AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055289


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055289.t1 MTR_7g061840 95.090 611 18 1 1 599 1 611 0.0 1205
MS.gene055289.t1 MTR_3g067935 39.051 653 312 19 1 597 1 623 2.63e-109 342
MS.gene055289.t1 MTR_2g097290 44.469 452 190 15 184 588 270 707 5.33e-93 301
MS.gene055289.t1 MTR_2g097290 42.308 104 50 5 1 99 1 99 1.02e-12 71.6
MS.gene055289.t1 MTR_5g080010 37.077 650 310 18 1 597 1 604 9.95e-91 293
MS.gene055289.t1 MTR_2g097290 36.923 390 191 13 184 529 270 648 6.35e-48 179
MS.gene055289.t1 MTR_2g097290 42.308 104 50 5 1 99 1 99 1.38e-12 71.2
MS.gene055289.t1 MTR_5g080010 31.891 439 216 14 1 397 1 398 1.11e-30 125
MS.gene055289.t1 MTR_2g097290 42.308 104 50 5 1 99 1 99 1.45e-12 70.5
MS.gene055289.t1 MTR_2g097290 33.161 193 91 7 184 344 270 456 8.62e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055289.t1 AT1G07540 40.301 665 280 23 1 596 1 617 3.40e-115 357
MS.gene055289.t1 AT3G46590 38.756 627 265 21 1 598 1 537 1.25e-100 316
MS.gene055289.t1 AT3G46590 38.792 629 267 20 1 598 1 542 1.49e-99 314
MS.gene055289.t1 AT3G46590 38.389 633 265 21 1 598 1 543 1.70e-99 313
MS.gene055289.t1 AT3G12560 38.110 635 315 22 1 595 1 597 5.21e-99 314
MS.gene055289.t1 AT3G12560 38.110 635 315 22 1 595 1 597 5.21e-99 314
MS.gene055289.t1 AT5G13820 36.335 644 344 17 1 597 1 625 5.78e-96 307
MS.gene055289.t1 AT5G13820 36.335 644 344 17 1 597 1 625 5.78e-96 307
MS.gene055289.t1 AT3G46590 50.852 352 125 9 251 598 195 502 5.60e-93 295
MS.gene055289.t1 AT5G59430 43.990 416 174 12 194 594 184 555 3.31e-82 269
MS.gene055289.t1 AT5G59430 43.659 410 172 12 194 588 183 548 1.17e-78 259
MS.gene055289.t1 AT5G59430 43.659 410 172 12 194 588 184 549 1.34e-78 259
MS.gene055289.t1 AT5G59430 43.659 410 172 12 194 588 184 549 1.34e-78 259
MS.gene055289.t1 AT5G59430 43.659 410 172 12 194 588 184 549 1.34e-78 259
MS.gene055289.t1 AT3G53790 75.000 104 25 1 486 588 293 396 4.53e-45 165
MS.gene055289.t1 AT3G53790 29.073 399 133 13 7 398 2 257 1.03e-26 113
MS.gene055289.t1 AT3G46590 44.865 185 69 4 251 434 236 388 3.21e-34 134

Find 137 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACAAGCATTTGATATTT+TGG 0.097321 7.1:-39993445 MS.gene055289:CDS
TCCTTAACCTTTATTGTATC+TGG 0.203390 7.1:+39992610 None:intergenic
TCTTCTTGTACAAGGGTTAA+TGG 0.231394 7.1:-39992136 MS.gene055289:CDS
GAACCAATAGTTGCAGTTTC+AGG 0.263237 7.1:+39991485 None:intergenic
GTTCACGACCAAAACTTTCT+AGG 0.280251 7.1:-39990742 MS.gene055289:intron
AGCTAATGCATCCATGTTAA+TGG 0.287279 7.1:+39990278 None:intergenic
GAATCAAGTAGGATCATTTA+AGG 0.287667 7.1:-39993307 MS.gene055289:CDS
TTCGCAGAAGCAGCATTATC+AGG 0.312880 7.1:+39993378 None:intergenic
ACCTTTATTGTATCTGGTGG+TGG 0.323994 7.1:+39992616 None:intergenic
GTTCCATACCGGCGTAAATC+AGG 0.326139 7.1:-39990252 MS.gene055289:CDS
AATGGTTACCTAGAAAGTTT+TGG 0.349626 7.1:+39990734 None:intergenic
TCTACTTCTAGAACCGAAAA+TGG 0.357304 7.1:+39990195 None:intergenic
CCGAAAATGGCCTCCTGATT+CGG 0.370780 7.1:+39990208 None:intergenic
TCATGTTTCCCTTGCAAACT+AGG 0.375599 7.1:+39993234 None:intergenic
ATTGTATCTGGTGGTGGGTC+AGG 0.376926 7.1:+39992622 None:intergenic
CTCAACATGGTCCCCTCTCT+TGG 0.379703 7.1:-39990360 MS.gene055289:CDS
GATGACAAACGTCATAGGTT+AGG 0.387281 7.1:-39990836 MS.gene055289:CDS
TACCGAATGGTTCCGGTACT+AGG 0.387844 7.1:-39992714 MS.gene055289:CDS
GCATTGTTGTTGAGACCAAT+AGG 0.397180 7.1:+39989316 None:intergenic
ATGATGACGAAAACTTTGTT+AGG 0.398972 7.1:-39992675 MS.gene055289:CDS
GATTCTTTACCGAATGGTTC+CGG 0.401456 7.1:-39992721 MS.gene055289:CDS
TCTTATCTGCTCATGCCTAT+TGG 0.403689 7.1:-39989331 MS.gene055289:CDS
ACTTTGGACAGCGCCGAATC+AGG 0.407176 7.1:-39990221 MS.gene055289:CDS
TCGAGAAGCTCTTGAGGAAC+AGG 0.408362 7.1:+39989359 None:intergenic
ATACCTGAAACTGCAACTAT+TGG 0.409414 7.1:-39991488 MS.gene055289:CDS
TCATGTGGAGAAAGCTTCAT+TGG 0.409924 7.1:-39992767 MS.gene055289:CDS
GTCACAGATGAGAACAATAG+TGG 0.418852 7.1:-39992277 MS.gene055289:intron
CACGTAGGCATCCTTCTTCA+AGG 0.423941 7.1:-39990911 MS.gene055289:CDS
ACCAGATACAATAAAGGTTA+AGG 0.432280 7.1:-39992611 MS.gene055289:CDS
AGAAGTAGAAGCTTTGGTTC+AGG 0.435287 7.1:-39990181 MS.gene055289:CDS
GGTTCTAGAAGTAGAAGCTT+TGG 0.440736 7.1:-39990187 MS.gene055289:CDS
TTTCCTACCGTTACAACCCT+TGG 0.440877 7.1:+39991941 None:intergenic
CATTGGAGGGCCACTTCCGC+AGG 0.443879 7.1:-39992750 MS.gene055289:CDS
CAGTTGATTCTTCTTGTACA+AGG 0.447047 7.1:-39992144 MS.gene055289:CDS
AACTCTGAGTCTTCTGCAAA+AGG 0.448193 7.1:+39993406 None:intergenic
AAGGAGGAGCAATTTGAGAA+TGG 0.454380 7.1:-39993288 MS.gene055289:CDS
CCTTTATTGTATCTGGTGGT+GGG 0.454587 7.1:+39992617 None:intergenic
TTTCATGACAATCATCTTGA+AGG 0.455581 7.1:-39992895 MS.gene055289:CDS
TTTAGGGGAGGGGTACAATC+AGG 0.460652 7.1:-39993488 MS.gene055289:intron
CTAGAGCTTCAAGATCTCCT+AGG 0.464029 7.1:-39993757 MS.gene055289:CDS
ACTTGCAGTGAAGTTGTCTC+TGG 0.465134 7.1:-39993264 MS.gene055289:CDS
CCCACCACCAGATACAATAA+AGG 0.467536 7.1:-39992617 MS.gene055289:CDS
