AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060888

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060888.t1 MTR_1g014420 94.626 428 20 2 1 425 1 428 0.0 748
MS.gene060888.t1 MTR_3g106140 63.121 423 140 5 1 423 1 407 1.07e-173 495
MS.gene060888.t1 MTR_2g015870 35.526 304 176 9 125 423 86 374 4.77e-36 137
MS.gene060888.t1 MTR_8g080280 30.065 306 195 6 113 410 415 709 2.14e-32 130
MS.gene060888.t1 MTR_4g063800 33.333 282 167 9 141 416 368 634 1.36e-27 115
MS.gene060888.t1 MTR_1g018180 27.793 367 237 12 55 418 2 343 1.68e-25 106
MS.gene060888.t1 MTR_3g085610 28.013 307 203 6 111 410 412 707 2.48e-25 109
MS.gene060888.t1 MTR_1g069845 31.930 285 180 8 127 410 325 596 6.46e-24 104
MS.gene060888.t1 MTR_1g069845 31.930 285 180 8 127 410 446 717 1.30e-23 103
MS.gene060888.t1 MTR_1g069845 31.930 285 180 8 127 410 442 713 1.40e-23 103
MS.gene060888.t1 MTR_3g466220 31.944 288 182 7 124 410 552 826 6.57e-23 102
MS.gene060888.t1 MTR_3g466220 31.944 288 182 7 124 410 531 805 7.49e-23 101
MS.gene060888.t1 MTR_4g485520 30.258 271 175 6 142 410 389 647 8.84e-23 101
MS.gene060888.t1 MTR_5g079550 31.786 280 174 6 136 410 30 297 1.23e-22 99.0
MS.gene060888.t1 MTR_4g485520 30.996 271 173 7 142 410 221 479 1.76e-22 99.8
MS.gene060888.t1 MTR_7g097020 29.123 285 188 7 127 410 484 755 1.54e-21 97.8
MS.gene060888.t1 MTR_7g059405 31.365 271 174 5 141 411 376 634 2.08e-21 97.1
MS.gene060888.t1 MTR_7g078330 30.515 272 175 6 141 410 382 641 6.98e-21 95.5
MS.gene060888.t1 MTR_1g094215 31.915 282 178 6 136 415 172 441 7.30e-21 94.7
MS.gene060888.t1 MTR_1g094215 31.915 282 178 6 136 415 355 624 1.60e-20 94.4
MS.gene060888.t1 MTR_5g069340 32.601 273 169 4 143 410 51 313 4.03e-19 88.6
MS.gene060888.t1 MTR_3g067685 31.186 295 178 8 121 410 44 318 7.35e-19 88.2
MS.gene060888.t1 MTR_3g103050 28.525 305 177 10 123 410 49 329 1.27e-18 87.0
MS.gene060888.t1 MTR_5g083030 32.394 213 132 5 141 350 420 623 3.42e-18 87.4
MS.gene060888.t1 MTR_7g095010 68.966 58 18 0 106 163 1 58 7.83e-18 77.8
MS.gene060888.t1 MTR_2g026130 28.328 293 196 7 120 410 169 449 1.33e-16 82.0
MS.gene060888.t1 MTR_6g004790 26.552 290 197 5 126 410 3 281 2.68e-15 77.0
MS.gene060888.t1 MTR_2g018010 26.573 286 190 7 144 423 414 685 2.31e-12 69.3
MS.gene060888.t1 MTR_3g078340 25.839 298 200 7 115 410 208 486 3.02e-12 68.6
MS.gene060888.t1 MTR_4g126290 65.625 64 22 0 106 169 1 64 5.55e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060888.t1 AT4G31890 59.276 442 148 9 1 417 1 435 9.92e-169 483
MS.gene060888.t1 AT4G31890 59.276 442 148 9 1 417 1 435 9.92e-169 483
MS.gene060888.t1 AT4G31890 59.276 442 148 9 1 417 1 435 9.92e-169 483
MS.gene060888.t1 AT2G25130 59.028 432 147 10 1 424 1 410 8.84e-156 449
MS.gene060888.t1 AT2G27430 31.609 348 224 7 78 423 33 368 3.96e-35 135
MS.gene060888.t1 AT1G67530 30.132 302 193 5 122 416 422 712 3.36e-31 127
