Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83829.t1 | XP_003598997.1 | 92.4 | 619 | 47 | 0 | 12 | 630 | 2 | 620 | 0.00E+00 | 1121.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83829.t1 | Q9FNR3 | 41.9 | 644 | 354 | 7 | 1 | 629 | 1 | 639 | 7.7e-128 | 459.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83829.t1 | G7IZB2 | 92.4 | 619 | 47 | 0 | 12 | 630 | 2 | 620 | 0.0e+00 | 1121.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene83829 | 0.816973 | 4.20E-52 | -1.69E-46 |
| MS.gene051544 | MS.gene83829 | 0.812886 | 3.38E-51 | -1.69E-46 |
| MS.gene052902 | MS.gene83829 | 0.828427 | 9.05E-55 | -1.69E-46 |
| MS.gene053356 | MS.gene83829 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene83829 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene059009 | MS.gene83829 | 0.817793 | 2.74E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83829 | MS.gene069412 | PPI |
| MS.gene83829 | MS.gene44621 | PPI |
| MS.gene83829 | MS.gene91620 | PPI |
| MS.gene069415 | MS.gene83829 | PPI |
| MS.gene021896 | MS.gene83829 | PPI |
| MS.gene83829 | MS.gene021898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83829.t1 | MTR_3g025900 | 92.407 | 619 | 47 | 0 | 12 | 630 | 2 | 620 | 0.0 | 1151 |
| MS.gene83829.t1 | MTR_7g013770 | 40.828 | 676 | 352 | 7 | 1 | 629 | 3 | 677 | 8.43e-176 | 515 |
| MS.gene83829.t1 | MTR_4g103540 | 37.986 | 566 | 320 | 10 | 89 | 629 | 132 | 691 | 2.96e-121 | 375 |
| MS.gene83829.t1 | MTR_8g021330 | 34.615 | 572 | 332 | 10 | 89 | 624 | 46 | 611 | 3.85e-102 | 323 |
| MS.gene83829.t1 | MTR_5g073450 | 30.465 | 581 | 374 | 11 | 59 | 622 | 70 | 637 | 1.30e-90 | 294 |
| MS.gene83829.t1 | MTR_7g026630 | 31.788 | 604 | 363 | 15 | 52 | 630 | 80 | 659 | 4.61e-85 | 280 |
| MS.gene83829.t1 | MTR_1g090620 | 30.944 | 572 | 339 | 11 | 77 | 616 | 92 | 639 | 5.80e-85 | 279 |
| MS.gene83829.t1 | MTR_1g057560 | 30.396 | 556 | 348 | 9 | 77 | 616 | 91 | 623 | 5.40e-81 | 268 |
| MS.gene83829.t1 | MTR_3g031130 | 29.589 | 632 | 408 | 14 | 14 | 622 | 6 | 623 | 1.21e-80 | 267 |
| MS.gene83829.t1 | MTR_6g033310 | 30.651 | 522 | 332 | 7 | 115 | 620 | 220 | 727 | 2.37e-76 | 258 |
| MS.gene83829.t1 | MTR_5g073460 | 31.320 | 447 | 296 | 5 | 185 | 622 | 252 | 696 | 6.02e-69 | 237 |
| MS.gene83829.t1 | MTR_2g096230 | 31.808 | 437 | 283 | 6 | 187 | 617 | 153 | 580 | 1.02e-63 | 221 |
| MS.gene83829.t1 | MTR_4g062330 | 29.015 | 548 | 356 | 11 | 86 | 617 | 73 | 603 | 1.16e-60 | 213 |
| MS.gene83829.t1 | MTR_1g117090 | 28.804 | 552 | 335 | 9 | 115 | 616 | 123 | 666 | 1.39e-58 | 209 |
| MS.gene83829.t1 | MTR_1g067460 | 27.237 | 514 | 343 | 9 | 119 | 616 | 101 | 599 | 7.86e-58 | 205 |
| MS.gene83829.t1 | MTR_1g067480 | 27.413 | 518 | 342 | 13 | 119 | 619 | 103 | 603 | 2.83e-57 | 204 |
| MS.gene83829.t1 | MTR_5g073620 | 27.097 | 465 | 294 | 9 | 176 | 630 | 272 | 701 | 7.25e-45 | 172 |
