AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84069

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84069.t1 MTR_5g022730 98.710 155 2 0 1 155 1 155 1.03e-111 313
MS.gene84069.t1 MTR_5g022710 96.774 155 5 0 1 155 1 155 6.84e-110 309
MS.gene84069.t1 MTR_7g021400 86.364 154 21 0 2 155 3 156 4.75e-91 261
MS.gene84069.t1 MTR_7g094150 86.538 156 20 1 1 155 1 156 1.83e-89 257
MS.gene84069.t1 MTR_7g094170 84.416 154 24 0 2 155 3 156 4.50e-88 254
MS.gene84069.t1 MTR_4g032400 78.710 155 32 1 2 155 9 163 2.37e-85 247
MS.gene84069.t1 MTR_7g021380 82.468 154 27 0 2 155 3 156 4.70e-84 244
MS.gene84069.t1 MTR_4g032450 75.484 155 37 1 2 155 21 175 4.71e-84 244
MS.gene84069.t1 MTR_3g110048 76.282 156 35 1 2 155 3 158 4.76e-84 244
MS.gene84069.t1 MTR_7g094120 74.359 156 38 1 2 155 4 159 8.51e-83 241
MS.gene84069.t1 MTR_5g085030 72.903 155 41 1 1 154 1 155 1.45e-78 230
MS.gene84069.t1 MTR_8g056060 74.194 155 39 1 2 155 3 157 2.83e-78 229
MS.gene84069.t1 MTR_7g094280 72.152 158 41 2 1 155 1 158 5.71e-78 228
MS.gene84069.t1 MTR_8g468480 70.513 156 45 1 1 155 1 156 1.95e-77 227
MS.gene84069.t1 MTR_4g032460 73.077 156 35 2 1 155 1 150 8.58e-72 213
MS.gene84069.t1 MTR_4g032510 69.677 155 39 3 3 155 5 153 1.75e-71 212
MS.gene84069.t1 MTR_7g094310 68.987 158 36 3 1 155 1 148 2.42e-70 209
MS.gene84069.t1 MTR_4g032500 67.097 155 44 2 2 155 4 152 1.74e-69 207
MS.gene84069.t1 MTR_5g082340 67.308 156 39 2 1 155 1 145 1.73e-65 196
MS.gene84069.t1 MTR_4g033455 61.039 154 60 0 2 155 7 160 2.18e-65 197
MS.gene84069.t1 MTR_4g017860 54.872 195 45 3 4 155 26 220 1.87e-63 194
MS.gene84069.t1 MTR_1g099870 84.314 102 14 1 56 155 2 103 7.17e-59 178
MS.gene84069.t1 MTR_4g033460 60.714 140 55 0 2 141 7 146 8.95e-59 183
MS.gene84069.t1 MTR_4g033460 60.215 93 29 1 40 132 161 245 1.86e-30 110
MS.gene84069.t1 MTR_4g021390 59.091 154 60 1 2 155 5 155 1.67e-58 179
MS.gene84069.t1 MTR_8g089730 69.919 123 20 1 33 155 1 106 2.96e-50 156
MS.gene84069.t1 MTR_7g094320 55.414 157 28 2 1 155 1 117 4.05e-47 149
MS.gene84069.t1 MTR_4g032420 61.417 127 34 3 30 155 38 150 6.43e-47 149
MS.gene84069.t1 MTR_4g032470 51.370 146 27 2 11 155 32 134 1.19e-43 140
MS.gene84069.t1 MTR_7g006370 55.000 140 54 2 2 141 5 135 1.55e-43 140
MS.gene84069.t1 MTR_4g131980 65.000 120 36 3 1 118 1 116 1.18e-41 136
MS.gene84069.t1 MTR_4g127240 66.990 103 28 4 39 139 26 124 1.89e-40 132
MS.gene84069.t1 MTR_7g094410 53.247 154 30 4 2 113 3 156 3.34e-40 133
MS.gene84069.t1 MTR_7g094360 46.512 172 38 4 1 118 1 172 2.12e-38 129
MS.gene84069.t1 MTR_8g056090 49.351 154 45 6 2 153 3 125 8.07e-36 120
MS.gene84069.t1 MTR_4g119422 50.000 146 66 2 2 145 228 368 1.75e-35 126