MS.gene060888.t1 AT1G67530 30.132 302 193 5 122 416 422 712 3.36e-31 127
MS.gene060888.t1 AT1G67530 30.132 302 193 5 122 416 422 712 3.36e-31 127
MS.gene060888.t1 AT1G24330 28.931 318 199 6 109 410 399 705 2.30e-28 118
MS.gene060888.t1 AT1G24330 28.931 318 199 6 109 410 399 705 2.30e-28 118
MS.gene060888.t1 AT2G23140 31.579 342 212 11 71 410 306 627 6.45e-27 114
MS.gene060888.t1 AT2G23140 31.579 342 212 11 71 410 306 627 6.45e-27 114
MS.gene060888.t1 AT2G23140 31.579 342 212 11 71 410 498 819 1.47e-26 113
MS.gene060888.t1 AT2G23140 31.579 342 212 11 71 410 495 816 1.54e-26 113
MS.gene060888.t1 AT2G23140 31.579 342 212 11 71 410 495 816 1.54e-26 113
MS.gene060888.t1 AT3G46510 33.212 274 163 8 141 409 369 627 6.70e-26 110
MS.gene060888.t1 AT2G28830 32.278 316 184 11 112 419 279 572 4.76e-25 108
MS.gene060888.t1 AT1G27910 29.012 324 212 7 94 410 391 703 5.85e-25 108
MS.gene060888.t1 AT1G71020 31.387 274 172 7 141 410 210 471 4.76e-22 98.6
MS.gene060888.t1 AT1G71020 31.387 274 172 7 141 410 358 619 5.30e-22 99.0
MS.gene060888.t1 AT1G23030 31.502 273 172 7 141 410 348 608 6.23e-22 98.6
MS.gene060888.t1 AT3G54790 31.818 286 180 9 127 410 440 712 1.52e-21 97.8
MS.gene060888.t1 AT3G54790 31.818 286 180 9 127 410 476 748 1.57e-21 97.8
MS.gene060888.t1 AT3G54790 31.818 286 180 9 127 410 476 748 1.57e-21 97.8
MS.gene060888.t1 AT5G67340 25.532 376 255 8 36 410 346 697 2.44e-21 97.1
MS.gene060888.t1 AT5G67340 25.532 376 255 8 36 410 346 697 2.44e-21 97.1
MS.gene060888.t1 AT3G54850 30.249 281 182 6 140 418 361 629 4.89e-21 96.3
MS.gene060888.t1 AT3G01400 28.571 273 181 7 140 410 79 339 8.34e-21 93.6
MS.gene060888.t1 AT3G03440 28.975 283 180 8 136 410 76 345 7.54e-17 82.4
MS.gene060888.t1 AT5G58680 29.210 291 187 9 125 410 62 338 1.10e-16 81.6
MS.gene060888.t1 AT5G42340 30.357 280 179 7 140 417 395 660 1.53e-16 82.4
MS.gene060888.t1 AT4G12710 30.576 278 176 5 141 410 62 330 1.78e-15 78.2
MS.gene060888.t1 AT4G16490 26.708 322 220 8 93 410 152 461 2.25e-13 72.0
MS.gene060888.t1 AT5G14510 26.506 249 167 8 168 410 41 279 1.99e-12 68.2

Find 104 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCGAATAAACCGATAAT+TGG 0.146060 1.2:-8297102 MS.gene060888:CDS
AGCCAATGTTCAGTTTATTT+TGG 0.151005 1.2:-8296959 MS.gene060888:CDS
CTTCTTGAGTTGTCGCTTAT+TGG 0.172434 1.2:-8296667 MS.gene060888:CDS
CTGAAGAGTTCTAACTAAAA+AGG 0.175660 1.2:+8297062 None:intergenic
CCTTTCAATCCTTAGCAATT+TGG 0.178700 1.2:-8296875 MS.gene060888:CDS
CCCGGATGTGTTTCCTATCT+TGG 0.249308 1.2:-8296815 MS.gene060888:CDS
GGGAACTACAACGGAAATTT+AGG 0.256409 1.2:-8296571 None:intergenic
GATAAAGGGAAACAGGTTTC+AGG 0.257229 1.2:-8296592 MS.gene060888:CDS
GTGGGAGAATGTTGGTGTTT+TGG 0.267693 1.2:+8298273 None:intergenic
AATGCTCGCTAAGGAGAATT+TGG 0.287918 1.2:-8297891 MS.gene060888:CDS
TGAGGTTTCCGACGTTGTTC+CGG 0.317043 1.2:+8298323 None:intergenic
GAGAATAGATAAAGGGAAAC+AGG 0.320824 1.2:-8296599 MS.gene060888:CDS