| MS.gene83829.t1 | MTR_5g073620 | 28.994 | 169 | 113 | 3 | 454 | 616 | 899 | 1066 | 8.61e-12 | 68.9 |
| MS.gene83829.t1 | MTR_5g074130 | 25.799 | 438 | 298 | 9 | 191 | 616 | 251 | 673 | 2.39e-34 | 139 |
| MS.gene83829.t1 | MTR_5g073480 | 24.348 | 460 | 275 | 7 | 153 | 607 | 229 | 620 | 2.57e-33 | 135 |
| MS.gene83829.t1 | MTR_1g009620 | 25.157 | 477 | 323 | 10 | 171 | 629 | 202 | 662 | 1.32e-31 | 130 |
| MS.gene83829.t1 | MTR_1g017910 | 26.139 | 417 | 279 | 11 | 199 | 590 | 248 | 660 | 6.39e-28 | 119 |
| MS.gene83829.t1 | MTR_3g464010 | 25.225 | 444 | 287 | 12 | 192 | 616 | 249 | 666 | 8.42e-28 | 119 |
| MS.gene83829.t1 | MTR_4g008260 | 26.949 | 449 | 295 | 13 | 192 | 625 | 216 | 646 | 9.13e-27 | 115 |
| MS.gene83829.t1 | MTR_5g093530 | 25.836 | 329 | 210 | 8 | 265 | 591 | 246 | 542 | 2.57e-22 | 101 |
| MS.gene83829.t1 | MTR_5g073770 | 29.442 | 197 | 137 | 1 | 176 | 370 | 185 | 381 | 3.09e-22 | 99.8 |
| MS.gene83829.t1 | MTR_5g073920 | 23.326 | 463 | 317 | 14 | 167 | 616 | 220 | 657 | 3.72e-20 | 95.5 |
| MS.gene83829.t1 | MTR_0229s0040 | 32.065 | 184 | 108 | 4 | 450 | 620 | 31 | 210 | 2.15e-19 | 88.2 |
| MS.gene83829.t1 | MTR_5g073900 | 24.873 | 394 | 228 | 11 | 209 | 588 | 1 | 340 | 3.27e-19 | 90.1 |
| MS.gene83829.t1 | MTR_5g073780 | 28.994 | 169 | 113 | 3 | 454 | 616 | 54 | 221 | 5.49e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83829.t1 | AT5G61010 | 42.880 | 625 | 337 | 7 | 20 | 629 | 20 | 639 | 8.86e-165 | 486 |
| MS.gene83829.t1 | AT5G61010 | 42.880 | 625 | 337 | 7 | 20 | 629 | 20 | 639 | 8.86e-165 | 486 |
| MS.gene83829.t1 | AT3G29400 | 37.386 | 658 | 362 | 12 | 14 | 629 | 9 | 658 | 3.03e-137 | 416 |
| MS.gene83829.t1 | AT5G50380 | 38.715 | 576 | 305 | 12 | 86 | 629 | 123 | 682 | 1.76e-126 | 389 |
| MS.gene83829.t1 | AT3G14090 | 35.539 | 529 | 308 | 7 | 118 | 616 | 86 | 611 | 1.23e-102 | 325 |
| MS.gene83829.t1 | AT1G54090 | 33.219 | 584 | 327 | 8 | 89 | 624 | 49 | 617 | 6.47e-97 | 310 |
| MS.gene83829.t1 | AT1G72470 | 33.791 | 583 | 328 | 10 | 89 | 624 | 56 | 627 | 3.11e-93 | 300 |
| MS.gene83829.t1 | AT5G03540 | 32.402 | 537 | 311 | 8 | 103 | 616 | 6 | 513 | 5.78e-88 | 283 |
| MS.gene83829.t1 | AT5G03540 | 31.779 | 579 | 333 | 11 | 67 | 616 | 83 | 628 | 8.81e-88 | 286 |
| MS.gene83829.t1 | AT5G03540 | 31.261 | 595 | 341 | 12 | 67 | 616 | 83 | 654 | 1.16e-84 | 279 |
| MS.gene83829.t1 | AT5G58430 | 28.843 | 631 | 407 | 12 | 14 | 619 | 6 | 619 | 1.78e-83 | 275 |
| MS.gene83829.t1 | AT1G07000 | 29.858 | 633 | 376 | 16 | 14 | 619 | 6 | 597 | 7.48e-80 | 264 |
| MS.gene83829.t1 | AT5G52340 | 30.481 | 561 | 339 | 12 | 77 | 616 | 91 | 621 | 1.52e-79 | 264 |
| MS.gene83829.t1 | AT5G13990 | 31.373 | 561 | 353 | 12 | 87 | 630 | 148 | 693 | 4.18e-70 | 241 |