TATGATTATGCAGAAGAGGT+TGG 0.467837 7.1:-39993807 MS.gene055289:CDS
CGTGTCAAAGTGCCGAGCTC+TGG 0.468051 7.1:-39990313 MS.gene055289:CDS
AATCAATACTCCTGCGGAAG+TGG 0.468412 7.1:+39992740 None:intergenic
TGCTTGTATCTGATTGCTGT+CGG 0.468760 7.1:+39993458 None:intergenic
TTGGTCGTGAACCAGTGGTT+AGG 0.470589 7.1:+39990753 None:intergenic
AATATACATGTTTAGGGGAG+GGG 0.471588 7.1:-39993498 MS.gene055289:intron
GACCCTTGTTTCCTAACCAC+TGG 0.473534 7.1:-39990764 MS.gene055289:CDS
TTCCCTGATTTACGCCGGTA+TGG 0.473925 7.1:+39990249 None:intergenic
TGTATCTCGGGAACGTTCTA+CGG 0.481631 7.1:-39990412 MS.gene055289:CDS
AAGGAACATATAATGTATCT+CGG 0.482346 7.1:-39990425 MS.gene055289:CDS
CTCAAGATGACAAACGTCAT+AGG 0.485216 7.1:-39990841 MS.gene055289:CDS
TCGAACTTATGTCGATTTGA+AGG 0.486100 7.1:-39990003 MS.gene055289:intron
GCTTGTATCTGATTGCTGTC+GGG 0.486132 7.1:+39993459 None:intergenic
TCGAAATTCTGCAGGATAAG+TGG 0.488393 7.1:-39989433 MS.gene055289:intron
ATTAAGTAATTTCCTAGTAC+CGG 0.489621 7.1:+39992702 None:intergenic
TAATCTTCTTCCCTTGAAGA+AGG 0.490156 7.1:+39990900 None:intergenic
ATGACAAACGTCATAGGTTA+GGG 0.494107 7.1:-39990835 MS.gene055289:CDS
AAATCAGGGAATTCCTACTT+TGG 0.494182 7.1:-39990237 MS.gene055289:CDS
CATGTTTCCCTTGCAAACTA+GGG 0.496574 7.1:+39993235 None:intergenic
CCGTTACAACCCTTGGACTC+AGG 0.497977 7.1:+39991948 None:intergenic
CTAGGAGATCTTGAAGCTCT+AGG 0.502668 7.1:+39993758 None:intergenic
GATGCAAGTCCTTTCGTGAA+TGG 0.506837 7.1:-39992589 MS.gene055289:intron
ATTCTTTGAGTTCAATTCAG+TGG 0.510021 7.1:+39992651 None:intergenic
CACAGTTCCTGCCATTAACA+TGG 0.513821 7.1:-39990289 MS.gene055289:CDS
TTAACCTTTATTGTATCTGG+TGG 0.516316 7.1:+39992613 None:intergenic
AAGATATGATTATGCAGAAG+AGG 0.522332 7.1:-39993811 None:intergenic
TTCCTAGTACCGGAACCATT+CGG 0.524514 7.1:+39992712 None:intergenic
CATCTTGAGATATCCCGGTC+TGG 0.533217 7.1:+39990855 None:intergenic
CATTAGCTGTGGTTCCATAC+CGG 0.536414 7.1:-39990263 MS.gene055289:CDS
GTCTCCAAGTATAGTTGTCA+CGG 0.537258 7.1:+39990940 None:intergenic
GGTTCTCCTCTCCTTTGTTG+AGG 0.539618 7.1:+39989380 None:intergenic
AGTATTGATTCTTTACCGAA+TGG 0.542611 7.1:-39992727 MS.gene055289:CDS
GGATGTGTCCCTAGTTTGCA+AGG 0.546500 7.1:-39993243 MS.gene055289:CDS
CATAAGTTCGATGCTTTGCA+TGG 0.547294 7.1:+39990015 None:intergenic
AGTTGATTCTTCTTGTACAA+GGG 0.551085 7.1:-39992143 MS.gene055289:CDS
TTATTTGCAGAGGACAGTAA+TGG 0.553373 7.1:-39990966 MS.gene055289:intron
AGGAACATATAATGTATCTC+GGG 0.554305 7.1:-39990424 MS.gene055289:CDS
AGTAAAACTTTGATCCAGAC+CGG 0.558827 7.1:-39990869 MS.gene055289:CDS
TTTGTCATCTTGAGATATCC+CGG 0.559326 7.1:+39990850 None:intergenic
AAAATTGAAAATTGTGCTGA+AGG 0.559691 7.1:-39990387 MS.gene055289:CDS
GAAGCCGTGACAACTATACT+TGG 0.562287 7.1:-39990944 MS.gene055289:CDS
CCTGAGTCCAAGGGTTGTAA+CGG 0.569619 7.1:-39991948 MS.gene055289:intron
AATGCATCCATGTTAATGGC+AGG 0.570258 7.1:+39990282 None:intergenic
GATTCGGCGCTGTCCAAAGT+AGG 0.570894 7.1:+39990224 None:intergenic
CATCGTCCACGTCTGATAGT+TGG 0.571177 7.1:-39992183 MS.gene055289:CDS
TTCATGACAATCATCTTGAA+GGG 0.572585 7.1:-39992894 MS.gene055289:CDS
GAACCAGTGGTTAGGAAACA+AGG 0.575620 7.1:+39990761 None:intergenic
TTCCATACCGGCGTAAATCA+GGG 0.575681 7.1:-39990251 MS.gene055289:CDS
TTTCTAATAATCCATCAGAT+CGG 0.577157 7.1:+39992791 None:intergenic
AGCTGAAGCTTCTCCAAGAG+AGG 0.580581 7.1:+39990347 None:intergenic
AATGGCACGAACCATGGTAC+AGG 0.581155 7.1:-39992118 MS.gene055289:CDS
GATGAAATTCGATTATGTCT+CGG 0.581676 7.1:+39990800 None:intergenic
TCACAGATGAGAACAATAGT+GGG 0.582266 7.1:-39992276 MS.gene055289:intron
AGAAGTTCATCCTGAGTCCA+AGG 0.582995 7.1:-39991958 MS.gene055289:CDS
TAGAGCTTCAAGATCTCCTA+GGG 0.583424 7.1:-39993756 MS.gene055289:intron
GGTACAGGCGGAACGATGCA+TGG 0.584250 7.1:-39992103 MS.gene055289:intron
GCATCGTTCCGCCTGTACCA+TGG 0.584259 7.1:+39992107 None:intergenic
AGGGTTAATGGCACGAACCA+TGG 0.584303 7.1:-39992124 MS.gene055289:CDS
AAGGGAAACATGAAAATCAA+AGG 0.584574 7.1:-39993224 MS.gene055289:intron
ATCTCTCCTCAACAAAGGAG+AGG 0.585008 7.1:-39989386 MS.gene055289:CDS
TGCAACTATTGGTTCGCTGA+AGG 0.585230 7.1:-39991477 MS.gene055289:intron
CAGGAACTGTGACCAGAGCT+CGG 0.586900 7.1:+39990301 None:intergenic
ACTCTGTCGAGAAGCTCTTG+AGG 0.596757 7.1:+39989353 None:intergenic
GTGGAGAAAGCTTCATTGGA+GGG 0.598653 7.1:-39992763 MS.gene055289:CDS
TCATAGGTTAGGGTTCATGT+TGG 0.599261 7.1:-39990825 MS.gene055289:CDS
GCAGGATAAGTGGAAGACAT+TGG 0.603024 7.1:-39989423 MS.gene055289:intron
TGTGGAGAAAGCTTCATTGG+AGG 0.603369 7.1:-39992764 MS.gene055289:CDS
AACAAACAAGAGAATCAAGT+AGG 0.610792 7.1:-39993318 MS.gene055289:CDS
GATAGTTGGTCTCACAGTCA+AGG 0.610866 7.1:-39992169 MS.gene055289:CDS
ACGTAGGCATCCTTCTTCAA+GGG 0.611020 7.1:-39990910 MS.gene055289:CDS
GCTGAAGCTTCTCCAAGAGA+GGG 0.612651 7.1:+39990348 None:intergenic
CAAGAATCTCTCCTCAACAA+AGG 0.620660 7.1:-39989391 MS.gene055289:CDS
AAGGACAAAATGTCATTGAG+AGG 0.626823 7.1:-39992870 MS.gene055289:CDS
TAACATGGATGCATTAGCTG+TGG 0.627343 7.1:-39990274 MS.gene055289:CDS
