AlfalfaGEDB | MS.gene060888

M. sativa cultivar XinJiangDaYe / MS.gene060888

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00514.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060888.t1	XP_003588895.2	86.9	428	53	2	1	425	1	428	3.50E-192	681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060888.t1	Q9C7G1	28.8	285	186	5	132	410	430	703	4.1e-24	114.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060888.t1	G7I8B4	86.9	428	53	2	1	425	1	428	2.5e-192	681.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052732	MS.gene060888	0.841115	5.78E-58	-1.69E-46
MS.gene053144	MS.gene060888	0.834309	3.23E-56	-1.69E-46
MS.gene054584	MS.gene060888	0.826758	2.28E-54	-1.69E-46
MS.gene059297	MS.gene060888	0.80407	2.58E-49	-1.69E-46
MS.gene060884	MS.gene060888	0.895522	8.85E-76	-1.69E-46
MS.gene060885	MS.gene060888	0.801201	1.01E-48	-1.69E-46
MS.gene060886	MS.gene060888	0.882412	1.06E-70	-1.69E-46
MS.gene060887	MS.gene060888	0.816866	4.43E-52	-1.69E-46
MS.gene060888	MS.gene064737	0.800083	1.70E-48	-1.69E-46
MS.gene060888	MS.gene068925	0.80748	4.95E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060888.t1	MTR_1g014420	94.626	428	20	2	1	425	1	428	0.0	748
MS.gene060888.t1	MTR_3g106140	63.121	423	140	5	1	423	1	407	1.07e-173	495
MS.gene060888.t1	MTR_2g015870	35.526	304	176	9	125	423	86	374	4.77e-36	137
MS.gene060888.t1	MTR_8g080280	30.065	306	195	6	113	410	415	709	2.14e-32	130
MS.gene060888.t1	MTR_4g063800	33.333	282	167	9	141	416	368	634	1.36e-27	115
MS.gene060888.t1	MTR_1g018180	27.793	367	237	12	55	418	2	343	1.68e-25	106
MS.gene060888.t1	MTR_3g085610	28.013	307	203	6	111	410	412	707	2.48e-25	109
MS.gene060888.t1	MTR_1g069845	31.930	285	180	8	127	410	325	596	6.46e-24	104
MS.gene060888.t1	MTR_1g069845	31.930	285	180	8	127	410	446	717	1.30e-23	103
MS.gene060888.t1	MTR_1g069845	31.930	285	180	8	127	410	442	713	1.40e-23	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060888.t1	AT4G31890	59.276	442	148	9	1	417	1	435	9.92e-169	483
MS.gene060888.t1	AT4G31890	59.276	442	148	9	1	417	1	435	9.92e-169	483
MS.gene060888.t1	AT4G31890	59.276	442	148	9	1	417	1	435	9.92e-169	483
MS.gene060888.t1	AT2G25130	59.028	432	147	10	1	424	1	410	8.84e-156	449
MS.gene060888.t1	AT2G27430	31.609	348	224	7	78	423	33	368	3.96e-35	135
MS.gene060888.t1	AT1G67530	30.132	302	193	5	122	416	422	712	3.36e-31	127
MS.gene060888.t1	AT1G67530	30.132	302	193	5	122	416	422	712	3.36e-31	127
MS.gene060888.t1	AT1G67530	30.132	302	193	5	122	416	422	712	3.36e-31	127
MS.gene060888.t1	AT1G24330	28.931	318	199	6	109	410	399	705	2.30e-28	118
MS.gene060888.t1	AT1G24330	28.931	318	199	6	109	410	399	705	2.30e-28	118

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Find 104 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAACTGAACATTGGC+TGG	0.400264	1.2:+8296961	None:intergenic
AAAGAAGCCATTGTTAAAGT+TGG	0.415455	1.2:-8297225	MS.gene060888:CDS
AAAGGCAATAAGTGCTGTCC+CGG	0.518431	1.2:-8296833	MS.gene060888:CDS
AAAGTTTGAGAATAGATAAA+GGG	0.425462	1.2:-8296606	MS.gene060888:CDS
AAATAAACTGAACATTGGCT+GGG	0.578121	1.2:+8296962	None:intergenic
AACGTCGGAAACCTCATTCT+CGG	0.508681	1.2:-8298316	MS.gene060888:CDS
AACTATCACCGGAACAACGT+CGG	0.600978	1.2:-8298331	MS.gene060888:CDS
AAGCAGGCCATGATCGAGGC+AGG	0.466247	1.2:-8296703	MS.gene060888:CDS
AAGCTTATTGAATCTTCAGA+TGG	0.525195	1.2:-8297183	MS.gene060888:CDS
AAGGAGAATTTGGAAGTAAG+AGG	0.491585	1.2:-8297881	MS.gene060888:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAACTGAACATTGGC+TGG	+	chr1.2:8297951-8297970	None:intergenic	30.0%
AAAGAAGCCATTGTTAAAGT+TGG	-	chr1.2:8297684-8297703	MS.gene060888:intron	30.0%
AAGCTTATTGAATCTTCAGA+TGG	-	chr1.2:8297726-8297745	MS.gene060888:intron	30.0%
CCAATTGAGTTTATCAGAAA+CGG	+	chr1.2:8297990-8298009	None:intergenic	30.0%
GATTCGAATAAACCGATAAT+TGG	-	chr1.2:8297807-8297826	MS.gene060888:CDS	30.0%
GTTATGTCGCATAAATCTTA+TGG	-	chr1.2:8298179-8298198	MS.gene060888:CDS	30.0%
TACAGAACCAACTTTAACAA+TGG	+	chr1.2:8297694-8297713	None:intergenic	30.0%
TACATACAACTGTAAGATCA+CGG	-	chr1.2:8297257-8297276	MS.gene060888:intron	30.0%
TTCAAAACCGAATGTGAAAT+CGG	-	chr1.2:8296841-8296860	MS.gene060888:CDS	30.0%
AAGGAGAATTTGGAAGTAAG+AGG	-	chr1.2:8297028-8297047	MS.gene060888:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	8296572	8298359	8296572	ID=MS.gene060888
chr1.2	mRNA	8296572	8298359	8296572	ID=MS.gene060888.t1;Parent=MS.gene060888
chr1.2	exon	8297764	8298359	8297764	ID=MS.gene060888.t1.exon1;Parent=MS.gene060888.t1
chr1.2	CDS	8297764	8298359	8297764	ID=cds.MS.gene060888.t1;Parent=MS.gene060888.t1
chr1.2	exon	8296572	8297251	8296572	ID=MS.gene060888.t1.exon2;Parent=MS.gene060888.t1
chr1.2	CDS	8296572	8297251	8296572	ID=cds.MS.gene060888.t1;Parent=MS.gene060888.t1

Gene Sequence

>MS.gene060888

ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCATTCTCGGCCACCACCACCACCGTTCCACCAAAACACCAACATTCTCCCACCACTTCCGTCTCTGGAACTCTCTCTCCATCGCCTCCCTCCGTCGTCTCATCTTCCACGCCGTCAGCTGCGGTGGCGCCACCTCCCGTTACAATCACCGCCGCCGTAGCACCTTCAACGAATATGACACTGAAGACTTCTCTTCCTCAGCTTCCTCCTTCGACAAACGGCAACAGAATCAAACTTCAAAACCGAATGTGAAATCGGAGAAACTCTCCGATCTTCTGAACATGGCGGAGATGGAGACAGAAGAGGAAGCGAAGAAGAAGGAAGAAGCTCTAGAGAAACTTAAGAAGCTTGTGAAGGATTTGCATGAGGAAGATGATTCGGTGAAGCGGCGTGAAGCTGCGACCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTAAGAGGAACACTTTCAATGCTCGGAGCGATTCCACCGTTAGTCGCAATGCTCGATTCAAAAGACGTTGATTCTCAGATCGCTTCTCTCTACGCATTGCTCAATCTTGGAATCGGAAACGATGCGTGAGTTTCTTCATCTTCTTCGCTTTATTTTTTTATTTTTTTGTTTTTATATGTAGACAAAGTGATAAACATCGCATGAAACTCATATATACATACAACTGTAAGATCACGGGTTCGAAGTCGAGTTTAGCAATATAGACATTGTCAGTTGAATTTGTGTGTTATATTGTTAACTTTCTTTTTTTGTGGTTAGGTAATTTTGGTGGTAATTTTGATTGATTAGGTCATTTTCATTTAATAATTATTTGATTATGATTATTCTCTTTGTATTAAATTGTTAAAATGACAAGCATGTGATTTTAATTTTGGTAGTTATATATCATTTTTGTTTTTATTATTATTAATAAAGTTGTTCTGTTTTGTAATTTTTTTTTAATGTTAATGTCTATTTCTACACATGATGATGATGTGTGTTTTCATTGTTTCTTGCATATGTATGATTGTGATGTTAGGAGAATAGTGGTAAAAAGTTCATTTTTTTTATTTGGTTTTTTTTTTTTTTGTTATTACAGAAATAAAGAAGCCATTGTTAAAGTTGGTTCTGTACACAAGATGCTTAAGCTTATTGAATCTTCAGATGGTATTGATTCGGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCAGCTGCAATACCCTTTTTAGTTAGAACTCTTCAGAATAAGAATATAGATAAGAAAAGTAGCAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATCTTCCCAGCCAATGTTCAGTTTATTTTGGAAACTGATTTGGTACCGTTTCTGATAAACTCAATTGGCGACATGGGAGTAACTGAAAGAAACCTTTCAATCCTTAGCAATTTGGTATCAACTAGAGCAGGTAGAAAGGCAATAAGTGCTGTCCCGGATGTGTTTCCTATCTTGGTCGATGTATTGAATTGGAATGATTCACCTGAATGCCAGGAAAAGGTTTCGTATGTTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTTCTTGAGTTGTCGCTTATTGGTACTACTTTGACTCAGAAACGGGCGTCGAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAGGTTTCAGGGAACTACAACGGAAATTTAG

Protein sequence

>MS.gene060888.t1

MANYHRNNVGNLILGHHHHRSTKTPTFSHHFRLWNSLSIASLRRLIFHAVSCGGATSRYNHRRRSTFNEYDTEDFSSSASSFDKRQQNQTSKPNVKSEKLSDLLNMAEMETEEEAKKKEEALEKLKKLVKDLHEEDDSVKRREAATTVRMLAKENLEVRGTLSMLGAIPPLVAMLDSKDVDSQIASLYALLNLGIGNDANKEAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQNKNIDKKSSNQVKQDALRALYNLSIFPANVQFILETDLVPFLINSIGDMGVTERNLSILSNLVSTRAGRKAISAVPDVFPILVDVLNWNDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGIVSSLLELSLIGTTLTQKRASRLLESLRIDKGKQVSGNYNGNL