| MS.gene83829.t1 | AT5G13150 | 31.070 | 486 | 303 | 8 | 161 | 623 | 173 | 649 | 9.49e-70 | 239 |
| MS.gene83829.t1 | AT3G09520 | 29.091 | 550 | 355 | 10 | 88 | 618 | 73 | 606 | 5.98e-68 | 233 |
| MS.gene83829.t1 | AT1G07725 | 29.755 | 531 | 334 | 11 | 116 | 630 | 96 | 603 | 1.96e-67 | 231 |
| MS.gene83829.t1 | AT2G28640 | 29.760 | 541 | 344 | 11 | 91 | 622 | 69 | 582 | 5.85e-66 | 227 |
| MS.gene83829.t1 | AT5G59730 | 29.803 | 557 | 350 | 12 | 86 | 619 | 61 | 599 | 3.03e-64 | 223 |
| MS.gene83829.t1 | AT2G39380 | 28.101 | 516 | 347 | 7 | 119 | 620 | 107 | 612 | 3.88e-64 | 223 |
| MS.gene83829.t1 | AT5G59730 | 29.803 | 557 | 350 | 12 | 86 | 619 | 61 | 599 | 4.02e-64 | 223 |
| MS.gene83829.t1 | AT5G52350 | 28.713 | 505 | 320 | 10 | 136 | 621 | 102 | 585 | 2.67e-59 | 209 |
| MS.gene83829.t1 | AT3G55150 | 28.042 | 567 | 370 | 11 | 73 | 620 | 65 | 612 | 6.20e-59 | 209 |
| MS.gene83829.t1 | AT3G09530 | 26.335 | 543 | 370 | 9 | 91 | 616 | 71 | 600 | 7.94e-52 | 189 |
| MS.gene83829.t1 | AT2G28650 | 29.327 | 416 | 280 | 5 | 202 | 616 | 152 | 554 | 1.57e-49 | 182 |
| MS.gene83829.t1 | AT4G31540 | 25.339 | 442 | 298 | 9 | 197 | 620 | 231 | 658 | 5.87e-33 | 135 |
| MS.gene83829.t1 | AT1G51640 | 25.971 | 412 | 266 | 13 | 199 | 588 | 196 | 590 | 6.40e-22 | 100 |
Find 84 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTTATTTGGAGATTTC+TGG | 0.101249 | 3.2:-15863892 | MS.gene83829:CDS |
| TGATCTACAATGTTATATTT+TGG | 0.148649 | 3.2:-15863552 | MS.gene83829:CDS |
| CATCGAAAATGTGCTTAAAA+TGG | 0.261889 | 3.2:-15864641 | MS.gene83829:CDS |
| ATCAAGGCACTTGTTGAATA+TGG | 0.262018 | 3.2:-15864160 | MS.gene83829:CDS |
| ACTTGACATGTATGAGGTTT+TGG | 0.277794 | 3.2:-15864389 | MS.gene83829:CDS |
| TCTTCGCGAAGTTCTTTATC+AGG | 0.287927 | 3.2:+15863677 | None:intergenic |
| CATCGACAATAAGAAGATTA+AGG | 0.292606 | 3.2:+15864131 | None:intergenic |
| TGGCCTCACCAAAATTTAAA+AGG | 0.300130 | 3.2:+15864452 | None:intergenic |
| CCAGGAAAACATTTATTTGA+TGG | 0.305526 | 3.2:+15864223 | None:intergenic |
| TGAGAATGGTGCAAAGATTT+TGG | 0.309875 | 3.2:+15863512 | None:intergenic |
| CACAAACTTCTAAGAAGCTT+TGG | 0.327792 | 3.2:-15864298 | MS.gene83829:CDS |
| TGAAGATAAGGTAATGAGTT+TGG | 0.328772 | 3.2:-15865160 | MS.gene83829:CDS |
| TTTGATTGATTGAACACAAT+TGG | 0.329865 | 3.2:+15865229 | None:intergenic |
| AACTGAACCTCGAGATATTT+CGG | 0.338257 | 3.2:+15864480 | None:intergenic |
| GTTCAATTGCTTGCAACTTA+AGG | 0.339799 | 3.2:-15864048 | MS.gene83829:CDS |
| AGTTGTTATGTCAAGGCTTA+AGG | 0.343431 | 3.2:-15864998 | MS.gene83829:CDS |
| GAAGTATACAAAACACAAAC+AGG | 0.347813 | 3.2:-15863710 | MS.gene83829:CDS |
| CCCAAATCCATTTCTTTATC+CGG | 0.349318 | 3.2:+15864599 | None:intergenic |
| CAAAAGTTTGATTCTGTGAA+TGG | 0.352739 | 3.2:-15865069 | MS.gene83829:CDS |
| ATACACAATATCAACTCTAT+TGG | 0.354741 | 3.2:+15864909 | None:intergenic |