AGCTAAATACCATTCACGAA+AGG 0.627535 7.1:+39992580 None:intergenic
AGGAATTCCCTGATTTACGC+CGG 0.631176 7.1:+39990244 None:intergenic
GACAATCATCTTGAAGGGCA+AGG 0.632636 7.1:-39992889 MS.gene055289:CDS
GGCACGAACCATGGTACAGG+CGG 0.636398 7.1:-39992115 MS.gene055289:CDS
AGAAGCAGCATTATCAGGAA+CGG 0.641011 7.1:+39993383 None:intergenic
TTGGACAGCGCCGAATCAGG+AGG 0.641138 7.1:-39990218 MS.gene055289:CDS
GAAGTTCATCCTGAGTCCAA+GGG 0.645051 7.1:-39991957 MS.gene055289:CDS
ACTATCAGACGTGGACGATG+AGG 0.652965 7.1:+39992186 None:intergenic
AGGACAAAATGTCATTGAGA+GGG 0.654084 7.1:-39992869 MS.gene055289:CDS
TCAAGTAGGATCATTTAAGG+AGG 0.657594 7.1:-39993304 MS.gene055289:CDS
TGGATTATTAGAAAATCATG+TGG 0.668919 7.1:-39992782 MS.gene055289:CDS
GATGTGTCCCTAGTTTGCAA+GGG 0.670828 7.1:-39993242 MS.gene055289:CDS
ACATCTTTAATGTTACAACA+AGG 0.673582 7.1:-39990444 MS.gene055289:CDS
AACCAGTGGTTAGGAAACAA+GGG 0.674807 7.1:+39990762 None:intergenic
CTGAAGCTTCTCCAAGAGAG+GGG 0.677912 7.1:+39990349 None:intergenic
GTGAGACCAACTATCAGACG+TGG 0.685352 7.1:+39992177 None:intergenic
GTAAAGAATCAATACTCCTG+CGG 0.686611 7.1:+39992734 None:intergenic
GTAAAACTTTGATCCAGACC+GGG 0.689896 7.1:-39990868 MS.gene055289:CDS
CACAGATGAGAACAATAGTG+GGG 0.714993 7.1:-39992275 MS.gene055289:intron
TGCTGAAGGTGATCTCAACA+TGG 0.723578 7.1:-39990373 MS.gene055289:CDS
CTTGGAGACGAACTGCACGT+AGG 0.749412 7.1:-39990926 MS.gene055289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTTCTTTTCTTAAA+TGG + chr7.1:39990884-39990903 None:intergenic 15.0%
!!! TCTTTAATAGTTAAAGTATT+AGG - chr7.1:39993538-39993557 MS.gene055289:intron 15.0%
!!! TTTTATTTAATCTTTTGCTT+TGG - chr7.1:39992977-39992996 MS.gene055289:intron 15.0%
!! AAACAAAATAAAAAATCGAC+TGG + chr7.1:39990550-39990569 None:intergenic 20.0%
!! AAATAAAAAAGAGAGAAAGA+AGG + chr7.1:39991024-39991043 None:intergenic 20.0%
!! AATTCCAATATACATGTTTA+GGG - chr7.1:39989594-39989613 MS.gene055289:intron 20.0%
!! CATTTGATCATTTAATCTAA+AGG - chr7.1:39991200-39991219 MS.gene055289:intron 20.0%
!! CTTGTAATAATTTGAGAAAA+TGG - chr7.1:39989462-39989481 MS.gene055289:intron 20.0%
!! TAATTCCAATATACATGTTT+AGG - chr7.1:39989593-39989612 MS.gene055289:intron 20.0%
!! TCATATAAGTACTTATATGT+AGG + chr7.1:39991957-39991976 None:intergenic 20.0%
!! TTAGATTAAATGATCAAATG+TGG + chr7.1:39991200-39991219 None:intergenic 20.0%
!! TTTAGGTACAAACATATATT+TGG - chr7.1:39992455-39992474 MS.gene055289:intron 20.0%
!!! AAAAATAATTTTCTTACCCT+AGG + chr7.1:39989361-39989380 None:intergenic 20.0%
!!! TATTTTGTTATTATTTGCAG+AGG - chr7.1:39992122-39992141 MS.gene055289:CDS 20.0%
!!! TTTGAAATATATTTTGACGT+TGG + chr7.1:39992020-39992039 None:intergenic 20.0%
!!! TTTTTCTGGTATTAACATAA+AGG - chr7.1:39989755-39989774 MS.gene055289:intron 20.0%
! AAAATTGAAAATTGTGCTGA+AGG - chr7.1:39992711-39992730 MS.gene055289:CDS 25.0%
! AAGGAACATATAATGTATCT+CGG - chr7.1:39992673-39992692 MS.gene055289:CDS 25.0%
! AATTACTGCAAATGATAGTT+TGG + chr7.1:39991094-39991113 None:intergenic 25.0%
! ACATCTTTAATGTTACAACA+AGG - chr7.1:39992654-39992673 MS.gene055289:CDS 25.0%
! AGAAAATCTATAGATGCTTT+AGG - chr7.1:39992438-39992457 MS.gene055289:intron 25.0%
! AGATCTTATGAAAACAACTA+TGG - chr7.1:39991285-39991304 MS.gene055289:intron 25.0%
! ATATTGTAATACAAGTCAGT+AGG + chr7.1:39989397-39989416 None:intergenic 25.0%
! ATTAAGTAATTTCCTAGTAC+CGG + chr7.1:39990399-39990418 None:intergenic 25.0%
! ATTCCAATATACATGTTTAG+GGG - chr7.1:39989595-39989614 MS.gene055289:intron 25.0%
! GAAAATGAGCATATTAGTTA+TGG + chr7.1:39992618-39992637 None:intergenic 25.0%
! GCATTATAATGAATTCTCAT+TGG + chr7.1:39989949-39989968 None:intergenic 25.0%
! GTATATCAATAAAAAGCTCT+GGG + chr7.1:39991594-39991613 None:intergenic 25.0%
! TATTGTAATACAAGTCAGTA+GGG + chr7.1:39989396-39989415 None:intergenic 25.0%
! TCTGTGACAAAAATAATTAG+TGG + chr7.1:39990809-39990828 None:intergenic 25.0%
! TGGATTATTAGAAAATCATG+TGG - chr7.1:39990316-39990335 MS.gene055289:CDS 25.0%
! TTTCTAATAATCCATCAGAT+CGG + chr7.1:39990310-39990329 None:intergenic 25.0%
!! ATTTAATCTAAAGGCTTGTT+TGG - chr7.1:39991209-39991228 MS.gene055289:intron 25.0%
!! GAAGAGTTAGCTTAAAAAAT+TGG - chr7.1:39993202-39993221 MS.gene055289:intron 25.0%
!! GATACAAGCATTTGATATTT+TGG - chr7.1:39989653-39989672 MS.gene055289:intron 25.0%
!! TATGCTCATTTTCAATAAAC+AGG - chr7.1:39992625-39992644 MS.gene055289:CDS 25.0%
!! TTAAGTTGTTTATCCAAACT+AGG - chr7.1:39991480-39991499 MS.gene055289:CDS 25.0%
!!! TACAAAGTGTTGTCAAATAA+CGG - chr7.1:39990732-39990751 MS.gene055289:intron 25.0%
!!! TAGGAAACATTTTAAAGACT+AGG - chr7.1:39993557-39993576 MS.gene055289:intron 25.0%
!!! TCTAACATGCTTGTTATATA+AGG - chr7.1:39991509-39991528 MS.gene055289:CDS 25.0%
AACAAACAAGAGAATCAAGT+AGG - chr7.1:39989780-39989799 MS.gene055289:intron 30.0%
AACGAAAAAACAAGCCTAAA+AGG + chr7.1:39991058-39991077 None:intergenic 30.0%
AAGGGAAACATGAAAATCAA+AGG - chr7.1:39989874-39989893 MS.gene055289:intron 30.0%
ACCAGATACAATAAAGGTTA+AGG - chr7.1:39990487-39990506 MS.gene055289:intron 30.0%
