Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82319.t1 | XP_003590763.1 | 97.6 | 669 | 16 | 0 | 1 | 669 | 1 | 669 | 0.00E+00 | 1327 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82319.t1 | Q9SS87 | 29.0 | 700 | 431 | 20 | 22 | 661 | 36 | 729 | 1.2e-75 | 285.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82319.t1 | E2FKJ5 | 97.6 | 669 | 16 | 0 | 1 | 669 | 1 | 669 | 0.0e+00 | 1327.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene82319 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene82319 | 0.810635 | 1.04E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene82319 | 0.824376 | 8.35E-54 | -1.69E-46 |
| MS.gene053641 | MS.gene82319 | 0.804726 | 1.88E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene82319 | 0.824602 | 7.38E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene82319 | 0.807971 | 3.89E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene82319 | 0.801295 | 9.63E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene82319 | 0.839829 | 1.25E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene82319 | 0.802653 | 5.07E-49 | -1.69E-46 |
| MS.gene055846 | MS.gene82319 | 0.806323 | 8.70E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene82319 | 0.849894 | 2.41E-60 | -1.69E-46 |
| MS.gene057915 | MS.gene82319 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene82319 | 0.80247 | 5.53E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene82319 | -0.806912 | 6.53E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene82319 | 0.821786 | 3.35E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene82319 | 0.831759 | 1.39E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene82319 | 0.821092 | 4.85E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82319.t1 | MTR_1g074990 | 97.608 | 669 | 16 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1347 |
| MS.gene82319.t1 | MTR_1g075095 | 83.735 | 664 | 106 | 1 | 1 | 662 | 1 | 664 | 0.0 | 1144 |
| MS.gene82319.t1 | MTR_1g075030 | 83.283 | 664 | 109 | 1 | 1 | 662 | 1 | 664 | 0.0 | 1142 |
| MS.gene82319.t1 | MTR_1g075230 | 77.628 | 666 | 147 | 1 | 1 | 664 | 1 | 666 | 0.0 | 1042 |
| MS.gene82319.t1 | MTR_1g074950 | 59.132 | 668 | 265 | 6 | 5 | 669 | 9 | 671 | 0.0 | 810 |
| MS.gene82319.t1 | MTR_1g040360 | 35.982 | 667 | 403 | 10 | 20 | 668 | 25 | 685 | 8.54e-149 | 448 |
| MS.gene82319.t1 | MTR_7g032660 | 33.862 | 694 | 400 | 19 | 24 | 663 | 25 | 713 | 1.85e-111 | 352 |
| MS.gene82319.t1 | MTR_1g075180 | 31.587 | 668 | 393 | 16 | 20 | 663 | 11 | 638 | 1.08e-103 | 330 |
| MS.gene82319.t1 | MTR_1g075170 | 31.297 | 671 | 402 | 17 | 20 | 663 | 31 | 669 | 9.83e-101 | 323 |
| MS.gene82319.t1 | MTR_3g075450 | 31.387 | 685 | 415 | 19 | 23 | 659 | 27 | 704 | 3.40e-97 | 314 |
| MS.gene82319.t1 | MTR_8g089660 | 31.025 | 693 | 418 | 22 | 22 | 660 | 17 | 703 | 7.67e-97 | 313 |
| MS.gene82319.t1 | MTR_1g075153 | 29.806 | 671 | 411 | 14 | 20 | 666 | 34 | 668 | 3.44e-93 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82319.t1 | AT3G01680 | 31.461 | 623 | 348 | 22 | 109 | 661 | 116 | 729 | 2.78e-88 | 291 |
| MS.gene82319.t1 | AT3G01670 | 25.989 | 708 | 433 | 22 | 22 | 659 | 134 | 820 | 1.84e-55 | 203 |
| MS.gene82319.t1 | AT3G01670 | 25.989 | 708 | 433 | 22 | 22 | 659 | 158 | 844 | 3.07e-55 | 202 |
| MS.gene82319.t1 | AT1G67790 | 24.544 | 603 | 397 | 19 | 96 | 657 | 79 | 664 | 6.40e-40 | 156 |
Find 149 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1.3:-53489256 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152895 | 1.3:+53488983 | MS.gene82319:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1.3:+53488359 | MS.gene82319:CDS |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1.3:-53489545 | None:intergenic |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1.3:+53488499 | MS.gene82319:CDS |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1.3:+53489605 | MS.gene82319:CDS |
| TGTTTAAGGTGCTGATATTT+TGG | 0.216136 | 1.3:+53488997 | MS.gene82319:CDS |
| CATCACTTTGCACCCATTAA+AGG | 0.219072 | 1.3:+53489388 | MS.gene82319:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1.3:+53489747 | MS.gene82319:CDS |
| TATGTACTTAATGCCTTTAA+TGG | 0.230023 | 1.3:-53489401 | None:intergenic |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1.3:-53489551 | None:intergenic |
| CCATCATAGATGGGAGCTTT+TGG | 0.253276 | 1.3:-53489029 | None:intergenic |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1.3:-53488301 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1.3:+53488971 | MS.gene82319:CDS |
| AGGCAGGATTTATCTCATTT+TGG | 0.270915 | 1.3:+53488735 | MS.gene82319:CDS |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1.3:+53489501 | MS.gene82319:CDS |
| TGCTCATCAGACATGGTTAA+AGG | 0.291226 | 1.3:-53485417 | None:intergenic |
| CATTGACCTTATCCCCATTA+TGG | 0.291629 | 1.3:-53490280 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1.3:+53489500 | MS.gene82319:CDS |
| CAAATGTGGTTAACAACTTC+TGG | 0.309632 | 1.3:+53489889 | MS.gene82319:CDS |
| CAGAAGTTGTTAACCACATT+TGG | 0.310909 | 1.3:-53489888 | None:intergenic |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1.3:+53488473 | MS.gene82319:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1.3:+53488500 | MS.gene82319:CDS |
| GGACTCAACACAACAAATAA+AGG | 0.327305 | 1.3:-53489451 | None:intergenic |
| CCCTTGAGTATGGAGACTTC+TGG | 0.329114 | 1.3:+53488244 | MS.gene82319:CDS |
| CTTGAGATTCCTAATGTTGC+TGG | 0.329358 | 1.3:+53490185 | MS.gene82319:CDS |
| AGCTACAAGTGTTGCCATAA+TGG | 0.333033 | 1.3:+53490266 | MS.gene82319:CDS |
| TCAAAATTGAGATGTCTTCT+TGG | 0.335715 | 1.3:-53489231 | None:intergenic |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1.3:+53485425 | MS.gene82319:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1.3:-53489504 | None:intergenic |