MS.gene84069.t1 MTR_1g112590 39.355 155 78 2 7 145 1 155 1.63e-32 113
MS.gene84069.t1 MTR_7g071200 71.014 69 19 1 88 155 4 72 1.22e-28 100
MS.gene84069.t1 MTR_2g066010 41.722 151 76 5 7 154 20 161 2.99e-27 101
MS.gene84069.t1 MTR_4g032520 44.444 144 38 4 28 153 1 120 4.23e-27 99.0
MS.gene84069.t1 MTR_2g065720 41.060 151 77 5 7 154 37 178 3.84e-26 98.6
MS.gene84069.t1 MTR_5g096950 36.538 156 80 3 3 154 2 142 2.69e-23 89.7
MS.gene84069.t1 MTR_7g094350 48.598 107 33 2 2 108 3 87 2.74e-23 90.9
MS.gene84069.t1 MTR_7g094350 51.685 89 39 3 47 134 102 187 7.52e-20 82.0
MS.gene84069.t1 MTR_4g032540 65.079 63 21 1 89 150 70 132 4.53e-23 88.6
MS.gene84069.t1 MTR_2g018980 34.667 150 85 3 7 155 3 140 2.59e-22 87.0
MS.gene84069.t1 MTR_1g042510 35.256 156 63 4 7 145 1 135 4.45e-22 89.7
MS.gene84069.t1 MTR_1g112570 36.691 139 63 4 7 127 1 132 1.06e-20 85.9
MS.gene84069.t1 MTR_5g078680 32.051 156 68 3 7 145 1 135 2.08e-19 82.0
MS.gene84069.t1 MTR_6g053620 36.806 144 81 5 7 145 17 155 3.25e-19 82.8
MS.gene84069.t1 MTR_6g053620 36.806 144 81 5 7 145 17 155 3.69e-19 82.8
MS.gene84069.t1 MTR_8g007195 34.286 140 80 4 9 142 13 146 2.17e-18 80.1
MS.gene84069.t1 MTR_7g077810 34.722 144 84 4 7 145 18 156 7.62e-18 79.0
MS.gene84069.t1 MTR_8g007185 32.877 146 87 4 7 146 11 151 7.42e-17 75.9
MS.gene84069.t1 MTR_2g100830 33.793 145 80 5 9 145 13 149 7.90e-17 75.9
MS.gene84069.t1 MTR_2g100825 32.867 143 87 4 7 145 11 148 1.32e-16 75.1
MS.gene84069.t1 MTR_8g007205 32.877 146 87 4 7 146 11 151 1.33e-16 75.1
MS.gene84069.t1 MTR_7g036780 32.609 138 83 5 2 134 4 136 3.46e-15 70.5
MS.gene84069.t1 MTR_4g131910 39.286 112 58 2 4 111 133 238 1.23e-14 68.9
MS.gene84069.t1 MTR_8g030670 30.345 145 91 3 9 148 20 159 2.10e-14 69.3
MS.gene84069.t1 MTR_3g061700 33.684 95 56 2 52 145 1 89 1.85e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84069.t1 AT5G42190 76.608 171 24 1 1 155 1 171 7.00e-86 249
MS.gene84069.t1 AT1G75950 78.616 159 28 1 3 155 2 160 1.67e-83 243
MS.gene84069.t1 AT1G20140 73.006 163 36 3 1 155 1 163 2.22e-82 240
MS.gene84069.t1 AT2G25700 69.325 163 42 3 1 155 1 163 9.93e-78 228
MS.gene84069.t1 AT4G34210 70.779 154 41 2 3 155 2 152 9.14e-77 225
MS.gene84069.t1 AT4G34470 70.130 154 42 2 3 155 2 152 5.40e-76 223
MS.gene84069.t1 AT3G21860 67.742 155 44 3 3 155 2 152 2.03e-68 204
MS.gene84069.t1 AT3G21850 65.161 155 49 3 3 155 2 153 3.17e-67 201
MS.gene84069.t1 AT3G60010 64.331 157 47 3 4 155 2 154 2.04e-66 199
MS.gene84069.t1 AT2G03170 62.987 154 50 2 3 155 2 149 9.10e-64 192
MS.gene84069.t1 AT2G03190 56.024 166 60 3 3 155 2 167 2.63e-59 182
MS.gene84069.t1 AT3G60020 56.962 158 56 3 4 155 2 153 7.07e-57 175