AGACTTGAAACATCACAATT+CGG + chr7.1:39990600-39990619 None:intergenic 30.0%
AGAGTGCGAAAAATATACAA+TGG + chr7.1:39992080-39992099 None:intergenic 30.0%
AGGAACATATAATGTATCTC+GGG - chr7.1:39992674-39992693 MS.gene055289:CDS 30.0%
ATAACAAGCATGTTAGACTA+AGG + chr7.1:39991506-39991525 None:intergenic 30.0%
ATATATTACTTGTGTGTTGC+AGG - chr7.1:39993031-39993050 MS.gene055289:intron 30.0%
ATCAAAGGTAAATGTTGAAG+AGG - chr7.1:39989889-39989908 MS.gene055289:intron 30.0%
ATGCCTTCAATCAGAAATAT+CGG - chr7.1:39989529-39989548 MS.gene055289:intron 30.0%
CAAAAGAACCTTTATGAAAG+CGG + chr7.1:39993170-39993189 None:intergenic 30.0%
CAATTTAGACTGTCTGATTA+AGG - chr7.1:39993365-39993384 MS.gene055289:CDS 30.0%
GAATCAAGTAGGATCATTTA+AGG - chr7.1:39989791-39989810 MS.gene055289:intron 30.0%
GATGAAATTCGATTATGTCT+CGG + chr7.1:39992301-39992320 None:intergenic 30.0%
GGTATATCAATAAAAAGCTC+TGG + chr7.1:39991595-39991614 None:intergenic 30.0%
GTAAATGTTGAAGAGGTTAA+TGG - chr7.1:39989896-39989915 MS.gene055289:intron 30.0%
TACTTATATGTAGGCTATCT+TGG + chr7.1:39991948-39991967 None:intergenic 30.0%
TCCTTAACCTTTATTGTATC+TGG + chr7.1:39990491-39990510 None:intergenic 30.0%
TGACGAAAATCCATACATAA+TGG + chr7.1:39992385-39992404 None:intergenic 30.0%
TTAAAGACTAGGATGATATG+CGG - chr7.1:39993568-39993587 MS.gene055289:intron 30.0%
TTAACCTTTATTGTATCTGG+TGG + chr7.1:39990488-39990507 None:intergenic 30.0%
TTCAATGTTATCACATGTGT+CGG - chr7.1:39989491-39989510 MS.gene055289:intron 30.0%
TTCATGACAATCATCTTGAA+GGG - chr7.1:39990204-39990223 MS.gene055289:CDS 30.0%
TTCTAGGTAACCATTATGTA+TGG - chr7.1:39992372-39992391 MS.gene055289:intron 30.0%
TTTCATGACAATCATCTTGA+AGG - chr7.1:39990203-39990222 MS.gene055289:CDS 30.0%
! AATGGTTACCTAGAAAGTTT+TGG + chr7.1:39992367-39992386 None:intergenic 30.0%
! ACTTGTCATTTAAGTGCTTA+TGG + chr7.1:39991439-39991458 None:intergenic 30.0%
! AGTTGATTCTTCTTGTACAA+GGG - chr7.1:39990955-39990974 MS.gene055289:CDS 30.0%
! ATGATGACGAAAACTTTGTT+AGG - chr7.1:39990423-39990442 MS.gene055289:CDS 30.0%
! ATTATGTATGGATTTTCGTC+AGG - chr7.1:39992384-39992403 MS.gene055289:intron 30.0%
! ATTCTTTGAGTTCAATTCAG+TGG + chr7.1:39990450-39990469 None:intergenic 30.0%
! CATGATTCCTCTTTCTATTT+TGG + chr7.1:39993427-39993446 None:intergenic 30.0%
! CTTCTTTTCTCAATGTTGAA+TGG - chr7.1:39990057-39990076 MS.gene055289:intron 30.0%
! GCATCTATAGATTTTCTCTA+AGG + chr7.1:39992435-39992454 None:intergenic 30.0%
! GTATAAACTATTCTGAAGAG+TGG + chr7.1:39991351-39991370 None:intergenic 30.0%
! TTTGCAATCTGTTTCCTTTT+AGG - chr7.1:39991041-39991060 MS.gene055289:intron 30.0%
!! AGGTTGGATTACAGTTTTAA+TGG - chr7.1:39989307-39989326 MS.gene055289:CDS 30.0%
!! AGTATTGATTCTTTACCGAA+TGG - chr7.1:39990371-39990390 MS.gene055289:CDS 30.0%
!! TTATCAATGAAAGTACCAAC+TGG + chr7.1:39993228-39993247 None:intergenic 30.0%
!!! TTAGGCTTGTTTTTTCGTTT+TGG - chr7.1:39991059-39991078 MS.gene055289:intron 30.0%
AAACATGTGTGAGACTGTTT+CGG - chr7.1:39991262-39991281 MS.gene055289:intron 35.0%
AAATCAGGGAATTCCTACTT+TGG - chr7.1:39992861-39992880 MS.gene055289:CDS 35.0%
AAATGTGGTCAATCATTTCG+CGG + chr7.1:39991185-39991204 None:intergenic 35.0%
AAGCTAACTCTTCCACTATT+TGG + chr7.1:39993195-39993214 None:intergenic 35.0%
AAGGACAAAATGTCATTGAG+AGG - chr7.1:39990228-39990247 MS.gene055289:CDS 35.0%
AATATACATGTTTAGGGGAG+GGG - chr7.1:39989600-39989619 MS.gene055289:intron 35.0%
AATCAAGTGAAAACGCCTTA+TGG + chr7.1:39991913-39991932 None:intergenic 35.0%
ACACTGTTTGGAAAAGCTTA+TGG - chr7.1:39991869-39991888 MS.gene055289:intron 35.0%
ACTAGGAATGTGCAAAATGA+AGG + chr7.1:39992526-39992545 None:intergenic 35.0%
AGATACTTTCTCTATGACTG+TGG + chr7.1:39993517-39993536 None:intergenic 35.0%
AGCTAAATACCATTCACGAA+AGG + chr7.1:39990521-39990540 None:intergenic 35.0%
AGCTAATGCATCCATGTTAA+TGG + chr7.1:39992823-39992842 None:intergenic 35.0%
AGCTTAAAAAATTGGCCAGT+TGG - chr7.1:39993210-39993229 MS.gene055289:intron 35.0%
AGGACAAAATGTCATTGAGA+GGG - chr7.1:39990229-39990248 MS.gene055289:CDS 35.0%
AGTAAAACTTTGATCCAGAC+CGG - chr7.1:39992229-39992248 MS.gene055289:CDS 35.0%
ATACCTGAAACTGCAACTAT+TGG - chr7.1:39991610-39991629 MS.gene055289:intron 35.0%
ATAGGGTCCAAAATAGAAAG+AGG - chr7.1:39993417-39993436 MS.gene055289:CDS 35.0%
ATGACAAACGTCATAGGTTA+GGG - chr7.1:39992263-39992282 MS.gene055289:CDS 35.0%
CAATATACATGTTTAGGGGA+GGG - chr7.1:39989599-39989618 MS.gene055289:intron 35.0%
CAGAAATATCGGTACTACAT+CGG - chr7.1:39989540-39989559 MS.gene055289:intron 35.0%
GAGAGATCATACTTATCAAC+TGG + chr7.1:39993618-39993637 None:intergenic 35.0%
GATACTTTCTCTATGACTGT+GGG + chr7.1:39993516-39993535 None:intergenic 35.0%
GGAACTATCAGTAATCATAG+AGG + chr7.1:39990788-39990807 None:intergenic 35.0%
GTAAAGAATCAATACTCCTG+CGG + chr7.1:39990367-39990386 None:intergenic 35.0%
TAACGGCTATATCATTGTAG+CGG - chr7.1:39990749-39990768 MS.gene055289:CDS 35.0%
TAAGTACTTGTGACACTGTT+TGG - chr7.1:39991857-39991876 MS.gene055289:intron 35.0%
TAATCTTCTTCCCTTGAAGA+AGG + chr7.1:39992201-39992220 None:intergenic 35.0%
