Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84834.t1 | AET01997.2 | 94.7 | 114 | 6 | 0 | 6 | 119 | 29 | 142 | 2.60E-52 | 214.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84834.t1 | P40934 | 58.3 | 108 | 42 | 2 | 6 | 113 | 29 | 133 | 2.0e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84834.t1 | G7LAT8 | 94.7 | 114 | 6 | 0 | 6 | 119 | 29 | 142 | 1.9e-52 | 214.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene84834 | 0.804969 | 1.67E-49 | -1.69E-46 |
| MS.gene051019 | MS.gene84834 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene84834 | 0.841045 | 6.03E-58 | -1.69E-46 |
| MS.gene052793 | MS.gene84834 | 0.808988 | 2.36E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene84834 | 0.805131 | 1.55E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene84834 | 0.83912 | 1.92E-57 | -1.69E-46 |
| MS.gene056699 | MS.gene84834 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene84834 | 0.85764 | 1.42E-62 | -1.69E-46 |
| MS.gene058159 | MS.gene84834 | 0.827182 | 1.80E-54 | -1.69E-46 |
| MS.gene058279 | MS.gene84834 | 0.800482 | 1.41E-48 | -1.69E-46 |
| MS.gene058592 | MS.gene84834 | 0.833069 | 6.59E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene84834 | 0.815135 | 1.08E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene84834 | -0.840793 | 7.02E-58 | -1.69E-46 |
| MS.gene059901 | MS.gene84834 | -0.809064 | 2.28E-50 | -1.69E-46 |
| MS.gene060512 | MS.gene84834 | 0.877666 | 5.23E-69 | -1.69E-46 |
| MS.gene060935 | MS.gene84834 | 0.807777 | 4.28E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene84834 | 0.816608 | 5.07E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene84834 | 0.839628 | 1.41E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene84834 | 0.825687 | 4.09E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84834.t1 | MTR_8g027080 | 94.737 | 114 | 6 | 0 | 6 | 119 | 29 | 142 | 2.85e-77 | 226 |
| MS.gene84834.t1 | MTR_8g027080 | 94.737 | 114 | 6 | 0 | 6 | 119 | 29 | 142 | 3.12e-77 | 224 |
| MS.gene84834.t1 | MTR_8g027080 | 94.737 | 114 | 6 | 0 | 6 | 119 | 29 | 142 | 3.22e-77 | 224 |
| MS.gene84834.t1 | MTR_8g027080 | 94.737 | 114 | 6 | 0 | 6 | 119 | 29 | 142 | 3.29e-77 | 224 |
| MS.gene84834.t1 | MTR_3g092095 | 58.407 | 113 | 44 | 1 | 1 | 113 | 24 | 133 | 5.26e-43 | 137 |
| MS.gene84834.t1 | MTR_7g117990 | 59.649 | 114 | 45 | 1 | 6 | 119 | 30 | 142 | 2.33e-38 | 126 |
| MS.gene84834.t1 | MTR_3g092095 | 58.000 | 100 | 39 | 1 | 14 | 113 | 1 | 97 | 3.66e-37 | 122 |
| MS.gene84834.t1 | MTR_4g022350 | 51.818 | 110 | 50 | 2 | 6 | 115 | 42 | 148 | 5.98e-37 | 122 |