MS.gene84069.t1 AT3G21830 57.143 154 62 2 3 155 2 152 3.27e-56 173
MS.gene84069.t1 AT2G03160 49.206 189 60 3 3 155 2 190 4.57e-56 174
MS.gene84069.t1 AT2G20160 55.556 153 62 2 3 154 2 149 8.86e-54 167
MS.gene84069.t1 AT3G25650 57.831 166 57 5 3 155 2 167 1.35e-53 167
MS.gene84069.t1 AT1G10230 57.419 155 63 2 3 154 2 156 2.13e-52 164
MS.gene84069.t1 AT3G21840 59.167 120 43 3 3 120 2 117 6.22e-38 126
MS.gene84069.t1 AT3G53060 66.279 86 22 3 28 112 1 80 7.63e-32 109
MS.gene84069.t1 AT3G61415 34.028 144 85 5 7 145 18 156 2.37e-16 74.7
MS.gene84069.t1 AT3G61415 33.333 144 86 4 7 145 18 156 2.47e-16 74.7
MS.gene84069.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.31e-16 74.3
MS.gene84069.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.31e-16 74.3
MS.gene84069.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.89e-16 74.3
MS.gene84069.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.89e-16 74.3
MS.gene84069.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.89e-16 74.3

Find 40 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATATCAAGAGCTTGC+TGG 0.358298 1.3:+32985180 MS.gene84069:CDS
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1.3:+32983498 MS.gene84069:CDS
CAACGTTACCAGCAAGATCT+TGG 0.386921 1.3:+32983582 MS.gene84069:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 1.3:+32983666 MS.gene84069:CDS
CGAGTTCGTCAAGGTTGATC+AGG 0.435035 1.3:+32983693 MS.gene84069:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1.3:-32983590 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 1.3:-32983661 None:intergenic
TGATCATGTCTGCAACAGTC+TGG 0.461006 1.3:-32985213 None:intergenic
AATGTCTTGCGGATCTCCTC+CGG 0.477175 1.3:-32985247 None:intergenic
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1.3:-32983580 None:intergenic
CATGTCTGCAACAGTCTGGC+AGG 0.496105 1.3:-32985209 None:intergenic
TGATTTCTCACCTGAGGAAG+AGG 0.505723 1.3:+32985282 MS.gene84069:CDS
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1.3:-32983573 None:intergenic
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1.3:-32983574 None:intergenic
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1.3:-32983581 None:intergenic
CGAACTTCCTCCTCTTCCTC+AGG 0.533819 1.3:-32985292 None:intergenic
GACTGTTGCAGACATGATCA+AGG 0.534990 1.3:+32985216 MS.gene84069:CDS
CTGATCAACCTTGACGAACT+CGG 0.543997 1.3:-32983692 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 1.3:+32983665 MS.gene84069:CDS
AGCATCATTCAAATGCCCAT+TGG 0.546088 1.3:-32985324 None:intergenic
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1.3:+32985296 MS.gene84069:CDS