| TTGAGATCTTCAAGTATAGA+AGG | 0.357814 | 3.2:+15864784 | None:intergenic |
| GCCGGATAAAGAAATGGATT+TGG | 0.358377 | 3.2:-15864600 | MS.gene83829:CDS |
| TCTTCACAAGCTGAGATCAT+AGG | 0.372051 | 3.2:+15865354 | None:intergenic |
| GGCGAGCAGTACTATTGATT+TGG | 0.376403 | 3.2:-15864812 | MS.gene83829:CDS |
| TCGCGAAGATCTACAAATAT+CGG | 0.379075 | 3.2:-15863663 | MS.gene83829:CDS |
| GCCATATCTTCATTGCTTCA+AGG | 0.392057 | 3.2:-15864714 | MS.gene83829:CDS |
| ATTGTGTATGATGGATCATT+TGG | 0.401464 | 3.2:-15864895 | MS.gene83829:CDS |
| CATTCATTACATGGTTCAAA+AGG | 0.407674 | 3.2:-15863936 | MS.gene83829:CDS |
| TCCTTGAAGCAATGAAGATA+TGG | 0.418681 | 3.2:+15864713 | None:intergenic |
| CCGGATAAAGAAATGGATTT+GGG | 0.420824 | 3.2:-15864599 | MS.gene83829:CDS |
| CTTGGATTTGTTGCACAAGT+TGG | 0.424158 | 3.2:+15864003 | None:intergenic |
| TTCACTTTCTATGTTGAGAA+TGG | 0.431758 | 3.2:+15863498 | None:intergenic |
| CGTGTGCGTTCCCATTGTTA+TGG | 0.447382 | 3.2:+15864432 | None:intergenic |
| TGCTTCAAGGAGAGAAGCCT+TGG | 0.450661 | 3.2:-15864701 | MS.gene83829:CDS |
| AAGCAGATTCTCGGAGACTT+TGG | 0.454981 | 3.2:-15864526 | MS.gene83829:CDS |
| TGCAGCTCAACACATTATAA+AGG | 0.458305 | 3.2:-15865313 | MS.gene83829:CDS |
| CAATTGTGTAAGCAGATTCT+CGG | 0.463987 | 3.2:-15864535 | MS.gene83829:CDS |
| TGAGAAGTGGATTAAGTATA+CGG | 0.464454 | 3.2:-15863579 | MS.gene83829:CDS |
| GGAGAAACAAAACTGATAAA+CGG | 0.464846 | 3.2:+15864501 | None:intergenic |
| GAATTGAAAGACATGTAATC+AGG | 0.471319 | 3.2:+15864931 | None:intergenic |
| TTTGGTGAGGCCATAACAAT+GGG | 0.474376 | 3.2:-15864442 | MS.gene83829:CDS |
| GTCAAGGCTTAAGGATGAGT+TGG | 0.479252 | 3.2:-15864989 | MS.gene83829:CDS |
| TTGTTTACTTGACATGTATG+AGG | 0.480736 | 3.2:-15864395 | MS.gene83829:CDS |
| GAAATGGATTTGGGCGATGA+AGG | 0.482082 | 3.2:-15864590 | MS.gene83829:CDS |
| GCTTAAATGTGTTGAAGATA+AGG | 0.482110 | 3.2:-15865172 | MS.gene83829:CDS |
| GTTTGCTTCAAATTACCATC+AGG | 0.485110 | 3.2:-15864743 | MS.gene83829:CDS |
| TGAATCGCCGGATAAAGAAA+TGG | 0.490537 | 3.2:-15864606 | MS.gene83829:CDS |
| CCGGTATAACTTCGGTAAGC+AGG | 0.491544 | 3.2:+15863623 | None:intergenic |
| AGCAACATCAGTGTATAACT+TGG | 0.499600 | 3.2:+15863985 | None:intergenic |
| GAATGGAAATTTGAAGCATA+AGG | 0.507338 | 3.2:-15865052 | MS.gene83829:CDS |
| CCTGCTTACCGAAGTTATAC+CGG | 0.507813 | 3.2:-15863623 | MS.gene83829:CDS |
| CGTCTAACATTGATGAGAAG+TGG | 0.516919 | 3.2:-15863592 | MS.gene83829:CDS |
| AGAGTTGATATTGTGTATGA+TGG | 0.520793 | 3.2:-15864904 | MS.gene83829:CDS |
| GATGAATAACATTCATTACA+TGG | 0.527155 | 3.2:-15863945 | MS.gene83829:CDS |
| GAGGAAAGTTTATCGAATTG+TGG | 0.528033 | 3.2:-15863785 | MS.gene83829:CDS |
| AAAATATCAACGAGGTTTCG+AGG | 0.528128 | 3.2:-15864858 | MS.gene83829:CDS |
| AGTGGCACTGCTTGAATCGC+CGG | 0.529546 | 3.2:-15864618 | MS.gene83829:CDS |