GAAACGGGCGTCGAGGCTAT+TGG 0.335825 1.2:-8296629 MS.gene060888:CDS
GAAAGTTTGAGAATAGATAA+AGG 0.351248 1.2:-8296607 MS.gene060888:CDS
GCAGCTGAAGACCCAATTAT+CGG 0.368315 1.2:+8297090 None:intergenic
CTCTACGCATTGCTCAATCT+TGG 0.375202 1.2:-8297779 MS.gene060888:CDS
TCTTGGTCGATGTATTGAAT+TGG 0.380089 1.2:-8296798 MS.gene060888:CDS
TCTCCCACCACTTCCGTCTC+TGG 0.384503 1.2:-8298258 MS.gene060888:CDS
GTTATGTCGCATAAATCTTA+TGG 0.386596 1.2:-8296730 MS.gene060888:CDS
AGTTTCTCCGATTTCACATT+CGG 0.396316 1.2:+8298061 None:intergenic
AAAATAAACTGAACATTGGC+TGG 0.400264 1.2:+8296961 None:intergenic
TGGTGGAACGGTGGTGGTGG+TGG 0.401730 1.2:+8298293 None:intergenic
TTCAAAACCGAATGTGAAAT+CGG 0.408736 1.2:-8298068 MS.gene060888:CDS
AAAGAAGCCATTGTTAAAGT+TGG 0.415455 1.2:-8297225 MS.gene060888:CDS
TTCAATACATCGACCAAGAT+AGG 0.418350 1.2:+8296802 None:intergenic
ATCTTCAGATGGTATTGATT+CGG 0.420177 1.2:-8297172 MS.gene060888:CDS
AAAGTTTGAGAATAGATAAA+GGG 0.425462 1.2:-8296606 MS.gene060888:CDS
TACTACTTTGACTCAGAAAC+GGG 0.441375 1.2:-8296644 MS.gene060888:CDS
ATTCGAATAAACCGATAATT+GGG 0.445804 1.2:-8297101 MS.gene060888:CDS
TCTTCTGAACATGGCGGAGA+TGG 0.446454 1.2:-8298032 MS.gene060888:CDS
GCGGTGATTGTAACGGGAGG+TGG 0.458786 1.2:+8298174 None:intergenic
CCAAATTGCTAAGGATTGAA+AGG 0.463067 1.2:+8296875 None:intergenic
AAGCAGGCCATGATCGAGGC+AGG 0.466247 1.2:-8296703 MS.gene060888:CDS
TTCAGTGTCATATTCGTTGA+AGG 0.469707 1.2:+8298141 None:intergenic
TTCACCTGAATGCCAGGAAA+AGG 0.471606 1.2:-8296770 MS.gene060888:CDS
ACGGCGGCGGTGATTGTAAC+GGG 0.473080 1.2:+8298168 None:intergenic
CACAATCCCTGCCTCGATCA+TGG 0.473174 1.2:+8296696 None:intergenic
GTACTACTTTGACTCAGAAA+CGG 0.478774 1.2:-8296645 MS.gene060888:CDS
TTTGCATGAGGAAGATGATT+CGG 0.481809 1.2:-8297945 MS.gene060888:CDS
CCAATTGAGTTTATCAGAAA+CGG 0.486775 1.2:+8296922 None:intergenic
ACCAAGATAGGAAACACATC+CGG 0.487266 1.2:+8296814 None:intergenic
GAATGATTCACCTGAATGCC+AGG 0.488606 1.2:-8296776 MS.gene060888:CDS
AAGGAGAATTTGGAAGTAAG+AGG 0.491585 1.2:-8297881 MS.gene060888:CDS
CCGTTTCTGATAAACTCAAT+TGG 0.492077 1.2:-8296922 MS.gene060888:CDS
ATAAAGGGAAACAGGTTTCA+GGG 0.497964 1.2:-8296591 MS.gene060888:CDS
GGTGGTGGTGGCCGAGAATG+AGG 0.498770 1.2:+8298305 None:intergenic
AGAAGAGGAAGCGAAGAAGA+AGG 0.499264 1.2:-8298005 MS.gene060888:CDS
GCATTGCTCAATCTTGGAAT+CGG 0.503671 1.2:-8297773 MS.gene060888:CDS
CTCCGCCATGTTCAGAAGAT+CGG 0.507404 1.2:+8298036 None:intergenic
AACGTCGGAAACCTCATTCT+CGG 0.508681 1.2:-8298316 MS.gene060888:CDS
AGTTCCAGAGACGGAAGTGG+TGG 0.509557 1.2:+8298254 None:intergenic
ATCTTCCACGCCGTCAGCTG+CGG 0.516615 1.2:-8298202 MS.gene060888:CDS
AAAGGCAATAAGTGCTGTCC+CGG 0.518431 1.2:-8296833 MS.gene060888:CDS
TACAGAACCAACTTTAACAA+TGG 0.525029 1.2:+8297218 None:intergenic
AAGCTTATTGAATCTTCAGA+TGG 0.525195 1.2:-8297183 MS.gene060888:CDS
TTCCACGCCGTCAGCTGCGG+TGG 0.526745 1.2:-8298199 MS.gene060888:CDS
ATCAACTAGAGCAGGTAGAA+AGG 0.527044 1.2:-8296851 MS.gene060888:CDS