GGAAGAGGAGGAAGTTCGTA+GGG 0.553401 1.3:+32985297 MS.gene84069:CDS
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1.3:+32985309 MS.gene84069:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1.3:+32985308 MS.gene84069:CDS
GGGAAGAGGGATTCCACTGT+CGG 0.568035 1.3:-32983560 None:intergenic
GAAGATGATTGCGCCGACAG+TGG 0.570141 1.3:+32983547 MS.gene84069:CDS
TCTTGATGTTGAATGTCTTG+CGG 0.592623 1.3:-32985258 None:intergenic
TTGGGATTCCGAGTTCGTCA+AGG 0.598524 1.3:+32983684 MS.gene84069:CDS
ATCACTCTCAAGAGTTCCGA+CGG 0.604938 1.3:+32983463 MS.gene84069:CDS
GACCTTCGAGGTCGATGAAG+CGG 0.610768 1.3:+32983489 MS.gene84069:CDS
TTCCGACGGTGAGACCTTCG+AGG 0.613590 1.3:+32983477 MS.gene84069:CDS
AACCGCTTCATCGACCTCGA+AGG 0.623664 1.3:-32983491 None:intergenic
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1.3:+32983588 MS.gene84069:CDS
TTTCTCACCTGAGGAAGAGG+AGG 0.645844 1.3:+32985285 MS.gene84069:CDS
CAAGAATGATTTCTCACCTG+AGG 0.653595 1.3:+32985276 MS.gene84069:CDS
ACTGTTGCAGACATGATCAA+GGG 0.659883 1.3:+32985217 MS.gene84069:CDS
GACCTCGAAGGTCTCACCGT+CGG 0.662584 1.3:-32983479 None:intergenic
CATGATCAAGGGAAAGACAC+CGG 0.672420 1.3:+32985228 MS.gene84069:CDS
TGCTGAAGACAAACCTAACG+AGG 0.677963 1.3:+32983648 MS.gene84069:CDS
GATCAAGGGAAAGACACCGG+AGG 0.741825 1.3:+32985231 MS.gene84069:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAATTTAAATGGTTA+AGG + chr1.3:32985105-32985124 MS.gene84069:intron 10.0%
!! AAAAGAATAAGAATATCATT+TGG - chr1.3:32984211-32984230 None:intergenic 15.0%
!! TTTAATTCGTTTATTTGATT+TGG + chr1.3:32983757-32983776 MS.gene84069:intron 15.0%
!!! GGTTTATTCTTTTAAATTTT+AGG + chr1.3:32984864-32984883 MS.gene84069:intron 15.0%
!!! TACTTAGGTTTTTTAAATAA+TGG - chr1.3:32984943-32984962 None:intergenic 15.0%
!!! TTAATTCGTTTATTTGATTT+GGG + chr1.3:32983758-32983777 MS.gene84069:intron 15.0%
!! AAGAATATCATTTGGATATT+CGG - chr1.3:32984203-32984222 None:intergenic 20.0%
!! AATAAAGAACATATAAAGCA+TGG + chr1.3:32984703-32984722 MS.gene84069:intron 20.0%
!! TTCATAAATCAATTGATGTT+CGG - chr1.3:32984647-32984666 None:intergenic 20.0%
!! TTCTAATGTATTTGATTAAG+TGG + chr1.3:32984407-32984426 MS.gene84069:intron 20.0%
!!! ATGTTTATGTTTTGTTTTGT+TGG + chr1.3:32984269-32984288 MS.gene84069:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr1.3:32983874-32983893 MS.gene84069:intron 20.0%
!!! GGCAAAATATATATTTTTGA+AGG - chr1.3:32984093-32984112 None:intergenic 20.0%
!!! TAAGGCTGATTTTATATTAT+TGG + chr1.3:32985123-32985142 MS.gene84069:intron 20.0%
!!! TTGACATTGTTTTTCTTTTT+AGG + chr1.3:32985147-32985166 MS.gene84069:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr1.3:32983875-32983894 MS.gene84069:intron 20.0%