| MS.gene84834.t1 | MTR_4g022350 | 51.818 | 110 | 50 | 2 | 6 | 115 | 29 | 135 | 6.68e-37 | 122 |
| MS.gene84834.t1 | MTR_5g045630 | 66.129 | 62 | 20 | 1 | 6 | 67 | 29 | 89 | 1.55e-24 | 90.9 |
| MS.gene84834.t1 | MTR_5g045630 | 63.492 | 63 | 22 | 1 | 6 | 68 | 15 | 76 | 3.44e-24 | 89.4 |
| MS.gene84834.t1 | MTR_3g102780 | 34.211 | 114 | 64 | 2 | 6 | 113 | 107 | 215 | 1.90e-18 | 77.4 |
| MS.gene84834.t1 | MTR_5g059820 | 44.615 | 65 | 33 | 2 | 7 | 69 | 542 | 605 | 5.47e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84834.t1 | AT5G53560 | 53.982 | 113 | 49 | 2 | 1 | 113 | 24 | 133 | 8.53e-41 | 132 |
| MS.gene84834.t1 | AT5G48810 | 57.944 | 107 | 44 | 1 | 6 | 112 | 29 | 134 | 1.82e-40 | 131 |
| MS.gene84834.t1 | AT2G32720 | 57.944 | 107 | 42 | 2 | 6 | 112 | 29 | 132 | 3.93e-38 | 125 |
| MS.gene84834.t1 | AT2G32720 | 56.481 | 108 | 44 | 2 | 5 | 112 | 28 | 132 | 1.26e-37 | 124 |
| MS.gene84834.t1 | AT2G46650 | 48.624 | 109 | 53 | 2 | 6 | 113 | 26 | 132 | 2.85e-24 | 90.5 |
| MS.gene84834.t1 | AT1G26340 | 51.316 | 76 | 31 | 1 | 6 | 75 | 29 | 104 | 3.52e-23 | 87.8 |
Find 25 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGGTGCCATTGCTGATAT+TGG | 0.277424 | 8.4:+69843280 | MS.gene84834:CDS |
| GCATTTGCTCTTCAGTACTA+TGG | 0.296249 | 8.4:+69843308 | MS.gene84834:CDS |
| ATTCATTACTTAAGATTCAT+TGG | 0.334499 | 8.4:-69843345 | None:intergenic |
| AGAAGATTGATTGCTGCTTA+TGG | 0.334533 | 8.4:-69843231 | None:intergenic |
| ATAAGCAGCAATCAATCTTC+TGG | 0.400727 | 8.4:+69843233 | MS.gene84834:CDS |
| TGATGGAAAAGTACTATGTC+GGG | 0.401001 | 8.4:+69843141 | MS.gene84834:CDS |
| CTTATGGTAGATGCTTGAAT+TGG | 0.417094 | 8.4:-69843215 | None:intergenic |
| GATGCTTGAATTGGTGCTGT+TGG | 0.425349 | 8.4:-69843206 | None:intergenic |
| GGATTGTTCTTAGCTGCTGC+TGG | 0.435494 | 8.4:-69843185 | None:intergenic |
| CTGGTGCCATTGCTGATATT+GGG | 0.444522 | 8.4:+69843281 | MS.gene84834:CDS |
| GTGGCCAACATCTTCAAAAT+CGG | 0.455103 | 8.4:-69843099 | None:intergenic |
| GAGGCTTTACTTTCTGCTAC+AGG | 0.473709 | 8.4:+69842594 | MS.gene84834:CDS |
| GTTGAAGTTCTTGCAGTACC+TGG | 0.488377 | 8.4:+69843262 | MS.gene84834:CDS |
| AGTAAAGCCTCATCACCTCC+TGG | 0.518266 | 8.4:-69842582 | None:intergenic |
| TGACTCGGCAACAGAGATGA+TGG | 0.533371 | 8.4:+69843124 | MS.gene84834:CDS |
| ATGATGGAAAAGTACTATGT+CGG | 0.538408 | 8.4:+69843140 | MS.gene84834:CDS |
| CCAATATCAGCAATGGCACC+AGG | 0.539402 | 8.4:-69843280 | None:intergenic |
| AGCTGCTGCTGGAAGAGTGT+TGG | 0.552849 | 8.4:-69843174 | None:intergenic |
| AGATGTTGGCCACAGTGACT+CGG | 0.590642 | 8.4:+69843109 | MS.gene84834:CDS |
| TGATCATCCAGGAGGTGATG+AGG | 0.606684 | 8.4:+69842575 | MS.gene84834:CDS |