CGTTGAAGGTGCTACGGCGG+CGG 0.537750 1.2:+8298155 None:intergenic
CAGCTTCCTCCTTCGACAAA+CGG 0.537814 1.2:-8298105 MS.gene060888:CDS
ATTCTGTTGCCGTTTGTCGA+AGG 0.541771 1.2:+8298096 None:intergenic
GAGAGTTCCAGAGACGGAAG+TGG 0.541905 1.2:+8298251 None:intergenic
CGGAAGTGGTGGGAGAATGT+TGG 0.542844 1.2:+8298265 None:intergenic
TTCCAAAATAAACTGAACAT+TGG 0.543173 1.2:+8296957 None:intergenic
GATAAACTCAATTGGCGACA+TGG 0.543215 1.2:-8296914 MS.gene060888:CDS
CCAAGATAGGAAACACATCC+GGG 0.543957 1.2:+8296815 None:intergenic
GAGACGACGGAGGGAGGCGA+TGG 0.543987 1.2:+8298225 None:intergenic
TAAATCTTATGGTGACAAGC+AGG 0.546845 1.2:-8296719 MS.gene060888:CDS
AATTTGGTATCAACTAGAGC+AGG 0.548849 1.2:-8296859 MS.gene060888:CDS
GAATCGAGCATTGCGACTAA+CGG 0.551485 1.2:+8297830 None:intergenic
TACGGCGGCGGTGATTGTAA+CGG 0.552541 1.2:+8298167 None:intergenic
AGAGGAACACTTTCAATGCT+CGG 0.553240 1.2:-8297863 MS.gene060888:CDS
GGTGGCGCCACCGCAGCTGA+CGG 0.558285 1.2:+8298192 None:intergenic
CACCGTGAGAATGCTCGCTA+AGG 0.563128 1.2:-8297900 MS.gene060888:CDS
CTCCTTAGCGAGCATTCTCA+CGG 0.567241 1.2:+8297898 None:intergenic
CGCCACCGCAGCTGACGGCG+TGG 0.567727 1.2:+8298197 None:intergenic
CTGTTGCCGTTTGTCGAAGG+AGG 0.569127 1.2:+8298099 None:intergenic
GAAACTTAAGAAGCTTGTGA+AGG 0.574556 1.2:-8297969 MS.gene060888:CDS
AAATAAACTGAACATTGGCT+GGG 0.578121 1.2:+8296962 None:intergenic
ATAAACTCAATTGGCGACAT+GGG 0.579986 1.2:-8296913 MS.gene060888:CDS
CATATTCGTTGAAGGTGCTA+CGG 0.583082 1.2:+8298149 None:intergenic
TAGTTGATACCAAATTGCTA+AGG 0.585434 1.2:+8296866 None:intergenic
GAAGATGAGACGACGGAGGG+AGG 0.594413 1.2:+8298219 None:intergenic
TCGAGCATTGCGACTAACGG+TGG 0.599056 1.2:+8297833 None:intergenic
GGAGAATGGCAAACTATCAC+CGG 0.599573 1.2:-8298342 None:intergenic
AACTATCACCGGAACAACGT+CGG 0.600978 1.2:-8298331 MS.gene060888:CDS
TTCAGATGGTATTGATTCGG+CGG 0.602952 1.2:-8297169 MS.gene060888:CDS
GTTCCAGAGACGGAAGTGGT+GGG 0.614760 1.2:+8298255 None:intergenic
AGGAAGATGATTCGGTGAAG+CGG 0.615812 1.2:-8297937 MS.gene060888:CDS
GGCGGAGATGGAGACAGAAG+AGG 0.621626 1.2:-8298020 MS.gene060888:CDS
ACTCTCCGATCTTCTGAACA+TGG 0.624622 1.2:-8298041 MS.gene060888:CDS
TGGAGAGAGAGTTCCAGAGA+CGG 0.628731 1.2:+8298245 None:intergenic
GTGGAAGATGAGACGACGGA+GGG 0.638181 1.2:+8298216 None:intergenic
GCTTGTGAAGGATTTGCATG+AGG 0.641834 1.2:-8297957 MS.gene060888:CDS
ATTCGTTGAAGGTGCTACGG+CGG 0.652805 1.2:+8298152 None:intergenic
TGACTCAGAAACGGGCGTCG+AGG 0.654081 1.2:-8296636 MS.gene060888:CDS
TTTGTCGAAGGAGGAAGCTG+AGG 0.654659 1.2:+8298108 None:intergenic
AGCAGGCCATGATCGAGGCA+GGG 0.660279 1.2:-8296702 MS.gene060888:CDS
TGACAAGCAGGCCATGATCG+AGG 0.670822 1.2:-8296707 MS.gene060888:CDS
CGTGGAAGATGAGACGACGG+AGG 0.676052 1.2:+8298215 None:intergenic
CAGGTTTCAGGGAACTACAA+CGG 0.687032 1.2:-8296580 MS.gene060888:CDS
CGGCGTGGAAGATGAGACGA+CGG 0.695582 1.2:+8298212 None:intergenic
GCGGCGGTGATTGTAACGGG+AGG 0.698798 1.2:+8298171 None:intergenic