! AAAACCAAAAACCCTAATTT+AGG - chr1.3:32983808-32983827 None:intergenic 25.0%
! GTATGATATCATTGTTTGTA+TGG + chr1.3:32984593-32984612 MS.gene84069:intron 25.0%
! TCTTTCAAACCTTAAAGTTT+GGG - chr1.3:32984115-32984134 None:intergenic 25.0%
! TTCTTTCAAACCTTAAAGTT+TGG - chr1.3:32984116-32984135 None:intergenic 25.0%
! TTTAAAAAACCTAAGTAGTC+TGG + chr1.3:32984946-32984965 MS.gene84069:intron 25.0%
! TTTGTTCTACAACATTGTTA+TGG + chr1.3:32984041-32984060 MS.gene84069:intron 25.0%
!! ACATTGTCTCAATATTTTGT+TGG - chr1.3:32984755-32984774 None:intergenic 25.0%
!!! AAATTAGGGTTTTTGGTTTT+GGG + chr1.3:32983808-32983827 MS.gene84069:intron 25.0%
!!! AACTTTAAGGTTTGAAAGAA+AGG + chr1.3:32984116-32984135 MS.gene84069:intron 25.0%
!!! ACTTTAAGGTTTGAAAGAAA+GGG + chr1.3:32984117-32984136 MS.gene84069:intron 25.0%
!!! ATCTTGGTAAGTTTGTTTTA+GGG + chr1.3:32983733-32983752 MS.gene84069:intron 25.0%
!!! ATTAAGTGGTTCTAATTTTC+AGG + chr1.3:32984421-32984440 MS.gene84069:intron 25.0%
!!! ATTTGATTTGGGTTTTGTTT+TGG + chr1.3:32983769-32983788 MS.gene84069:intron 25.0%
!!! TAAATTAGGGTTTTTGGTTT+TGG + chr1.3:32983807-32983826 MS.gene84069:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + chr1.3:32983889-32983908 MS.gene84069:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr1.3:32983888-32983907 MS.gene84069:intron 25.0%
AAATATTCGTCGTGTTTGTT+TGG + chr1.3:32984312-32984331 MS.gene84069:intron 30.0%
AACAAACAAACAGCCATATT+TGG - chr1.3:32984893-32984912 None:intergenic 30.0%
AACAATAATCCAGACTACTT+AGG - chr1.3:32984958-32984977 None:intergenic 30.0%
ACAAACAAACAGCCATATTT+GGG - chr1.3:32984892-32984911 None:intergenic 30.0%
ACAACTTCTAGTAAATGTTG+TGG + chr1.3:32984842-32984861 MS.gene84069:intron 30.0%
ACGCGTTTACTGAAAATTAA+GGG + chr1.3:32984446-32984465 MS.gene84069:intron 30.0%
ATGAAATTAAACTAGCTGCA+AGG + chr1.3:32984662-32984681 MS.gene84069:intron 30.0%
CAACTTCTAGTAAATGTTGT+GGG + chr1.3:32984843-32984862 MS.gene84069:intron 30.0%
CTTTCAAACCTTAAAGTTTG+GGG - chr1.3:32984114-32984133 None:intergenic 30.0%
TACGCGTTTACTGAAAATTA+AGG + chr1.3:32984445-32984464 MS.gene84069:intron 30.0%
TGAAATTAAACTAGCTGCAA+GGG + chr1.3:32984663-32984682 MS.gene84069:intron 30.0%
TTGTTGAGGAAATTGAAGTT+TGG + chr1.3:32984973-32984992 MS.gene84069:intron 30.0%
! ATATTTTGCCCCAAACTTTA+AGG + chr1.3:32984103-32984122 MS.gene84069:intron 30.0%
! CAGGGATTTTATGTTTTCAT+TGG + chr1.3:32984147-32984166 MS.gene84069:intron 30.0%
!! AAATTTTAGGAGCCCAAATA+TGG + chr1.3:32984877-32984896 MS.gene84069:intron 30.0%
!! CATCTTGGTAAGTTTGTTTT+AGG + chr1.3:32983732-32983751 MS.gene84069:intron 30.0%
!! CTTTAAGGTTTGAAAGAAAG+GGG + chr1.3:32984118-32984137 MS.gene84069:intron 30.0%