| GCTACAAGTGTTGCCATAAT+GGG | 0.348663 | 1.3:+53490267 | MS.gene82319:CDS |
| GGTTAACAACTTCTGGAAAA+AGG | 0.351962 | 1.3:+53489896 | MS.gene82319:CDS |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1.3:-53488504 | None:intergenic |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1.3:+53489511 | MS.gene82319:CDS |
| ATGTACTTAATGCCTTTAAT+GGG | 0.364544 | 1.3:-53489400 | None:intergenic |
| TCTGGACACTCGATAAAATC+TGG | 0.364613 | 1.3:-53490215 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.371032 | 1.3:+53488187 | MS.gene82319:CDS |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1.3:-53489538 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1.3:-53489255 | None:intergenic |
| TTTAGTGGAACCATCATAGA+TGG | 0.382422 | 1.3:-53489039 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1.3:-53490233 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1.3:+53489262 | MS.gene82319:CDS |
| CAAAATTGAGATGTCTTCTT+GGG | 0.390337 | 1.3:-53489230 | None:intergenic |
| AAAGATGTCGCAATCAATAA+AGG | 0.397602 | 1.3:+53490098 | MS.gene82319:CDS |
| TAAGGTCAATGGCGAGCATT+AGG | 0.411115 | 1.3:+53490292 | MS.gene82319:CDS |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1.3:-53485410 | None:intergenic |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1.3:-53485470 | None:intergenic |
| ATTGTGACTTCCGTTGGTCA+TGG | 0.436478 | 1.3:+53490035 | MS.gene82319:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1.3:+53488291 | MS.gene82319:CDS |
| GTTGAGACTCCAAGCAAAAC+AGG | 0.438369 | 1.3:-53489863 | None:intergenic |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1.3:-53488281 | None:intergenic |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1.3:+53489510 | MS.gene82319:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1.3:-53489310 | None:intergenic |
| CTTTCGTACAAAACTGAGAC+AGG | 0.458443 | 1.3:+53489987 | MS.gene82319:CDS |
| GGAGCTCAACAATTTGATCA+AGG | 0.463664 | 1.3:+53488380 | MS.gene82319:CDS |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1.3:-53489818 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1.3:-53488474 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1.3:+53485724 | MS.gene82319:intron |
| CTTTGAAGTTAAAGATGCCT+TGG | 0.470296 | 1.3:+53489356 | MS.gene82319:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1.3:+53488198 | MS.gene82319:CDS |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1.3:+53485716 | MS.gene82319:intron |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1.3:+53488416 | MS.gene82319:CDS |
| TTGTATGCTATTTCCTCACC+TGG | 0.476461 | 1.3:-53488144 | None:intergenic |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1.3:-53488191 | None:intergenic |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1.3:+53489606 | MS.gene82319:CDS |
| GGAAGTCACAATAGACCCTT+TGG | 0.480483 | 1.3:-53490024 | None:intergenic |
| GCTCATCAGACATGGTTAAA+GGG | 0.484807 | 1.3:-53485416 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1.3:-53489594 | None:intergenic |
| TTGTGACTTCCGTTGGTCAT+GGG | 0.487496 | 1.3:+53490036 | MS.gene82319:CDS |
| CCGTGGCGGAGTTTGACAAA+TGG | 0.489513 | 1.3:+53490075 | MS.gene82319:CDS |
| GTGTTGCCATAATGGGGATA+AGG | 0.491018 | 1.3:+53490274 | MS.gene82319:CDS |
| ACAATTTGATCAAGGCAACT+TGG | 0.492049 | 1.3:+53488388 | MS.gene82319:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1.3:+53488801 | MS.gene82319:CDS |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1.3:-53485751 | None:intergenic |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1.3:-53488977 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1.3:+53489029 | MS.gene82319:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1.3:-53488486 | None:intergenic |
| CTGAGTAACAATTGCAACAA+TGG | 0.523241 | 1.3:-53488532 | None:intergenic |
| CTGGACACTCGATAAAATCT+GGG | 0.524375 | 1.3:-53490214 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1.3:+53485733 | MS.gene82319:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1.3:+53489563 | MS.gene82319:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1.3:-53489311 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1.3:+53489579 | MS.gene82319:CDS |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1.3:-53488294 | None:intergenic |
| GCTTCAGGCTTTGAAAGTTG+AGG | 0.543555 | 1.3:-53488330 | None:intergenic |
| AGGCATTAAGTACATAAAAG+AGG | 0.543774 | 1.3:+53489408 | MS.gene82319:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1.3:-53488285 | None:intergenic |
| CATAATGGGGATAAGGTCAA+TGG | 0.544821 | 1.3:+53490281 | MS.gene82319:CDS |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1.3:+53488126 | MS.gene82319:intron |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1.3:+53489766 | MS.gene82319:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1.3:-53485770 | None:intergenic |
| CAACAGTTCACTAAGTATGC+TGG | 0.551771 | 1.3:+53489792 | MS.gene82319:CDS |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1.3:+53489761 | MS.gene82319:CDS |
| AACAAACACTGTTACACAGC+AGG | 0.557708 | 1.3:+53489953 | MS.gene82319:CDS |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1.3:-53488978 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1.3:+53488769 | MS.gene82319:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1.3:+53489305 | MS.gene82319:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1.3:-53489537 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1.3:-53489593 | None:intergenic |
| CAGAATATAACAAGTTACTC+AGG | 0.569457 | 1.3:+53488940 | MS.gene82319:CDS |
| GGGTCTATTGTGACTTCCGT+TGG | 0.572144 | 1.3:+53490029 | MS.gene82319:CDS |
| CCATTTGTCAAACTCCGCCA+CGG | 0.572946 | 1.3:-53490075 | None:intergenic |