CTTAGCGAGCATTCTCACGG+TGG 0.717190 1.2:+8297901 None:intergenic
CTCCGATCTTCTGAACATGG+CGG 0.718028 1.2:-8298038 MS.gene060888:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTCATTTTTTTTATT+TGG - chr1.2:8297633-8297652 MS.gene060888:intron 10.0%
!! AAAGTTTGAGAATAGATAAA+GGG - chr1.2:8298303-8298322 MS.gene060888:CDS 20.0%
!!! TTGTTAACTTTCTTTTTTTG+TGG - chr1.2:8297334-8297353 MS.gene060888:intron 20.0%
! ATATGTATGATTGTGATGTT+AGG - chr1.2:8297598-8297617 MS.gene060888:intron 25.0%
! ATTCGAATAAACCGATAATT+GGG - chr1.2:8297808-8297827 MS.gene060888:CDS 25.0%
! GAAAGTTTGAGAATAGATAA+AGG - chr1.2:8298302-8298321 MS.gene060888:CDS 25.0%
! TTCCAAAATAAACTGAACAT+TGG + chr1.2:8297955-8297974 None:intergenic 25.0%
!! TGAAGAGTTCTAACTAAAAA+GGG + chr1.2:8297849-8297868 None:intergenic 25.0%
!! TTTTTGTGGTTAGGTAATTT+TGG - chr1.2:8297348-8297367 MS.gene060888:intron 25.0%
!!! AACTTTCTTTTTTTGTGGTT+AGG - chr1.2:8297339-8297358 MS.gene060888:intron 25.0%
!!! CAAGCATGTGATTTTAATTT+TGG - chr1.2:8297454-8297473 MS.gene060888:intron 25.0%
!!! GTTTATTTTGGAAACTGATT+TGG - chr1.2:8297962-8297981 MS.gene060888:CDS 25.0%
AAAATAAACTGAACATTGGC+TGG + chr1.2:8297951-8297970 None:intergenic 30.0%
AAAGAAGCCATTGTTAAAGT+TGG - chr1.2:8297684-8297703 MS.gene060888:intron 30.0%
AAGCTTATTGAATCTTCAGA+TGG - chr1.2:8297726-8297745 MS.gene060888:intron 30.0%
CCAATTGAGTTTATCAGAAA+CGG + chr1.2:8297990-8298009 None:intergenic 30.0%
GATTCGAATAAACCGATAAT+TGG - chr1.2:8297807-8297826 MS.gene060888:CDS 30.0%
GTTATGTCGCATAAATCTTA+TGG - chr1.2:8298179-8298198 MS.gene060888:CDS 30.0%
TACAGAACCAACTTTAACAA+TGG + chr1.2:8297694-8297713 None:intergenic 30.0%
TACATACAACTGTAAGATCA+CGG - chr1.2:8297257-8297276 MS.gene060888:intron 30.0%
TTCAAAACCGAATGTGAAAT+CGG - chr1.2:8296841-8296860 MS.gene060888:CDS 30.0%
! AAATAAACTGAACATTGGCT+GGG + chr1.2:8297950-8297969 None:intergenic 30.0%
! AGCCAATGTTCAGTTTATTT+TGG - chr1.2:8297950-8297969 MS.gene060888:CDS 30.0%
! CTGAAGAGTTCTAACTAAAA+AGG + chr1.2:8297850-8297869 None:intergenic 30.0%
! TAGTTGATACCAAATTGCTA+AGG + chr1.2:8298046-8298065 None:intergenic 30.0%
! TTTTCTTGGATTAAGTGCTT+TGG - chr1.2:8297785-8297804 MS.gene060888:CDS 30.0%
!! AAAGGTTTCGTATGTTTTGA+TGG - chr1.2:8298157-8298176 MS.gene060888:CDS 30.0%
!! ATCTTCAGATGGTATTGATT+CGG - chr1.2:8297737-8297756 MS.gene060888:intron 30.0%
!!! GGTGGTAATTTTGATTGATT+AGG - chr1.2:8297369-8297388 MS.gene060888:intron 30.0%
AAGGAGAATTTGGAAGTAAG+AGG - chr1.2:8297028-8297047 MS.gene060888:CDS 35.0%
AATTTGGTATCAACTAGAGC+AGG - chr1.2:8298050-8298069 MS.gene060888:CDS 35.0%
ACATACAACTGTAAGATCAC+GGG - chr1.2:8297258-8297277 MS.gene060888:intron 35.0%
AGTTTCTCCGATTTCACATT+CGG + chr1.2:8296851-8296870 None:intergenic 35.0%
ATAAACTCAATTGGCGACAT+GGG - chr1.2:8297996-8298015 MS.gene060888:CDS 35.0%
ATAAAGGGAAACAGGTTTCA+GGG - chr1.2:8298318-8298337 MS.gene060888:CDS 35.0%
