Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85984.t1 | XP_013444632.1 | 97.3 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 2.90E-98 | 367.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85984.t1 | Q5ZI57 | 55.8 | 163 | 72 | 0 | 19 | 181 | 14 | 176 | 1.5e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85984.t1 | G8A2X1 | 97.3 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 2.1e-98 | 367.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92142 | MS.gene85984 | PPI |
| MS.gene85984 | MS.gene22289 | PPI |
| MS.gene85984 | MS.gene04771 | PPI |
| MS.gene85984 | MS.gene21679 | PPI |
| MS.gene85984 | MS.gene015741 | PPI |
| MS.gene85984 | MS.gene21951 | PPI |
| MS.gene85984 | MS.gene59609 | PPI |
| MS.gene85984 | MS.gene05927 | PPI |
| MS.gene85984 | MS.gene79721 | PPI |
| MS.gene85984 | MS.gene049131 | PPI |
| MS.gene85984 | MS.gene98171 | PPI |
| MS.gene85984 | MS.gene024701 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85984.t1 | MTR_8g027700 | 97.312 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 1.51e-134 | 374 |
| MS.gene85984.t1 | MTR_4g081170 | 92.473 | 186 | 14 | 0 | 1 | 186 | 1 | 186 | 1.20e-127 | 356 |
| MS.gene85984.t1 | MTR_8g027700 | 96.296 | 135 | 5 | 0 | 52 | 186 | 1 | 135 | 1.26e-94 | 271 |
| MS.gene85984.t1 | MTR_4g027400 | 87.234 | 47 | 6 | 0 | 1 | 47 | 1 | 47 | 7.24e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85984.t1 | AT5G54750 | 84.409 | 186 | 29 | 0 | 1 | 186 | 1 | 186 | 1.55e-117 | 331 |
| MS.gene85984.t1 | AT5G54750 | 78.894 | 199 | 29 | 1 | 1 | 186 | 1 | 199 | 1.60e-113 | 321 |
Find 34 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTACTCATCATCCTTATA+TGG | 0.260125 | 8.2:+70001786 | None:intergenic |
| TCCTTATATGGATACTCTTC+TGG | 0.287013 | 8.2:+70001798 | None:intergenic |
| GACATGTTGTTGTATTGTTT+TGG | 0.317631 | 8.2:-70002569 | MS.gene85984:CDS |
| TCGCCAGATCGAGGAGCAAC+AGG | 0.350787 | 8.2:+70004922 | None:intergenic |
| GCCCCTGTTGCTCCTCGATC+TGG | 0.370275 | 8.2:-70004925 | MS.gene85984:CDS |
| TCCAGAAGAGTATCCATATA+AGG | 0.373933 | 8.2:-70001799 | MS.gene85984:CDS |
| ACAGAAACTTACCATATCTA+AGG | 0.380693 | 8.2:+70002456 | None:intergenic |
| GCGTCAATTGCTTACAGATC+TGG | 0.400311 | 8.2:-70004701 | MS.gene85984:CDS |
| GAACTGTTTACTCTGACATA+TGG | 0.415874 | 8.2:-70004733 | MS.gene85984:CDS |
| AACTGTTTACTCTGACATAT+GGG | 0.439336 | 8.2:-70004732 | MS.gene85984:CDS |
| CACTACTGCAACATATTAAG+TGG | 0.462095 | 8.2:-70002493 | MS.gene85984:CDS |
| TTACTGCATCTGTGACCAAT+TGG | 0.470926 | 8.2:-70002603 | MS.gene85984:CDS |
| ATATTAAGTGGAGTCATTAG+AGG | 0.471581 | 8.2:-70002481 | MS.gene85984:CDS |
| GAGCTTCCTGACACTTATCA+AGG | 0.487406 | 8.2:-70002520 | MS.gene85984:CDS |