!! GTGTTGCTGAAAATTGTTTT+TGG + chr1.3:32984914-32984933 MS.gene84069:intron 30.0%
!!! GGTTTTGTTTTGGAATGTTT+GGG + chr1.3:32983779-32983798 MS.gene84069:intron 30.0%
!!! GTTTTGTTTTGGAATGTTTG+GGG + chr1.3:32983780-32983799 MS.gene84069:intron 30.0%
!!! TTTTGTTTTGGAATGTTTGG+GGG + chr1.3:32983781-32983800 MS.gene84069:intron 30.0%
AAGCATGGACTTACTGTTAA+TGG + chr1.3:32984718-32984737 MS.gene84069:intron 35.0%
AATAGCATATAGCCCAATAG+AGG - chr1.3:32983979-32983998 None:intergenic 35.0%
ACAATTGTTTGTGCCTCTAT+TGG + chr1.3:32983963-32983982 MS.gene84069:intron 35.0%
AGAGAATTTGACATAGTGAG+TGG - chr1.3:32984242-32984261 None:intergenic 35.0%
AGTAGTCTGGATTATTGTTG+AGG + chr1.3:32984959-32984978 MS.gene84069:intron 35.0%
ATAAAAACAACACACTGCAG+TGG - chr1.3:32985089-32985108 None:intergenic 35.0%
CAATTGTTTGTGCCTCTATT+GGG + chr1.3:32983964-32983983 MS.gene84069:intron 35.0%
CACACAATCACTTAAAGAAG+TGG + chr1.3:32984384-32984403 MS.gene84069:intron 35.0%
CACACTATCAATTAGAAGTG+CGG + chr1.3:32984815-32984834 MS.gene84069:intron 35.0%
CCAGAGAATGTAAAATGCAA+TGG - chr1.3:32985058-32985077 None:intergenic 35.0%
GAAAGAAAGGGGAATATTCA+GGG + chr1.3:32984129-32984148 MS.gene84069:intron 35.0%
TCTTGATGTTGAATGTCTTG+CGG - chr1.3:32985261-32985280 None:intergenic 35.0%
TGAAAGAAAGGGGAATATTC+AGG + chr1.3:32984128-32984147 MS.gene84069:intron 35.0%
! CCATTGCATTTTACATTCTC+TGG + chr1.3:32985055-32985074 MS.gene84069:intron 35.0%
! TTGTACTATGTCACTTGTCA+AGG + chr1.3:32984784-32984803 MS.gene84069:intron 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr1.3:32983717-32983736 MS.gene84069:CDS 35.0%
!!! GGGTTTTGTTTTGGAATGTT+TGG + chr1.3:32983778-32983797 MS.gene84069:intron 35.0%
AAAAAGATAGCCACAAGAGC+AGG - chr1.3:32984024-32984043 None:intergenic 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr1.3:32985308-32985327 MS.gene84069:CDS 40.0%
ACTGTTGCAGACATGATCAA+GGG + chr1.3:32985217-32985236 MS.gene84069:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr1.3:32985309-32985328 MS.gene84069:CDS 40.0%
ATGTTTGGGGGTCCTAAATT+AGG + chr1.3:32983793-32983812 MS.gene84069:intron 40.0%
CAAGAATGATTTCTCACCTG+AGG + chr1.3:32985276-32985295 MS.gene84069:CDS 40.0%
CTTGAATATCAAGAGCTTGC+TGG + chr1.3:32985180-32985199 MS.gene84069:CDS 40.0%
TGTTTGGGGGTCCTAAATTA+GGG + chr1.3:32983794-32983813 MS.gene84069:intron 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - chr1.3:32983583-32983602 None:intergenic 40.0%
! GGGTCCTAAATTAGGGTTTT+TGG + chr1.3:32983801-32983820 MS.gene84069:intron 40.0%
! TATGTCACTTGTCAAGGTTC+TGG + chr1.3:32984790-32984809 MS.gene84069:intron 40.0%