| TCATGACATATCTTGTAAGA+TGG | 0.530309 | 3.2:+15864188 | None:intergenic |
| TGGATCATTTGGTTCAATTG+AGG | 0.538106 | 3.2:-15864884 | MS.gene83829:CDS |
| TAGTACTGCTCGCCTCGGAT+TGG | 0.539033 | 3.2:+15864821 | None:intergenic |
| TTCTGGCTTCGTCGACATGT+TGG | 0.539592 | 3.2:-15863875 | MS.gene83829:CDS |
| TTTGTATACTTCACCAAAAG+CGG | 0.555253 | 3.2:+15863721 | None:intergenic |
| AATCTCCAAATAAATTGCAT+AGG | 0.555389 | 3.2:+15863897 | None:intergenic |
| GTGTTCAATCAATCAAAGAA+AGG | 0.555579 | 3.2:-15865223 | MS.gene83829:CDS |
| GAAGCTATGAGAAGGTGACT+TGG | 0.564885 | 3.2:-15863832 | MS.gene83829:CDS |
| AATGTTAGACGAGTTTCTAC+CGG | 0.566162 | 3.2:+15863604 | None:intergenic |
| ATCAATAGTACTGCTCGCCT+CGG | 0.580823 | 3.2:+15864816 | None:intergenic |
| AGATATGGCAAAACTCCTGA+TGG | 0.585596 | 3.2:+15864728 | None:intergenic |
| TGTACTTTCTGTGTTTAGTG+AGG | 0.604788 | 3.2:-15863804 | MS.gene83829:CDS |
| AGATGGTGAACACCTCCACC+AGG | 0.608901 | 3.2:+15864205 | None:intergenic |
| TGAAACTTCGACTGATCTTG+CGG | 0.612837 | 3.2:-15864110 | MS.gene83829:CDS |
| AGTTTCTACCGGTATAACTT+CGG | 0.613307 | 3.2:+15863615 | None:intergenic |
| TGTTTCTCCGAAATATCTCG+AGG | 0.618316 | 3.2:-15864487 | MS.gene83829:CDS |
| GCACAAGTTGGATTCTAGAG+AGG | 0.623270 | 3.2:+15864015 | None:intergenic |
| AAAATGTGCTTAAAATGGAG+TGG | 0.627109 | 3.2:-15864636 | MS.gene83829:CDS |
| TTATGCTAGAAGCTATGAGA+AGG | 0.634466 | 3.2:-15863840 | MS.gene83829:CDS |
| ATATGTCATGAATTACATCA+AGG | 0.636314 | 3.2:-15864176 | MS.gene83829:CDS |
| AATGACAAAGTACTCAGCCA+AGG | 0.644750 | 3.2:+15864684 | None:intergenic |
| TAGTGACGGTATCCAATCCG+AGG | 0.672922 | 3.2:-15864833 | MS.gene83829:CDS |
| GAGGTTTCGAGGAGTAGTGA+CGG | 0.702293 | 3.2:-15864847 | MS.gene83829:CDS |
| TTGTGAAGAAGATCAAGACA+TGG | 0.702934 | 3.2:-15865340 | MS.gene83829:CDS |
| TATACAAAACACAAACAGGG+TGG | 0.717618 | 3.2:-15863706 | MS.gene83829:CDS |
| AAGTATACAAAACACAAACA+GGG | 0.726191 | 3.2:-15863709 | MS.gene83829:CDS |
| TGAGGATGAAAATATCAACG+AGG | 0.787428 | 3.2:-15864866 | MS.gene83829:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACCTATGCAATTTATT+TGG | - | chr3.2:15864966-15864985 | MS.gene83829:CDS | 20.0% |
| !!! | AAGTAAACAAAACAGTTTTT+CGG | + | chr3.2:15864463-15864482 | None:intergenic | 20.0% |
| !!! | TGATCTACAATGTTATATTT+TGG | - | chr3.2:15865316-15865335 | MS.gene83829:CDS | 20.0% |
| ! | AAGTATACAAAACACAAACA+GGG | - | chr3.2:15865159-15865178 | MS.gene83829:CDS | 25.0% |
| ! | AATCTCCAAATAAATTGCAT+AGG | + | chr3.2:15864974-15864993 | None:intergenic | 25.0% |
| ! | ATACACAATATCAACTCTAT+TGG | + | chr3.2:15863962-15863981 | None:intergenic | 25.0% |
| ! | ATATGTCATGAATTACATCA+AGG | - | chr3.2:15864692-15864711 | MS.gene83829:CDS | 25.0% |
| ! | GATGAATAACATTCATTACA+TGG | - | chr3.2:15864923-15864942 | MS.gene83829:CDS | 25.0% |
