Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82562.t1 | XP_004486584.1 | 85.6 | 971 | 132 | 3 | 2 | 966 | 123 | 1091 | 0.00E+00 | 1582.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82562.t1 | Q9LU41 | 73.7 | 974 | 243 | 4 | 1 | 966 | 118 | 1086 | 0.0e+00 | 1361.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82562.t1 | A0A1S2XB13 | 85.6 | 971 | 132 | 3 | 2 | 966 | 123 | 1091 | 0.0e+00 | 1582.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049609 | MS.gene82562 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene82562 | 0.807908 | 4.02E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene82562 | 0.810864 | 9.32E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene82562 | 0.812547 | 4.01E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene82562 | 0.807762 | 4.31E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene82562 | 0.816461 | 5.46E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene82562 | 0.818373 | 2.03E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene82562 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene82562 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene82562 | 0.849796 | 2.57E-60 | -1.69E-46 |
| MS.gene052503 | MS.gene82562 | 0.811774 | 5.92E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene82562 | 0.851716 | 7.40E-61 | -1.69E-46 |
| MS.gene052823 | MS.gene82562 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene82562 | 0.81341 | 2.60E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene82562 | 0.818494 | 1.90E-52 | -1.69E-46 |
| MS.gene053873 | MS.gene82562 | 0.818718 | 1.69E-52 | -1.69E-46 |
| MS.gene054927 | MS.gene82562 | 0.819762 | 9.80E-53 | -1.69E-46 |
| MS.gene055289 | MS.gene82562 | 0.834424 | 3.02E-56 | -1.69E-46 |
| MS.gene057048 | MS.gene82562 | 0.839025 | 2.03E-57 | -1.69E-46 |
| MS.gene057310 | MS.gene82562 | 0.817086 | 3.96E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene82562 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene82562 | 0.811777 | 5.91E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene82562 | 0.806516 | 7.92E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene82562 | 0.806945 | 6.43E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene82562 | 0.800675 | 1.29E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15302 | gene | 1003 | 12674 | 1003 | ID=MS.gene82562 |
| 15302 | mRNA | 1003 | 12674 | 1003 | ID=MS.gene82562.t1;Parent=MS.gene82562 |
| 15302 | exon | 1003 | 1121 | 1003 | ID=MS.gene82562.t1.exon1;Parent=MS.gene82562.t1 |
| 15302 | CDS | 1003 | 1121 | 1003 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 1209 | 1340 | 1209 | ID=MS.gene82562.t1.exon2;Parent=MS.gene82562.t1 |
| 15302 | CDS | 1209 | 1340 | 1209 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 1436 | 1525 | 1436 | ID=MS.gene82562.t1.exon3;Parent=MS.gene82562.t1 |
| 15302 | CDS | 1436 | 1525 | 1436 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 1763 | 1821 | 1763 | ID=MS.gene82562.t1.exon4;Parent=MS.gene82562.t1 |
| 15302 | CDS | 1763 | 1821 | 1763 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 2283 | 2346 | 2283 | ID=MS.gene82562.t1.exon5;Parent=MS.gene82562.t1 |
| 15302 | CDS | 2283 | 2346 | 2283 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 2430 | 2513 | 2430 | ID=MS.gene82562.t1.exon6;Parent=MS.gene82562.t1 |
| 15302 | CDS | 2430 | 2513 | 2430 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 2596 | 2673 | 2596 | ID=MS.gene82562.t1.exon7;Parent=MS.gene82562.t1 |
| 15302 | CDS | 2596 | 2673 | 2596 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 2753 | 2824 | 2753 | ID=MS.gene82562.t1.exon8;Parent=MS.gene82562.t1 |