TAGCTTACGATATGTCCATA+AGG - chr7.1:39991895-39991914 MS.gene055289:intron 35.0%
TAGTACAATACTGAAGCATG+TGG - chr7.1:39991750-39991769 MS.gene055289:intron 35.0%
TCAAGTAGGATCATTTAAGG+AGG - chr7.1:39989794-39989813 MS.gene055289:intron 35.0%
TCACAGATGAGAACAATAGT+GGG - chr7.1:39990822-39990841 MS.gene055289:CDS 35.0%
TCACTGCAAAGTACAGATTA+AGG + chr7.1:39991546-39991565 None:intergenic 35.0%
TCATGCTCTTACTAAATCCA+TGG - chr7.1:39991723-39991742 MS.gene055289:intron 35.0%
TCTTCTTGTACAAGGGTTAA+TGG - chr7.1:39990962-39990981 MS.gene055289:intron 35.0%
TTAATACCAGAAAAAGCGAG+AGG + chr7.1:39989750-39989769 None:intergenic 35.0%
TTAGACTGTCTGATTAAGGT+TGG - chr7.1:39993369-39993388 MS.gene055289:CDS 35.0%
TTATTTGCAGAGGACAGTAA+TGG - chr7.1:39992132-39992151 MS.gene055289:CDS 35.0%
TTTGTCATCTTGAGATATCC+CGG + chr7.1:39992251-39992270 None:intergenic 35.0%
! CAGTTGATTCTTCTTGTACA+AGG - chr7.1:39990954-39990973 MS.gene055289:CDS 35.0%
! GCAGAATGATGAATTTTCGT+TGG - chr7.1:39989996-39990015 MS.gene055289:intron 35.0%
! GTACCGATATTTCTGATTGA+AGG + chr7.1:39989535-39989554 None:intergenic 35.0%
! TGTGATTTTCGAAATTCTGC+AGG - chr7.1:39993657-39993676 MS.gene055289:intron 35.0%
! TGTTATATAAGGCTCTGACA+TGG - chr7.1:39991520-39991539 MS.gene055289:CDS 35.0%
!! AAAAAGCTCTGGGACTTTAA+AGG + chr7.1:39991584-39991603 None:intergenic 35.0%
!! TCGAACTTATGTCGATTTGA+AGG - chr7.1:39993095-39993114 MS.gene055289:intron 35.0%
!! TCTACTTCTAGAACCGAAAA+TGG + chr7.1:39992906-39992925 None:intergenic 35.0%
!!! TGATATTTTGGCTAGTGTAG+CGG - chr7.1:39989665-39989684 MS.gene055289:intron 35.0%
AACCAGTGGTTAGGAAACAA+GGG + chr7.1:39992339-39992358 None:intergenic 40.0%
AACTCTGAGTCTTCTGCAAA+AGG + chr7.1:39989695-39989714 None:intergenic 40.0%
AAGGAGGAGCAATTTGAGAA+TGG - chr7.1:39989810-39989829 MS.gene055289:intron 40.0%
AATGCATCCATGTTAATGGC+AGG + chr7.1:39992819-39992838 None:intergenic 40.0%
ACAATATGAATCACCGAGAC+AGG - chr7.1:39989410-39989429 MS.gene055289:CDS 40.0%
ACCTTTATTGTATCTGGTGG+TGG + chr7.1:39990485-39990504 None:intergenic 40.0%
ACTGTCTGATTAAGGTTGGA+TGG - chr7.1:39993373-39993392 MS.gene055289:CDS 40.0%
AGAACCTTTATGAAAGCGGT+CGG + chr7.1:39993166-39993185 None:intergenic 40.0%
AGAAGCAGCATTATCAGGAA+CGG + chr7.1:39989718-39989737 None:intergenic 40.0%
AGTATGATCTCTCTGCATTG+TGG - chr7.1:39993625-39993644 MS.gene055289:intron 40.0%
CAAGAATCTCTCCTCAACAA+AGG - chr7.1:39993707-39993726 MS.gene055289:intron 40.0%
CACAGATGAGAACAATAGTG+GGG - chr7.1:39990823-39990842 MS.gene055289:CDS 40.0%
CACTGGCATGAATCACAATT+CGG + chr7.1:39990643-39990662 None:intergenic 40.0%
CATAAGTTCGATGCTTTGCA+TGG + chr7.1:39993086-39993105 None:intergenic 40.0%
CATGTTTCCCTTGCAAACTA+GGG + chr7.1:39989866-39989885 None:intergenic 40.0%
CCAATATACATGTTTAGGGG+AGG - chr7.1:39989598-39989617 MS.gene055289:intron 40.0%
CCTCCCCTAAACATGTATAT+TGG + chr7.1:39989601-39989620 None:intergenic 40.0%
CCTTGAACCTAGCATCTTTA+GGG - chr7.1:39991796-39991815 MS.gene055289:intron 40.0%
CCTTTATTGTATCTGGTGGT+GGG + chr7.1:39990484-39990503 None:intergenic 40.0%
CTCAAGATGACAAACGTCAT+AGG - chr7.1:39992257-39992276 MS.gene055289:CDS 40.0%
GAACCAATAGTTGCAGTTTC+AGG + chr7.1:39991616-39991635 None:intergenic 40.0%
GATGACAAACGTCATAGGTT+AGG - chr7.1:39992262-39992281 MS.gene055289:CDS 40.0%
GATTCTTTACCGAATGGTTC+CGG - chr7.1:39990377-39990396 MS.gene055289:CDS 40.0%
GTAAAACTTTGATCCAGACC+GGG - chr7.1:39992230-39992249 MS.gene055289:CDS 40.0%
GTCACAGATGAGAACAATAG+TGG - chr7.1:39990821-39990840 MS.gene055289:CDS 40.0%
GTCTCCAAGTATAGTTGTCA+CGG + chr7.1:39992161-39992180 None:intergenic 40.0%
GTTCACGACCAAAACTTTCT+AGG - chr7.1:39992356-39992375 MS.gene055289:intron 40.0%
TAACATGGATGCATTAGCTG+TGG - chr7.1:39992824-39992843 MS.gene055289:CDS 40.0%
TACAAGTCAGTAGGGAATGT+AGG + chr7.1:39989388-39989407 None:intergenic 40.0%
TAGAGCTTCAAGATCTCCTA+GGG - chr7.1:39989342-39989361 MS.gene055289:CDS 40.0%
TATTACTTGTGTGTTGCAGG+TGG - chr7.1:39993034-39993053 MS.gene055289:intron 40.0%
TCAAATAAGCCGATCCAAAC+AGG + chr7.1:39991822-39991841 None:intergenic 40.0%
TCACAAGTACTTACACTAGC+AGG + chr7.1:39991850-39991869 None:intergenic 40.0%
TCATAGGTTAGGGTTCATGT+TGG - chr7.1:39992273-39992292 MS.gene055289:CDS 40.0%
TCATGTGGAGAAAGCTTCAT+TGG - chr7.1:39990331-39990350 MS.gene055289:CDS 40.0%
TCATGTTTCCCTTGCAAACT+AGG + chr7.1:39989867-39989886 None:intergenic 40.0%
TCCAACATTGTGTCAGTATC+AGG - chr7.1:39992580-39992599 MS.gene055289:intron 40.0%
TCGAAAAACTAGGAACTGGA+AGG - chr7.1:39992943-39992962 MS.gene055289:intron 40.0%
TCGAAATTCTGCAGGATAAG+TGG - chr7.1:39993665-39993684 MS.gene055289:intron 40.0%
TCTTATCTGCTCATGCCTAT+TGG - chr7.1:39993767-39993786 MS.gene055289:CDS 40.0%
TGCTCTTACTAAATCCATGG+AGG - chr7.1:39991726-39991745 MS.gene055289:intron 40.0%
TGCTTGTATCTGATTGCTGT+CGG + chr7.1:39989643-39989662 None:intergenic 40.0%
TGTTAGACTAAGGCCTAGTT+TGG + chr7.1:39991496-39991515 None:intergenic 40.0%
! AGAAGTAGAAGCTTTGGTTC+AGG - chr7.1:39992917-39992936 MS.gene055289:CDS 40.0%