| GCAGATCCCAATATCAGCAA+TGG | 0.611023 | 8.4:-69843287 | None:intergenic |
| GCCAACATCTTCAAAATCGG+TGG | 0.624406 | 8.4:-69843096 | None:intergenic |
| GATGGAAAAGTACTATGTCG+GGG | 0.689368 | 8.4:+69843142 | MS.gene84834:CDS |
| TCTCTGTTGCCGAGTCACTG+TGG | 0.717695 | 8.4:-69843118 | None:intergenic |
| GGAAAAGTACTATGTCGGGG+AGG | 0.724893 | 8.4:+69843145 | MS.gene84834:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATGAAATTTATATTT+AGG | + | chr8.4:69842301-69842320 | MS.gene84834:intron | 10.0% |
| !! | TTCTTAAAAGAAATAATTAG+TGG | - | chr8.4:69841960-69841979 | None:intergenic | 15.0% |
| !!! | AGAGATTTTAAAAAGTAAAT+AGG | - | chr8.4:69841740-69841759 | None:intergenic | 15.0% |
| !!! | TGTAACTTTATTTTGATTAA+TGG | + | chr8.4:69841608-69841627 | MS.gene84834:intron | 15.0% |
| !!! | TTTGTACTTTTATTAATAGT+AGG | + | chr8.4:69842476-69842495 | MS.gene84834:intron | 15.0% |
| !! | GTATTCCTATGTTTATTATA+GGG | - | chr8.4:69842394-69842413 | None:intergenic | 20.0% |
| !! | TACTTTAAACAAACACATTT+CGG | - | chr8.4:69842286-69842305 | None:intergenic | 20.0% |
| !! | TATTTATTAGTAGCAATGTA+GGG | - | chr8.4:69841917-69841936 | None:intergenic | 20.0% |
| !! | TGTATTCCTATGTTTATTAT+AGG | - | chr8.4:69842395-69842414 | None:intergenic | 20.0% |
| !! | TTATTTATTAGTAGCAATGT+AGG | - | chr8.4:69841918-69841937 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTTATTATTCTCA+GGG | + | chr8.4:69842881-69842900 | MS.gene84834:intron | 20.0% |
| !!! | AGTTTATCTTTAAAGAAAGA+AGG | + | chr8.4:69842833-69842852 | MS.gene84834:intron | 20.0% |
| !!! | ATTTCTCTCTAAGATTAAAA+TGG | - | chr8.4:69842167-69842186 | None:intergenic | 20.0% |
| !!! | TACTTTTTAAAATCTCTTAG+AGG | + | chr8.4:69841743-69841762 | MS.gene84834:intron | 20.0% |
| !!! | TATTTTATATTACTCAGTGT+GGG | + | chr8.4:69841865-69841884 | MS.gene84834:intron | 20.0% |
| !!! | TTATTTTTCTCAGACTAAAT+TGG | - | chr8.4:69842712-69842731 | None:intergenic | 20.0% |
| ! | AAAACTATTACCAAAGTCAT+AGG | + | chr8.4:69842986-69843005 | MS.gene84834:intron | 25.0% |
| ! | ATAAAAACAACTCTTTGTCT+CGG | - | chr8.4:69842873-69842892 | None:intergenic | 25.0% |
| ! | GAGTAATATAAAATACTTCG+TGG | - | chr8.4:69841860-69841879 | None:intergenic | 25.0% |
| ! | GTATTTATCATGTTACTGAT+GGG | - | chr8.4:69842087-69842106 | None:intergenic | 25.0% |
| ! | TGATGCATTTGTAATATGAT+CGG | + | chr8.4:69841565-69841584 | MS.gene84834:intron | 25.0% |
| ! | TTATATGACATAAGCTACAT+TGG | + | chr8.4:69842257-69842276 | MS.gene84834:intron | 25.0% |
| !! | AGTTTTTCTCATGACTAAAA+TGG | - | chr8.4:69842682-69842701 | None:intergenic | 25.0% |
| !! | GTATTTTATATTACTCAGTG+TGG | + | chr8.4:69841864-69841883 | MS.gene84834:intron | 25.0% |
| !! | GTTTTTCTCATGACTAAAAT+GGG | - | chr8.4:69842681-69842700 | None:intergenic | 25.0% |
| !!! | GAGTTGTTTTTATTATTCTC+AGG | + | chr8.4:69842880-69842899 | MS.gene84834:intron | 25.0% |
| !!! | TTTTTAAAATCTCTTAGAGG+AGG | + | chr8.4:69841746-69841765 | MS.gene84834:intron | 25.0% |
| AATACGATCTTTCATTTGAG+TGG | + | chr8.4:69842102-69842121 | MS.gene84834:intron | 30.0% | |
| ATCTTGCATTTCATTGTAAC+AGG | + | chr8.4:69842527-69842546 | MS.gene84834:intron | 30.0% | |
| CATTTGTAATATGATCGGTT+TGG | + | chr8.4:69841570-69841589 | MS.gene84834:intron | 30.0% | |
| CGTATTTATCATGTTACTGA+TGG | - | chr8.4:69842088-69842107 | None:intergenic | 30.0% | |
| GTAATTTACTCTGAACACTT+GGG | + | chr8.4:69841774-69841793 | MS.gene84834:intron | 30.0% | |
| GTTACAATGAAATGCAAGAT+AGG | - | chr8.4:69842527-69842546 | None:intergenic | 30.0% | |
| TAATTTACTCTGAACACTTG+GGG | + | chr8.4:69841775-69841794 | MS.gene84834:intron | 30.0% | |
| TAGCACCCTATAATAAACAT+AGG | + | chr8.4:69842386-69842405 | MS.gene84834:intron | 30.0% | |
| TGTAATTTACTCTGAACACT+TGG | + | chr8.4:69841773-69841792 | MS.gene84834:intron | 30.0% | |
| TTTCTTGATACCTATGACTT+TGG | - | chr8.4:69842999-69843018 | None:intergenic | 30.0% | |
| ! | ATATGATGTTACCCCATTTT+TGG | + | chr8.4:69842551-69842570 | MS.gene84834:CDS | 30.0% |
| ! | ATCTTTAAAGAAAGAAGGTG+GGG | + | chr8.4:69842797-69842816 | MS.gene84834:intron | 30.0% |
| ! | CATCTTTAAAGAAAGAAGGT+GGG | + | chr8.4:69842796-69842815 | MS.gene84834:intron | 30.0% |
| ! | GAACTCATCATTGGTTATTT+CGG | + | chr8.4:69842189-69842208 | MS.gene84834:intron | 30.0% |
| ! | TACAGGTAATTAGTTTCTCT+CGG | + | chr8.4:69842611-69842630 | MS.gene84834:intron | 30.0% |
| !! | ATGATGGAAAAGTACTATGT+CGG | + | chr8.4:69843140-69843159 | MS.gene84834:CDS | 30.0% |
| !! | TTCTTTTAAGAACTAGCATC+AGG | + | chr8.4:69841968-69841987 | MS.gene84834:intron | 30.0% |
| !!! | GTAGTTTTTTTTCAGTGACT+CGG | + | chr8.4:69842919-69842938 | MS.gene84834:intron | 30.0% |
| ACACATTCACATGAATGAAC+AGG | - | chr8.4:69842427-69842446 | None:intergenic | 35.0% | |
| ACATTCGACTAACAATCTTC+TGG | + | chr8.4:69843049-69843068 | MS.gene84834:intron | 35.0% | |
| ATAAGCAGCAATCAATCTTC+TGG | + | chr8.4:69843233-69843252 | MS.gene84834:CDS | 35.0% | |
| CTGGATGATCATCCAAAAAT+GGG | - | chr8.4:69842566-69842585 | None:intergenic | 35.0% | |
| CTTATGGTAGATGCTTGAAT+TGG | - | chr8.4:69843218-69843237 | None:intergenic | 35.0% | |
| GAGAAATACGAACTCATCAT+TGG | + | chr8.4:69842180-69842199 | MS.gene84834:intron | 35.0% | |
| TAATCCGAGCGAAAAATCAA+CGG | + | chr8.4:69842737-69842756 | MS.gene84834:intron | 35.0% | |
| TATTTAGGAATAACTTCCCC+AGG | + | chr8.4:69842316-69842335 | MS.gene84834:intron | 35.0% | |
| TGGATGATCATCCAAAAATG+GGG | - | chr8.4:69842565-69842584 | None:intergenic | 35.0% | |
| ! | AATCTTCTGGTGTTTTACAC+AGG | + | chr8.4:69843062-69843081 | MS.gene84834:intron | 35.0% |
| ! | AATTCCCATCATTGTTTTCC+TGG | - | chr8.4:69842337-69842356 | None:intergenic | 35.0% |
| ! | AGAAGATTGATTGCTGCTTA+TGG | - | chr8.4:69843234-69843253 | None:intergenic | 35.0% |
| ! | ATCTTCTGGTGTTTTACACA+GGG | + | chr8.4:69843063-69843082 | MS.gene84834:intron | 35.0% |
| ! | ATTCCCATCATTGTTTTCCT+GGG | - | chr8.4:69842336-69842355 | None:intergenic | 35.0% |
| ! | CTCGCATCTTTAAAGAAAGA+AGG | + | chr8.4:69842792-69842811 | MS.gene84834:intron | 35.0% |
| ! | CTTCTTTCTTTAAAGATGCG+AGG | - | chr8.4:69842794-69842813 | None:intergenic | 35.0% |
| ! | GCATCTTTAAAGAAAGAAGG+TGG | + | chr8.4:69842795-69842814 | MS.gene84834:intron | 35.0% |
| !! | TGATGGAAAAGTACTATGTC+GGG | + | chr8.4:69843141-69843160 | MS.gene84834:CDS | 35.0% |
| !!! | TTTTTTTTCAGTGACTCGGT+TGG | + | chr8.4:69842923-69842942 | MS.gene84834:intron | 35.0% |
| AATGGTGTGTGTGCATAATG+AGG | + | chr8.4:69841626-69841645 | MS.gene84834:intron | 40.0% | |
| ATGGTGTGTGTGCATAATGA+GGG | + | chr8.4:69841627-69841646 | MS.gene84834:intron | 40.0% | |
| CCTGGATGATCATCCAAAAA+TGG | - | chr8.4:69842567-69842586 | None:intergenic | 40.0% | |
| GCATTTGCTCTTCAGTACTA+TGG | + | chr8.4:69843308-69843327 | MS.gene84834:CDS | 40.0% | |
| GGTGCTAGAAAATTCACTCT+CGG | - | chr8.4:69842373-69842392 | None:intergenic | 40.0% | |
| GTGGCCAACATCTTCAAAAT+CGG | - | chr8.4:69843102-69843121 | None:intergenic | 40.0% | |
| TACTTCGTGGCATATTTCAG+TGG | - | chr8.4:69841847-69841866 | None:intergenic | 40.0% | |
| TATTACTCAGTGTGGGACTT+TGG | + | chr8.4:69841872-69841891 | MS.gene84834:intron | 40.0% | |
| TATTTCGGCAAACTTCAGAC+AGG | + | chr8.4:69842204-69842223 | MS.gene84834:intron | 40.0% | |
| TTAGTGGTAGAACTGCTTAG+TGG | - | chr8.4:69841944-69841963 | None:intergenic | 40.0% | |
| TTCAGACAGGTCATCATATC+TGG | + | chr8.4:69842217-69842236 | MS.gene84834:intron | 40.0% | |
| TTCCCCAGGAAAACAATGAT+GGG | + | chr8.4:69842330-69842349 | MS.gene84834:intron | 40.0% | |
| ! | CCTAGACAGCACACTTTTAA+GGG | - | chr8.4:69841811-69841830 | None:intergenic | 40.0% |
| ! | CCTTAAAAGTGTGCTGTCTA+GGG | + | chr8.4:69841809-69841828 | MS.gene84834:intron | 40.0% |
| ! | CTTAAAAGTGTGCTGTCTAG+GGG | + | chr8.4:69841810-69841829 | MS.gene84834:intron | 40.0% |
| ! | GGTAATTAGTTTCTCTCGGT+TGG | + | chr8.4:69842615-69842634 | MS.gene84834:intron | 40.0% |
| ! | TTAAAAGTGTGCTGTCTAGG+GGG | + | chr8.4:69841811-69841830 | MS.gene84834:intron | 40.0% |
| ! | TTCCCATCATTGTTTTCCTG+GGG | - | chr8.4:69842335-69842354 | None:intergenic | 40.0% |
| ! | TTTTTGGATGATCATCCAGG+AGG | + | chr8.4:69842567-69842586 | MS.gene84834:CDS | 40.0% |
| !! | CCATTTTTGGATGATCATCC+AGG | + | chr8.4:69842564-69842583 | MS.gene84834:CDS | 40.0% |
| !! | GATGGAAAAGTACTATGTCG+GGG | + | chr8.4:69843142-69843161 | MS.gene84834:CDS | 40.0% |
| !!! | ACCACCGATTTTGAAGATGT+TGG | + | chr8.4:69843095-69843114 | MS.gene84834:CDS | 40.0% |
| AGATGCGAGGCTAAGTTGTT+CGG | - | chr8.4:69842781-69842800 | None:intergenic | 45.0% | |
| CAACTGTGCACCTTCCAAAT+GGG | + | chr8.4:69842019-69842038 | MS.gene84834:intron | 45.0% | |
| CTTCCCCAGGAAAACAATGA+TGG | + | chr8.4:69842329-69842348 | MS.gene84834:intron | 45.0% | |
| GAGGCTTTACTTTCTGCTAC+AGG | + | chr8.4:69842594-69842613 | MS.gene84834:CDS | 45.0% | |
| GCAGATCCCAATATCAGCAA+TGG | - | chr8.4:69843290-69843309 | None:intergenic | 45.0% | |
| GCCAACATCTTCAAAATCGG+TGG | - | chr8.4:69843099-69843118 | None:intergenic | 45.0% | |
| GTTGAAGTTCTTGCAGTACC+TGG | + | chr8.4:69843262-69843281 | MS.gene84834:CDS | 45.0% | |
| TAGTAGCAATGTAGGGACGT+GGG | - | chr8.4:69841910-69841929 | None:intergenic | 45.0% | |
| TTACTCTGAACACTTGGGGA+GGG | + | chr8.4:69841779-69841798 | MS.gene84834:intron | 45.0% | |
| TTAGTAGCAATGTAGGGACG+TGG | - | chr8.4:69841911-69841930 | None:intergenic | 45.0% | |
| TTTACTCTGAACACTTGGGG+AGG | + | chr8.4:69841778-69841797 | MS.gene84834:intron | 45.0% | |
| ! | CCCTAGACAGCACACTTTTA+AGG | - | chr8.4:69841812-69841831 | None:intergenic | 45.0% |
| ! | CCCTTAAAAGTGTGCTGTCT+AGG | + | chr8.4:69841808-69841827 | MS.gene84834:intron | 45.0% |
| ! | TCTGGTGTTTTACACAGGGA+AGG | + | chr8.4:69843067-69843086 | MS.gene84834:intron | 45.0% |
| !! | AGACAGCACACTTTTAAGGG+AGG | - | chr8.4:69841808-69841827 | None:intergenic | 45.0% |
| !! | CTGGCTGGTTTATAGACCAA+CGG | + | chr8.4:69842046-69842065 | MS.gene84834:intron | 45.0% |
| !! | CTGGTGCCATTGCTGATATT+GGG | + | chr8.4:69843281-69843300 | MS.gene84834:CDS | 45.0% |
| !! | GACAGCACACTTTTAAGGGA+GGG | - | chr8.4:69841807-69841826 | None:intergenic | 45.0% |
| !! | GATGCTTGAATTGGTGCTGT+TGG | - | chr8.4:69843209-69843228 | None:intergenic | 45.0% |
| !!! | GTCTCCGTTGATTTTTCGCT+CGG | - | chr8.4:69842744-69842763 | None:intergenic | 45.0% |
| AACCAGCCAGTCTACCCATT+TGG | - | chr8.4:69842036-69842055 | None:intergenic | 50.0% | |
| AGATGTTGGCCACAGTGACT+CGG | + | chr8.4:69843109-69843128 | MS.gene84834:CDS | 50.0% | |
| AGCCAGTCTACCCATTTGGA+AGG | - | chr8.4:69842032-69842051 | None:intergenic | 50.0% | |
| AGTAAAGCCTCATCACCTCC+TGG | - | chr8.4:69842585-69842604 | None:intergenic | 50.0% | |
| CACCTTCCAAATGGGTAGAC+TGG | + | chr8.4:69842027-69842046 | MS.gene84834:intron | 50.0% | |
| CCAACTGTGCACCTTCCAAA+TGG | + | chr8.4:69842018-69842037 | MS.gene84834:intron | 50.0% | |
| CCAATATCAGCAATGGCACC+AGG | - | chr8.4:69843283-69843302 | None:intergenic | 50.0% | |
| CGTGGCATATTTCAGTGGCT+TGG | - | chr8.4:69841842-69841861 | None:intergenic | 50.0% | |
| GATGCGAGGCTAAGTTGTTC+GGG | - | chr8.4:69842780-69842799 | None:intergenic | 50.0% | |
| GGATTGTTCTTAGCTGCTGC+TGG | - | chr8.4:69843188-69843207 | None:intergenic | 50.0% | |
| TGATCATCCAGGAGGTGATG+AGG | + | chr8.4:69842575-69842594 | MS.gene84834:CDS | 50.0% | |
| TGTGGGACTTTGGCACATCA+TGG | + | chr8.4:69841882-69841901 | MS.gene84834:intron | 50.0% | |
| TGTTACTGATGGGACTGACG+AGG | - | chr8.4:69842077-69842096 | None:intergenic | 50.0% | |
| TTCCAAATGGGTAGACTGGC+TGG | + | chr8.4:69842031-69842050 | MS.gene84834:intron | 50.0% | |
| ! | CCATTTGGAAGGTGCACAGT+TGG | - | chr8.4:69842021-69842040 | None:intergenic | 50.0% |
| ! | TGACTCGGCAACAGAGATGA+TGG | + | chr8.4:69843124-69843143 | MS.gene84834:CDS | 50.0% |
| !! | CCTGGTGCCATTGCTGATAT+TGG | + | chr8.4:69843280-69843299 | MS.gene84834:CDS | 50.0% |
| !! | GGAAAAGTACTATGTCGGGG+AGG | + | chr8.4:69843145-69843164 | MS.gene84834:CDS | 50.0% |
| AAGGTGCACAGTTGGCGACA+TGG | - | chr8.4:69842013-69842032 | None:intergenic | 55.0% | |
| AGGTGCACAGTTGGCGACAT+GGG | - | chr8.4:69842012-69842031 | None:intergenic | 55.0% | |
| TCTCTGTTGCCGAGTCACTG+TGG | - | chr8.4:69843121-69843140 | None:intergenic | 55.0% | |
| TTGGCGACATGGGAATCAGC+AGG | - | chr8.4:69842002-69842021 | None:intergenic | 55.0% | |
| ! | AGCTGCTGCTGGAAGAGTGT+TGG | - | chr8.4:69843177-69843196 | None:intergenic | 55.0% |
| GACTGACGAGGCAGATCCGT+TGG | - | chr8.4:69842065-69842084 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 69841544 | 69843358 | 69841544 | ID=MS.gene84834 |
| chr8.4 | mRNA | 69841544 | 69843358 | 69841544 | ID=MS.gene84834.t1;Parent=MS.gene84834 |
| chr8.4 | exon | 69841544 | 69841561 | 69841544 | ID=MS.gene84834.t1.exon1;Parent=MS.gene84834.t1 |
| chr8.4 | CDS | 69841544 | 69841561 | 69841544 | ID=cds.MS.gene84834.t1;Parent=MS.gene84834.t1 |
| chr8.4 | exon | 69842549 | 69842615 | 69842549 | ID=MS.gene84834.t1.exon2;Parent=MS.gene84834.t1 |
| chr8.4 | CDS | 69842549 | 69842615 | 69842549 | ID=cds.MS.gene84834.t1;Parent=MS.gene84834.t1 |
| chr8.4 | exon | 69843084 | 69843358 | 69843084 | ID=MS.gene84834.t1.exon3;Parent=MS.gene84834.t1 |
| chr8.4 | CDS | 69843084 | 69843358 | 69843084 | ID=cds.MS.gene84834.t1;Parent=MS.gene84834.t1 |
| Gene Sequence |
| Protein sequence |