| TGATGGTTCCACTAAAACAC+TGG | 0.573095 | 1.3:+53489046 | MS.gene82319:CDS |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1.3:+53488188 | MS.gene82319:CDS |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1.3:-53489817 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1.3:-53485424 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1.3:-53485365 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1.3:-53489288 | None:intergenic |
| CAGCAACATTAGGAATCTCA+AGG | 0.582036 | 1.3:-53490184 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1.3:-53489472 | None:intergenic |
| TTAGTGGAACCATCATAGAT+GGG | 0.587810 | 1.3:-53489038 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.592436 | 1.3:+53490008 | MS.gene82319:CDS |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1.3:+53489297 | MS.gene82319:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1.3:+53489284 | MS.gene82319:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1.3:+53488131 | MS.gene82319:CDS |
| TTTGTTGTGTTGAGTCCACA+AGG | 0.600641 | 1.3:+53489457 | MS.gene82319:CDS |
| AACTGTAGTCCCATGACCAA+CGG | 0.603887 | 1.3:-53490045 | None:intergenic |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1.3:+53485369 | MS.gene82319:CDS |
| GGTGGGCAATTGTAACCAAA+GGG | 0.607043 | 1.3:+53490009 | MS.gene82319:CDS |
| ACCAGAAGTCTCCATACTCA+AGG | 0.607323 | 1.3:-53488245 | None:intergenic |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1.3:+53488446 | MS.gene82319:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.612191 | 1.3:-53485539 | None:intergenic |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1.3:+53489502 | MS.gene82319:CDS |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1.3:-53488976 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1.3:+53489564 | MS.gene82319:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1.3:+53485799 | MS.gene82319:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1.3:+53490232 | MS.gene82319:CDS |
| CTACAAGTGTTGCCATAATG+GGG | 0.646603 | 1.3:+53490268 | MS.gene82319:CDS |
| CAGAACGTTATCAACAACAT+GGG | 0.651391 | 1.3:-53485538 | None:intergenic |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1.3:+53489875 | MS.gene82319:CDS |
| CCAGAAGTCTCCATACTCAA+GGG | 0.652849 | 1.3:-53488244 | None:intergenic |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1.3:+53489750 | MS.gene82319:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1.3:-53485748 | None:intergenic |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1.3:-53489832 | None:intergenic |
| ATGATGGCAGATGTCATGCA+AGG | 0.662170 | 1.3:+53488119 | MS.gene82319:intron |
| ATTTAGAGAACATCATCACA+AGG | 0.662401 | 1.3:+53490133 | MS.gene82319:CDS |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1.3:-53489373 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1.3:-53488503 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1.3:+53489285 | MS.gene82319:CDS |
| TAATGAACACTTCCATTGTG+CGG | 0.679237 | 1.3:-53490244 | None:intergenic |
| AAGGTGAGAGCAAATATGAA+CGG | 0.680495 | 1.3:-53490165 | None:intergenic |
| CGTACAAAACTGAGACAGGG+TGG | 0.683383 | 1.3:+53489991 | MS.gene82319:CDS |
| GTACAAAACTGAGACAGGGT+GGG | 0.685345 | 1.3:+53489992 | MS.gene82319:CDS |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1.3:+53489300 | MS.gene82319:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1.3:+53488962 | MS.gene82319:CDS |
| TTTCGTACAAAACTGAGACA+GGG | 0.696059 | 1.3:+53489988 | MS.gene82319:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1.3:-53485767 | None:intergenic |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1.3:+53485719 | MS.gene82319:intron |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1.3:-53485788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATATTATTAGAAGT+TGG | - | chr1.3:53485644-53485663 | None:intergenic | 10.0% |
| !! | CCAAAAAAAAAAAAAAATTT+AGG | - | chr1.3:53487626-53487645 | None:intergenic | 10.0% |
| !! | TCTAAAAAAAATCATTAAAT+GGG | - | chr1.3:53486089-53486108 | None:intergenic | 10.0% |
| !!! | ACTTCTAATAATATATTTTT+CGG | + | chr1.3:53485644-53485663 | MS.gene82319:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAATC+AGG | + | chr1.3:53489147-53489166 | MS.gene82319:intron | 10.0% |
| !!! | CCTAAATTTTTTTTTTTTTT+TGG | + | chr1.3:53487623-53487642 | MS.gene82319:intron | 10.0% |
| !!! | TTGTTTCTTATTTTAATTAT+GGG | - | chr1.3:53486036-53486055 | None:intergenic | 10.0% |
| !!! | TTTGTTTCTTATTTTAATTA+TGG | - | chr1.3:53486037-53486056 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTCAAAATCTTA+AGG | + | chr1.3:53486882-53486901 | MS.gene82319:intron | 10.0% |
| !! | AAAAAAAATTGGTATAAAAG+AGG | + | chr1.3:53487043-53487062 | MS.gene82319:intron | 15.0% |
| !! | AAAAAAATTGGTATAAAAGA+GGG | + | chr1.3:53487044-53487063 | MS.gene82319:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1.3:53487551-53487570 | MS.gene82319:intron | 15.0% |
| !! | AATGCTAATAAAATTAAGTA+AGG | - | chr1.3:53487149-53487168 | None:intergenic | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | + | chr1.3:53489605-53489624 | MS.gene82319:CDS | 15.0% |
| !! | AGTTATTTGTATTTAATTAG+AGG | - | chr1.3:53485692-53485711 | None:intergenic | 15.0% |
| !! | ATATTAATCAAATTCATGAA+AGG | + | chr1.3:53487958-53487977 | MS.gene82319:intron | 15.0% |
| !! | CAAAAAATGTTATATTCAAA+TGG | - | chr1.3:53486596-53486615 | None:intergenic | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | + | chr1.3:53489606-53489625 | MS.gene82319:CDS | 15.0% |
| !! | TAAGCATAATTAAACAAATT+TGG | + | chr1.3:53487479-53487498 | MS.gene82319:intron | 15.0% |
| !! | TATAATAATGAAAATGGAAA+AGG | + | chr1.3:53487787-53487806 | MS.gene82319:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1.3:53489258-53489277 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAATTGGAGAA+AGG | + | chr1.3:53487850-53487869 | MS.gene82319:intron | 15.0% |