| ! | TTTGATTGATTGAACACAAT+TGG | + | chr3.2:15863642-15863661 | None:intergenic | 25.0% |
| !! | AGTAAACAAAACAGTTTTTC+GGG | + | chr3.2:15864462-15864481 | None:intergenic | 25.0% |
| AAAATGTGCTTAAAATGGAG+TGG | - | chr3.2:15864232-15864251 | MS.gene83829:CDS | 30.0% | |
| CAAAAGTTTGATTCTGTGAA+TGG | - | chr3.2:15863799-15863818 | MS.gene83829:CDS | 30.0% | |
| CATCGAAAATGTGCTTAAAA+TGG | - | chr3.2:15864227-15864246 | MS.gene83829:CDS | 30.0% | |
| CATCGACAATAAGAAGATTA+AGG | + | chr3.2:15864740-15864759 | None:intergenic | 30.0% | |
| CATTCATTACATGGTTCAAA+AGG | - | chr3.2:15864932-15864951 | MS.gene83829:CDS | 30.0% | |
| CCAGGAAAACATTTATTTGA+TGG | + | chr3.2:15864648-15864667 | None:intergenic | 30.0% | |
| GAAGTATACAAAACACAAAC+AGG | - | chr3.2:15865158-15865177 | MS.gene83829:CDS | 30.0% | |
| GAATTGAAAGACATGTAATC+AGG | + | chr3.2:15863940-15863959 | None:intergenic | 30.0% | |
| GCAATTTATTTGGAGATTTC+TGG | - | chr3.2:15864976-15864995 | MS.gene83829:CDS | 30.0% | |
| GCTTAAATGTGTTGAAGATA+AGG | - | chr3.2:15863696-15863715 | MS.gene83829:CDS | 30.0% | |
| GGAGAAACAAAACTGATAAA+CGG | + | chr3.2:15864370-15864389 | None:intergenic | 30.0% | |
| GTGTTCAATCAATCAAAGAA+AGG | - | chr3.2:15863645-15863664 | MS.gene83829:CDS | 30.0% | |
| TCATGACATATCTTGTAAGA+TGG | + | chr3.2:15864683-15864702 | None:intergenic | 30.0% | |
| TGAAGATAAGGTAATGAGTT+TGG | - | chr3.2:15863708-15863727 | MS.gene83829:CDS | 30.0% | |
| TTGAGATCTTCAAGTATAGA+AGG | + | chr3.2:15864087-15864106 | None:intergenic | 30.0% | |
| TTGTTTACTTGACATGTATG+AGG | - | chr3.2:15864473-15864492 | MS.gene83829:CDS | 30.0% | |
| TTTGTATACTTCACCAAAAG+CGG | + | chr3.2:15865150-15865169 | None:intergenic | 30.0% | |
| ! | CAAACTTTTGTTGCAAAGTT+TGG | + | chr3.2:15863789-15863808 | None:intergenic | 30.0% |
| ! | CCATCAAATAAATGTTTTCC+TGG | - | chr3.2:15864645-15864664 | MS.gene83829:CDS | 30.0% |
| ! | GAATGGAAATTTGAAGCATA+AGG | - | chr3.2:15863816-15863835 | MS.gene83829:CDS | 30.0% |
| ! | GTTTTGCGCCTTTTAAATTT+TGG | - | chr3.2:15864408-15864427 | MS.gene83829:CDS | 30.0% |
| ! | TCAAATAAATGTTTTCCTGG+TGG | - | chr3.2:15864648-15864667 | MS.gene83829:CDS | 30.0% |
| ! | TTTTGCAAGTTGTTATGTCA+AGG | - | chr3.2:15863863-15863882 | MS.gene83829:CDS | 30.0% |
| !! | AAAGATTTTAGTACCGCTTT+TGG | - | chr3.2:15865134-15865153 | MS.gene83829:CDS | 30.0% |
| !! | AGAGTTGATATTGTGTATGA+TGG | - | chr3.2:15863964-15863983 | MS.gene83829:CDS | 30.0% |
| !! | ATTGTGTATGATGGATCATT+TGG | - | chr3.2:15863973-15863992 | MS.gene83829:CDS | 30.0% |
| !! | GAAGTTGATTCTTTTGTTAG+AGG | - | chr3.2:15864540-15864559 | MS.gene83829:CDS | 30.0% |
| !! | TGAGAAGTGGATTAAGTATA+CGG | - | chr3.2:15865289-15865308 | MS.gene83829:CDS | 30.0% |
| AAAATATCAACGAGGTTTCG+AGG | - | chr3.2:15864010-15864029 | MS.gene83829:CDS | 35.0% | |