| CATTAGAGGAGCCTTAGATA+TGG | 0.489659 | 8.2:-70002467 | MS.gene85984:intron |
| TGCAGACCTTGATAAGTGTC+AGG | 0.493750 | 8.2:+70002514 | None:intergenic |
| CAATGAAGGCTGAGGTCACT+TGG | 0.495529 | 8.2:-70001884 | MS.gene85984:CDS |
| TGTCCCTTCAGCATTCCAAT+TGG | 0.505887 | 8.2:+70002588 | None:intergenic |
| CACTACTCAGGTGTCAATGA+AGG | 0.520967 | 8.2:-70001898 | MS.gene85984:intron |
| TGGCTACATGACGCGCTTCG+AGG | 0.530494 | 8.2:-70001864 | MS.gene85984:CDS |
| GTTGGTTTGAAAATGTTCCT+TGG | 0.533914 | 8.2:-70002628 | MS.gene85984:CDS |
| TTGTGTTGATTTCAGAGAGA+CGG | 0.541444 | 8.2:-70004227 | MS.gene85984:CDS |
| TCAGGTGTCAATGAAGGCTG+AGG | 0.584417 | 8.2:-70001892 | MS.gene85984:intron |
| ATTGCTTACAGATCTGGAAG+AGG | 0.584590 | 8.2:-70004695 | MS.gene85984:CDS |
| CGCCAGATCGAGGAGCAACA+GGG | 0.594249 | 8.2:+70004923 | None:intergenic |
| TGATTTCAGAGAGACGGCTG+AGG | 0.601112 | 8.2:-70004221 | MS.gene85984:CDS |
| AGCTCAACAAAATCTACCAA+AGG | 0.607221 | 8.2:+70002538 | None:intergenic |
| GTGACCAATTGGAATGCTGA+AGG | 0.607506 | 8.2:-70002592 | MS.gene85984:CDS |
| GCCAGATCGAGGAGCAACAG+GGG | 0.610973 | 8.2:+70004924 | None:intergenic |
| AATATTGCATCGCCAGATCG+AGG | 0.628537 | 8.2:+70004913 | None:intergenic |
| GACGGCTGAGGTGATTGCAA+AGG | 0.636993 | 8.2:-70004209 | MS.gene85984:intron |
| TGACCAATTGGAATGCTGAA+GGG | 0.652019 | 8.2:-70002591 | MS.gene85984:CDS |
| ACTGTTTACTCTGACATATG+GGG | 0.685212 | 8.2:-70004731 | MS.gene85984:CDS |
| TCACAGATGCAGTAACACCA+AGG | 0.725020 | 8.2:+70002611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTATTTATTAAATAATG+TGG | + | chr8.2:70002702-70002721 | None:intergenic | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+CGG | - | chr8.2:70002186-70002205 | MS.gene85984:intron | 10.0% |
| !! | ATATCTTTATTAAAAGACTT+AGG | + | chr8.2:70003075-70003094 | None:intergenic | 15.0% |
| !! | ATATTATATAACTAAAGCAT+GGG | + | chr8.2:70003276-70003295 | None:intergenic | 15.0% |
| !! | CAAGTATGTTTATAAATTAT+AGG | - | chr8.2:70003344-70003363 | MS.gene85984:intron | 15.0% |
| !! | TATATTATATAACTAAAGCA+TGG | + | chr8.2:70003277-70003296 | None:intergenic | 15.0% |
| !! | TATCTTTATTAAAAGACTTA+GGG | + | chr8.2:70003074-70003093 | None:intergenic | 15.0% |
| !! | TATTAGTAAAGCATATTTAA+AGG | - | chr8.2:70004033-70004052 | MS.gene85984:intron | 15.0% |
| !!! | AATAATGAATGGTTTTTTAA+AGG | + | chr8.2:70004620-70004639 | None:intergenic | 15.0% |
| !!! | TTTAACTTCCATAATTTATT+GGG | - | chr8.2:70004694-70004713 | MS.gene85984:CDS | 15.0% |
| !!! | TTTTAACTTCCATAATTTAT+TGG | - | chr8.2:70004693-70004712 | MS.gene85984:CDS | 15.0% |
| !! | AAAATACAGATATGAATCTA+GGG | + | chr8.2:70003830-70003849 | None:intergenic | 20.0% |
| !! | AACTGATAAGAGTAAAATAA+TGG | + | chr8.2:70003476-70003495 | None:intergenic | 20.0% |
| !! | CATACTTGTTCATATAAATT+TGG | + | chr8.2:70003332-70003351 | None:intergenic | 20.0% |
| !! | CTGTAAAAAAAAAAAAGTGA+GGG | + | chr8.2:70001868-70001887 | None:intergenic | 20.0% |
| !! | TATATGTGATATGTTAAATG+AGG | + | chr8.2:70004394-70004413 | None:intergenic | 20.0% |
| !! | TCTGTAAAAAAAAAAAAGTG+AGG | + | chr8.2:70001869-70001888 | None:intergenic | 20.0% |
| !! | TGTATACATAAATAAGAGAA+AGG | - | chr8.2:70003153-70003172 | MS.gene85984:intron | 20.0% |
| !! | TTACTAATCAAGCAAATTAA+GGG | + | chr8.2:70002662-70002681 | None:intergenic | 20.0% |
| !! | TTTACTAATCAAGCAAATTA+AGG | + | chr8.2:70002663-70002682 | None:intergenic | 20.0% |
| !!! | ATCTAAAAGTTCATTTTGAT+TGG | - | chr8.2:70003927-70003946 | MS.gene85984:intron | 20.0% |
| !!! | CAACTCATAATTATTTTTCT+TGG | - | chr8.2:70004721-70004740 | MS.gene85984:CDS | 20.0% |
| ! | ACTTTGGACTTATAACTTAT+AGG | + | chr8.2:70003755-70003774 | None:intergenic | 25.0% |
| ! | AGATTATTCATGACTTTGTA+TGG | - | chr8.2:70004531-70004550 | MS.gene85984:intron | 25.0% |
| ! | ATTTATCCTCATTGTGATAA+AGG | - | chr8.2:70002580-70002599 | MS.gene85984:CDS | 25.0% |
| ! | CAAAATACAGATATGAATCT+AGG | + | chr8.2:70003831-70003850 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr8.2:70004337-70004356 | None:intergenic | 25.0% |
| ! | TAATGATAATTCTATGTAGC+AGG | + | chr8.2:70003453-70003472 | None:intergenic | 25.0% |
| ! | TACTAATCAAGCAAATTAAG+GGG | + | chr8.2:70002661-70002680 | None:intergenic | 25.0% |
| ! | TATGGTAATAGTTTGATTGT+TGG | - | chr8.2:70004484-70004503 | MS.gene85984:intron | 25.0% |
| ! | TATGGTGTGTAATTGTATTT+GGG | - | chr8.2:70002357-70002376 | MS.gene85984:intron | 25.0% |
| ! | TGCTTTCAGAAAATAATGAA+TGG | + | chr8.2:70004631-70004650 | None:intergenic | 25.0% |
| ! | TTATGGTGTGTAATTGTATT+TGG | - | chr8.2:70002356-70002375 | MS.gene85984:intron | 25.0% |
| ! | TTCTTATCAAAATGACTGAT+AGG | - | chr8.2:70003098-70003117 | MS.gene85984:intron | 25.0% |
| ! | TTGTATGGTTTATCTATGTA+AGG | - | chr8.2:70004546-70004565 | MS.gene85984:intron | 25.0% |
| ! | TTTCACATCTAAATAGTTGT+GGG | - | chr8.2:70002318-70002337 | MS.gene85984:intron | 25.0% |
| !! | ATTTTTCCTTATCACAGTAT+AGG | + | chr8.2:70003048-70003067 | None:intergenic | 25.0% |
| !! | TTTTCACATCTAAATAGTTG+TGG | - | chr8.2:70002317-70002336 | MS.gene85984:intron | 25.0% |
| !!! | AAAGGTATTGTTTTGTTGTT+TGG | - | chr8.2:70002525-70002544 | MS.gene85984:CDS | 25.0% |
| !!! | CTCATAATTATTTTTCTTGG+AGG | - | chr8.2:70004724-70004743 | MS.gene85984:CDS | 25.0% |
| !!! | GTTGTTTTCCCAATAAATTA+TGG | + | chr8.2:70004705-70004724 | None:intergenic | 25.0% |
| !!! | TTCTTACCTCATTTTTTTTG+TGG | - | chr8.2:70004289-70004308 | MS.gene85984:CDS | 25.0% |
| !!! | TTTTCAAGATTTTGCTTTCT+TGG | - | chr8.2:70004581-70004600 | MS.gene85984:intron | 25.0% |
| AAAAGCTTAGTTAGTTGGTT+AGG | - | chr8.2:70002923-70002942 | MS.gene85984:intron | 30.0% | |
| AACTGTTTACTCTGACATAT+GGG | - | chr8.2:70001984-70002003 | MS.gene85984:intron | 30.0% | |
| ACAGAAACTTACCATATCTA+AGG | + | chr8.2:70004263-70004282 | None:intergenic | 30.0% | |
| ACTATATAACTTCTGTTCTG+TGG | - | chr8.2:70002864-70002883 | MS.gene85984:intron | 30.0% | |
| AGCAAAATGTATTCTACTTG+GGG | - | chr8.2:70003519-70003538 | MS.gene85984:intron | 30.0% | |
| ATATTAAGTGGAGTCATTAG+AGG | - | chr8.2:70004235-70004254 | MS.gene85984:CDS | 30.0% | |
| CAGCAAAATGTATTCTACTT+GGG | - | chr8.2:70003518-70003537 | MS.gene85984:intron | 30.0% | |
| CCAAACAGCAAAATTCATAT+TGG | + | chr8.2:70002396-70002415 | None:intergenic | 30.0% | |
| CCTGTCAATTTATAGAGTTA+AGG | - | chr8.2:70002980-70002999 | MS.gene85984:intron | 30.0% | |
| CCTTAACTCTATAAATTGAC+AGG | + | chr8.2:70002983-70003002 | None:intergenic | 30.0% | |
| CGCTACAAACTAAGAAAATA+TGG | - | chr8.2:70004466-70004485 | MS.gene85984:intron | 30.0% | |
| CTGTATAAAACCAGAGTTAA+GGG | + | chr8.2:70004068-70004087 | None:intergenic | 30.0% | |
| GAAAACAAGCTTATGAAACA+TGG | + | chr8.2:70003207-70003226 | None:intergenic | 30.0% | |
| GAGATAGATGAACAAATAGT+TGG | + | chr8.2:70003794-70003813 | None:intergenic | 30.0% | |
| GGTTTATCTATGTAAGGAAA+GGG | - | chr8.2:70004552-70004571 | MS.gene85984:intron | 30.0% | |
| TACAATTACACACCATAACA+TGG | + | chr8.2:70002354-70002373 | None:intergenic | 30.0% | |
| TACTCTTATCAGTTTGTAGA+TGG | - | chr8.2:70003482-70003501 | MS.gene85984:intron | 30.0% | |
| TATGCATTAGAAATTGCTCT+TGG | - | chr8.2:70001945-70001964 | MS.gene85984:intron | 30.0% | |
| TCAAAATGACTGATAGGTTA+CGG | - | chr8.2:70003104-70003123 | MS.gene85984:intron | 30.0% | |
| TCAGCAAAATGTATTCTACT+TGG | - | chr8.2:70003517-70003536 | MS.gene85984:intron | 30.0% | |
| TGAACAAAAGCTTAGTTAGT+TGG | - | chr8.2:70002918-70002937 | MS.gene85984:intron | 30.0% | |
| TGCTAGCACTAAATTTATTC+TGG | - | chr8.2:70003623-70003642 | MS.gene85984:intron | 30.0% | |
| TGGTTTATCTATGTAAGGAA+AGG | - | chr8.2:70004551-70004570 | MS.gene85984:intron | 30.0% | |
| TGTTCATCTATCTCAGTTAT+TGG | - | chr8.2:70003800-70003819 | MS.gene85984:intron | 30.0% | |
| TTGGACTTATAACTTATAGG+TGG | + | chr8.2:70003752-70003771 | None:intergenic | 30.0% | |
| TTTAGAAAGAGAGTTTCAGA+CGG | + | chr8.2:70002246-70002265 | None:intergenic | 30.0% | |
| ! | ATATGTACTGACCATTATGT+CGG | + | chr8.2:70003656-70003675 | None:intergenic | 30.0% |
| ! | ATTTTTCTTGGAGGAAAATG+AGG | - | chr8.2:70004733-70004752 | MS.gene85984:CDS | 30.0% |
| ! | GACATGTTGTTGTATTGTTT+TGG | - | chr8.2:70004147-70004166 | MS.gene85984:intron | 30.0% |
| ! | GGTATGACTTTTACAATAGT+GGG | - | chr8.2:70003948-70003967 | MS.gene85984:intron | 30.0% |
| ! | TATGATTGGTTCTTTGCTTA+AGG | - | chr8.2:70002755-70002774 | MS.gene85984:intron | 30.0% |
| ! | TGGTATGACTTTTACAATAG+TGG | - | chr8.2:70003947-70003966 | MS.gene85984:intron | 30.0% |
| ! | TTTGGTTTCTTTAGATGCTT+GGG | - | chr8.2:70002543-70002562 | MS.gene85984:CDS | 30.0% |
| !! | AAGTGAAGCATTTTGTCAAA+TGG | - | chr8.2:70003181-70003200 | MS.gene85984:intron | 30.0% |
| !! | ATTTTCAGGGGTTATAACAT+TGG | - | chr8.2:70002421-70002440 | MS.gene85984:intron | 30.0% |
| !!! | ATGTTGTTGTATTGTTTTGG+AGG | - | chr8.2:70004150-70004169 | MS.gene85984:intron | 30.0% |
| !!! | CCAATATGAATTTTGCTGTT+TGG | - | chr8.2:70002393-70002412 | MS.gene85984:intron | 30.0% |
| !!! | GGATTTTTAGTTCCATGTTA+TGG | - | chr8.2:70002339-70002358 | MS.gene85984:intron | 30.0% |
| !!! | TATGAATTTTGCTGTTTGGT+TGG | - | chr8.2:70002397-70002416 | MS.gene85984:intron | 30.0% |
| !!! | TTACCTCATTTTTTTTGTGG+TGG | - | chr8.2:70004292-70004311 | MS.gene85984:intron | 30.0% |
| AACACAAATGAAAAACAGCC+TGG | - | chr8.2:70003560-70003579 | MS.gene85984:intron | 35.0% | |
| ACTGTTTACTCTGACATATG+GGG | - | chr8.2:70001985-70002004 | MS.gene85984:intron | 35.0% | |
| ACTTCATTCATTGCTACGAA+AGG | + | chr8.2:70004669-70004688 | None:intergenic | 35.0% | |
| AGCTCAACAAAATCTACCAA+AGG | + | chr8.2:70004181-70004200 | None:intergenic | 35.0% | |
| CACTACTGCAACATATTAAG+TGG | - | chr8.2:70004223-70004242 | MS.gene85984:CDS | 35.0% | |
| CCTGTATAAAACCAGAGTTA+AGG | + | chr8.2:70004069-70004088 | None:intergenic | 35.0% | |
| CTTCATTCATTGCTACGAAA+GGG | + | chr8.2:70004668-70004687 | None:intergenic | 35.0% | |
| GAACTGTTTACTCTGACATA+TGG | - | chr8.2:70001983-70002002 | MS.gene85984:intron | 35.0% | |
| TAGTTGGTTAGGTTATGATG+TGG | - | chr8.2:70002934-70002953 | MS.gene85984:intron | 35.0% | |
| TATAGGTGGTCAGATTAGAA+AGG | + | chr8.2:70003738-70003757 | None:intergenic | 35.0% | |
| TCCTTATATGGATACTCTTC+TGG | + | chr8.2:70004921-70004940 | None:intergenic | 35.0% | |
| TCGAAGTTAAAACACGCTTT+CGG | + | chr8.2:70002805-70002824 | None:intergenic | 35.0% | |
| TGAGGAGTGAAGATAAACTT+TGG | + | chr8.2:70003771-70003790 | None:intergenic | 35.0% | |
| TGATAAAGGCTGTGTAGAAA+TGG | - | chr8.2:70002594-70002613 | MS.gene85984:CDS | 35.0% | |
| TTATAGAGTTAAGGACCTCT+GGG | - | chr8.2:70002989-70003008 | MS.gene85984:intron | 35.0% | |
| TTCATTCATTGCTACGAAAG+GGG | + | chr8.2:70004667-70004686 | None:intergenic | 35.0% | |
| TTTATAGAGTTAAGGACCTC+TGG | - | chr8.2:70002988-70003007 | MS.gene85984:intron | 35.0% | |
| ! | AGATGAACAAATAGTTGGTG+AGG | + | chr8.2:70003789-70003808 | None:intergenic | 35.0% |
| ! | GTTTGGTTTCTTTAGATGCT+TGG | - | chr8.2:70002542-70002561 | MS.gene85984:CDS | 35.0% |
| ! | TATGTACTGACCATTATGTC+GGG | + | chr8.2:70003655-70003674 | None:intergenic | 35.0% |
| !! | CTGTTTGGTTGGTATTTTCA+GGG | - | chr8.2:70002408-70002427 | MS.gene85984:intron | 35.0% |
| !! | GTTGGTTTGAAAATGTTCCT+TGG | - | chr8.2:70004088-70004107 | MS.gene85984:intron | 35.0% |
| !! | TCCAGAAGAGTATCCATATA+AGG | - | chr8.2:70004917-70004936 | MS.gene85984:CDS | 35.0% |
| !! | TGTTTGGTTGGTATTTTCAG+GGG | - | chr8.2:70002409-70002428 | MS.gene85984:intron | 35.0% |
| !! | TTGTGTTGATTTCAGAGAGA+CGG | - | chr8.2:70002489-70002508 | MS.gene85984:CDS | 35.0% |
| !!! | AACTCTGGTTTTATACAGGT+TGG | - | chr8.2:70004070-70004089 | MS.gene85984:intron | 35.0% |
| !!! | CCTTAACTCTGGTTTTATAC+AGG | - | chr8.2:70004066-70004085 | MS.gene85984:intron | 35.0% |
| !!! | CTCATTTTTTTTGTGGTGGT+CGG | - | chr8.2:70004296-70004315 | MS.gene85984:intron | 35.0% |
| !!! | TCATTTTTTTTGTGGTGGTC+GGG | - | chr8.2:70004297-70004316 | MS.gene85984:intron | 35.0% |
| !!! | TGTTTTGGAGGATAATCCTT+TGG | - | chr8.2:70004162-70004181 | MS.gene85984:intron | 35.0% |
| ACAACAACAATCTCTAAGCC+AGG | + | chr8.2:70003581-70003600 | None:intergenic | 40.0% | |
| ACACAGCCTTTATCACAATG+AGG | + | chr8.2:70002589-70002608 | None:intergenic | 40.0% | |
| ACGTTGTAGGTGGTTATAGT+TGG | - | chr8.2:70003877-70003896 | MS.gene85984:intron | 40.0% | |
| ACTTCTGATCAAGGCATGTT+TGG | - | chr8.2:70002103-70002122 | MS.gene85984:intron | 40.0% | |
| ATGTGCTGCAAAAGATTGCA+TGG | + | chr8.2:70004763-70004782 | None:intergenic | 40.0% | |
| ATTGCTTACAGATCTGGAAG+AGG | - | chr8.2:70002021-70002040 | MS.gene85984:intron | 40.0% | |
| CAGTGTAACCCAACTATCTA+AGG | + | chr8.2:70003130-70003149 | None:intergenic | 40.0% | |
| CATTAGAGGAGCCTTAGATA+TGG | - | chr8.2:70004249-70004268 | MS.gene85984:CDS | 40.0% | |
| CGACCACCACAAAAAAAATG+AGG | + | chr8.2:70004298-70004317 | None:intergenic | 40.0% | |
| CTTGTACATTCACACTACTC+AGG | - | chr8.2:70004806-70004825 | MS.gene85984:intron | 40.0% | |
| TAGATTTCCTTGCACGTTGT+AGG | - | chr8.2:70003864-70003883 | MS.gene85984:intron | 40.0% | |
| TCAGATAATATTCGAGTGCG+CGG | - | chr8.2:70002729-70002748 | MS.gene85984:intron | 40.0% | |
| TGACCAATTGGAATGCTGAA+GGG | - | chr8.2:70004125-70004144 | MS.gene85984:intron | 40.0% | |
| TTACTGCATCTGTGACCAAT+TGG | - | chr8.2:70004113-70004132 | MS.gene85984:intron | 40.0% | |
| TTGGTTAGGTTATGATGTGG+AGG | - | chr8.2:70002937-70002956 | MS.gene85984:intron | 40.0% | |
| !! | GCTGTTTGGTTGGTATTTTC+AGG | - | chr8.2:70002407-70002426 | MS.gene85984:intron | 40.0% |
| !!! | CATTTTTTTTGTGGTGGTCG+GGG | - | chr8.2:70004298-70004317 | MS.gene85984:intron | 40.0% |
| AATATTGCATCGCCAGATCG+AGG | + | chr8.2:70001806-70001825 | None:intergenic | 45.0% | |
| AGGTTACGGCCTTAGATAGT+TGG | - | chr8.2:70003118-70003137 | MS.gene85984:intron | 45.0% | |
| ATAACCACCTACAACGTGCA+AGG | + | chr8.2:70003874-70003893 | None:intergenic | 45.0% | |
| ATTTCCTTGCACGTTGTAGG+TGG | - | chr8.2:70003867-70003886 | MS.gene85984:intron | 45.0% | |
| CAAGCAAATTAAGGGGACAC+TGG | + | chr8.2:70002654-70002673 | None:intergenic | 45.0% | |
| CACTACTCAGGTGTCAATGA+AGG | - | chr8.2:70004818-70004837 | MS.gene85984:intron | 45.0% | |
| CATTTGACTAGATGCACGAG+AGG | - | chr8.2:70003422-70003441 | MS.gene85984:intron | 45.0% | |
| CCACAGACTAAACGAACAAG+CGG | + | chr8.2:70002625-70002644 | None:intergenic | 45.0% | |
| GAGAAGATGACCCTTAACTC+TGG | - | chr8.2:70004055-70004074 | MS.gene85984:intron | 45.0% | |
| GAGCTTCCTGACACTTATCA+AGG | - | chr8.2:70004196-70004215 | MS.gene85984:intron | 45.0% | |
| GCGTCAATTGCTTACAGATC+TGG | - | chr8.2:70002015-70002034 | MS.gene85984:intron | 45.0% | |
| GGTTACGGCCTTAGATAGTT+GGG | - | chr8.2:70003119-70003138 | MS.gene85984:intron | 45.0% | |
| GTCTGACGTGTGTTAATGTC+TGG | - | chr8.2:70002127-70002146 | MS.gene85984:intron | 45.0% | |
| GTGACCAATTGGAATGCTGA+AGG | - | chr8.2:70004124-70004143 | MS.gene85984:intron | 45.0% | |
| GTTTCAGACGGATACAGACA+TGG | + | chr8.2:70002234-70002253 | None:intergenic | 45.0% | |
| TATAGGTCCCCAAACTTCGA+TGG | + | chr8.2:70003031-70003050 | None:intergenic | 45.0% | |
| TCACAGATGCAGTAACACCA+AGG | + | chr8.2:70004108-70004127 | None:intergenic | 45.0% | |
| TGCAGACCTTGATAAGTGTC+AGG | + | chr8.2:70004205-70004224 | None:intergenic | 45.0% | |
| TGGGGACCTATACTGTGATA+AGG | - | chr8.2:70003039-70003058 | MS.gene85984:intron | 45.0% | |
| TGTCCCTTCAGCATTCCAAT+TGG | + | chr8.2:70004131-70004150 | None:intergenic | 45.0% | |
| ! | CATGCCTTGATCAGAAGTGT+CGG | + | chr8.2:70002101-70002120 | None:intergenic | 45.0% |
| ! | TGGGCTATGTGATGCTACTT+GGG | - | chr8.2:70003967-70003986 | MS.gene85984:intron | 45.0% |
| AGGTGCAGACCATCGAAGTT+TGG | - | chr8.2:70003019-70003038 | MS.gene85984:intron | 50.0% | |
| CAATGAAGGCTGAGGTCACT+TGG | - | chr8.2:70004832-70004851 | MS.gene85984:intron | 50.0% | |
| CCGCTTGTTCGTTTAGTCTG+TGG | - | chr8.2:70002622-70002641 | MS.gene85984:CDS | 50.0% | |
| GGTGCAGACCATCGAAGTTT+GGG | - | chr8.2:70003020-70003039 | MS.gene85984:intron | 50.0% | |
| GTGCAGACCATCGAAGTTTG+GGG | - | chr8.2:70003021-70003040 | MS.gene85984:intron | 50.0% | |
| TCAGGTGTCAATGAAGGCTG+AGG | - | chr8.2:70004824-70004843 | MS.gene85984:intron | 50.0% | |
| TGATTTCAGAGAGACGGCTG+AGG | - | chr8.2:70002495-70002514 | MS.gene85984:CDS | 50.0% | |
| TTGACTAGATGCACGAGAGG+AGG | - | chr8.2:70003425-70003444 | MS.gene85984:intron | 50.0% | |
| ! | AGTTAAGGACCTCTGGGAGT+TGG | - | chr8.2:70002995-70003014 | MS.gene85984:intron | 50.0% |
| ! | CTGGTTTGAGCCCGACATAA+TGG | - | chr8.2:70003642-70003661 | MS.gene85984:intron | 50.0% |
| ! | GTGGGCTATGTGATGCTACT+TGG | - | chr8.2:70003966-70003985 | MS.gene85984:intron | 50.0% |
| ! | GTTAAGGACCTCTGGGAGTT+GGG | - | chr8.2:70002996-70003015 | MS.gene85984:intron | 50.0% |
| !! | AGCACCGACACTTCTGATCA+AGG | - | chr8.2:70002094-70002113 | MS.gene85984:intron | 50.0% |
| ATACCAACTGAGCGCTCACG+AGG | - | chr8.2:70004358-70004377 | MS.gene85984:intron | 55.0% | |
| GACGGCTGAGGTGATTGCAA+AGG | - | chr8.2:70002507-70002526 | MS.gene85984:CDS | 55.0% | |
| ! | TCGTGAGCGCTCAGTTGGTA+TGG | + | chr8.2:70004359-70004378 | None:intergenic | 55.0% |
| CGAGTGCGCGGCAGTATGAT+TGG | - | chr8.2:70002741-70002760 | MS.gene85984:intron | 60.0% | |
| CGCCAGATCGAGGAGCAACA+GGG | + | chr8.2:70001796-70001815 | None:intergenic | 60.0% | |
| GCCAGATCGAGGAGCAACAG+GGG | + | chr8.2:70001795-70001814 | None:intergenic | 60.0% | |
| TCGCCAGATCGAGGAGCAAC+AGG | + | chr8.2:70001797-70001816 | None:intergenic | 60.0% | |
| TGGCTACATGACGCGCTTCG+AGG | - | chr8.2:70004852-70004871 | MS.gene85984:intron | 60.0% | |
| TGTCCTCGTGAGCGCTCAGT+TGG | + | chr8.2:70004364-70004383 | None:intergenic | 60.0% | |
| ! | AAGGACCTCTGGGAGTTGGG+AGG | - | chr8.2:70002999-70003018 | MS.gene85984:intron | 60.0% |
| CTGCACCTCCCAACTCCCAG+AGG | + | chr8.2:70003007-70003026 | None:intergenic | 65.0% | |
| GCCCCTGTTGCTCCTCGATC+TGG | - | chr8.2:70001791-70001810 | MS.gene85984:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 70001788 | 70004950 | 70001788 | ID=MS.gene85984 |
| chr8.2 | mRNA | 70001788 | 70004950 | 70001788 | ID=MS.gene85984.t1;Parent=MS.gene85984 |
| chr8.2 | exon | 70004894 | 70004950 | 70004894 | ID=MS.gene85984.t1.exon1;Parent=MS.gene85984.t1 |
| chr8.2 | CDS | 70004894 | 70004950 | 70004894 | ID=cds.MS.gene85984.t1;Parent=MS.gene85984.t1 |
| chr8.2 | exon | 70004664 | 70004761 | 70004664 | ID=MS.gene85984.t1.exon2;Parent=MS.gene85984.t1 |
| chr8.2 | CDS | 70004664 | 70004761 | 70004664 | ID=cds.MS.gene85984.t1;Parent=MS.gene85984.t1 |
| chr8.2 | exon | 70004210 | 70004309 | 70004210 | ID=MS.gene85984.t1.exon3;Parent=MS.gene85984.t1 |
| chr8.2 | CDS | 70004210 | 70004309 | 70004210 | ID=cds.MS.gene85984.t1;Parent=MS.gene85984.t1 |
| chr8.2 | exon | 70002468 | 70002650 | 70002468 | ID=MS.gene85984.t1.exon4;Parent=MS.gene85984.t1 |
| chr8.2 | CDS | 70002468 | 70002650 | 70002468 | ID=cds.MS.gene85984.t1;Parent=MS.gene85984.t1 |
| chr8.2 | exon | 70001788 | 70001910 | 70001788 | ID=MS.gene85984.t1.exon5;Parent=MS.gene85984.t1 |
| chr8.2 | CDS | 70001788 | 70001910 | 70001788 | ID=cds.MS.gene85984.t1;Parent=MS.gene85984.t1 |
| Gene Sequence |
| Protein sequence |