CCAAATTGCTAAGGATTGAA+AGG + chr1.2:8298037-8298056 None:intergenic 35.0%
CCGTTTCTGATAAACTCAAT+TGG - chr1.2:8297987-8298006 MS.gene060888:CDS 35.0%
CCTTTCAATCCTTAGCAATT+TGG - chr1.2:8298034-8298053 MS.gene060888:CDS 35.0%
GAAACTTAAGAAGCTTGTGA+AGG - chr1.2:8296940-8296959 MS.gene060888:CDS 35.0%
GAGAATAGATAAAGGGAAAC+AGG - chr1.2:8298310-8298329 MS.gene060888:CDS 35.0%
GTACTACTTTGACTCAGAAA+CGG - chr1.2:8298264-8298283 MS.gene060888:CDS 35.0%
TAAATCTTATGGTGACAAGC+AGG - chr1.2:8298190-8298209 MS.gene060888:CDS 35.0%
TACTACTTTGACTCAGAAAC+GGG - chr1.2:8298265-8298284 MS.gene060888:CDS 35.0%
TCTTGGTCGATGTATTGAAT+TGG - chr1.2:8298111-8298130 MS.gene060888:CDS 35.0%
TTCAATACATCGACCAAGAT+AGG + chr1.2:8298110-8298129 None:intergenic 35.0%
TTCAGTGTCATATTCGTTGA+AGG + chr1.2:8296771-8296790 None:intergenic 35.0%
TTGTGATGTTAGGAGAATAG+TGG - chr1.2:8297608-8297627 MS.gene060888:intron 35.0%
TTTGCATGAGGAAGATGATT+CGG - chr1.2:8296964-8296983 MS.gene060888:CDS 35.0%
! AAACATACGAAACCTTTTCC+TGG + chr1.2:8298154-8298173 None:intergenic 35.0%
! TTGTGGTTAGGTAATTTTGG+TGG - chr1.2:8297351-8297370 MS.gene060888:intron 35.0%
AATGCTCGCTAAGGAGAATT+TGG - chr1.2:8297018-8297037 MS.gene060888:CDS 40.0%
ACCAAGATAGGAAACACATC+CGG + chr1.2:8298098-8298117 None:intergenic 40.0%
AGAGGAACACTTTCAATGCT+CGG - chr1.2:8297046-8297065 MS.gene060888:CDS 40.0%
ATCAACTAGAGCAGGTAGAA+AGG - chr1.2:8298058-8298077 MS.gene060888:CDS 40.0%
GATAAACTCAATTGGCGACA+TGG - chr1.2:8297995-8298014 MS.gene060888:CDS 40.0%
GATAAAGGGAAACAGGTTTC+AGG - chr1.2:8298317-8298336 MS.gene060888:CDS 40.0%
GCATTGCTCAATCTTGGAAT+CGG - chr1.2:8297136-8297155 MS.gene060888:CDS 40.0%
! CTTCTTGAGTTGTCGCTTAT+TGG - chr1.2:8298242-8298261 MS.gene060888:CDS 40.0%
! GCGATTGTTGCGAATTTTCT+TGG - chr1.2:8297771-8297790 MS.gene060888:CDS 40.0%
!! CATATTCGTTGAAGGTGCTA+CGG + chr1.2:8296763-8296782 None:intergenic 40.0%
!! TTCAGATGGTATTGATTCGG+CGG - chr1.2:8297740-8297759 MS.gene060888:intron 40.0%
!!! ATGTTGGTGTTTTGGTGGAA+CGG + chr1.2:8296631-8296650 None:intergenic 40.0%
AACGTCGGAAACCTCATTCT+CGG - chr1.2:8296593-8296612 MS.gene060888:CDS 45.0%
AACTATCACCGGAACAACGT+CGG - chr1.2:8296578-8296597 MS.gene060888:CDS 45.0%
ACTCTCCGATCTTCTGAACA+TGG - chr1.2:8296868-8296887 MS.gene060888:CDS 45.0%
AGAAGAGGAAGCGAAGAAGA+AGG - chr1.2:8296904-8296923 MS.gene060888:CDS 45.0%
CAGGTTTCAGGGAACTACAA+CGG - chr1.2:8298329-8298348 MS.gene060888:CDS 45.0%
CCAAGATAGGAAACACATCC+GGG + chr1.2:8298097-8298116 None:intergenic 45.0%
CTCTACGCATTGCTCAATCT+TGG - chr1.2:8297130-8297149 MS.gene060888:CDS 45.0%
GAATGATTCACCTGAATGCC+AGG - chr1.2:8298133-8298152 MS.gene060888:CDS 45.0%
GCAGCTGAAGACCCAATTAT+CGG + chr1.2:8297822-8297841 None:intergenic 45.0%
GCTTGTGAAGGATTTGCATG+AGG - chr1.2:8296952-8296971 MS.gene060888:CDS 45.0%
TTCACCTGAATGCCAGGAAA+AGG - chr1.2:8298139-8298158 MS.gene060888:CDS 45.0%
! AAAGGCAATAAGTGCTGTCC+CGG - chr1.2:8298076-8298095 MS.gene060888:CDS 45.0%
! ATTCTGTTGCCGTTTGTCGA+AGG + chr1.2:8296816-8296835 None:intergenic 45.0%
! GAAACCTTTTCCTGGCATTC+AGG + chr1.2:8298146-8298165 None:intergenic 45.0%
! GAATCGAGCATTGCGACTAA+CGG + chr1.2:8297082-8297101 None:intergenic 45.0%
!! AGGAAGATGATTCGGTGAAG+CGG - chr1.2:8296972-8296991 MS.gene060888:CDS 45.0%
!! GGAGAATGTTGGTGTTTTGG+TGG + chr1.2:8296636-8296655 None:intergenic 45.0%
!! GTGGGAGAATGTTGGTGTTT+TGG + chr1.2:8296639-8296658 None:intergenic 45.0%
CAGCTTCCTCCTTCGACAAA+CGG - chr1.2:8296804-8296823 MS.gene060888:CDS 50.0%
CCCGGATGTGTTTCCTATCT+TGG - chr1.2:8298094-8298113 MS.gene060888:CDS 50.0%
CTCCGATCTTCTGAACATGG+CGG - chr1.2:8296871-8296890 MS.gene060888:CDS 50.0%
CTCCGCCATGTTCAGAAGAT+CGG + chr1.2:8296876-8296895 None:intergenic 50.0%
CTCCTTAGCGAGCATTCTCA+CGG + chr1.2:8297014-8297033 None:intergenic 50.0%
TGAGGTTTCCGACGTTGTTC+CGG + chr1.2:8296589-8296608 None:intergenic 50.0%
TGGAGAGAGAGTTCCAGAGA+CGG + chr1.2:8296667-8296686 None:intergenic 50.0%
TTTGTCGAAGGAGGAAGCTG+AGG + chr1.2:8296804-8296823 None:intergenic 50.0%
! TCTTCTGAACATGGCGGAGA+TGG - chr1.2:8296877-8296896 MS.gene060888:CDS 50.0%
!! ATTCGTTGAAGGTGCTACGG+CGG + chr1.2:8296760-8296779 None:intergenic 50.0%
!!! TTGGTGTTTTGGTGGAACGG+TGG + chr1.2:8296628-8296647 None:intergenic 50.0%
AGTTCCAGAGACGGAAGTGG+TGG + chr1.2:8296658-8296677 None:intergenic 55.0%
CACAATCCCTGCCTCGATCA+TGG + chr1.2:8298216-8298235 None:intergenic 55.0%
CACCGTGAGAATGCTCGCTA+AGG - chr1.2:8297009-8297028 MS.gene060888:CDS 55.0%
CTTAGCGAGCATTCTCACGG+TGG + chr1.2:8297011-8297030 None:intergenic 55.0%
GAGAGTTCCAGAGACGGAAG+TGG + chr1.2:8296661-8296680 None:intergenic 55.0%
GTGGAAGATGAGACGACGGA+GGG + chr1.2:8296696-8296715 None:intergenic 55.0%
GTTCCAGAGACGGAAGTGGT+GGG + chr1.2:8296657-8296676 None:intergenic 55.0%
TACGGCGGCGGTGATTGTAA+CGG + chr1.2:8296745-8296764 None:intergenic 55.0%
TGACAAGCAGGCCATGATCG+AGG - chr1.2:8298202-8298221 MS.gene060888:CDS 55.0%
! CGGAAGTGGTGGGAGAATGT+TGG + chr1.2:8296647-8296666 None:intergenic 55.0%
! CTGTTGCCGTTTGTCGAAGG+AGG + chr1.2:8296813-8296832 None:intergenic 55.0%
! TCGAGCATTGCGACTAACGG+TGG + chr1.2:8297079-8297098 None:intergenic 55.0%
!! TTTTGGTGGAACGGTGGTGG+TGG + chr1.2:8296622-8296641 None:intergenic 55.0%
!!! GTGTTTTGGTGGAACGGTGG+TGG + chr1.2:8296625-8296644 None:intergenic 55.0%
AAGCAGGCCATGATCGAGGC+AGG - chr1.2:8298206-8298225 MS.gene060888:CDS 60.0%
ACGGCGGCGGTGATTGTAAC+GGG + chr1.2:8296744-8296763 None:intergenic 60.0%
AGCAGGCCATGATCGAGGCA+GGG - chr1.2:8298207-8298226 MS.gene060888:CDS 60.0%
ATCTTCCACGCCGTCAGCTG+CGG - chr1.2:8296707-8296726 MS.gene060888:CDS 60.0%
CGGCGTGGAAGATGAGACGA+CGG + chr1.2:8296700-8296719 None:intergenic 60.0%
CGTGGAAGATGAGACGACGG+AGG + chr1.2:8296697-8296716 None:intergenic 60.0%
GAAGATGAGACGACGGAGGG+AGG + chr1.2:8296693-8296712 None:intergenic 60.0%
GGCGGAGATGGAGACAGAAG+AGG - chr1.2:8296889-8296908 MS.gene060888:CDS 60.0%