| AACTGAACCTCGAGATATTT+CGG | + | chr3.2:15864391-15864410 | None:intergenic | 35.0% | |
| AATGTTAGACGAGTTTCTAC+CGG | + | chr3.2:15865267-15865286 | None:intergenic | 35.0% | |
| AGCAACATCAGTGTATAACT+TGG | + | chr3.2:15864886-15864905 | None:intergenic | 35.0% | |
| AGTTGTTATGTCAAGGCTTA+AGG | - | chr3.2:15863870-15863889 | MS.gene83829:CDS | 35.0% | |
| AGTTTCTACCGGTATAACTT+CGG | + | chr3.2:15865256-15865275 | None:intergenic | 35.0% | |
| CAATTGTGTAAGCAGATTCT+CGG | - | chr3.2:15864333-15864352 | MS.gene83829:CDS | 35.0% | |
| CCCAAATCCATTTCTTTATC+CGG | + | chr3.2:15864272-15864291 | None:intergenic | 35.0% | |
| GAGGAAAGTTTATCGAATTG+TGG | - | chr3.2:15865083-15865102 | MS.gene83829:CDS | 35.0% | |
| GTTCAATTGCTTGCAACTTA+AGG | - | chr3.2:15864820-15864839 | MS.gene83829:CDS | 35.0% | |
| GTTTGCTTCAAATTACCATC+AGG | - | chr3.2:15864125-15864144 | MS.gene83829:CDS | 35.0% | |
| TATACAAAACACAAACAGGG+TGG | - | chr3.2:15865162-15865181 | MS.gene83829:CDS | 35.0% | |
| TCCTTGAAGCAATGAAGATA+TGG | + | chr3.2:15864158-15864177 | None:intergenic | 35.0% | |
| TCGCGAAGATCTACAAATAT+CGG | - | chr3.2:15865205-15865224 | MS.gene83829:CDS | 35.0% | |
| TGAGGATGAAAATATCAACG+AGG | - | chr3.2:15864002-15864021 | MS.gene83829:CDS | 35.0% | |
| TGCAGCTCAACACATTATAA+AGG | - | chr3.2:15863555-15863574 | MS.gene83829:CDS | 35.0% | |
| TGGCCTCACCAAAATTTAAA+AGG | + | chr3.2:15864419-15864438 | None:intergenic | 35.0% | |
| TGTACTTTCTGTGTTTAGTG+AGG | - | chr3.2:15865064-15865083 | MS.gene83829:CDS | 35.0% | |
| TTATGCTAGAAGCTATGAGA+AGG | - | chr3.2:15865028-15865047 | MS.gene83829:CDS | 35.0% | |
| TTGTGAAGAAGATCAAGACA+TGG | - | chr3.2:15863528-15863547 | MS.gene83829:CDS | 35.0% | |
| ! | AATAAATGTTTTCCTGGTGG+AGG | - | chr3.2:15864651-15864670 | MS.gene83829:CDS | 35.0% |
| ! | ACTTGACATGTATGAGGTTT+TGG | - | chr3.2:15864479-15864498 | MS.gene83829:CDS | 35.0% |
| ! | ATCAAGGCACTTGTTGAATA+TGG | - | chr3.2:15864708-15864727 | MS.gene83829:CDS | 35.0% |
| ! | CACAAACTTCTAAGAAGCTT+TGG | - | chr3.2:15864570-15864589 | MS.gene83829:CDS | 35.0% |
| ! | CCGGATAAAGAAATGGATTT+GGG | - | chr3.2:15864269-15864288 | MS.gene83829:CDS | 35.0% |
| ! | TGAGAATGGTGCAAAGATTT+TGG | + | chr3.2:15865359-15865378 | None:intergenic | 35.0% |
| ! | TGAGTTGAGAAAAACTCTCT+TGG | - | chr3.2:15863606-15863625 | MS.gene83829:CDS | 35.0% |
| ! | TGGATCATTTGGTTCAATTG+AGG | - | chr3.2:15863984-15864003 | MS.gene83829:CDS | 35.0% |
| AGATATGGCAAAACTCCTGA+TGG | + | chr3.2:15864143-15864162 | None:intergenic | 40.0% | |
| CGTCTAACATTGATGAGAAG+TGG | - | chr3.2:15865276-15865295 | MS.gene83829:CDS | 40.0% | |
| GCCATATCTTCATTGCTTCA+AGG | - | chr3.2:15864154-15864173 | MS.gene83829:CDS | 40.0% | |
| TCTTCACAAGCTGAGATCAT+AGG | + | chr3.2:15863517-15863536 | None:intergenic | 40.0% | |