! AGGCTATCTTGGCGATTTTA+TGG + chr7.1:39991937-39991956 None:intergenic 40.0%
! CTAGCAATCTTGAAAGCACA+AGG + chr7.1:39993259-39993278 None:intergenic 40.0%
! GCATTGTTGTTGAGACCAAT+AGG + chr7.1:39993785-39993804 None:intergenic 40.0%
! GGTTCTTTTGTGCCAAATAG+TGG - chr7.1:39993180-39993199 MS.gene055289:intron 40.0%
! TAGCTGCTATTTGACTACAC+TGG + chr7.1:39990660-39990679 None:intergenic 40.0%
!! GGTTCTAGAAGTAGAAGCTT+TGG - chr7.1:39992911-39992930 MS.gene055289:CDS 40.0%
!!! AAAGATCCTCTCGCTTTTTC+TGG - chr7.1:39989741-39989760 MS.gene055289:intron 40.0%
!!! ATTTTCTCTAAGGCGTCGTT+TGG + chr7.1:39992425-39992444 None:intergenic 40.0%
!!! GATATTTTGGCTAGTGTAGC+GGG - chr7.1:39989666-39989685 MS.gene055289:intron 40.0%
AAACAGGCCCTAAAGATGCT+AGG + chr7.1:39991806-39991825 None:intergenic 45.0%
AAGATGCTAGGTTCAAGGCT+CGG + chr7.1:39991794-39991813 None:intergenic 45.0%
AATCAATACTCCTGCGGAAG+TGG + chr7.1:39990361-39990380 None:intergenic 45.0%
ACGTAGGCATCCTTCTTCAA+GGG - chr7.1:39992188-39992207 MS.gene055289:CDS 45.0%
ACTTGCAGTGAAGTTGTCTC+TGG - chr7.1:39989834-39989853 MS.gene055289:intron 45.0%
AGAAGTTCATCCTGAGTCCA+AGG - chr7.1:39991140-39991159 MS.gene055289:intron 45.0%
AGGAATTCCCTGATTTACGC+CGG + chr7.1:39992857-39992876 None:intergenic 45.0%
ATCTCTCCTCAACAAAGGAG+AGG - chr7.1:39993712-39993731 MS.gene055289:intron 45.0%
CACAGTTCCTGCCATTAACA+TGG - chr7.1:39992809-39992828 MS.gene055289:CDS 45.0%
CATTAGCTGTGGTTCCATAC+CGG - chr7.1:39992835-39992854 MS.gene055289:CDS 45.0%
CCCACCACCAGATACAATAA+AGG - chr7.1:39990481-39990500 MS.gene055289:intron 45.0%
CCCTAAAGATGCTAGGTTCA+AGG + chr7.1:39991799-39991818 None:intergenic 45.0%
CGCACTCTCACAATGTCTAT+TGG - chr7.1:39992092-39992111 MS.gene055289:intron 45.0%
CGCATCAAAAACCGATCTGA+TGG - chr7.1:39990296-39990315 MS.gene055289:CDS 45.0%
CTAGAGCTTCAAGATCTCCT+AGG - chr7.1:39989341-39989360 MS.gene055289:CDS 45.0%
CTAGGAGATCTTGAAGCTCT+AGG + chr7.1:39989343-39989362 None:intergenic 45.0%
GAACCAGTGGTTAGGAAACA+AGG + chr7.1:39992340-39992359 None:intergenic 45.0%
GAAGCCGTGACAACTATACT+TGG - chr7.1:39992154-39992173 MS.gene055289:CDS 45.0%
GAAGTTCATCCTGAGTCCAA+GGG - chr7.1:39991141-39991160 MS.gene055289:intron 45.0%
GACAATCATCTTGAAGGGCA+AGG - chr7.1:39990209-39990228 MS.gene055289:CDS 45.0%
GATGCAAGTCCTTTCGTGAA+TGG - chr7.1:39990509-39990528 MS.gene055289:intron 45.0%
GCAGGATAAGTGGAAGACAT+TGG - chr7.1:39993675-39993694 MS.gene055289:intron 45.0%
GCAGTCGAAAAACTAGGAAC+TGG - chr7.1:39992939-39992958 MS.gene055289:intron 45.0%
GCCTGATACTGACACAATGT+TGG + chr7.1:39992584-39992603 None:intergenic 45.0%
GCCTTGAACCTAGCATCTTT+AGG - chr7.1:39991795-39991814 MS.gene055289:intron 45.0%
GCTTGTATCTGATTGCTGTC+GGG + chr7.1:39989642-39989661 None:intergenic 45.0%
GTGGAGAAAGCTTCATTGGA+GGG - chr7.1:39990335-39990354 MS.gene055289:CDS 45.0%
GTTCAGGCAGTCGAAAAACT+AGG - chr7.1:39992933-39992952 MS.gene055289:intron 45.0%
TATGAAAGCGGTCGGAAGAA+AGG + chr7.1:39993158-39993177 None:intergenic 45.0%
TCTGAAGAGTGGAGAGCTTA+TGG + chr7.1:39991340-39991359 None:intergenic 45.0%
TCTTCCGACCGCTTTCATAA+AGG - chr7.1:39993159-39993178 MS.gene055289:intron 45.0%
TGCTGAAGGTGATCTCAACA+TGG - chr7.1:39992725-39992744 MS.gene055289:CDS 45.0%
TGTATCTCGGGAACGTTCTA+CGG - chr7.1:39992686-39992705 MS.gene055289:CDS 45.0%
TGTGGAGAAAGCTTCATTGG+AGG - chr7.1:39990334-39990353 MS.gene055289:CDS 45.0%
TTCCATACCGGCGTAAATCA+GGG - chr7.1:39992847-39992866 MS.gene055289:CDS 45.0%
TTCGCAGAAGCAGCATTATC+AGG + chr7.1:39989723-39989742 None:intergenic 45.0%
TTTCCTACCGTTACAACCCT+TGG + chr7.1:39991160-39991179 None:intergenic 45.0%
! ACATCGCAGCTCTGGTAAAT+AGG - chr7.1:39993399-39993418 MS.gene055289:CDS 45.0%
! CAGTATTGTACTAGCCTCCA+TGG + chr7.1:39991743-39991762 None:intergenic 45.0%
! CATCGCAGCTCTGGTAAATA+GGG - chr7.1:39993400-39993419 MS.gene055289:CDS 45.0%
! GATAGTTGGTCTCACAGTCA+AGG - chr7.1:39990929-39990948 MS.gene055289:CDS 45.0%
! GATGTGTCCCTAGTTTGCAA+GGG - chr7.1:39989856-39989875 MS.gene055289:intron 45.0%
! TAGTCTCTCTCACATCGACT+AGG + chr7.1:39992543-39992562 None:intergenic 45.0%
! TTCCTAGTACCGGAACCATT+CGG + chr7.1:39990389-39990408 None:intergenic 45.0%
!! AAGTTTTGGTCGTGAACCAG+TGG + chr7.1:39992353-39992372 None:intergenic 45.0%
!! TAGCATCTTTAGGGCCTGTT+TGG - chr7.1:39991805-39991824 MS.gene055289:intron 45.0%
!! TCTTTAGGGCCTGTTTGGAT+CGG - chr7.1:39991810-39991829 MS.gene055289:intron 45.0%
!! TGCAACTATTGGTTCGCTGA+AGG - chr7.1:39991621-39991640 MS.gene055289:intron 45.0%
AATGGCACGAACCATGGTAC+AGG - chr7.1:39990980-39990999 MS.gene055289:intron 50.0%
ACTATCAGACGTGGACGATG+AGG + chr7.1:39990915-39990934 None:intergenic 50.0%
ACTCTGTCGAGAAGCTCTTG+AGG + chr7.1:39993748-39993767 None:intergenic 50.0%
AGCTGAAGCTTCTCCAAGAG+AGG + chr7.1:39992754-39992773 None:intergenic 50.0%
AGGGTTAATGGCACGAACCA+TGG - chr7.1:39990974-39990993 MS.gene055289:intron 50.0%
AGTCCAAGGGTTGTAACGGT+AGG - chr7.1:39991154-39991173 MS.gene055289:intron 50.0%
CACGTAGGCATCCTTCTTCA+AGG - chr7.1:39992187-39992206 MS.gene055289:CDS 50.0%