| !! | TTCAAAAATTTAAGAATTCA+AGG | - | chr1.3:53487240-53487259 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1.3:53489259-53489278 | None:intergenic | 15.0% |
| !! | TTTACTATAAAGTTTACATA+AGG | - | chr1.3:53488072-53488091 | None:intergenic | 15.0% |
| !!! | AAACAAATTTAGTTTTTACA+AGG | - | chr1.3:53487211-53487230 | None:intergenic | 15.0% |
| !!! | ATAACTTGTTTATAATTATC+AGG | + | chr1.3:53485706-53485725 | MS.gene82319:intron | 15.0% |
| !!! | CATTTAATGATTTTTTTTAG+AGG | + | chr1.3:53486088-53486107 | MS.gene82319:intron | 15.0% |
| !!! | CCAATTTTTTTTTTAAAAGA+TGG | - | chr1.3:53487846-53487865 | None:intergenic | 15.0% |
| !!! | CCATCTTTTAAAAAAAAAAT+TGG | + | chr1.3:53487843-53487862 | MS.gene82319:intron | 15.0% |
| !!! | CTCTAAAAAAAATCATTAAA+TGG | - | chr1.3:53486090-53486109 | None:intergenic | 15.0% |
| !!! | TAAATTTTTGAACGATATTT+TGG | + | chr1.3:53487248-53487267 | MS.gene82319:intron | 15.0% |
| !!! | TAACTTGTTTATAATTATCA+GGG | + | chr1.3:53485707-53485726 | MS.gene82319:intron | 15.0% |
| !!! | TAATGCATTTTATTATGAAA+TGG | - | chr1.3:53486406-53486425 | None:intergenic | 15.0% |
| !!! | TATGAACTTTTAAAAAATGT+TGG | - | chr1.3:53487941-53487960 | None:intergenic | 15.0% |
| !!! | TATTTTACTAAAATTGACAA+GGG | - | chr1.3:53487024-53487043 | None:intergenic | 15.0% |
| !!! | TCACTAAAAAAGTTTTAAAT+AGG | + | chr1.3:53486177-53486196 | MS.gene82319:intron | 15.0% |
| !!! | TTATTTTACTAAAATTGACA+AGG | - | chr1.3:53487025-53487044 | None:intergenic | 15.0% |
| !!! | TTTAGAGTTAAATATGTTTT+TGG | + | chr1.3:53487091-53487110 | MS.gene82319:intron | 15.0% |
| !!! | TTTTAATTTCATGTTATCTT+TGG | + | chr1.3:53489709-53489728 | MS.gene82319:intron | 15.0% |
| !!! | TTTTTTATCCCTATAAAATT+AGG | - | chr1.3:53487593-53487612 | None:intergenic | 15.0% |
| !! | AAAAATGTCAAAACTATTCA+TGG | - | chr1.3:53486214-53486233 | None:intergenic | 20.0% |
| !! | AAAATGTCAAAACTATTCAT+GGG | - | chr1.3:53486213-53486232 | None:intergenic | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1.3:53488637-53488656 | None:intergenic | 20.0% |
| !! | ATGTTATATTCAAATGGATA+AGG | - | chr1.3:53486590-53486609 | None:intergenic | 20.0% |
| !! | CATTAAAAAAGTTTCTTAAC+AGG | + | chr1.3:53486149-53486168 | MS.gene82319:intron | 20.0% |
| !! | TAAACAAATTTGGATTAAGA+AGG | + | chr1.3:53487489-53487508 | MS.gene82319:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | + | chr1.3:53489262-53489281 | MS.gene82319:CDS | 20.0% |
| !! | TGAAAAGAGTAACAAAAATA+TGG | + | chr1.3:53487372-53487391 | MS.gene82319:intron | 20.0% |
| !! | TGATTCAATTATTTGAGAAA+AGG | - | chr1.3:53486559-53486578 | None:intergenic | 20.0% |
| !! | TTTATGTTTAAGTATGTACA+AGG | + | chr1.3:53489109-53489128 | MS.gene82319:intron | 20.0% |
| !! | TTTCGTATGATAAGTAAATA+GGG | + | chr1.3:53485841-53485860 | MS.gene82319:intron | 20.0% |
| !!! | AAAAAGTTTTAAATAGGTGA+TGG | + | chr1.3:53486183-53486202 | MS.gene82319:intron | 20.0% |
| !!! | AAAAGTTTTAAATAGGTGAT+GGG | + | chr1.3:53486184-53486203 | MS.gene82319:intron | 20.0% |
| !!! | AAAATTCAAGTTAGGTTTTT+AGG | - | chr1.3:53486908-53486927 | None:intergenic | 20.0% |
| !!! | AAATGCAGAATGTTTTTATA+CGG | + | chr1.3:53487522-53487541 | MS.gene82319:intron | 20.0% |
| !!! | AAGTAAGGACTAAATTTTAA+AGG | + | chr1.3:53487566-53487585 | MS.gene82319:intron | 20.0% |
| !!! | ACATGTAATTTTCTTTTTGT+AGG | - | chr1.3:53487179-53487198 | None:intergenic | 20.0% |
| !!! | AGTTACAATTTTTTTTTTCC+AGG | + | chr1.3:53488706-53488725 | MS.gene82319:intron | 20.0% |
| !!! | AGTTTAAGTTAAAGAGTTAA+AGG | - | chr1.3:53486503-53486522 | None:intergenic | 20.0% |
| !!! | CATGTAATTTTCTTTTTGTA+GGG | - | chr1.3:53487178-53487197 | None:intergenic | 20.0% |
| !!! | GAAATTAAATATTTTGCAGA+GGG | + | chr1.3:53487400-53487419 | MS.gene82319:intron | 20.0% |
| !!! | GTTACAATTTTTTTTTTCCA+GGG | + | chr1.3:53488707-53488726 | MS.gene82319:intron | 20.0% |
| !!! | GTTTACATAAGGATATTTTT+TGG | - | chr1.3:53488061-53488080 | None:intergenic | 20.0% |
| !!! | TAAAGCAAAAAATTCAAGTT+AGG | - | chr1.3:53486916-53486935 | None:intergenic | 20.0% |
| !!! | TTAAAGGTCCTAATTTTATA+GGG | + | chr1.3:53487582-53487601 | MS.gene82319:intron | 20.0% |
| !!! | TTTAAAGGTCCTAATTTTAT+AGG | + | chr1.3:53487581-53487600 | MS.gene82319:intron | 20.0% |
| !!! | TTTTCGTATGATAAGTAAAT+AGG | + | chr1.3:53485840-53485859 | MS.gene82319:intron | 20.0% |
| !!! | TTTTGTTTTATCGAAAGATT+TGG | + | chr1.3:53486611-53486630 | MS.gene82319:intron | 20.0% |
| !!! | TTTTTGCTTTATTCTTTTAG+AGG | + | chr1.3:53486925-53486944 | MS.gene82319:intron | 20.0% |
| ! | AAAAGTAAATGACTTTCCAT+TGG | - | chr1.3:53485955-53485974 | None:intergenic | 25.0% |
| ! | AAGACTAAAAACATATCCAA+TGG | + | chr1.3:53485936-53485955 | MS.gene82319:intron | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | + | chr1.3:53489564-53489583 | MS.gene82319:CDS | 25.0% |
| ! | ATGTACTTAATGCCTTTAAT+GGG | - | chr1.3:53489403-53489422 | None:intergenic | 25.0% |
| ! | CAAATAATCTCCATCAATAT+GGG | - | chr1.3:53488905-53488924 | None:intergenic | 25.0% |
| ! | TAATTACAGCTTTACACATT+TGG | + | chr1.3:53488824-53488843 | MS.gene82319:intron | 25.0% |
| ! | TATGTACTTAATGCCTTTAA+TGG | - | chr1.3:53489404-53489423 | None:intergenic | 25.0% |
| ! | TCAAATAATCTCCATCAATA+TGG | - | chr1.3:53488906-53488925 | None:intergenic | 25.0% |
| ! | TTCGTATGATAAGTAAATAG+GGG | + | chr1.3:53485842-53485861 | MS.gene82319:intron | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1.3:53488359-53488378 | MS.gene82319:CDS | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | + | chr1.3:53489501-53489520 | MS.gene82319:CDS | 25.0% |
| !! | CGAAATTAAATATTTTGCAG+AGG | + | chr1.3:53487399-53487418 | MS.gene82319:intron | 25.0% |
