66558624-66558643 | None:intergenic | 60.0% | |
| TGTGGTAACCACCTCCACCG+TGG | + | chr5.1:66558567-66558586 | None:intergenic | 60.0% | |
| ! | GGTGGCGGTGGATACAATGG+TGG | - | chr5.1:66558628-66558647 | MS.gene81683:intron | 60.0% |
| ! | GGTGGTGGTTACAACCACGG+TGG | - | chr5.1:66558550-66558569 | MS.gene81683:intron | 60.0% |
| !! | AATGGTGGTGGAGGACACGG+TGG | - | chr5.1:66558682-66558701 | MS.gene81683:intron | 60.0% |
| !! | TCACGGTGCCGACCAAACTG+AGG | - | chr5.1:66558918-66558937 | MS.gene81683:CDS | 60.0% |
| CACCACGGTGGAGGTGGTCA+CGG | - | chr5.1:66558892-66558911 | MS.gene81683:CDS | 65.0% | |
| GGAGGTGGTCACGGTGGTCA+CGG | - | chr5.1:66558901-66558920 | MS.gene81683:CDS | 65.0% | |
| GGTGGAGGACACGGTGGTCA+CGG | - | chr5.1:66558688-66558707 | MS.gene81683:intron | 65.0% | |
| ! | GGTTACCACAACGGTGGCGG+TGG | - | chr5.1:66558616-66558635 | MS.gene81683:intron | 65.0% |
| CACCGTGACCACCTCCACCG+TGG | + | chr5.1:66558897-66558916 | None:intergenic | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | - | chr5.1:66558895-66558914 | MS.gene81683:CDS | 70.0% | |
| CACGGTGGTCACGGTGGAGG+TGG | - | chr5.1:66558697-66558716 | MS.gene81683:intron | 70.0% | |
| GGACACGGTGGTCACGGTGG+AGG | - | chr5.1:66558694-66558713 | MS.gene81683:intron | 70.0% | |
| GGAGGACACGGTGGTCACGG+TGG | - | chr5.1:66558691-66558710 | MS.gene81683:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66557867 | 66558957 | 66557867 | ID=MS.gene81683 |
| chr5.1 | mRNA | 66557867 | 66558957 | 66557867 | ID=MS.gene81683.t1;Parent=MS.gene81683 |
| chr5.1 | exon | 66558849 | 66558957 | 66558849 | ID=MS.gene81683.t1.exon1;Parent=MS.gene81683.t1 |
| chr5.1 | CDS | 66558849 | 66558957 | 66558849 | ID=cds.MS.gene81683.t1;Parent=MS.gene81683.t1 |
| chr5.1 | exon | 66557867 | 66558414 | 66557867 | ID=MS.gene81683.t1.exon2;Parent=MS.gene81683.t1 |
| chr5.1 | CDS | 66557867 | 66558414 | 66557867 | ID=cds.MS.gene81683.t1;Parent=MS.gene81683.t1 |
| Gene Sequence |
| Protein sequence |