| 15302 | CDS | 2753 | 2824 | 2753 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 3168 | 3251 | 3168 | ID=MS.gene82562.t1.exon9;Parent=MS.gene82562.t1 |
| 15302 | CDS | 3168 | 3251 | 3168 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 3364 | 3446 | 3364 | ID=MS.gene82562.t1.exon10;Parent=MS.gene82562.t1 |
| 15302 | CDS | 3364 | 3446 | 3364 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 3539 | 3647 | 3539 | ID=MS.gene82562.t1.exon11;Parent=MS.gene82562.t1 |
| 15302 | CDS | 3539 | 3647 | 3539 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 3740 | 3795 | 3740 | ID=MS.gene82562.t1.exon12;Parent=MS.gene82562.t1 |
| 15302 | CDS | 3740 | 3795 | 3740 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 3912 | 3954 | 3912 | ID=MS.gene82562.t1.exon13;Parent=MS.gene82562.t1 |
| 15302 | CDS | 3912 | 3954 | 3912 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 4043 | 4126 | 4043 | ID=MS.gene82562.t1.exon14;Parent=MS.gene82562.t1 |
| 15302 | CDS | 4043 | 4126 | 4043 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 5003 | 5143 | 5003 | ID=MS.gene82562.t1.exon15;Parent=MS.gene82562.t1 |
| 15302 | CDS | 5003 | 5143 | 5003 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 5370 | 5435 | 5370 | ID=MS.gene82562.t1.exon16;Parent=MS.gene82562.t1 |
| 15302 | CDS | 5370 | 5435 | 5370 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 5537 | 5635 | 5537 | ID=MS.gene82562.t1.exon17;Parent=MS.gene82562.t1 |
| 15302 | CDS | 5537 | 5635 | 5537 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 5835 | 5945 | 5835 | ID=MS.gene82562.t1.exon18;Parent=MS.gene82562.t1 |
| 15302 | CDS | 5835 | 5945 | 5835 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 6242 | 6409 | 6242 | ID=MS.gene82562.t1.exon19;Parent=MS.gene82562.t1 |
| 15302 | CDS | 6242 | 6409 | 6242 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 6673 | 6732 | 6673 | ID=MS.gene82562.t1.exon20;Parent=MS.gene82562.t1 |
| 15302 | CDS | 6673 | 6732 | 6673 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 6918 | 7082 | 6918 | ID=MS.gene82562.t1.exon21;Parent=MS.gene82562.t1 |
| 15302 | CDS | 6918 | 7082 | 6918 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 7263 | 7379 | 7263 | ID=MS.gene82562.t1.exon22;Parent=MS.gene82562.t1 |
| 15302 | CDS | 7263 | 7379 | 7263 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 9184 | 9282 | 9184 | ID=MS.gene82562.t1.exon23;Parent=MS.gene82562.t1 |
| 15302 | CDS | 9184 | 9282 | 9184 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 10465 | 10602 | 10465 | ID=MS.gene82562.t1.exon24;Parent=MS.gene82562.t1 |
| 15302 | CDS | 10465 | 10602 | 10465 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 10692 | 10792 | 10692 | ID=MS.gene82562.t1.exon25;Parent=MS.gene82562.t1 |
| 15302 | CDS | 10692 | 10792 | 10692 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 11371 | 11416 | 11371 | ID=MS.gene82562.t1.exon26;Parent=MS.gene82562.t1 |
| 15302 | CDS | 11371 | 11416 | 11371 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 11523 | 11651 | 11523 | ID=MS.gene82562.t1.exon27;Parent=MS.gene82562.t1 |
| 15302 | CDS | 11523 | 11651 | 11523 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 12143 | 12250 | 12143 | ID=MS.gene82562.t1.exon28;Parent=MS.gene82562.t1 |
| 15302 | CDS | 12143 | 12250 | 12143 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 12338 | 12429 | 12338 | ID=MS.gene82562.t1.exon29;Parent=MS.gene82562.t1 |
| 15302 | CDS | 12338 | 12429 | 12338 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| 15302 | exon | 12569 | 12674 | 12569 | ID=MS.gene82562.t1.exon30;Parent=MS.gene82562.t1 |
| 15302 | CDS | 12569 | 12674 | 12569 | ID=cds.MS.gene82562.t1;Parent=MS.gene82562.t1 |
| Gene Sequence |
| Protein sequence |