CATCGTCCACGTCTGATAGT+TGG - chr7.1:39990915-39990934 MS.gene055289:CDS 50.0%
CATCTTGAGATATCCCGGTC+TGG + chr7.1:39992246-39992265 None:intergenic 50.0%
CCGAAAATGGCCTCCTGATT+CGG + chr7.1:39992893-39992912 None:intergenic 50.0%
CCTGAGTCCAAGGGTTGTAA+CGG - chr7.1:39991150-39991169 MS.gene055289:intron 50.0%
CTGAAGCTTCTCCAAGAGAG+GGG + chr7.1:39992752-39992771 None:intergenic 50.0%
GCTGAAGCTTCTCCAAGAGA+GGG + chr7.1:39992753-39992772 None:intergenic 50.0%
GGTTCTCCTCTCCTTTGTTG+AGG + chr7.1:39993721-39993740 None:intergenic 50.0%
GTGAGACCAACTATCAGACG+TGG + chr7.1:39990924-39990943 None:intergenic 50.0%
GTTCCATACCGGCGTAAATC+AGG - chr7.1:39992846-39992865 MS.gene055289:CDS 50.0%
TACCGAATGGTTCCGGTACT+AGG - chr7.1:39990384-39990403 MS.gene055289:CDS 50.0%
TCGAGAAGCTCTTGAGGAAC+AGG + chr7.1:39993742-39993761 None:intergenic 50.0%
TTCCCTGATTTACGCCGGTA+TGG + chr7.1:39992852-39992871 None:intergenic 50.0%
TTGGTCGTGAACCAGTGGTT+AGG + chr7.1:39992348-39992367 None:intergenic 50.0%
TTGTGCAGTTGTGCCTGTCT+CGG + chr7.1:39989426-39989445 None:intergenic 50.0%
! GAAACGTTTTCCAGAGTCGC+AGG - chr7.1:39990170-39990189 MS.gene055289:CDS 50.0%
! GACCCTTGTTTCCTAACCAC+TGG - chr7.1:39992334-39992353 MS.gene055289:intron 50.0%
! GGATGTGTCCCTAGTTTGCA+AGG - chr7.1:39989855-39989874 MS.gene055289:intron 50.0%
! TTTAGGGGAGGGGTACAATC+AGG - chr7.1:39989610-39989629 MS.gene055289:intron 50.0%
!! ATTGTATCTGGTGGTGGGTC+AGG + chr7.1:39990479-39990498 None:intergenic 50.0%
!! CCGAATCAGGAGGCCATTTT+CGG - chr7.1:39992890-39992909 MS.gene055289:CDS 50.0%
CAGGAACTGTGACCAGAGCT+CGG + chr7.1:39992800-39992819 None:intergenic 55.0%
CCGTTACAACCCTTGGACTC+AGG + chr7.1:39991153-39991172 None:intergenic 55.0%
CGATGAATCACCTGCGACTC+TGG + chr7.1:39990183-39990202 None:intergenic 55.0%
CTCAACATGGTCCCCTCTCT+TGG - chr7.1:39992738-39992757 MS.gene055289:CDS 55.0%
CTTGGAGACGAACTGCACGT+AGG - chr7.1:39992172-39992191 MS.gene055289:CDS 55.0%
GATTCGGCGCTGTCCAAAGT+AGG + chr7.1:39992877-39992896 None:intergenic 55.0%
GCACTCACGCAACTGCTGAT+TGG + chr7.1:39993475-39993494 None:intergenic 55.0%
! ACTTTGGACAGCGCCGAATC+AGG - chr7.1:39992877-39992896 MS.gene055289:CDS 55.0%
GATGGCTCACATCGCAGCTC+TGG - chr7.1:39993391-39993410 MS.gene055289:CDS 60.0%
GCATCGTTCCGCCTGTACCA+TGG + chr7.1:39990994-39991013 None:intergenic 60.0%
GGCACGAACCATGGTACAGG+CGG - chr7.1:39990983-39991002 MS.gene055289:intron 60.0%
GGTACAGGCGGAACGATGCA+TGG - chr7.1:39990995-39991014 MS.gene055289:intron 60.0%
! TTGGACAGCGCCGAATCAGG+AGG - chr7.1:39992880-39992899 MS.gene055289:CDS 60.0%
!! CGTGTCAAAGTGCCGAGCTC+TGG - chr7.1:39992785-39992804 MS.gene055289:CDS 60.0%
CATTGGAGGGCCACTTCCGC+AGG - chr7.1:39990348-39990367 MS.gene055289:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 39989292 39993828 39989292 ID=MS.gene055289
chr7.1 mRNA 39989292 39993828 39989292 ID=MS.gene055289.t1;Parent=MS.gene055289
chr7.1 exon 39993757 39993828 39993757 ID=MS.gene055289.t1.exon1;Parent=MS.gene055289.t1
chr7.1 CDS 39993757 39993828 39993757 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39993225 39993505 39993225 ID=MS.gene055289.t1.exon2;Parent=MS.gene055289.t1
chr7.1 CDS 39993225 39993505 39993225 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39992590 39992936 39992590 ID=MS.gene055289.t1.exon3;Parent=MS.gene055289.t1
chr7.1 CDS 39992590 39992936 39992590 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39992104 39992292 39992104 ID=MS.gene055289.t1.exon4;Parent=MS.gene055289.t1
chr7.1 CDS 39992104 39992292 39992104 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39991949 39992011 39991949 ID=MS.gene055289.t1.exon5;Parent=MS.gene055289.t1
chr7.1 CDS 39991949 39992011 39991949 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39991478 39991557 39991478 ID=MS.gene055289.t1.exon6;Parent=MS.gene055289.t1
chr7.1 CDS 39991478 39991557 39991478 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39990743 39990978 39990743 ID=MS.gene055289.t1.exon7;Parent=MS.gene055289.t1
chr7.1 CDS 39990743 39990978 39990743 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39990156 39990473 39990156 ID=MS.gene055289.t1.exon8;Parent=MS.gene055289.t1
chr7.1 CDS 39990156 39990473 39990156 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39990004 39990067 39990004 ID=MS.gene055289.t1.exon9;Parent=MS.gene055289.t1
chr7.1 CDS 39990004 39990067 39990004 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
chr7.1 exon 39989292 39989441 39989292 ID=MS.gene055289.t1.exon10;Parent=MS.gene055289.t1
chr7.1 CDS 39989292 39989441 39989292 ID=cds.MS.gene055289.t1;Parent=MS.gene055289.t1
Gene Sequence

>MS.gene055289

ATGATTATGCAGAAGAGGTTGGATTACAGTTTTAATGGCTATCAAGTTCCTAGAGCTTCAAGATCTCCTAGGGTAAGAAAATTATTTTTGTCTCCTACATTCCCTACTGACTTGTATTACAATATGAATCACCGAGACAGGCACAACTGCACAATACTAACAGATCGACACTTGTAATAATTTGAGAAAATGGAAGTAATTCAATGTTATCACATGTGTCGGTATCTGACATCAGACATGCCTTCAATCAGAAATATCGGTACTACATCGGTAGTATGAATCACGTTTTGATATATTCTTATAATTCCAATATACATGTTTAGGGGAGGGGTACAATCAGGAAGAAACCCGACAGCAATCAGATACAAGCATTTGATATTTTGGCTAGTGTAGCGGGCAACCTTTTGCAGAAGACTCAGAGTTCCGTTCCTGATAATGCTGCTTCTGCGAAAGATCCTCTCGCTTTTTCTGGTATTAACATAAAGGATAACAAACAAGAGAATCAAGTAGGATCATTTAAGGAGGAGCAATTTGAGAATGGAACTTGCAGTGAAGTTGTCTCTGGATGTGTCCCTAGTTTGCAAGGGAAACATGAAAATCAAAGGTAAATGTTGAAGAGGTTAATGGAGATGCAATGTAGTTTTACACTGTCATCCAATGAGAATTCATTATAATGCGACGTAAGTCTATTTTGTAACTGCACTGCAGAATGATGAATTTTCGTTGGACGTCAGTGTAATATTAGTTTACACTAAAAATGCATGTCTTCTTTTCTCAATGTTGAATGGCTATTTTTTTGTACGACAACGAAGAAAATTAATTCAATGTTACTTTTATGTGTTTGAAACTTGTCATCACTTAACAATGTTGTGTTGTATGAAACGTTTTCCAGAGTCGCAGGTGATTCATCGTTTCATGACAATCATCTTGAAGGGCAAGGACAAAATGTCATTGAGAGGGAAGATGAACGTGTGAAATTGAGAAGTACAAATGAGAAGACTATTCGCATCAAAAACCGATCTGATGGATTATTAGAAAATCATGTGGAGAAAGCTTCATTGGAGGGCCACTTCCGCAGGAGTATTGATTCTTTACCGAATGGTTCCGGTACTAGGAAATTACTTAATAGAGATGATGACGAAAACTTTGTTAGGTCCACTGAATTGAACTCAAAGAATAAGATACCTGACCCACCACCAGATACAATAAAGGTTAAGGATGCAAGTCCTTTCGTGAATGGTATTTAGCTTTACTTCCAGTCGATTTTTTATTTTGTTTCAAGTCTCACAATTTGTTTGTTGTGTTCCGAATTGTGATGTTTCAAGTCTCACAATTTGTTTGTTGTGTTCCGAATTGTGATTCATGCCAGTGTAGTCAAATAGCAGCTATAGCGTCGCAAAAATTGAACAAATTGTTATTGTTCTGTCAAATGTTATTTAGTACAAAGTGTTGTCAAATAACGGCTATATCATTGTAGCGGAATTTGAACAAAACCTCTATGATTACTGATAGTTCCACTAATTATTTTTGTCACAGATGAGAACAATAGTGGGGACAATTCTGTGCTTGTAAATTCAGAAATGATGTATCCATTTAAGAAAAGAAAGTTTTTCTATCAAACCTCATCGTCCACGTCTGATAGTTGGTCTCACAGTCAAGGCACAGTTGATTCTTCTTGTACAAGGGTTAATGGCACGAACCATGGTACAGGCGGAACGATGCATGGTTGCCTTCTTTCTCTCTTTTTTATTTGCAATCTGTTTCCTTTTAGGCTTGTTTTTTCGTTTTGGCTCAACGATCCAAACTATCATTTGCAGTAATTGAAGAATCATCTTCTATAGCTGATGAAGAAGTTCATCCTGAGTCCAAGGGTTGTAACGGTAGGAAAGTCCGCGAAATGATTGACCACATTTGATCATTTAATCTAAAGGCTTGTTTGGATTGACTTTCTAGAACTTATTTACTGACATAAACATGTGTGAGACTGTTTCGGAGATCTTATGAAAACAACTATGGCATGTTTATAAACTGTTTTTAACTTATTTCCATAAGCTCTCCACTCTTCAGAATAGTTTATACAACAATTTATAGCTTATTAAAAAGAATTTGACTTTATTTTATCTTTTGTTATAGAAATAGCTTATCCATAAGCACTTAAATGACAAGTTTTTATGTTATAAGCGCTTAATTAAGTTGTTTATCCAAACTAGGCCTTAGTCTAACATGCTTGTTATATAAGGCTCTGACATGGCCTTAATCTGTACTTTGCAGTGAAGCTTAGCATAAAATCCTTTAAAGTCCCAGAGCTTTTTATTGATATACCTGAAACTGCAACTATTGGTTCGCTGAAGGTATGTAATTAAACTTCGTCTGAAAGAGACAGTGATAACATGATTTATGCACAATTTCATGAGTAATGTAGTTGAACAGATCATGCTCTTACTAAATCCATGGAGGCTAGTACAATACTGAAGCATGTGGACAATTTTATGACATAATCCGAGCCTTGAACCTAGCATCTTTAGGGCCTGTTTGGATCGGCTTATTTGAGTATACCTGCTAGTGTAAGTACTTGTGACACTGTTTGGAAAAGCTTATGGAAATAGCTTACGATATGTCCATAAGGCGTTTTCACTTGATTTCCATAAAATCGCCAAGATAGCCTACATATAAGTACTTATATGATAAAACGTCTATGTTATAAGCATTTAATTAAGTTGTTTATCCAACGTCAAAATATATTTCAAATGTATAAAGCATAAGTATAGTAACTACAATAAGCAATCCATTGTATATTTTTCGCACTCTCACAATGTCTATTGGCTAAATTTATTTTGTTATTATTTGCAGAGGACAGTAATGGAAGCCGTGACAACTATACTTGGAGACGAACTGCACGTAGGCATCCTTCTTCAAGGGAAGAAGATTAGAGATGACAGTAAAACTTTGATCCAGACCGGGATATCTCAAGATGACAAACGTCATAGGTTAGGGTTCATGTTGGAGCCGAGACATAATCGAATTTCATCTTCATACAATGAAGACCCTTGTTTCCTAACCACTGGTTCACGACCAAAACTTTCTAGGTAACCATTATGTATGGATTTTCGTCAGGAACGTTTATTTGAGTCCAAACGACGCCTTAGAGAAAATCTATAGATGCTTTAGGTACAAACATATATTTGGAGTTTCTTAACTATAAAGCATTTTATTTTTATCTTACATATATATCCTTCATTTTGCACATTCCTAGTCGATGTGAGAGAGACTAATAACTCAGACTTGAATTCCAACATTGTGTCAGTATCAGGCAATTCTAACAGCCATAACTAATATGCTCATTTTCAATAAACAGGCAATCAACATCTTTAATGTTACAACAAGGAACATATAATGTATCTCGGGAACGTTCTACGGTCAAAATTGAAAATTGTGCTGAAGGTGATCTCAACATGGTCCCCTCTCTTGGAGAAGCTTCAGCTAACAACAATAACGTGTCAAAGTGCCGAGCTCTGGTCACAGTTCCTGCCATTAACATGGATGCATTAGCTGTGGTTCCATACCGGCGTAAATCAGGGAATTCCTACTTTGGACAGCGCCGAATCAGGAGGCCATTTTCGGTTCTAGAAGTAGAAGCTTTGGTTCAGGCAGTCGAAAAACTAGGAACTGGAAGGTTTATTTAGTATTTTATTTAATCTTTTGCTTTGGTTAATCAGTAGTTCAGAAACTGTATAGTGTTATATATTACTTGTGTGTTGCAGGTGGCGTGATGTCAAACAGCGTGCTTTTGACCATGCAAAGCATCGAACTTATGTCGATTTGAAGGTGAGTGATGTGAAATCTCACTAATCGTTAATCTTTTGCCTTTCTTCCGACCGCTTTCATAAAGGTTCTTTTGTGCCAAATAGTGGAAGAGTTAGCTTAAAAAATTGGCCAGTTGGTACTTTCATTGATAAATTATCTTCCTTGTGCTTTCAAGATTGCTAGTTATTTGTTGCAAATTTTTATTTTGCTTCTGTATTAGAAAATTTCTTGAAGTGCTAGAATGCGAATTCATATGCGTGCACAGTCATCAATTTAGACTGTCTGATTAAGGTTGGATGGCTCACATCGCAGCTCTGGTAAATAGGGTCCAAAATAGAAAGAGGAATCATGAGCTGTTCGATCTTGATCTAATGATCCAATCAGCAGTTGCGTGAGTGCAGAAAGTTCAAATATGTTCCCACAGTCATAGAGAAAGTATCTTTCTTTAATAGTTAAAGTATTAGGAAACATTTTAAAGACTAGGATGATATGCGGCACGCACTCATGCAGACATGCGTGCCAGTTGATAAGTATGATCTCTCTGCATTGTGGTAACTGTTATGTGATTTTCGAAATTCTGCAGGATAAGTGGAAGACATTGGTTCACACAGCAAGAATCTCTCCTCAACAAAGGAGAGGAGAACCTGTTCCTCAAGAGCTTCTCGACAGAGTCTTATCTGCTCATGCCTATTGGTCTCAACAACAATGCAAGCATCAATTTAAATCAATGTGA

Protein sequence

>MS.gene055289.t1

MIMQKRLDYSFNGYQVPRASRSPRGRGTIRKKPDSNQIQAFDILASVAGNLLQKTQSSVPDNAASAKDPLAFSGINIKDNKQENQVGSFKEEQFENGTCSEVVSGCVPSLQGKHENQRVAGDSSFHDNHLEGQGQNVIEREDERVKLRSTNEKTIRIKNRSDGLLENHVEKASLEGHFRRSIDSLPNGSGTRKLLNRDDDENFVRSTELNSKNKIPDPPPDTIKVKDASPFVNDENNSGDNSVLVNSEMMYPFKKRKFFYQTSSSTSDSWSHSQGTVDSSCTRVNGTNHGTGGTMHVIEESSSIADEEVHPESKGCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTTILGDELHVGILLQGKKIRDDSKTLIQTGISQDDKRHRLGFMLEPRHNRISSSYNEDPCFLTTGSRPKLSRQSTSLMLQQGTYNVSRERSTVKIENCAEGDLNMVPSLGEASANNNNVSKCRALVTVPAINMDALAVVPYRRKSGNSYFGQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDHAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLSAHAYWSQQQCKHQFKSM