Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85520.t1 | XP_003598625.1 | 96.1 | 284 | 10 | 1 | 1 | 284 | 1 | 283 | 2.20E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85520.t1 | Q9LH89 | 45.5 | 121 | 56 | 2 | 116 | 226 | 251 | 371 | 2.7e-24 | 114.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85520.t1 | G7IYV7 | 96.1 | 284 | 10 | 1 | 1 | 284 | 1 | 283 | 1.6e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene85520 | 0.810534 | 1.10E-50 | -1.69E-46 |
| MS.gene04991 | MS.gene85520 | -0.838342 | 3.04E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene85520 | -0.81274 | 3.64E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene85520 | 0.813504 | 2.48E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene85520 | 0.806922 | 6.50E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene85520 | 0.817769 | 2.78E-52 | -1.69E-46 |
| MS.gene055225 | MS.gene85520 | 0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene85520 | 0.84854 | 5.74E-60 | -1.69E-46 |
| MS.gene057194 | MS.gene85520 | 0.801587 | 8.39E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene85520 | 0.85899 | 5.64E-63 | -1.69E-46 |
| MS.gene058081 | MS.gene85520 | 0.822683 | 2.08E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene85520 | 0.810005 | 1.43E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene85520 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene85520 | 0.818956 | 1.50E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene85520 | 0.833382 | 5.51E-56 | -1.69E-46 |
| MS.gene060852 | MS.gene85520 | 0.833477 | 5.22E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85520.t1 | MTR_3g017490 | 96.479 | 284 | 9 | 1 | 1 | 284 | 1 | 283 | 0.0 | 557 |
| MS.gene85520.t1 | MTR_8g038440 | 51.880 | 266 | 104 | 3 | 2 | 264 | 13 | 257 | 4.43e-86 | 258 |
| MS.gene85520.t1 | MTR_7g090230 | 63.816 | 152 | 54 | 1 | 111 | 261 | 273 | 424 | 2.56e-69 | 221 |
| MS.gene85520.t1 | MTR_1g051180 | 60.000 | 160 | 55 | 1 | 111 | 261 | 204 | 363 | 8.44e-67 | 212 |
| MS.gene85520.t1 | MTR_5g083110 | 53.061 | 147 | 67 | 2 | 115 | 261 | 94 | 238 | 4.39e-49 | 163 |
| MS.gene85520.t1 | MTR_3g465550 | 41.509 | 212 | 113 | 5 | 55 | 257 | 19 | 228 | 1.19e-46 | 156 |
| MS.gene85520.t1 | MTR_5g072400 | 41.711 | 187 | 100 | 3 | 82 | 261 | 69 | 253 | 1.16e-45 | 155 |
| MS.gene85520.t1 | MTR_3g071510 | 51.389 | 144 | 68 | 2 | 118 | 261 | 93 | 234 | 2.78e-45 | 153 |
| MS.gene85520.t1 | MTR_7g104720 | 45.946 | 148 | 78 | 1 | 114 | 261 | 259 | 404 | 1.00e-40 | 145 |
| MS.gene85520.t1 | MTR_1g090400 | 46.309 | 149 | 78 | 2 | 114 | 262 | 223 | 369 | 7.76e-40 | 142 |
| MS.gene85520.t1 | MTR_7g106500 | 45.513 | 156 | 74 | 3 | 116 | 262 | 126 | 279 | 8.89e-40 | 140 |
| MS.gene85520.t1 | MTR_8g099665 | 45.223 | 157 | 77 | 3 | 113 | 261 | 212 | 367 | 1.49e-36 | 134 |
| MS.gene85520.t1 | MTR_8g106900 | 45.161 | 155 | 80 | 2 | 113 | 262 | 120 | 274 | 1.82e-36 | 131 |
| MS.gene85520.t1 | MTR_7g010090 | 44.242 | 165 | 73 | 3 | 116 | 261 | 267 | 431 | 3.65e-35 | 131 |
| MS.gene85520.t1 | MTR_6g011640 | 41.618 | 173 | 81 | 6 | 109 | 261 | 224 | 396 | 1.04e-34 | 129 |
| MS.gene85520.t1 | MTR_3g030520 | 38.994 | 159 | 79 | 4 | 122 | 262 | 141 | 299 | 1.13e-24 | 100 |
| MS.gene85520.t1 | MTR_5g048870 | 38.144 | 97 | 55 | 2 | 109 | 200 | 60 | 156 | 1.83e-12 | 64.3 |
| MS.gene85520.t1 | MTR_7g079015 | 34.066 | 91 | 53 | 2 | 156 | 239 | 1 | 91 | 6.30e-11 | 58.5 |
| MS.gene85520.t1 | MTR_1g095960 | 34.483 | 87 | 50 | 2 | 160 | 239 | 32 | 118 | 7.65e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85520.t1 | AT5G13810 | 55.682 | 264 | 97 | 5 | 6 | 262 | 23 | 273 | 2.55e-95 | 282 |
| MS.gene85520.t1 | AT2G41330 | 55.828 | 163 | 70 | 2 | 101 | 261 | 239 | 401 | 6.60e-55 | 182 |
| MS.gene85520.t1 | AT3G57070 | 56.494 | 154 | 65 | 1 | 110 | 261 | 262 | 415 | 1.07e-54 | 182 |
| MS.gene85520.t1 | AT5G58530 | 45.000 | 200 | 94 | 5 | 76 | 262 | 70 | 266 | 7.86e-50 | 166 |
| MS.gene85520.t1 | AT5G39865 | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.13e-42 | 150 |
| MS.gene85520.t1 | AT5G06470 | 41.618 | 173 | 86 | 4 | 102 | 262 | 70 | 239 | 4.39e-40 | 139 |
| MS.gene85520.t1 | AT3G28850 | 42.614 | 176 | 71 | 3 | 116 | 261 | 251 | 426 | 1.08e-38 | 140 |
| MS.gene85520.t1 | AT1G32760 | 44.898 | 196 | 92 | 5 | 75 | 262 | 127 | 314 | 1.70e-38 | 137 |
| MS.gene85520.t1 | AT4G10630 | 46.584 | 161 | 74 | 4 | 114 | 262 | 174 | 334 | 2.30e-38 | 138 |
| MS.gene85520.t1 | AT3G11773 | 46.479 | 142 | 73 | 3 | 121 | 262 | 12 | 150 | 4.18e-36 | 126 |
| MS.gene85520.t1 | AT5G03870 | 44.667 | 150 | 82 | 1 | 114 | 262 | 235 | 384 | 2.56e-35 | 131 |
| MS.gene85520.t1 | AT1G64500 | 43.421 | 152 | 78 | 3 | 118 | 261 | 214 | 365 | 2.87e-34 | 127 |
| MS.gene85520.t1 | AT5G01420 | 43.333 | 150 | 82 | 3 | 114 | 262 | 254 | 401 | 7.38e-32 | 122 |
| MS.gene85520.t1 | AT3G11773 | 47.321 | 112 | 56 | 3 | 151 | 262 | 92 | 200 | 5.64e-26 | 102 |
Find 62 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 3.4:+12035581 | MS.gene85520:CDS |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.268180 | 3.4:+12037002 | MS.gene85520:CDS |
| CTACCTCAAGTGTTCGTTAG+AGG | 0.363674 | 3.4:+12036753 | MS.gene85520:CDS |
| CCACGTGCGGCTTCCAAGTT+AGG | 0.365963 | 3.4:+12035414 | MS.gene85520:CDS |
| ATGAAGCGGGGATGTTGTTT+CGG | 0.375424 | 3.4:+12035466 | MS.gene85520:CDS |
| ATCAAATCTCTATTTGAAAC+TGG | 0.396457 | 3.4:+12036801 | MS.gene85520:CDS |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.412980 | 3.4:+12035632 | MS.gene85520:CDS |
| CTTGGAAGCCGCACGTGGTT+CGG | 0.416891 | 3.4:-12035409 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 3.4:+12036814 | MS.gene85520:CDS |
| GGGGATGTTGTTTCGGTTGG+CGG | 0.419111 | 3.4:+12035473 | MS.gene85520:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 3.4:+12035605 | MS.gene85520:CDS |
| CGGTCTAGAAATTCATTGAA+TGG | 0.421502 | 3.4:-12035228 | None:intergenic |
| TTAGGTCAGAAGCCGCATTC+TGG | 0.430921 | 3.4:+12035432 | MS.gene85520:CDS |
| AGCGGGGATGTTGTTTCGGT+TGG | 0.440075 | 3.4:+12035470 | MS.gene85520:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 3.4:-12035402 | None:intergenic |
| ATGCGGCTTCTGACCTAACT+TGG | 0.443556 | 3.4:-12035427 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 3.4:-12036853 | None:intergenic |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 3.4:-12036852 | None:intergenic |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 3.4:+12035263 | MS.gene85520:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 3.4:+12035536 | MS.gene85520:CDS |
| CAACTTTCGCAAACAAAGCC+AGG | 0.474869 | 3.4:-12036864 | None:intergenic |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 3.4:-12037015 | None:intergenic |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 3.4:+12036713 | MS.gene85520:intron |
| GCGAAAGTTGTGGCGATGCT+AGG | 0.476444 | 3.4:+12036877 | MS.gene85520:CDS |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 3.4:-12035253 | None:intergenic |
| ATCATCTTTACGTGGAAGAA+TGG | 0.487437 | 3.4:+12035296 | MS.gene85520:CDS |
| TCAGAAGCCGCATTCTGGTT+CGG | 0.489973 | 3.4:+12035437 | MS.gene85520:CDS |
| AGGGTTGTTGAAAAGATGCT+TGG | 0.515319 | 3.4:+12036953 | MS.gene85520:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 3.4:+12035401 | MS.gene85520:CDS |
| AATGAATTTCTAGACCGGTC+CGG | 0.523541 | 3.4:+12035234 | MS.gene85520:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 3.4:+12036969 | MS.gene85520:CDS |
| GTGAGAATTGCAGTGGGAGT+AGG | 0.533959 | 3.4:+12036910 | MS.gene85520:CDS |
| GGCTTTGTTTGCGAAAGTTG+TGG | 0.541080 | 3.4:+12036867 | MS.gene85520:CDS |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 3.4:-12035248 | None:intergenic |
| GGTTGGCGGATGCTGATGAT+CGG | 0.555952 | 3.4:+12035487 | MS.gene85520:CDS |
| CATTCAATGAATTTCTAGAC+CGG | 0.560812 | 3.4:+12035229 | MS.gene85520:CDS |
| GGTTCGGAAGAAAATGAAGC+GGG | 0.561225 | 3.4:+12035453 | MS.gene85520:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 3.4:+12035517 | MS.gene85520:CDS |
| GTTCTGTGATTATGAAAATG+AGG | 0.571372 | 3.4:+12037031 | MS.gene85520:CDS |
| GTTAGAGGAAAGTACATTGG+TGG | 0.572212 | 3.4:+12036768 | MS.gene85520:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 3.4:+12036714 | MS.gene85520:intron |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 3.4:+12035255 | MS.gene85520:CDS |
| TTCGTTAGAGGAAAGTACAT+TGG | 0.597968 | 3.4:+12036765 | MS.gene85520:CDS |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 3.4:+12035516 | MS.gene85520:CDS |
| CTCCCACTGCAATTCTCACA+AGG | 0.613824 | 3.4:-12036906 | None:intergenic |
| TACCTTGTGAGAATTGCAGT+GGG | 0.615095 | 3.4:+12036904 | MS.gene85520:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.616068 | 3.4:+12036903 | MS.gene85520:CDS |
| AAATTATTCGATGAGGACGA+AGG | 0.616456 | 3.4:+12036933 | MS.gene85520:CDS |
| AATTATTCGATGAGGACGAA+GGG | 0.626444 | 3.4:+12036934 | MS.gene85520:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 3.4:-12037005 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 3.4:+12035494 | MS.gene85520:CDS |
| CCTAACTTGGAAGCCGCACG+TGG | 0.637777 | 3.4:-12035414 | None:intergenic |
| ACGTGTGCATCGTGTTCGAT+CGG | 0.643592 | 3.4:-12035182 | None:intergenic |
| GAATTGAAAAGGATTCTCGA+AGG | 0.645661 | 3.4:+12036825 | MS.gene85520:CDS |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 3.4:+12036719 | MS.gene85520:intron |
| TTCTGTGATTATGAAAATGA+GGG | 0.648644 | 3.4:+12037032 | MS.gene85520:CDS |
| TTTCCTCTAACGAACACTTG+AGG | 0.658788 | 3.4:-12036756 | None:intergenic |
| TGGTTCGGAAGAAAATGAAG+CGG | 0.673544 | 3.4:+12035452 | MS.gene85520:CDS |
| GCAATGAGAATGGACTTGTA+AGG | 0.683440 | 3.4:+12036979 | MS.gene85520:CDS |
| GAGTAGGAAATTATTCGATG+AGG | 0.731014 | 3.4:+12036926 | MS.gene85520:CDS |
| GTTCGGAAGAAAATGAAGCG+GGG | 0.733757 | 3.4:+12035454 | MS.gene85520:CDS |
| TCAATGAAATCATCTTTACG+TGG | 0.737140 | 3.4:+12035288 | MS.gene85520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGAATTAAAAGAAA+GGG | - | chr3.4:12036089-12036108 | None:intergenic | 10.0% |
| !! | CAAAATTTGAATTAAAAGAA+AGG | - | chr3.4:12036090-12036109 | None:intergenic | 15.0% |
| !!! | GTTACAATTTTTTTAACATA+TGG | + | chr3.4:12036015-12036034 | MS.gene85520:intron | 15.0% |
| !! | AATTAGAAAAGCTATGAATT+TGG | + | chr3.4:12036376-12036395 | MS.gene85520:intron | 20.0% |
| !! | ATTAGAAAAGCTATGAATTT+GGG | + | chr3.4:12036377-12036396 | MS.gene85520:intron | 20.0% |
| !! | TATAAAACTATGTTCTATAC+TGG | - | chr3.4:12036635-12036654 | None:intergenic | 20.0% |
| !!! | ACATACCTATGATTTTTTTT+TGG | + | chr3.4:12035932-12035951 | MS.gene85520:intron | 20.0% |
| ! | AAAAAGAACAAGAAGAAAGA+AGG | - | chr3.4:12035665-12035684 | None:intergenic | 25.0% |
| ! | AACATGATAATACAGAATCA+CGG | - | chr3.4:12035747-12035766 | None:intergenic | 25.0% |
| ! | AACATGCATTAAGAAAATTG+TGG | - | chr3.4:12035818-12035837 | None:intergenic | 25.0% |
| ! | AAGCTTTCAAAAATGATCAA+CGG | - | chr3.4:12036570-12036589 | None:intergenic | 25.0% |
| ! | ACATGCATTAAGAAAATTGT+GGG | - | chr3.4:12035817-12035836 | None:intergenic | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | - | chr3.4:12036228-12036247 | None:intergenic | 25.0% |
| ! | AGAGCACAAAAAATAAAACT+GGG | - | chr3.4:12036127-12036146 | None:intergenic | 25.0% |
| ! | ATGAATTTGGGAAATTGATT+TGG | + | chr3.4:12036389-12036408 | MS.gene85520:intron | 25.0% |
| ! | GACAAAATTAAGACAAAACA+TGG | - | chr3.4:12036688-12036707 | None:intergenic | 25.0% |
| ! | TAACATATGGTGAAAAATGA+GGG | + | chr3.4:12036028-12036047 | MS.gene85520:intron | 25.0% |
| ! | TGAATTAAAAGAAAGGGAAT+TGG | - | chr3.4:12036083-12036102 | None:intergenic | 25.0% |
| ! | TGATTGTTGATGCATAATAA+AGG | + | chr3.4:12036195-12036214 | MS.gene85520:intron | 25.0% |
| ! | TTAACATATGGTGAAAAATG+AGG | + | chr3.4:12036027-12036046 | MS.gene85520:intron | 25.0% |
| ! | TTCTGTGATTATGAAAATGA+GGG | + | chr3.4:12037032-12037051 | MS.gene85520:CDS | 25.0% |
| !! | AAGAGCACAAAAAATAAAAC+TGG | - | chr3.4:12036128-12036147 | None:intergenic | 25.0% |
| !! | ATCAAATCTCTATTTGAAAC+TGG | + | chr3.4:12036801-12036820 | MS.gene85520:CDS | 25.0% |
| !! | TGTTCTTTTTATGACATGTA+CGG | + | chr3.4:12035675-12035694 | MS.gene85520:intron | 25.0% |
| !!! | CACAGTTTTTTATTTAGACT+CGG | + | chr3.4:12036428-12036447 | MS.gene85520:intron | 25.0% |
| !!! | CTGTTAAGATGATTTTGAAA+GGG | + | chr3.4:12035568-12035587 | MS.gene85520:CDS | 25.0% |
| !!! | GTTTTGATTTTTAGTAGACA+GGG | + | chr3.4:12036150-12036169 | MS.gene85520:intron | 25.0% |
| AATTCAGCAAAGTCAATATG+TGG | - | chr3.4:12036291-12036310 | None:intergenic | 30.0% | |
| ATTCAGCAAAGTCAATATGT+GGG | - | chr3.4:12036290-12036309 | None:intergenic | 30.0% | |
| CCAGACCAAAAAAAAATCAT+AGG | - | chr3.4:12035940-12035959 | None:intergenic | 30.0% | |
| GTTCTGTGATTATGAAAATG+AGG | + | chr3.4:12037031-12037050 | MS.gene85520:CDS | 30.0% | |
| TCAATGAAATCATCTTTACG+TGG | + | chr3.4:12035288-12035307 | MS.gene85520:CDS | 30.0% | |
| TCTGATATCAAATTAACAGC+AGG | + | chr3.4:12036503-12036522 | MS.gene85520:intron | 30.0% | |
| TTAAGACAAAACATGGACAT+AGG | - | chr3.4:12036681-12036700 | None:intergenic | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | + | chr3.4:12036814-12036833 | MS.gene85520:CDS | 30.0% | |
| ! | AGGGTTTAAAATTGTTCTTG+TGG | + | chr3.4:12036169-12036188 | MS.gene85520:intron | 30.0% |
| ! | CATTCAATGAATTTCTAGAC+CGG | + | chr3.4:12035229-12035248 | MS.gene85520:CDS | 30.0% |
| ! | GCTGTTAAGATGATTTTGAA+AGG | + | chr3.4:12035567-12035586 | MS.gene85520:CDS | 30.0% |
| ! | GTTTAAAATTGTTCTTGTGG+TGG | + | chr3.4:12036172-12036191 | MS.gene85520:intron | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | + | chr3.4:12035605-12035624 | MS.gene85520:CDS | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | + | chr3.4:12035574-12035593 | MS.gene85520:CDS | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | + | chr3.4:12035575-12035594 | MS.gene85520:CDS | 30.0% |
| !!! | CCTATGATTTTTTTTTGGTC+TGG | + | chr3.4:12035937-12035956 | MS.gene85520:intron | 30.0% |
| !!! | CGTTTTGATTTTTAGTAGAC+AGG | + | chr3.4:12036149-12036168 | MS.gene85520:intron | 30.0% |
| AAATTATTCGATGAGGACGA+AGG | + | chr3.4:12036933-12036952 | MS.gene85520:CDS | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | + | chr3.4:12035263-12035282 | MS.gene85520:CDS | 35.0% | |
| AATTATTCGATGAGGACGAA+GGG | + | chr3.4:12036934-12036953 | MS.gene85520:CDS | 35.0% | |
| ATCATCTTTACGTGGAAGAA+TGG | + | chr3.4:12035296-12035315 | MS.gene85520:CDS | 35.0% | |
| CAAATTAACAGCAGGAAAAC+CGG | + | chr3.4:12036511-12036530 | MS.gene85520:intron | 35.0% | |
| CGGTCTAGAAATTCATTGAA+TGG | - | chr3.4:12035231-12035250 | None:intergenic | 35.0% | |
| GAACAAGAAGAAAGAAGGTT+TGG | - | chr3.4:12035660-12035679 | None:intergenic | 35.0% | |
| GAATTGAAAAGGATTCTCGA+AGG | + | chr3.4:12036825-12036844 | MS.gene85520:CDS | 35.0% | |
| GAGTAGGAAATTATTCGATG+AGG | + | chr3.4:12036926-12036945 | MS.gene85520:CDS | 35.0% | |
| GGTTCGTTAAGCAAATTCTA+CGG | + | chr3.4:12035255-12035274 | MS.gene85520:CDS | 35.0% | |
| TGCTTTCAGAAAAGAATTGC+AGG | + | chr3.4:12035632-12035651 | MS.gene85520:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | + | chr3.4:12035517-12035536 | MS.gene85520:CDS | 35.0% | |
| ! | GTAGAATTTGCTTAACGAAC+CGG | - | chr3.4:12035256-12035275 | None:intergenic | 35.0% |
| ! | TTCGTTAGAGGAAAGTACAT+TGG | + | chr3.4:12036765-12036784 | MS.gene85520:CDS | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | + | chr3.4:12035581-12035600 | MS.gene85520:CDS | 35.0% |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | + | chr3.4:12035580-12035599 | MS.gene85520:CDS | 35.0% |
| AAAAATTCGCTGCGACTGTA+TGG | - | chr3.4:12036539-12036558 | None:intergenic | 40.0% | |
| ACAGAACATCATTCCAGAAC+AGG | - | chr3.4:12037018-12037037 | None:intergenic | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | + | chr3.4:12035536-12035555 | MS.gene85520:CDS | 40.0% | |
| AGGGTTGTTGAAAAGATGCT+TGG | + | chr3.4:12036953-12036972 | MS.gene85520:CDS | 40.0% | |
| ATACCTTGTGAGAATTGCAG+TGG | + | chr3.4:12036903-12036922 | MS.gene85520:CDS | 40.0% | |
| GTGTATTTGACGAGTTTGAG+AGG | + | chr3.4:12035516-12035535 | MS.gene85520:CDS | 40.0% | |
| TACCTTGTGAGAATTGCAGT+GGG | + | chr3.4:12036904-12036923 | MS.gene85520:CDS | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | - | chr3.4:12036759-12036778 | None:intergenic | 40.0% | |
| ! | AATGAATTTCTAGACCGGTC+CGG | + | chr3.4:12035234-12035253 | MS.gene85520:CDS | 40.0% |
| ! | CTGCATTTAAAGTTGTCACG+AGG | + | chr3.4:12036235-12036254 | MS.gene85520:intron | 40.0% |
| ! | GCAATGAGAATGGACTTGTA+AGG | + | chr3.4:12036979-12036998 | MS.gene85520:CDS | 40.0% |
| ! | GTTAGAGGAAAGTACATTGG+TGG | + | chr3.4:12036768-12036787 | MS.gene85520:CDS | 40.0% |
| ! | TGGTTCGGAAGAAAATGAAG+CGG | + | chr3.4:12035452-12035471 | MS.gene85520:CDS | 40.0% |
| ! | TTTTCTTCCGAACCAGAATG+CGG | - | chr3.4:12035447-12035466 | None:intergenic | 40.0% |
| AACAAAGCCAGGCTTCATCT+TGG | - | chr3.4:12036856-12036875 | None:intergenic | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | - | chr3.4:12036855-12036874 | None:intergenic | 45.0% | |
| ATTGTTGCTGCAGTCTGTGA+TGG | + | chr3.4:12036713-12036732 | MS.gene85520:intron | 45.0% | |
| ATTTGCTTAACGAACCGGAC+CGG | - | chr3.4:12035251-12035270 | None:intergenic | 45.0% | |
| CAACTTTCGCAAACAAAGCC+AGG | - | chr3.4:12036867-12036886 | None:intergenic | 45.0% | |
| CTACCTCAAGTGTTCGTTAG+AGG | + | chr3.4:12036753-12036772 | MS.gene85520:CDS | 45.0% | |
| GGTTCGGAAGAAAATGAAGC+GGG | + | chr3.4:12035453-12035472 | MS.gene85520:CDS | 45.0% | |
| GTTCGGAAGAAAATGAAGCG+GGG | + | chr3.4:12035454-12035473 | MS.gene85520:CDS | 45.0% | |
| TGCTTGGAGTGCAATGAGAA+TGG | + | chr3.4:12036969-12036988 | MS.gene85520:CDS | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | + | chr3.4:12036714-12036733 | MS.gene85520:intron | 45.0% | |
| ! | ATGAAGCGGGGATGTTGTTT+CGG | + | chr3.4:12035466-12035485 | MS.gene85520:CDS | 45.0% |
| ! | GTCACGAGGTCTTTGATGAT+TGG | + | chr3.4:12036249-12036268 | MS.gene85520:intron | 45.0% |
| !! | GGCTTTGTTTGCGAAAGTTG+TGG | + | chr3.4:12036867-12036886 | MS.gene85520:CDS | 45.0% |
| !! | TATGATCACGTTGACTCGTC+TGG | + | chr3.4:12035877-12035896 | MS.gene85520:intron | 45.0% |
| ACGTGTGCATCGTGTTCGAT+CGG | - | chr3.4:12035185-12035204 | None:intergenic | 50.0% | |
| ATGCGGCTTCTGACCTAACT+TGG | - | chr3.4:12035430-12035449 | None:intergenic | 50.0% | |
| ATTCCAGAACAGGCGCAACA+AGG | - | chr3.4:12037008-12037027 | None:intergenic | 50.0% | |
| CTCCCACTGCAATTCTCACA+AGG | - | chr3.4:12036909-12036928 | None:intergenic | 50.0% | |
| GGATGCTGATGATCGGATTG+TGG | + | chr3.4:12035494-12035513 | MS.gene85520:CDS | 50.0% | |
| GTGAGAATTGCAGTGGGAGT+AGG | + | chr3.4:12036910-12036929 | MS.gene85520:CDS | 50.0% | |
| TTAGGTCAGAAGCCGCATTC+TGG | + | chr3.4:12035432-12035451 | MS.gene85520:CDS | 50.0% | |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | + | chr3.4:12036846-12036865 | MS.gene85520:CDS | 50.0% |
| ! | TCAGAAGCCGCATTCTGGTT+CGG | + | chr3.4:12035437-12035456 | MS.gene85520:CDS | 50.0% |
| ! | TCTTTTGTCGTCGTCGTCGT+TGG | - | chr3.4:12035351-12035370 | None:intergenic | 50.0% |
| ACCTTCTTCCGAACCACGTG+CGG | + | chr3.4:12035401-12035420 | MS.gene85520:CDS | 55.0% | |
| GCGAAAGTTGTGGCGATGCT+AGG | + | chr3.4:12036877-12036896 | MS.gene85520:CDS | 55.0% | |
| TCGCTGCGACTGTATGGATC+CGG | - | chr3.4:12036533-12036552 | None:intergenic | 55.0% | |
| TGTCCTTGTTGCGCCTGTTC+TGG | + | chr3.4:12037002-12037021 | MS.gene85520:CDS | 55.0% | |
| ! | GGTTGGCGGATGCTGATGAT+CGG | + | chr3.4:12035487-12035506 | MS.gene85520:CDS | 55.0% |
| !! | AGCGGGGATGTTGTTTCGGT+TGG | + | chr3.4:12035470-12035489 | MS.gene85520:CDS | 55.0% |
| !! | GGGGATGTTGTTTCGGTTGG+CGG | + | chr3.4:12035473-12035492 | MS.gene85520:CDS | 55.0% |
| CCACGTGCGGCTTCCAAGTT+AGG | + | chr3.4:12035414-12035433 | MS.gene85520:CDS | 60.0% | |
| CCTAACTTGGAAGCCGCACG+TGG | - | chr3.4:12035417-12035436 | None:intergenic | 60.0% | |
| CTTGGAAGCCGCACGTGGTT+CGG | - | chr3.4:12035412-12035431 | None:intergenic | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | + | chr3.4:12036719-12036738 | MS.gene85520:intron | 60.0% |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | - | chr3.4:12035405-12035424 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12035159 | 12037085 | 12035159 | ID=MS.gene85520 |
| chr3.4 | mRNA | 12035159 | 12037085 | 12035159 | ID=MS.gene85520.t1;Parent=MS.gene85520 |
| chr3.4 | exon | 12035159 | 12035653 | 12035159 | ID=MS.gene85520.t1.exon1;Parent=MS.gene85520.t1 |
| chr3.4 | CDS | 12035159 | 12035653 | 12035159 | ID=cds.MS.gene85520.t1;Parent=MS.gene85520.t1 |
| chr3.4 | exon | 12036726 | 12037085 | 12036726 | ID=MS.gene85520.t1.exon2;Parent=MS.gene85520.t1 |
| chr3.4 | CDS | 12036726 | 12037085 | 12036726 | ID=cds.MS.gene85520.t1;Parent=MS.gene85520.t1 |
| Gene Sequence |
| Protein sequence |