| !! | GAAGAAAATACTTCCATTTT+GGG | - | chr1.3:53488883-53488902 | None:intergenic | 25.0% |
| !! | TAGAAGTTCCCAATTTTATA+GGG | - | chr1.3:53487118-53487137 | None:intergenic | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | - | chr1.3:53487119-53487138 | None:intergenic | 25.0% |
| !!! | TTTTTGGTCCCTATAAAATT+GGG | + | chr1.3:53487107-53487126 | MS.gene82319:intron | 25.0% |
| !!! | TTTTTTTAGAGGTGAAGAAT+TGG | + | chr1.3:53486099-53486118 | MS.gene82319:intron | 25.0% |
| AAAACCTGTCAAACTATTCA+TGG | + | chr1.3:53488187-53488206 | MS.gene82319:CDS | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | + | chr1.3:53488188-53488207 | MS.gene82319:CDS | 30.0% | |
| AAAGATGTCGCAATCAATAA+AGG | + | chr1.3:53490098-53490117 | MS.gene82319:CDS | 30.0% | |
| ACATCATAATCAGCAAATTG+AGG | + | chr1.3:53488769-53488788 | MS.gene82319:CDS | 30.0% | |
| ACATTTATATTGCACGATGA+TGG | + | chr1.3:53488103-53488122 | MS.gene82319:intron | 30.0% | |
| AGATTAAATGGGTACGTATT+CGG | + | chr1.3:53489617-53489636 | MS.gene82319:intron | 30.0% | |
| AGCTTAATTGGTCAAAAAGA+GGG | - | chr1.3:53486782-53486801 | None:intergenic | 30.0% | |
| AGGCATTAAGTACATAAAAG+AGG | + | chr1.3:53489408-53489427 | MS.gene82319:CDS | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1.3:53488507-53488526 | None:intergenic | 30.0% | |
| ATGGACAAAACACTTAGAAA+TGG | - | chr1.3:53486387-53486406 | None:intergenic | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | + | chr1.3:53490133-53490152 | MS.gene82319:CDS | 30.0% | |
| CAAAATTGAGATGTCTTCTT+GGG | - | chr1.3:53489233-53489252 | None:intergenic | 30.0% | |
| CAATGACACAAGAATTAATG+TGG | + | chr1.3:53489563-53489582 | MS.gene82319:CDS | 30.0% | |
| CAGAATATAACAAGTTACTC+AGG | + | chr1.3:53488940-53488959 | MS.gene82319:CDS | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | + | chr1.3:53488416-53488435 | MS.gene82319:CDS | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | + | chr1.3:53489761-53489780 | MS.gene82319:CDS | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | - | chr1.3:53488304-53488323 | None:intergenic | 30.0% | |
| GAAAAGTCTGTCATCATTTA+TGG | + | chr1.3:53489747-53489766 | MS.gene82319:CDS | 30.0% | |
| GGAGTCATTGAATATTTAAC+AGG | + | chr1.3:53486120-53486139 | MS.gene82319:intron | 30.0% | |
| TAACCCAATATACATCAACT+GGG | - | chr1.3:53488506-53488525 | None:intergenic | 30.0% | |
| TAGCTTAATTGGTCAAAAAG+AGG | - | chr1.3:53486783-53486802 | None:intergenic | 30.0% | |
| TATAATTATCAGGGACATCA+AGG | + | chr1.3:53485716-53485735 | MS.gene82319:intron | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | - | chr1.3:53489234-53489253 | None:intergenic | 30.0% | |
| TGTTTAAGTATGTACAAGGT+TGG | + | chr1.3:53489113-53489132 | MS.gene82319:intron | 30.0% | |
| ! | AATAGTTTGACAGGTTTTTC+AGG | - | chr1.3:53488185-53488204 | None:intergenic | 30.0% |
| ! | AATCTCTTTTCAACATTGCT+GGG | + | chr1.3:53485496-53485515 | MS.gene82319:CDS | 30.0% |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1.3:53488499-53488518 | MS.gene82319:CDS | 30.0% |
| ! | AGTGTTTGAAGCAATATCAA+AGG | - | chr1.3:53486531-53486550 | None:intergenic | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1.3:53488500-53488519 | MS.gene82319:CDS | 30.0% |
| ! | CAGCTCTAATAGTTATTTAG+AGG | + | chr1.3:53486650-53486669 | MS.gene82319:intron | 30.0% |
| ! | CATTCCATATGATTCAAGTT+TGG | + | chr1.3:53489500-53489519 | MS.gene82319:CDS | 30.0% |
| ! | GGAAGAAAATACTTCCATTT+TGG | - | chr1.3:53488884-53488903 | None:intergenic | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1.3:53488892-53488911 | MS.gene82319:intron | 30.0% |
| ! | TAGATAAGAGACTTTTGATG+TGG | - | chr1.3:53486267-53486286 | None:intergenic | 30.0% |
| ! | TTATCTTTGGAAACTGAAGA+AGG | + | chr1.3:53489722-53489741 | MS.gene82319:intron | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | + | chr1.3:53489502-53489521 | MS.gene82319:CDS | 30.0% |
| ! | TTTGAAGCAAATTAACTCTG+AGG | + | chr1.3:53485799-53485818 | MS.gene82319:CDS | 30.0% |
| ! | TTTTTGACAAGTGAGAAGAA+AGG | + | chr1.3:53487885-53487904 | MS.gene82319:intron | 30.0% |
| !! | ATCAAGTTTTGACGAGTTTA+AGG | + | chr1.3:53486745-53486764 | MS.gene82319:intron | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1.3:53489548-53489567 | None:intergenic | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1.3:53488983-53489002 | MS.gene82319:CDS | 30.0% |
| !! | TATCGAAGTGTTGAAAAAGA+AGG | + | chr1.3:53489174-53489193 | MS.gene82319:CDS | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | - | chr1.3:53489554-53489573 | None:intergenic | 30.0% |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | + | chr1.3:53487106-53487125 | MS.gene82319:intron | 30.0% |
| !!! | TGTTTAAGGTGCTGATATTT+TGG | + | chr1.3:53488997-53489016 | MS.gene82319:CDS | 30.0% |
| !!! | TTTGTTTTGTCAACCCAAAA+TGG | + | chr1.3:53488867-53488886 | MS.gene82319:intron | 30.0% |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | + | chr1.3:53488715-53488734 | MS.gene82319:intron | 30.0% |
| AACACTTCCATAATTTCCGT+CGG | - | chr1.3:53488981-53489000 | None:intergenic | 35.0% | |
| AAGGTGAGAGCAAATATGAA+CGG | - | chr1.3:53490168-53490187 | None:intergenic | 35.0% | |
| AAGTCTGTCATCATTTATGG+AGG | + | chr1.3:53489750-53489769 | MS.gene82319:CDS | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1.3:53489376-53489395 | None:intergenic | 35.0% | |
| ACAATTTGATCAAGGCAACT+TGG | + | chr1.3:53488388-53488407 | MS.gene82319:CDS | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | + | chr1.3:53489766-53489785 | MS.gene82319:CDS | 35.0% | |
| ATTTGCTTCAAAGTACACAG+CGG | - | chr1.3:53485791-53485810 | None:intergenic | 35.0% | |
| CAAATGTGGTTAACAACTTC+TGG | + | chr1.3:53489889-53489908 | MS.gene82319:CDS | 35.0% | |
| CAGAACGTTATCAACAACAT+GGG | - | chr1.3:53485541-53485560 | None:intergenic | 35.0% | |
| CAGAAGTTGTTAACCACATT+TGG | - | chr1.3:53489891-53489910 | None:intergenic | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | - | chr1.3:53488535-53488554 | None:intergenic | 35.0% | |
| GGACTCAACACAACAAATAA+AGG | - | chr1.3:53489454-53489473 | None:intergenic | 35.0% | |
| TAATGAACACTTCCATTGTG+CGG | - | chr1.3:53490247-53490266 | None:intergenic | 35.0% | |
| TATAAAAGAGGGCAAAAGCT+CGG | + | chr1.3:53487055-53487074 | MS.gene82319:intron | 35.0% | |
| TCACAATGCACTATACAGAT+TGG | + | chr1.3:53488801-53488820 | MS.gene82319:CDS | 35.0% | |
| TCAGCGTAGATCTTTCTTAA+GGG | + | chr1.3:53487990-53488009 | MS.gene82319:intron | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | - | chr1.3:53489475-53489494 | None:intergenic | 35.0% | |
| TTAGAGCTGTAGCAAAGAAT+TGG | - | chr1.3:53486639-53486658 | None:intergenic | 35.0% | |
| TTAGTGGAACCATCATAGAT+GGG | - | chr1.3:53489041-53489060 | None:intergenic | 35.0% | |
| TTCAGCGTAGATCTTTCTTA+AGG | + | chr1.3:53487989-53488008 | MS.gene82319:intron | 35.0% | |
| TTTAGTGGAACCATCATAGA+TGG | - | chr1.3:53489042-53489061 | None:intergenic | 35.0% | |
| TTTCGTACAAAACTGAGACA+GGG | + | chr1.3:53489988-53490007 | MS.gene82319:CDS | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1.3:53488198-53488217 | MS.gene82319:CDS | 35.0% |
| ! | AGGCAGGATTTATCTCATTT+TGG | + | chr1.3:53488735-53488754 | MS.gene82319:CDS | 35.0% |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1.3:53489511-53489530 | MS.gene82319:CDS | 35.0% |
| ! | CATCAAACTTAGTGTCACTA+TGG | - | chr1.3:53485473-53485492 | None:intergenic | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1.3:53489540-53489559 | None:intergenic | 35.0% |
| ! | GAATCTCTTTTCAACATTGC+TGG | + | chr1.3:53485495-53485514 | MS.gene82319:CDS | 35.0% |
| ! | GGTTAACAACTTCTGGAAAA+AGG | + | chr1.3:53489896-53489915 | MS.gene82319:CDS | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1.3:53489541-53489560 | None:intergenic | 35.0% |
| ! | TTCAATTGACCTGTTTTGCT+TGG | + | chr1.3:53489854-53489873 | MS.gene82319:CDS | 35.0% |
| !! | ACTACTAACCAGTGTTTTAG+TGG | - | chr1.3:53489057-53489076 | None:intergenic | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1.3:53489940-53489959 | None:intergenic | 35.0% |
| !!! | ACTTTTAAAGTGTGGAGAAG+TGG | + | chr1.3:53487673-53487692 | MS.gene82319:intron | 35.0% |
| !!! | CTTTTAAAGTGTGGAGAAGT+GGG | + | chr1.3:53487674-53487693 | MS.gene82319:intron | 35.0% |
| !!! | GATCACACACTTTTAAAGTG+TGG | + | chr1.3:53487665-53487684 | MS.gene82319:intron | 35.0% |
| !!! | TTTTAAAGTGTGGAGAAGTG+GGG | + | chr1.3:53487675-53487694 | MS.gene82319:intron | 35.0% |
| !!! | TTTTTGGTTCAATAGCCTAG+TGG | + | chr1.3:53487639-53487658 | MS.gene82319:intron | 35.0% |
| AACAAACACTGTTACACAGC+AGG | + | chr1.3:53489953-53489972 | MS.gene82319:CDS | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1.3:53489285-53489304 | MS.gene82319:CDS | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | + | chr1.3:53485719-53485738 | MS.gene82319:intron | 40.0% | |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1.3:53488980-53488999 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | - | chr1.3:53489835-53489854 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1.3:53489314-53489333 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | - | chr1.3:53485427-53485446 | None:intergenic | 40.0% | |
| CAACAGTTCACTAAGTATGC+TGG | + | chr1.3:53489792-53489811 | MS.gene82319:CDS | 40.0% | |
| CAACCCATGAATAGTTTGAC+AGG | - | chr1.3:53488194-53488213 | None:intergenic | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | - | chr1.3:53485413-53485432 | None:intergenic | 40.0% | |
| CAGCAACATTAGGAATCTCA+AGG | - | chr1.3:53490187-53490206 | None:intergenic | 40.0% | |
| CATCACTTTGCACCCATTAA+AGG | + | chr1.3:53489388-53489407 | MS.gene82319:CDS | 40.0% | |
| CATTGACCTTATCCCCATTA+TGG | - | chr1.3:53490283-53490302 | None:intergenic | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | - | chr1.3:53489507-53489526 | None:intergenic | 40.0% | |
| CTGGACACTCGATAAAATCT+GGG | - | chr1.3:53490217-53490236 | None:intergenic | 40.0% | |
| CTTGAGATTCCTAATGTTGC+TGG | + | chr1.3:53490185-53490204 | MS.gene82319:CDS | 40.0% | |
| CTTTCGTACAAAACTGAGAC+AGG | + | chr1.3:53489987-53490006 | MS.gene82319:CDS | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | + | chr1.3:53488291-53488310 | MS.gene82319:CDS | 40.0% | |
| GCAGAACGTTATCAACAACA+TGG | - | chr1.3:53485542-53485561 | None:intergenic | 40.0% | |
| GCTCATCAGACATGGTTAAA+GGG | - | chr1.3:53485419-53485438 | None:intergenic | 40.0% | |
| GGAGCTCAACAATTTGATCA+AGG | + | chr1.3:53488380-53488399 | MS.gene82319:CDS | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1.3:53485369-53485388 | MS.gene82319:CDS | 40.0% | |
| TAACCTGAGTTTGTCTAACG+TGG | + | chr1.3:53486969-53486988 | MS.gene82319:intron | 40.0% | |
| TAATAGCGGCATCATTTGCT+AGG | - | chr1.3:53489821-53489840 | None:intergenic | 40.0% | |
| TACCAACTGAGCTACACTTA+CGG | + | chr1.3:53487745-53487764 | MS.gene82319:intron | 40.0% | |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1.3:53489596-53489615 | None:intergenic | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1.3:53489313-53489332 | None:intergenic | 40.0% | |
| TCTCCCTCTCTAATAACAAC+TGG | + | chr1.3:53486009-53486028 | MS.gene82319:intron | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | - | chr1.3:53490218-53490237 | None:intergenic | 40.0% | |
| TGATGGTTCCACTAAAACAC+TGG | + | chr1.3:53489046-53489065 | MS.gene82319:CDS | 40.0% | |
| TGCTCATCAGACATGGTTAA+AGG | - | chr1.3:53485420-53485439 | None:intergenic | 40.0% | |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1.3:53485368-53485387 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1.3:53489597-53489616 | None:intergenic | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | - | chr1.3:53489820-53489839 | None:intergenic | 40.0% |
| ! | AGATGTGCAGCTAGCTTAAT+TGG | - | chr1.3:53486794-53486813 | None:intergenic | 40.0% |
| ! | AGCTACAAGTGTTGCCATAA+TGG | + | chr1.3:53490266-53490285 | MS.gene82319:CDS | 40.0% |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1.3:53488297-53488316 | None:intergenic | 40.0% |
| ! | CATAATGGGGATAAGGTCAA+TGG | + | chr1.3:53490281-53490300 | MS.gene82319:CDS | 40.0% |
| ! | CATGTCTGATGAGCACATTT+TGG | + | chr1.3:53485425-53485444 | MS.gene82319:CDS | 40.0% |
| ! | CTACAAGTGTTGCCATAATG+GGG | + | chr1.3:53490268-53490287 | MS.gene82319:CDS | 40.0% |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1.3:53489510-53489529 | MS.gene82319:CDS | 40.0% |
| ! | GCTACAAGTGTTGCCATAAT+GGG | + | chr1.3:53490267-53490286 | MS.gene82319:CDS | 40.0% |
| ! | GGGATTTTTCCAGCAACATT+AGG | - | chr1.3:53490197-53490216 | None:intergenic | 40.0% |
| ! | GGTCCAGTTGTTATTAGAGA+GGG | - | chr1.3:53486015-53486034 | None:intergenic | 40.0% |
| ! | GTGGATTAATGTTATCCAGG+TGG | - | chr1.3:53485751-53485770 | None:intergenic | 40.0% |
| ! | TCTTTGGAAACTGAAGAAGG+AGG | + | chr1.3:53489725-53489744 | MS.gene82319:intron | 40.0% |
| ! | TTTGTTGTGTTGAGTCCACA+AGG | + | chr1.3:53489457-53489476 | MS.gene82319:CDS | 40.0% |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1.3:53488596-53488615 | MS.gene82319:intron | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | - | chr1.3:53485754-53485773 | None:intergenic | 40.0% |
| !! | TTGTATGCTATTTCCTCACC+TGG | - | chr1.3:53488147-53488166 | None:intergenic | 40.0% |
| !!! | CGATGTTTTTTCAGTGCTTC+AGG | - | chr1.3:53488348-53488367 | None:intergenic | 40.0% |
| AACTGTAGTCCCATGACCAA+CGG | - | chr1.3:53490048-53490067 | None:intergenic | 45.0% | |
| AAGTGTGTGATCTAGCCACT+AGG | - | chr1.3:53487657-53487676 | None:intergenic | 45.0% | |
| ACCAACTGAGCTACACTTAC+GGG | + | chr1.3:53487746-53487765 | MS.gene82319:intron | 45.0% | |
| ACCAGAAGTCTCCATACTCA+AGG | - | chr1.3:53488248-53488267 | None:intergenic | 45.0% | |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1.3:53488489-53488508 | None:intergenic | 45.0% | |
| ATGATGGCAGATGTCATGCA+AGG | + | chr1.3:53488119-53488138 | MS.gene82319:intron | 45.0% | |
| ATTGTGACTTCCGTTGGTCA+TGG | + | chr1.3:53490035-53490054 | MS.gene82319:CDS | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1.3:53488979-53488998 | None:intergenic | 45.0% | |
| CCAAAAGCTCCCATCTATGA+TGG | + | chr1.3:53489029-53489048 | MS.gene82319:CDS | 45.0% | |
| CCAGAAGTCTCCATACTCAA+GGG | - | chr1.3:53488247-53488266 | None:intergenic | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1.3:53489291-53489310 | None:intergenic | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1.3:53489284-53489303 | MS.gene82319:CDS | 45.0% | |
| GGAAGTCACAATAGACCCTT+TGG | - | chr1.3:53490027-53490046 | None:intergenic | 45.0% | |
| GGTGGGCAATTGTAACCAAA+GGG | + | chr1.3:53490009-53490028 | MS.gene82319:CDS | 45.0% | |
| GTACAAAACTGAGACAGGGT+GGG | + | chr1.3:53489992-53490011 | MS.gene82319:CDS | 45.0% | |
| GTTGAGACTCCAAGCAAAAC+AGG | - | chr1.3:53489866-53489885 | None:intergenic | 45.0% | |
| TAAATCCTGCCTCTTATCCC+TGG | - | chr1.3:53488727-53488746 | None:intergenic | 45.0% | |
| TACCAGGGACAATGTTTGCA+GGG | - | chr1.3:53487723-53487742 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1.3:53488971-53488990 | MS.gene82319:CDS | 45.0% | |
| TTGTGACTTCCGTTGGTCAT+GGG | + | chr1.3:53490036-53490055 | MS.gene82319:CDS | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | - | chr1.3:53489032-53489051 | None:intergenic | 45.0% |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1.3:53488288-53488307 | None:intergenic | 45.0% |
| ! | GGGTCCAGTTGTTATTAGAG+AGG | - | chr1.3:53486016-53486035 | None:intergenic | 45.0% |
| ! | GTGTTGCCATAATGGGGATA+AGG | + | chr1.3:53490274-53490293 | MS.gene82319:CDS | 45.0% |
| ! | TTTTTCCAGGGATAAGAGGC+AGG | + | chr1.3:53488719-53488738 | MS.gene82319:intron | 45.0% |
| !! | GCTTCAGGCTTTGAAAGTTG+AGG | - | chr1.3:53488333-53488352 | None:intergenic | 45.0% |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | + | chr1.3:53488234-53488253 | MS.gene82319:CDS | 45.0% |
| !!! | GACTACAGTTTTGAAGACCG+TGG | + | chr1.3:53490058-53490077 | MS.gene82319:CDS | 45.0% |
| !!! | TACAGTTTTGAAGACCGTGG+CGG | + | chr1.3:53490061-53490080 | MS.gene82319:CDS | 45.0% |
| !! | AATATTAAAATTTACTAAAA+AGG | + | chr1.3:53487813-53487832 | MS.gene82319:intron | 5.0% |
| !! | AATTATATACATTTATTTAT+GGG | - | chr1.3:53486242-53486261 | None:intergenic | 5.0% |
| !! | CAAAAAAAAAAAAAAATTTA+GGG | - | chr1.3:53487625-53487644 | None:intergenic | 5.0% |
| !! | TAATTATATACATTTATTTA+TGG | - | chr1.3:53486243-53486262 | None:intergenic | 5.0% |
| !! | TTTAGTAAAATAAAAAAAAT+TGG | + | chr1.3:53487032-53487051 | MS.gene82319:intron | 5.0% |
| !! | TTTCATTATTATAAAATTTA+GGG | - | chr1.3:53487780-53487799 | None:intergenic | 5.0% |
| !!! | AAATTTTATAATAATGAAAA+TGG | + | chr1.3:53487781-53487800 | MS.gene82319:intron | 5.0% |
| !!! | ATTATAACTTTTATTTTAAA+TGG | - | chr1.3:53486700-53486719 | None:intergenic | 5.0% |
| !!! | TTTTCATTATTATAAAATTT+AGG | - | chr1.3:53487781-53487800 | None:intergenic | 5.0% |
| AACGTGGACCTCCGAAGAAA+GGG | + | chr1.3:53486985-53487004 | MS.gene82319:intron | 50.0% | |
| AATTGACAAGGGCCTCCCTT+TGG | - | chr1.3:53487013-53487032 | None:intergenic | 50.0% | |
| ACCAGGGACAATGTTTGCAG+GGG | - | chr1.3:53487722-53487741 | None:intergenic | 50.0% | |
| CAACTCGCGTCATGACATCA+AGG | + | chr1.3:53488446-53488465 | MS.gene82319:CDS | 50.0% | |
| CCATTTGTCAAACTCCGCCA+CGG | - | chr1.3:53490078-53490097 | None:intergenic | 50.0% | |
| CCCTTGAGTATGGAGACTTC+TGG | + | chr1.3:53488244-53488263 | MS.gene82319:CDS | 50.0% | |
| CGTACAAAACTGAGACAGGG+TGG | + | chr1.3:53489991-53490010 | MS.gene82319:CDS | 50.0% | |
| CTACCAGGGACAATGTTTGC+AGG | - | chr1.3:53487724-53487743 | None:intergenic | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1.3:53488962-53488981 | MS.gene82319:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1.3:53489297-53489316 | MS.gene82319:CDS | 50.0% | |
| GGAGTCTCAACAGCCAAATG+TGG | + | chr1.3:53489875-53489894 | MS.gene82319:CDS | 50.0% | |
| GGGTCTATTGTGACTTCCGT+TGG | + | chr1.3:53490029-53490048 | MS.gene82319:CDS | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1.3:53490008-53490027 | MS.gene82319:CDS | 50.0% | |
| GGTCCACGTTAGACAAACTC+AGG | - | chr1.3:53486975-53486994 | None:intergenic | 50.0% | |
| TAACGTGGACCTCCGAAGAA+AGG | + | chr1.3:53486984-53487003 | MS.gene82319:intron | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1.3:53490232-53490251 | MS.gene82319:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1.3:53490236-53490255 | None:intergenic | 50.0% | |
| TCCCGTAAGTGTAGCTCAGT+TGG | - | chr1.3:53487750-53487769 | None:intergenic | 50.0% | |
| TCCCTTTGGACCCCTTTCTT+CGG | - | chr1.3:53486999-53487018 | None:intergenic | 50.0% | |
| TCCGAAGAAAGGGGTCCAAA+GGG | + | chr1.3:53486995-53487014 | MS.gene82319:intron | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | - | chr1.3:53488284-53488303 | None:intergenic | 50.0% |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1.3:53489579-53489598 | MS.gene82319:CDS | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | - | chr1.3:53487738-53487757 | None:intergenic | 50.0% |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | - | chr1.3:53487739-53487758 | None:intergenic | 50.0% |
| ACGTGGACCTCCGAAGAAAG+GGG | + | chr1.3:53486986-53487005 | MS.gene82319:intron | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+TGG | - | chr1.3:53485773-53485792 | None:intergenic | 55.0% | |
| CTCCGAAGAAAGGGGTCCAA+AGG | + | chr1.3:53486994-53487013 | MS.gene82319:intron | 55.0% | |
| CTTTGGACCCCTTTCTTCGG+AGG | - | chr1.3:53486996-53487015 | None:intergenic | 55.0% | |
| GAAGAAAGGGGTCCAAAGGG+AGG | + | chr1.3:53486998-53487017 | MS.gene82319:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1.3:53489305-53489324 | MS.gene82319:CDS | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | - | chr1.3:53485770-53485789 | None:intergenic | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+CGG | + | chr1.3:53487682-53487701 | MS.gene82319:intron | 55.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | + | chr1.3:53485724-53485743 | MS.gene82319:intron | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1.3:53488477-53488496 | None:intergenic | 55.0% | |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1.3:53488473-53488492 | MS.gene82319:CDS | 55.0% | |
| TGTGGAGAAGTGGGGAATCC+GGG | + | chr1.3:53487683-53487702 | MS.gene82319:intron | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1.3:53489300-53489319 | MS.gene82319:CDS | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | + | chr1.3:53488126-53488145 | MS.gene82319:intron | 55.0% |
| ! | CCGTGGCGGAGTTTGACAAA+TGG | + | chr1.3:53490075-53490094 | MS.gene82319:CDS | 55.0% |
| GACAATGTTTGCAGGGGCCG+GGG | - | chr1.3:53487716-53487735 | None:intergenic | 60.0% | |
| GCCCCTGCAAACATTGTCCC+TGG | + | chr1.3:53487718-53487737 | MS.gene82319:intron | 60.0% | |
| GGACAATGTTTGCAGGGGCC+GGG | - | chr1.3:53487717-53487736 | None:intergenic | 60.0% | |
| GGGACAATGTTTGCAGGGGC+CGG | - | chr1.3:53487718-53487737 | None:intergenic | 60.0% | |
| GTGGAGAAGTGGGGAATCCG+GGG | + | chr1.3:53487684-53487703 | MS.gene82319:intron | 60.0% | |
| TCAAGGAGGTCTGGACCACC+TGG | + | chr1.3:53485733-53485752 | MS.gene82319:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1.3:53488131-53488150 | MS.gene82319:CDS | 60.0% |
| GGAATCCGGGGTTCGAACCC+CGG | + | chr1.3:53487696-53487715 | MS.gene82319:intron | 65.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr1.3:53487704-53487723 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53485357 | 53490313 | 53485357 | ID=MS.gene82319 |
| chr1.3 | mRNA | 53485357 | 53490313 | 53485357 | ID=MS.gene82319.t1;Parent=MS.gene82319 |
| chr1.3 | exon | 53485357 | 53485563 | 53485357 | ID=MS.gene82319.t1.exon1;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53485357 | 53485563 | 53485357 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| chr1.3 | exon | 53485728 | 53485820 | 53485728 | ID=MS.gene82319.t1.exon2;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53485728 | 53485820 | 53485728 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| chr1.3 | exon | 53488129 | 53488577 | 53488129 | ID=MS.gene82319.t1.exon3;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53488129 | 53488577 | 53488129 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| chr1.3 | exon | 53488728 | 53488822 | 53488728 | ID=MS.gene82319.t1.exon4;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53488728 | 53488822 | 53488728 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| chr1.3 | exon | 53488934 | 53489067 | 53488934 | ID=MS.gene82319.t1.exon5;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53488934 | 53489067 | 53488934 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| chr1.3 | exon | 53489169 | 53489627 | 53489169 | ID=MS.gene82319.t1.exon6;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53489169 | 53489627 | 53489169 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| chr1.3 | exon | 53489741 | 53490313 | 53489741 | ID=MS.gene82319.t1.exon7;Parent=MS.gene82319.t1 |
| chr1.3 | CDS | 53489741 | 53490313 | 53489741 | ID=cds.MS.gene82319.t1;Parent=MS.gene82319.t1 |
| Gene Sequence |
| Protein sequence |