| TCTTCGCGAAGTTCTTTATC+AGG | + | chr3.2:15865194-15865213 | None:intergenic | 40.0% | |
| TGAAACTTCGACTGATCTTG+CGG | - | chr3.2:15864758-15864777 | MS.gene83829:CDS | 40.0% | |
| TGAATCGCCGGATAAAGAAA+TGG | - | chr3.2:15864262-15864281 | MS.gene83829:CDS | 40.0% | |
| TGTTTCTCCGAAATATCTCG+AGG | - | chr3.2:15864381-15864400 | MS.gene83829:CDS | 40.0% | |
| TTTGGTGAGGCCATAACAAT+GGG | - | chr3.2:15864426-15864445 | MS.gene83829:CDS | 40.0% | |
| ! | AATGACAAAGTACTCAGCCA+AGG | + | chr3.2:15864187-15864206 | None:intergenic | 40.0% |
| ! | GCCGGATAAAGAAATGGATT+TGG | - | chr3.2:15864268-15864287 | MS.gene83829:CDS | 40.0% |
| ! | TTTTGGTGAGGCCATAACAA+TGG | - | chr3.2:15864425-15864444 | MS.gene83829:CDS | 40.0% |
| !! | CTTGGATTTGTTGCACAAGT+TGG | + | chr3.2:15864868-15864887 | None:intergenic | 40.0% |
| !! | GCGCCTTTTAAATTTTGGTG+AGG | - | chr3.2:15864413-15864432 | MS.gene83829:CDS | 40.0% |
| AAGCAGATTCTCGGAGACTT+TGG | - | chr3.2:15864342-15864361 | MS.gene83829:CDS | 45.0% | |
| ATCAATAGTACTGCTCGCCT+CGG | + | chr3.2:15864055-15864074 | None:intergenic | 45.0% | |
| CCTGCTTACCGAAGTTATAC+CGG | - | chr3.2:15865245-15865264 | MS.gene83829:CDS | 45.0% | |
| GAAGCTATGAGAAGGTGACT+TGG | - | chr3.2:15865036-15865055 | MS.gene83829:CDS | 45.0% | |
| GTCAAGGCTTAAGGATGAGT+TGG | - | chr3.2:15863879-15863898 | MS.gene83829:CDS | 45.0% | |
| ! | GAAATGGATTTGGGCGATGA+AGG | - | chr3.2:15864278-15864297 | MS.gene83829:CDS | 45.0% |
| ! | GCACAAGTTGGATTCTAGAG+AGG | + | chr3.2:15864856-15864875 | None:intergenic | 45.0% |
| ! | GGCGAGCAGTACTATTGATT+TGG | - | chr3.2:15864056-15864075 | MS.gene83829:CDS | 45.0% |
| CCGGTATAACTTCGGTAAGC+AGG | + | chr3.2:15865248-15865267 | None:intergenic | 50.0% | |
| CGTGTGCGTTCCCATTGTTA+TGG | + | chr3.2:15864439-15864458 | None:intergenic | 50.0% | |
| GAGGTTTCGAGGAGTAGTGA+CGG | - | chr3.2:15864021-15864040 | MS.gene83829:CDS | 50.0% | |
| TAGTGACGGTATCCAATCCG+AGG | - | chr3.2:15864035-15864054 | MS.gene83829:CDS | 50.0% | |
| TGCTTCAAGGAGAGAAGCCT+TGG | - | chr3.2:15864167-15864186 | MS.gene83829:CDS | 50.0% | |
| !! | TTCTGGCTTCGTCGACATGT+TGG | - | chr3.2:15864993-15865012 | MS.gene83829:CDS | 50.0% |
| AGATGGTGAACACCTCCACC+AGG | + | chr3.2:15864666-15864685 | None:intergenic | 55.0% | |
| AGTGGCACTGCTTGAATCGC+CGG | - | chr3.2:15864250-15864269 | MS.gene83829:CDS | 55.0% | |
| TAGTACTGCTCGCCTCGGAT+TGG | + | chr3.2:15864050-15864069 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 15863499 | 15865391 | 15863499 | ID=MS.gene83829 |
| chr3.2 | mRNA | 15863499 | 15865391 | 15863499 | ID=MS.gene83829.t1;Parent=MS.gene83829 |
| chr3.2 | exon | 15863499 | 15865391 | 15863499 | ID=MS.gene83829.t1.exon1;Parent=MS.gene83829.t1 |
| chr3.2 | CDS | 15863499 | 15865391 | 15863499 | ID=cds.MS.gene83829.t1;Parent=MS.gene83829.t1 |
| Gene Sequence |
| Protein sequence |