AAACTAGCTGCAAGGGATCT+TGG + chr1.3:32984670-32984689 MS.gene84069:intron 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr1.3:32983665-32983684 MS.gene84069:CDS 45.0%
ATCACTCTCAAGAGTTCCGA+CGG + chr1.3:32983463-32983482 MS.gene84069:CDS 45.0%
CAACGTTACCAGCAAGATCT+TGG + chr1.3:32983582-32983601 MS.gene84069:CDS 45.0%
CATGATCAAGGGAAAGACAC+CGG + chr1.3:32985228-32985247 MS.gene84069:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr1.3:32983666-32983685 MS.gene84069:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - chr1.3:32983695-32983714 None:intergenic 45.0%
GACTGTTGCAGACATGATCA+AGG + chr1.3:32985216-32985235 MS.gene84069:CDS 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr1.3:32983664-32983683 None:intergenic 45.0%
TGATCATGTCTGCAACAGTC+TGG - chr1.3:32985216-32985235 None:intergenic 45.0%
TGATTTCTCACCTGAGGAAG+AGG + chr1.3:32985282-32985301 MS.gene84069:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr1.3:32983648-32983667 MS.gene84069:CDS 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + chr1.3:32984011-32984030 MS.gene84069:intron 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - chr1.3:32983584-32983603 None:intergenic 45.0%
!!! TTGTTTTTATTTAATTTAAA+TGG + chr1.3:32985099-32985118 MS.gene84069:intron 5.0%
AATGTCTTGCGGATCTCCTC+CGG - chr1.3:32985250-32985269 None:intergenic 50.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr1.3:32985296-32985315 MS.gene84069:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr1.3:32985297-32985316 MS.gene84069:CDS 50.0%
TACCAGCAAGATCTTGGCGA+AGG + chr1.3:32983588-32983607 MS.gene84069:CDS 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + chr1.3:32983684-32983703 MS.gene84069:CDS 50.0%
TTTCTCACCTGAGGAAGAGG+AGG + chr1.3:32985285-32985304 MS.gene84069:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + chr1.3:32983693-32983712 MS.gene84069:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - chr1.3:32983576-32983595 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - chr1.3:32983577-32983596 None:intergenic 50.0%
AACCGCTTCATCGACCTCGA+AGG - chr1.3:32983494-32983513 None:intergenic 55.0%
CACCTTCGCCAAGATCTTGC+TGG - chr1.3:32983593-32983612 None:intergenic 55.0%
CATGTCTGCAACAGTCTGGC+AGG - chr1.3:32985212-32985231 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+AGG - chr1.3:32985295-32985314 None:intergenic 55.0%
GACCTTCGAGGTCGATGAAG+CGG + chr1.3:32983489-32983508 MS.gene84069:CDS 55.0%
GATCAAGGGAAAGACACCGG+AGG + chr1.3:32985231-32985250 MS.gene84069:CDS 55.0%
GGGAAGAGGGATTCCACTGT+CGG - chr1.3:32983563-32983582 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + chr1.3:32983498-32983517 MS.gene84069:CDS 55.0%
! GAAGATGATTGCGCCGACAG+TGG + chr1.3:32983547-32983566 MS.gene84069:CDS 55.0%
GACCTCGAAGGTCTCACCGT+CGG - chr1.3:32983482-32983501 None:intergenic 60.0%
TTCCGACGGTGAGACCTTCG+AGG + chr1.3:32983477-32983496 MS.gene84069:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 32983445 32985342 32983445 ID=MS.gene84069
chr1.3 mRNA 32983445 32985342 32983445 ID=MS.gene84069.t1;Parent=MS.gene84069
chr1.3 exon 32983445 32983738 32983445 ID=MS.gene84069.t1.exon1;Parent=MS.gene84069.t1
chr1.3 CDS 32983445 32983738 32983445 ID=cds.MS.gene84069.t1;Parent=MS.gene84069.t1
chr1.3 exon 32985169 32985342 32985169 ID=MS.gene84069.t1.exon2;Parent=MS.gene84069.t1
chr1.3 CDS 32985169 32985342 32985169 ID=cds.MS.gene84069.t1;Parent=MS.gene84069.t1
Gene Sequence

>MS.gene84069

ATGTCTTCAACAAGAAAGATCACTCTCAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGATGATTGCGCCGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTCAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGTAAGTTTGTTTTAGGGTTTTAATTCGTTTATTTGATTTGGGTTTTGTTTTGGAATGTTTGGGGGTCCTAAATTAGGGTTTTTGGTTTTGGGAATTGATTGAGCTATTTTTTATTTGATCGTTGAAGTTTTTTCAATTTCAATTTGTCTTTTGTTTGGGTTGAATTTAATGGGTTATCAGTAGTAGTTGTTTGAATTGTGATTGTTGTTGTTGTTGATGCTGTTACAATTGTTTGTGCCTCTATTGGGCTATATGCTATTGTTTTGATGTTGTGTTGAATTGCCTGCTCTTGTGGCTATCTTTTTGTTCTACAACATTGTTATGGTTGATGCTGCTATGCTATTGTGAAATCCTTCAAAAATATATATTTTGCCCCAAACTTTAAGGTTTGAAAGAAAGGGGAATATTCAGGGATTTTATGTTTTCATTGGATTGTTATGTGAGAAACTGTATAGTCAAATCCGAATATCCAAATGATATTCTTATTCTTTTTACATTAACCACTCACTATGTCAAATTCTCTGTTTTGTATGTTTATGTTTTGTTTTGTTGGCTTATCTTTTCATTCTGTTGAAATATTCGTCGTGTTTGTTTGGATAACTTGCACAATGCAATGCTATTGTGTTTATTATTCAGTGTTTGTATCACACAATCACTTAAAGAAGTGGTTCTAATGTATTTGATTAAGTGGTTCTAATTTTCAGGCTACGCGTTTACTGAAAATTAAGGGCTTGTTTTTAGAAGTTTCTGTTTGATATATCATATTGTTTTCGCTGTGTTTTACGAAACAATTGAAACAAGTTTTAAGCAAAAATATCATATTTCTTCAATGTTTTATAGAACTTTAGAAATTAGTATGATATCATTGTTTGTATGGAACTATAGTGATTCTTTTTAAGACTAAACCGAACATCAATTGATTTATGAAATTAAACTAGCTGCAAGGGATCTTGGTTTTTTTATGAATAAAGAACATATAAAGCATGGACTTACTGTTAATGGACATGTCGTCACCAACAAAATATTGAGACAATGTCATAATTAATTGTACTATGTCACTTGTCAAGGTTCTGGATCACACTATCAATTAGAAGTGCGGTGCTACAACTTCTAGTAAATGTTGTGGGTTTATTCTTTTAAATTTTAGGAGCCCAAATATGGCTGTTTGTTTGTTTGTGTTGCTGAAAATTGTTTTTGGATTCCATTATTTAAAAAACCTAAGTAGTCTGGATTATTGTTGAGGAAATTGAAGTTTGGATTCTGAATAATTTTATAATCAATTTTGTTGTTTCAACTCACAAAAACGTCTCTGATTGCCATTGCATTTTACATTCTCTGGTGTTTTCTCCACTGCAGTGTGTTGTTTTTATTTAATTTAAATGGTTAAGGCTGATTTTATATTATTGGTTTGACATTGTTTTTCTTTTTAGGCTGCTAATTACTTGAATATCAAGAGCTTGCTGGATCTTACCTGCCAGACTGTTGCAGACATGATCAAGGGAAAGACACCGGAGGAGATCCGCAAGACATTCAACATCAAGAATGATTTCTCACCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA
Protein sequence

>MS.gene84069.t1

MSSTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE