Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86064.t1 | XP_003618594.1 | 97.8 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 1.20E-98 | 369 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86064.t1 | Q39131 | 54.3 | 162 | 72 | 1 | 20 | 179 | 11 | 172 | 1.0e-48 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86064.t1 | Q2HW94 | 97.8 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 8.9e-99 | 369.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene86064 | 0.874233 | 7.92E-68 | -1.69E-46 |
| MS.gene050838 | MS.gene86064 | 0.872034 | 4.33E-67 | -1.69E-46 |
| MS.gene051850 | MS.gene86064 | 0.87693 | 9.44E-69 | -1.69E-46 |
| MS.gene051885 | MS.gene86064 | 0.855341 | 6.73E-62 | -1.69E-46 |
| MS.gene052133 | MS.gene86064 | 0.809548 | 1.79E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene86064 | 0.814815 | 1.27E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene86064 | 0.859382 | 4.30E-63 | -1.69E-46 |
| MS.gene053144 | MS.gene86064 | 0.82518 | 5.39E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene86064 | 0.818227 | 2.19E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene86064 | 0.811631 | 6.36E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene86064 | 0.824581 | 7.47E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene86064 | 0.829536 | 4.87E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene86064 | -0.824916 | 6.23E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene86064 | -0.847673 | 9.96E-60 | -1.69E-46 |
| MS.gene056432 | MS.gene86064 | 0.825389 | 4.81E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene86064 | 0.805485 | 1.30E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene86064 | 0.806343 | 8.62E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene86064 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene058720 | MS.gene86064 | 0.831988 | 1.22E-55 | -1.69E-46 |
| MS.gene05880 | MS.gene86064 | 0.807239 | 5.57E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene86064 | 0.813254 | 2.81E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene86064 | 0.820384 | 7.06E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene86064 | 0.812011 | 5.26E-51 | -1.69E-46 |
| MS.gene060888 | MS.gene86064 | 0.812363 | 4.40E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene86064 | 0.803778 | 2.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86064.t1 | MTR_6g013420 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 5.15e-132 | 367 |
| MS.gene86064.t1 | MTR_6g013200 | 65.190 | 158 | 45 | 2 | 1 | 151 | 1 | 155 | 4.95e-71 | 213 |
| MS.gene86064.t1 | MTR_3g117110 | 45.522 | 134 | 68 | 3 | 41 | 172 | 34 | 164 | 9.92e-35 | 120 |
| MS.gene86064.t1 | MTR_5g088180 | 50.420 | 119 | 57 | 2 | 35 | 151 | 26 | 144 | 4.33e-34 | 118 |
| MS.gene86064.t1 | MTR_6g013170 | 43.030 | 165 | 85 | 4 | 17 | 178 | 9 | 167 | 1.46e-33 | 117 |
| MS.gene86064.t1 | MTR_5g088170 | 46.324 | 136 | 68 | 3 | 35 | 168 | 13 | 145 | 4.22e-33 | 115 |
| MS.gene86064.t1 | MTR_5g088000 | 45.385 | 130 | 65 | 2 | 26 | 149 | 4 | 133 | 1.76e-32 | 113 |
| MS.gene86064.t1 | MTR_4g007250 | 39.416 | 137 | 74 | 2 | 33 | 162 | 24 | 158 | 1.39e-25 | 97.1 |
| MS.gene86064.t1 | MTR_5g087970 | 37.589 | 141 | 82 | 3 | 20 | 154 | 11 | 151 | 8.29e-22 | 87.4 |
| MS.gene86064.t1 | MTR_1g090190 | 38.931 | 131 | 68 | 4 | 34 | 155 | 19 | 146 | 8.50e-20 | 82.0 |
| MS.gene86064.t1 | MTR_2g088990 | 35.570 | 149 | 86 | 7 | 18 | 163 | 6 | 147 | 1.18e-19 | 82.8 |
| MS.gene86064.t1 | MTR_3g099980 | 37.500 | 120 | 70 | 4 | 20 | 136 | 7 | 124 | 3.66e-18 | 79.0 |
| MS.gene86064.t1 | MTR_3g099680 | 36.667 | 120 | 71 | 4 | 20 | 136 | 7 | 124 | 1.00e-17 | 77.8 |
| MS.gene86064.t1 | MTR_8g007035 | 40.351 | 114 | 62 | 3 | 24 | 134 | 10 | 120 | 2.43e-17 | 76.3 |
| MS.gene86064.t1 | MTR_2g090575 | 36.134 | 119 | 71 | 3 | 19 | 134 | 6 | 122 | 4.70e-16 | 74.7 |
| MS.gene86064.t1 | MTR_4g077787 | 29.801 | 151 | 93 | 5 | 8 | 151 | 4 | 148 | 7.48e-16 | 72.0 |
| MS.gene86064.t1 | MTR_2g101300 | 39.024 | 123 | 63 | 5 | 34 | 149 | 23 | 140 | 7.84e-16 | 72.0 |
| MS.gene86064.t1 | MTR_4g124280 | 39.048 | 105 | 57 | 3 | 35 | 134 | 22 | 124 | 9.16e-16 | 72.8 |
| MS.gene86064.t1 | MTR_3g099580 | 36.441 | 118 | 70 | 4 | 20 | 135 | 7 | 121 | 2.14e-15 | 70.9 |
| MS.gene86064.t1 | MTR_2g025580 | 30.370 | 135 | 90 | 3 | 18 | 150 | 7 | 139 | 2.64e-15 | 70.1 |
| MS.gene86064.t1 | MTR_3g099570 | 34.375 | 128 | 79 | 4 | 20 | 145 | 7 | 131 | 3.19e-15 | 70.1 |
| MS.gene86064.t1 | MTR_3g099540 | 34.921 | 126 | 74 | 5 | 11 | 135 | 4 | 122 | 3.98e-15 | 68.9 |
| MS.gene86064.t1 | MTR_7g086160 | 32.000 | 125 | 80 | 4 | 13 | 134 | 1 | 123 | 4.00e-15 | 69.3 |
| MS.gene86064.t1 | MTR_5g006040 | 30.282 | 142 | 89 | 5 | 16 | 154 | 7 | 141 | 4.48e-15 | 69.7 |
| MS.gene86064.t1 | MTR_4g114870 | 41.176 | 102 | 53 | 3 | 38 | 134 | 191 | 290 | 4.58e-15 | 72.0 |
| MS.gene86064.t1 | MTR_4g114870 | 34.532 | 139 | 84 | 3 | 17 | 150 | 8 | 144 | 5.46e-15 | 72.0 |
| MS.gene86064.t1 | MTR_8g463180 | 36.691 | 139 | 78 | 6 | 17 | 149 | 1 | 135 | 5.90e-15 | 71.2 |
| MS.gene86064.t1 | MTR_7g086140 | 32.258 | 124 | 80 | 3 | 13 | 134 | 1 | 122 | 6.42e-15 | 68.9 |
| MS.gene86064.t1 | MTR_7g086190 | 32.258 | 124 | 80 | 3 | 13 | 134 | 1 | 122 | 6.42e-15 | 68.9 |
| MS.gene86064.t1 | MTR_1g112700 | 27.711 | 166 | 106 | 4 | 16 | 169 | 11 | 174 | 6.73e-15 | 69.3 |
| MS.gene86064.t1 | MTR_8g007020 | 38.261 | 115 | 63 | 5 | 24 | 134 | 10 | 120 | 1.59e-14 | 68.6 |
| MS.gene86064.t1 | MTR_1g105130 | 31.624 | 117 | 76 | 3 | 20 | 134 | 7 | 121 | 4.68e-14 | 66.6 |
| MS.gene86064.t1 | MTR_1g105120 | 31.624 | 117 | 76 | 3 | 20 | 134 | 7 | 121 | 4.68e-14 | 66.6 |
| MS.gene86064.t1 | MTR_1g104800 | 32.143 | 112 | 71 | 3 | 26 | 134 | 13 | 122 | 1.44e-13 | 65.9 |
| MS.gene86064.t1 | MTR_4g081100 | 33.333 | 126 | 77 | 3 | 14 | 134 | 8 | 131 | 2.41e-13 | 65.9 |
| MS.gene86064.t1 | MTR_4g078410 | 32.394 | 142 | 82 | 4 | 20 | 149 | 7 | 146 | 2.86e-13 | 65.1 |
| MS.gene86064.t1 | MTR_7g086230 | 32.231 | 121 | 79 | 2 | 16 | 135 | 4 | 122 | 3.50e-13 | 64.7 |
| MS.gene86064.t1 | MTR_3g105930 | 31.544 | 149 | 86 | 5 | 35 | 169 | 24 | 170 | 6.24e-13 | 63.9 |
| MS.gene86064.t1 | MTR_6g023760 | 35.238 | 105 | 65 | 2 | 33 | 136 | 21 | 123 | 6.33e-13 | 63.9 |
| MS.gene86064.t1 | MTR_8g094990 | 36.585 | 123 | 66 | 4 | 19 | 134 | 6 | 123 | 8.88e-13 | 65.1 |
| MS.gene86064.t1 | MTR_8g095013 | 34.167 | 120 | 73 | 3 | 19 | 134 | 6 | 123 | 1.02e-12 | 65.1 |
| MS.gene86064.t1 | MTR_6g022170 | 35.714 | 112 | 62 | 4 | 29 | 134 | 25 | 132 | 1.86e-12 | 62.4 |
| MS.gene86064.t1 | MTR_7g086220 | 30.000 | 100 | 68 | 1 | 21 | 120 | 8 | 105 | 2.00e-12 | 62.4 |
| MS.gene86064.t1 | MTR_7g086280 | 31.405 | 121 | 80 | 2 | 16 | 135 | 4 | 122 | 2.59e-12 | 62.4 |
| MS.gene86064.t1 | MTR_8g089110 | 34.188 | 117 | 72 | 3 | 16 | 132 | 7 | 118 | 2.79e-12 | 60.8 |
| MS.gene86064.t1 | MTR_3g089035 | 35.000 | 100 | 61 | 2 | 33 | 132 | 28 | 123 | 3.15e-12 | 60.8 |
| MS.gene86064.t1 | MTR_1g014120 | 31.343 | 134 | 77 | 5 | 10 | 137 | 4 | 128 | 3.99e-12 | 62.0 |
| MS.gene86064.t1 | MTR_2g079030 | 33.582 | 134 | 76 | 6 | 27 | 149 | 11 | 142 | 4.43e-11 | 60.8 |
| MS.gene86064.t1 | MTR_4g130780 | 31.655 | 139 | 78 | 6 | 14 | 139 | 5 | 139 | 4.45e-11 | 59.3 |
| MS.gene86064.t1 | MTR_7g086090 | 31.200 | 125 | 81 | 3 | 16 | 139 | 4 | 124 | 6.09e-11 | 59.7 |
| MS.gene86064.t1 | MTR_8g088830 | 33.981 | 103 | 63 | 3 | 31 | 132 | 21 | 119 | 7.65e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86064.t1 | AT5G15350 | 55.215 | 163 | 69 | 3 | 20 | 179 | 11 | 172 | 1.50e-63 | 193 |
| MS.gene86064.t1 | AT4G12880 | 56.034 | 116 | 51 | 0 | 20 | 135 | 11 | 126 | 3.01e-45 | 146 |
| MS.gene86064.t1 | AT3G01070 | 56.962 | 158 | 60 | 5 | 18 | 167 | 4 | 161 | 2.48e-39 | 132 |
| MS.gene86064.t1 | AT2G27035 | 42.063 | 126 | 70 | 2 | 26 | 151 | 17 | 139 | 5.40e-32 | 113 |
| MS.gene86064.t1 | AT4G12880 | 59.420 | 69 | 28 | 0 | 67 | 135 | 20 | 88 | 6.91e-24 | 90.5 |
| MS.gene86064.t1 | AT3G20570 | 40.164 | 122 | 64 | 4 | 20 | 134 | 9 | 128 | 4.71e-18 | 78.2 |
| MS.gene86064.t1 | AT2G25060 | 35.043 | 117 | 68 | 4 | 24 | 134 | 17 | 131 | 2.69e-17 | 75.9 |
| MS.gene86064.t1 | AT5G26330 | 35.398 | 113 | 68 | 3 | 25 | 134 | 11 | 121 | 4.14e-16 | 72.8 |
| MS.gene86064.t1 | AT2G32300 | 33.051 | 118 | 76 | 2 | 18 | 134 | 6 | 121 | 8.20e-16 | 73.2 |
| MS.gene86064.t1 | AT2G32300 | 30.534 | 131 | 88 | 2 | 5 | 134 | 23 | 151 | 1.35e-15 | 73.2 |
| MS.gene86064.t1 | AT4G32490 | 34.711 | 121 | 72 | 4 | 17 | 134 | 12 | 128 | 1.37e-15 | 72.0 |
| MS.gene86064.t1 | AT3G17675 | 33.333 | 123 | 75 | 3 | 15 | 134 | 9 | 127 | 2.27e-15 | 69.3 |
| MS.gene86064.t1 | AT5G07475 | 32.308 | 130 | 82 | 4 | 27 | 153 | 19 | 145 | 2.27e-15 | 70.9 |
| MS.gene86064.t1 | AT5G53870 | 33.548 | 155 | 93 | 5 | 19 | 167 | 13 | 163 | 6.60e-15 | 71.6 |
| MS.gene86064.t1 | AT5G53870 | 33.548 | 155 | 93 | 5 | 19 | 167 | 13 | 163 | 9.23e-15 | 71.2 |
| MS.gene86064.t1 | AT1G17800 | 36.364 | 99 | 60 | 2 | 36 | 133 | 39 | 135 | 3.76e-14 | 66.6 |
| MS.gene86064.t1 | AT4G27520 | 36.441 | 118 | 68 | 4 | 20 | 134 | 15 | 128 | 3.94e-14 | 69.3 |
| MS.gene86064.t1 | AT4G28365 | 37.624 | 101 | 58 | 3 | 37 | 134 | 28 | 126 | 4.47e-14 | 67.4 |
| MS.gene86064.t1 | AT2G23990 | 37.500 | 120 | 65 | 5 | 40 | 152 | 29 | 145 | 8.16e-14 | 67.0 |
| MS.gene86064.t1 | AT2G31050 | 38.261 | 115 | 67 | 3 | 33 | 145 | 24 | 136 | 2.80e-13 | 65.5 |
| MS.gene86064.t1 | AT4G31840 | 32.283 | 127 | 77 | 5 | 14 | 134 | 4 | 127 | 9.89e-13 | 63.5 |
| MS.gene86064.t1 | AT3G27200 | 30.508 | 118 | 79 | 2 | 18 | 134 | 6 | 121 | 1.64e-12 | 62.8 |
| MS.gene86064.t1 | AT3G60280 | 37.736 | 106 | 62 | 3 | 30 | 134 | 16 | 118 | 3.29e-12 | 62.8 |
| MS.gene86064.t1 | AT2G26720 | 35.577 | 104 | 63 | 3 | 33 | 134 | 24 | 125 | 4.63e-12 | 62.4 |
| MS.gene86064.t1 | AT5G14345 | 33.582 | 134 | 78 | 5 | 27 | 153 | 5 | 134 | 5.35e-12 | 60.8 |
| MS.gene86064.t1 | AT4G30590 | 35.922 | 103 | 58 | 4 | 38 | 134 | 28 | 128 | 1.46e-11 | 60.5 |
| MS.gene86064.t1 | AT3G60270 | 35.577 | 104 | 65 | 2 | 31 | 134 | 19 | 120 | 1.70e-11 | 60.5 |
| MS.gene86064.t1 | AT2G02850 | 30.469 | 128 | 85 | 2 | 5 | 132 | 3 | 126 | 5.63e-11 | 57.8 |
Find 32 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTGCTACAAGGTTTA+TGG | 0.180309 | 6.3:-8442671 | MS.gene86064:CDS |
| GGGATTCATTCATTTATTTA+TGG | 0.202648 | 6.3:-8440504 | MS.gene86064:CDS |
| CAAATTTCAACTACACTACT+TGG | 0.337714 | 6.3:-8442624 | MS.gene86064:CDS |
| TCACTTCTAGCACATTCATT+TGG | 0.386132 | 6.3:+8440797 | None:intergenic |
| CAGATCATCCACTTCACAAT+TGG | 0.391448 | 6.3:-8440747 | MS.gene86064:CDS |
| GTTTATGGTTGGTGGTAGAA+TGG | 0.400420 | 6.3:-8442656 | MS.gene86064:CDS |
| ACAATGGTGTTTCTGTTACT+TGG | 0.406835 | 6.3:-8442721 | MS.gene86064:CDS |
| GCAACATTCCTTTCTTCTAA+AGG | 0.414486 | 6.3:-8440571 | MS.gene86064:CDS |
| AGCATTTCTACAATGGTGAT+TGG | 0.420256 | 6.3:-8442591 | MS.gene86064:CDS |
| AGATTTGTCCTTTAGAAGAA+AGG | 0.430408 | 6.3:+8440563 | None:intergenic |
| TGCCTATGGTTTCTGCTACA+AGG | 0.439834 | 6.3:-8442678 | MS.gene86064:CDS |
| CCACTTCACAATTGGACAAC+CGG | 0.443540 | 6.3:-8440739 | MS.gene86064:CDS |
| GCTACAAGGTTTATGGTTGG+TGG | 0.457164 | 6.3:-8442664 | MS.gene86064:CDS |
| TGTTCTTGTCATGTTGCCTA+TGG | 0.468041 | 6.3:-8442692 | MS.gene86064:CDS |
| TACTATTTCATCAGCGGCAA+AGG | 0.470534 | 6.3:-8440676 | MS.gene86064:CDS |
| TAATGGCGAGTCACGTTCAA+TGG | 0.474693 | 6.3:+8440697 | None:intergenic |
| CACAATTGGACAACCGGAGC+TGG | 0.479780 | 6.3:-8440733 | MS.gene86064:CDS |
| TTTATGGTTGGTGGTAGAAT+GGG | 0.481424 | 6.3:-8442655 | MS.gene86064:CDS |
| CAACTACACTACTTGGGCTA+AGG | 0.482312 | 6.3:-8442617 | MS.gene86064:CDS |
| AACGACATCTCTTCCAGCTC+CGG | 0.493793 | 6.3:+8440720 | None:intergenic |
| AGTAACAGAAACACCATTGT+TGG | 0.496883 | 6.3:+8442724 | None:intergenic |
| TCTGCTACAAGGTTTATGGT+TGG | 0.523527 | 6.3:-8442667 | MS.gene86064:CDS |
| TTCAACAATTTCACCAACAA+TGG | 0.536080 | 6.3:-8442737 | MS.gene86064:CDS |
| AAATTTCAACTACACTACTT+GGG | 0.538580 | 6.3:-8442623 | MS.gene86064:CDS |
| AACTACACTACTTGGGCTAA+GGG | 0.546247 | 6.3:-8442616 | MS.gene86064:CDS |
| TCCACCACCAAAAGCTGCAC+CGG | 0.564480 | 6.3:-8440605 | MS.gene86064:CDS |
| TGGTTGGTGGTAGAATGGGT+TGG | 0.565349 | 6.3:-8442651 | MS.gene86064:CDS |
| CGCCATTACTATTTCATCAG+CGG | 0.567316 | 6.3:-8440682 | MS.gene86064:CDS |
| TGCCGCTGATGAAATAGTAA+TGG | 0.603131 | 6.3:+8440680 | None:intergenic |
| AAGGGCAAGCATTTCTACAA+TGG | 0.634172 | 6.3:-8442598 | MS.gene86064:CDS |
| CCGGTTGTCCAATTGTGAAG+TGG | 0.638421 | 6.3:+8440739 | None:intergenic |
| AACCTTGTAGCAGAAACCAT+AGG | 0.652252 | 6.3:+8442676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATATATCAAACAATA+TGG | + | chr6.3:8442228-8442247 | None:intergenic | 10.0% |
| !!! | ATCATTAATTTGATATTTTA+TGG | - | chr6.3:8441096-8441115 | MS.gene86064:intron | 10.0% |
| !!! | TCATTTTCTTAAATTATTAA+TGG | + | chr6.3:8441621-8441640 | None:intergenic | 10.0% |
| !! | ACAAATTAATTAACTAGTTA+TGG | - | chr6.3:8441822-8441841 | MS.gene86064:intron | 15.0% |
| !! | ATAGTAAATAAACAATCAAA+AGG | + | chr6.3:8441339-8441358 | None:intergenic | 15.0% |
| !! | TAACAAAAAATGATAGAAAA+AGG | + | chr6.3:8441404-8441423 | None:intergenic | 15.0% |
| !!! | AATTAAACATTTTCTTCTTT+AGG | - | chr6.3:8442033-8442052 | MS.gene86064:intron | 15.0% |
| !!! | ATGCTTAATTTGATATTTTA+TGG | - | chr6.3:8440843-8440862 | MS.gene86064:intron | 15.0% |
| !!! | ATTAAACATTTTCTTCTTTA+GGG | - | chr6.3:8442034-8442053 | MS.gene86064:intron | 15.0% |
| !!! | ATTGGTTAATCTTAAATTTT+TGG | - | chr6.3:8441141-8441160 | MS.gene86064:intron | 15.0% |
| !!! | ATTTACTATTTTCTTTCAAT+AGG | - | chr6.3:8441350-8441369 | MS.gene86064:intron | 15.0% |
| !!! | TTGATATTTTATGGATTAAT+AGG | - | chr6.3:8441105-8441124 | MS.gene86064:intron | 15.0% |
| !!! | TTGGTTAATCTTAAATTTTT+GGG | - | chr6.3:8441142-8441161 | MS.gene86064:intron | 15.0% |
| !!! | TTTACTATTTTCTTTCAATA+GGG | - | chr6.3:8441351-8441370 | MS.gene86064:intron | 15.0% |
| !! | AAACTGAAAAAATGAAATCA+AGG | + | chr6.3:8442434-8442453 | None:intergenic | 20.0% |
| !! | GGGTTTATTTAATTAATCTT+AGG | - | chr6.3:8441028-8441047 | MS.gene86064:intron | 20.0% |
| !! | TTAAGACTATGACTAAAATT+AGG | + | chr6.3:8441996-8442015 | None:intergenic | 20.0% |
| !!! | AATCACCTTTTTTAACAAAT+AGG | + | chr6.3:8442060-8442079 | None:intergenic | 20.0% |
| !!! | TAGTTAATCTTAGATCTTTT+GGG | - | chr6.3:8440889-8440908 | MS.gene86064:intron | 20.0% |
| !!! | TGATTAATCTTAGATCTTTT+GGG | - | chr6.3:8441008-8441027 | MS.gene86064:intron | 20.0% |
| !!! | TGGATTATTTTACTTCATTT+TGG | + | chr6.3:8441870-8441889 | None:intergenic | 20.0% |
| !!! | TTACTATTTTCTTTCAATAG+GGG | - | chr6.3:8441352-8441371 | MS.gene86064:intron | 20.0% |
| !!! | TTAGTTAATCTTAGATCTTT+TGG | - | chr6.3:8440888-8440907 | MS.gene86064:intron | 20.0% |
| !!! | TTATGGACTAATTAGTAAAA+TGG | - | chr6.3:8440860-8440879 | MS.gene86064:intron | 20.0% |
| !!! | TTGATTAATCTTAGATCTTT+TGG | - | chr6.3:8441007-8441026 | MS.gene86064:intron | 20.0% |
| ! | AAATTTCAACTACACTACTT+GGG | - | chr6.3:8440644-8440663 | MS.gene86064:CDS | 25.0% |
| ! | AAGTAATGAAAGTCAACATT+TGG | + | chr6.3:8441941-8441960 | None:intergenic | 25.0% |
| ! | GGGATTCATTCATTTATTTA+TGG | - | chr6.3:8442763-8442782 | MS.gene86064:CDS | 25.0% |
| ! | TGGTTTATATGAAACAAGAA+AGG | + | chr6.3:8441504-8441523 | None:intergenic | 25.0% |
| !! | TTATGGATTAATAGGCAAAA+GGG | - | chr6.3:8441113-8441132 | MS.gene86064:intron | 25.0% |
| !! | TTGATATTTTCTTGACCAAT+AGG | - | chr6.3:8440961-8440980 | MS.gene86064:intron | 25.0% |
| !! | TTTATGGATTAATAGGCAAA+AGG | - | chr6.3:8441112-8441131 | MS.gene86064:intron | 25.0% |
| !! | TTTCAGTTTTTGTGTATGAT+AGG | - | chr6.3:8442445-8442464 | MS.gene86064:intron | 25.0% |
| !! | TTTGTGTACTTTGTTTAGAT+TGG | - | chr6.3:8440763-8440782 | MS.gene86064:CDS | 25.0% |
| !!! | ACTTCATTTTGGTTGAAATA+TGG | + | chr6.3:8441859-8441878 | None:intergenic | 25.0% |
| !!! | ATTTTGGTTGAAATATGGAT+GGG | + | chr6.3:8441854-8441873 | None:intergenic | 25.0% |
| !!! | TAAGCAAGTTTAGCTATTTT+AGG | - | chr6.3:8441754-8441773 | MS.gene86064:intron | 25.0% |
| !!! | TCTCTCTAAAATAGTTACTT+TGG | - | chr6.3:8440740-8440759 | MS.gene86064:CDS | 25.0% |
| !!! | TTAGATCTTTTGGGATTATT+TGG | - | chr6.3:8440898-8440917 | MS.gene86064:intron | 25.0% |
| AACAACAAGGAGAAAAAAGA+GGG | + | chr6.3:8441531-8441550 | None:intergenic | 30.0% | |
| AGTGTTCTTGAAGAATATTG+TGG | - | chr6.3:8441252-8441271 | MS.gene86064:intron | 30.0% | |
| CAAATTTCAACTACACTACT+TGG | - | chr6.3:8440643-8440662 | MS.gene86064:CDS | 30.0% | |
| TTCAACAATTTCACCAACAA+TGG | - | chr6.3:8440530-8440549 | MS.gene86064:CDS | 30.0% | |
| TTCATTTGCAAATTAAGCCA+TGG | + | chr6.3:8441908-8441927 | None:intergenic | 30.0% | |
| TTTACTTGTCCTTCTATGTT+TGG | - | chr6.3:8441717-8441736 | MS.gene86064:intron | 30.0% | |
| ! | AGATTTGTCCTTTAGAAGAA+AGG | + | chr6.3:8442707-8442726 | None:intergenic | 30.0% |
| ! | AGCTTTTTGTGTCAATTTCA+TGG | - | chr6.3:8441184-8441203 | MS.gene86064:intron | 30.0% |
| ! | ATTGAAACTCTTTTGCCTAT+TGG | + | chr6.3:8440979-8440998 | None:intergenic | 30.0% |
| ! | TAGGGCCTATTTGTTAAAAA+AGG | - | chr6.3:8442052-8442071 | MS.gene86064:intron | 30.0% |
| ! | TTTAAAACGCCAAACATAGA+AGG | + | chr6.3:8441729-8441748 | None:intergenic | 30.0% |
| !!! | ATGCCTATTGTTTTTGCTAT+TGG | - | chr6.3:8442732-8442751 | MS.gene86064:CDS | 30.0% |
| !!! | CATTTTGGTTGAAATATGGA+TGG | + | chr6.3:8441855-8441874 | None:intergenic | 30.0% |
| ACTCACAAGAGAATGTACTT+AGG | + | chr6.3:8442309-8442328 | None:intergenic | 35.0% | |
| AGCATTTCTACAATGGTGAT+TGG | - | chr6.3:8440676-8440695 | MS.gene86064:CDS | 35.0% | |
| AGTAACAGAAACACCATTGT+TGG | + | chr6.3:8440546-8440565 | None:intergenic | 35.0% | |
| ATAGGCAAAAGGGTTTGAAT+TGG | - | chr6.3:8441123-8441142 | MS.gene86064:intron | 35.0% | |
| ATTCTCAGATCCACAATTCT+TGG | - | chr6.3:8441435-8441454 | MS.gene86064:intron | 35.0% | |
| CAACAACAAGGAGAAAAAAG+AGG | + | chr6.3:8441532-8441551 | None:intergenic | 35.0% | |
| GCAACATTCCTTTCTTCTAA+AGG | - | chr6.3:8442696-8442715 | MS.gene86064:CDS | 35.0% | |
| GCACCAATAGCAAAAACAAT+AGG | + | chr6.3:8442738-8442757 | None:intergenic | 35.0% | |
| TAATCTTCCAAGCACTTTCA+TGG | + | chr6.3:8442360-8442379 | None:intergenic | 35.0% | |
| TCAAAAGAAGCCAAGAATTG+TGG | + | chr6.3:8441448-8441467 | None:intergenic | 35.0% | |
| TCACTTCTAGCACATTCATT+TGG | + | chr6.3:8442473-8442492 | None:intergenic | 35.0% | |
| ! | ACAATGGTGTTTCTGTTACT+TGG | - | chr6.3:8440546-8440565 | MS.gene86064:CDS | 35.0% |
| ! | AGGAGAAAAAAGAGGGATTT+TGG | + | chr6.3:8441524-8441543 | None:intergenic | 35.0% |
| ! | AGGTAGATTTTCAACACGAA+CGG | + | chr6.3:8442643-8442662 | None:intergenic | 35.0% |
| ! | GTCCAAAAGTGTAGATTTGA+GGG | - | chr6.3:8441283-8441302 | MS.gene86064:intron | 35.0% |
| ! | TGTCCAAAAGTGTAGATTTG+AGG | - | chr6.3:8441282-8441301 | MS.gene86064:intron | 35.0% |
| !! | TTTATGGTTGGTGGTAGAAT+GGG | - | chr6.3:8440612-8440631 | MS.gene86064:CDS | 35.0% |
| !!! | AATGTTGCACTAGCTTTTTC+CGG | + | chr6.3:8442684-8442703 | None:intergenic | 35.0% |
| AACCTTGTAGCAGAAACCAT+AGG | + | chr6.3:8440594-8440613 | None:intergenic | 40.0% | |
| AACTACACTACTTGGGCTAA+GGG | - | chr6.3:8440651-8440670 | MS.gene86064:CDS | 40.0% | |
| AAGGGCAAGCATTTCTACAA+TGG | - | chr6.3:8440669-8440688 | MS.gene86064:CDS | 40.0% | |
| CAGATCATCCACTTCACAAT+TGG | - | chr6.3:8442520-8442539 | MS.gene86064:intron | 40.0% | |
| CGCCATTACTATTTCATCAG+CGG | - | chr6.3:8442585-8442604 | MS.gene86064:intron | 40.0% | |
| CGTCAATATCGTGTTTGTGT+CGG | + | chr6.3:8441584-8441603 | None:intergenic | 40.0% | |
| GGTTTCTGCTACAAGGTTTA+TGG | - | chr6.3:8440596-8440615 | MS.gene86064:CDS | 40.0% | |
| GTTCATAAATAGTGCCAGTG+TGG | + | chr6.3:8441781-8441800 | None:intergenic | 40.0% | |
| TACTATTTCATCAGCGGCAA+AGG | - | chr6.3:8442591-8442610 | MS.gene86064:CDS | 40.0% | |
| TCTGCTACAAGGTTTATGGT+TGG | - | chr6.3:8440600-8440619 | MS.gene86064:CDS | 40.0% | |
| TGCCGCTGATGAAATAGTAA+TGG | + | chr6.3:8442590-8442609 | None:intergenic | 40.0% | |
| TGTTCTTGTCATGTTGCCTA+TGG | - | chr6.3:8440575-8440594 | MS.gene86064:CDS | 40.0% | |
| TTCCAAGCACTTTCATGGAT+TGG | + | chr6.3:8442355-8442374 | None:intergenic | 40.0% | |
| TTGTGACAAGCACAACAACA+AGG | + | chr6.3:8441544-8441563 | None:intergenic | 40.0% | |
| ! | AATTAAGCCATGGATTGAGG+AGG | + | chr6.3:8441898-8441917 | None:intergenic | 40.0% |
| ! | ATTAAGCCATGGATTGAGGA+GGG | + | chr6.3:8441897-8441916 | None:intergenic | 40.0% |
| ! | GCAAATTAAGCCATGGATTG+AGG | + | chr6.3:8441901-8441920 | None:intergenic | 40.0% |
| ! | TGCCCTCAAATCTACACTTT+TGG | + | chr6.3:8441288-8441307 | None:intergenic | 40.0% |
| !! | AGCACTTTCATGGATTGGAT+TGG | + | chr6.3:8442350-8442369 | None:intergenic | 40.0% |
| !! | ATCCAATCCATGAAAGTGCT+TGG | - | chr6.3:8442350-8442369 | MS.gene86064:intron | 40.0% |
| !! | GTTTATGGTTGGTGGTAGAA+TGG | - | chr6.3:8440611-8440630 | MS.gene86064:CDS | 40.0% |
| !!! | TAGCTATTTTAGGACCACAC+TGG | - | chr6.3:8441764-8441783 | MS.gene86064:intron | 40.0% |
| !!! | TTTTGCTATTGGTGCAGCAT+GGG | - | chr6.3:8442743-8442762 | MS.gene86064:CDS | 40.0% |
| !!! | TTTTTGCTATTGGTGCAGCA+TGG | - | chr6.3:8442742-8442761 | MS.gene86064:CDS | 40.0% |
| ATCCATGTAGCGATCCTACT+TGG | + | chr6.3:8442197-8442216 | None:intergenic | 45.0% | |
| ATGTAGCGATCCTACTTGGT+GGG | + | chr6.3:8442193-8442212 | None:intergenic | 45.0% | |
| CAACTACACTACTTGGGCTA+AGG | - | chr6.3:8440650-8440669 | MS.gene86064:CDS | 45.0% | |
| CAATTTCCCTCCTCAATCCA+TGG | - | chr6.3:8441888-8441907 | MS.gene86064:intron | 45.0% | |
| CCACTTCACAATTGGACAAC+CGG | - | chr6.3:8442528-8442547 | MS.gene86064:intron | 45.0% | |
| GCTACAAGGTTTATGGTTGG+TGG | - | chr6.3:8440603-8440622 | MS.gene86064:CDS | 45.0% | |
| TAATGGCGAGTCACGTTCAA+TGG | + | chr6.3:8442573-8442592 | None:intergenic | 45.0% | |
| TGCCTATGGTTTCTGCTACA+AGG | - | chr6.3:8440589-8440608 | MS.gene86064:CDS | 45.0% | |
| ! | AGCGGCAAAGGATTTTGCTT+TGG | - | chr6.3:8442603-8442622 | MS.gene86064:CDS | 45.0% |
| ! | CAAGTCTTATCCCACCAAGT+AGG | - | chr6.3:8442180-8442199 | MS.gene86064:intron | 45.0% |
| ! | CATGGATTGAGGAGGGAAAT+TGG | + | chr6.3:8441890-8441909 | None:intergenic | 45.0% |
| ! | CTACTTGGTGGGATAAGACT+TGG | + | chr6.3:8442182-8442201 | None:intergenic | 45.0% |
| ! | GGCAAAGGATTTTGCTTTGG+TGG | - | chr6.3:8442606-8442625 | MS.gene86064:CDS | 45.0% |
| !! | TGTAAATTTAAAAATAAATT+TGG | - | chr6.3:8441376-8441395 | MS.gene86064:intron | 5.0% |
| AACGACATCTCTTCCAGCTC+CGG | + | chr6.3:8442550-8442569 | None:intergenic | 50.0% | |
| CACCAAGTAGGATCGCTACA+TGG | - | chr6.3:8442192-8442211 | MS.gene86064:intron | 50.0% | |
| CATGTAGCGATCCTACTTGG+TGG | + | chr6.3:8442194-8442213 | None:intergenic | 50.0% | |
| CCGGTTGTCCAATTGTGAAG+TGG | + | chr6.3:8442531-8442550 | None:intergenic | 50.0% | |
| ! | TTTTCCGGTGCAGCTTTTGG+TGG | + | chr6.3:8442669-8442688 | None:intergenic | 50.0% |
| !! | GCTTTTTCCGGTGCAGCTTT+TGG | + | chr6.3:8442672-8442691 | None:intergenic | 50.0% |
| !! | TGGTTGGTGGTAGAATGGGT+TGG | - | chr6.3:8440616-8440635 | MS.gene86064:CDS | 50.0% |
| CACAATTGGACAACCGGAGC+TGG | - | chr6.3:8442534-8442553 | MS.gene86064:intron | 55.0% | |
| TCCACCACCAAAAGCTGCAC+CGG | - | chr6.3:8442662-8442681 | MS.gene86064:CDS | 55.0% | |
| ! | TCCGGTGCAGCTTTTGGTGG+TGG | + | chr6.3:8442666-8442685 | None:intergenic | 60.0% |
| !!! | GGTGCAGCTTTTGGTGGTGG+AGG | + | chr6.3:8442663-8442682 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 8440501 | 8442788 | 8440501 | ID=MS.gene86064 |
| chr6.3 | mRNA | 8440501 | 8442788 | 8440501 | ID=MS.gene86064.t1;Parent=MS.gene86064 |
| chr6.3 | exon | 8442587 | 8442788 | 8442587 | ID=MS.gene86064.t1.exon1;Parent=MS.gene86064.t1 |
| chr6.3 | CDS | 8442587 | 8442788 | 8442587 | ID=cds.MS.gene86064.t1;Parent=MS.gene86064.t1 |
| chr6.3 | exon | 8440501 | 8440838 | 8440501 | ID=MS.gene86064.t1.exon2;Parent=MS.gene86064.t1 |
| chr6.3 | CDS | 8440501 | 8440838 | 8440501 | ID=cds.MS.gene86064.t1;Parent=MS.gene86064.t1 |
| Gene Sequence |
| Protein sequence |