TCTCCCACCACTTCCGTCTC+TGG - chr1.2:8296651-8296670 MS.gene060888:CDS 60.0%
! GCGGTGATTGTAACGGGAGG+TGG + chr1.2:8296738-8296757 None:intergenic 60.0%
! TGACTCAGAAACGGGCGTCG+AGG - chr1.2:8298273-8298292 MS.gene060888:CDS 60.0%
!! GAAACGGGCGTCGAGGCTAT+TGG - chr1.2:8298280-8298299 MS.gene060888:CDS 60.0%
! GCGGCGGTGATTGTAACGGG+AGG + chr1.2:8296741-8296760 None:intergenic 65.0%
!! CGTTGAAGGTGCTACGGCGG+CGG + chr1.2:8296757-8296776 None:intergenic 65.0%
!! GGTGGTGGTGGCCGAGAATG+AGG + chr1.2:8296607-8296626 None:intergenic 65.0%
!! TGGTGGAACGGTGGTGGTGG+TGG + chr1.2:8296619-8296638 None:intergenic 65.0%
GAGACGACGGAGGGAGGCGA+TGG + chr1.2:8296687-8296706 None:intergenic 70.0%
TTCCACGCCGTCAGCTGCGG+TGG - chr1.2:8296710-8296729 MS.gene060888:CDS 70.0%
GGTGGCGCCACCGCAGCTGA+CGG + chr1.2:8296720-8296739 None:intergenic 75.0%
! CGCCACCGCAGCTGACGGCG+TGG + chr1.2:8296715-8296734 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 8296572 8298359 8296572 ID=MS.gene060888
chr1.2 mRNA 8296572 8298359 8296572 ID=MS.gene060888.t1;Parent=MS.gene060888
chr1.2 exon 8297764 8298359 8297764 ID=MS.gene060888.t1.exon1;Parent=MS.gene060888.t1
chr1.2 CDS 8297764 8298359 8297764 ID=cds.MS.gene060888.t1;Parent=MS.gene060888.t1
chr1.2 exon 8296572 8297251 8296572 ID=MS.gene060888.t1.exon2;Parent=MS.gene060888.t1
chr1.2 CDS 8296572 8297251 8296572 ID=cds.MS.gene060888.t1;Parent=MS.gene060888.t1
Gene Sequence

>MS.gene060888

ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCATTCTCGGCCACCACCACCACCGTTCCACCAAAACACCAACATTCTCCCACCACTTCCGTCTCTGGAACTCTCTCTCCATCGCCTCCCTCCGTCGTCTCATCTTCCACGCCGTCAGCTGCGGTGGCGCCACCTCCCGTTACAATCACCGCCGCCGTAGCACCTTCAACGAATATGACACTGAAGACTTCTCTTCCTCAGCTTCCTCCTTCGACAAACGGCAACAGAATCAAACTTCAAAACCGAATGTGAAATCGGAGAAACTCTCCGATCTTCTGAACATGGCGGAGATGGAGACAGAAGAGGAAGCGAAGAAGAAGGAAGAAGCTCTAGAGAAACTTAAGAAGCTTGTGAAGGATTTGCATGAGGAAGATGATTCGGTGAAGCGGCGTGAAGCTGCGACCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTAAGAGGAACACTTTCAATGCTCGGAGCGATTCCACCGTTAGTCGCAATGCTCGATTCAAAAGACGTTGATTCTCAGATCGCTTCTCTCTACGCATTGCTCAATCTTGGAATCGGAAACGATGCGTGAGTTTCTTCATCTTCTTCGCTTTATTTTTTTATTTTTTTGTTTTTATATGTAGACAAAGTGATAAACATCGCATGAAACTCATATATACATACAACTGTAAGATCACGGGTTCGAAGTCGAGTTTAGCAATATAGACATTGTCAGTTGAATTTGTGTGTTATATTGTTAACTTTCTTTTTTTGTGGTTAGGTAATTTTGGTGGTAATTTTGATTGATTAGGTCATTTTCATTTAATAATTATTTGATTATGATTATTCTCTTTGTATTAAATTGTTAAAATGACAAGCATGTGATTTTAATTTTGGTAGTTATATATCATTTTTGTTTTTATTATTATTAATAAAGTTGTTCTGTTTTGTAATTTTTTTTTAATGTTAATGTCTATTTCTACACATGATGATGATGTGTGTTTTCATTGTTTCTTGCATATGTATGATTGTGATGTTAGGAGAATAGTGGTAAAAAGTTCATTTTTTTTATTTGGTTTTTTTTTTTTTTGTTATTACAGAAATAAAGAAGCCATTGTTAAAGTTGGTTCTGTACACAAGATGCTTAAGCTTATTGAATCTTCAGATGGTATTGATTCGGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCAGCTGCAATACCCTTTTTAGTTAGAACTCTTCAGAATAAGAATATAGATAAGAAAAGTAGCAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATCTTCCCAGCCAATGTTCAGTTTATTTTGGAAACTGATTTGGTACCGTTTCTGATAAACTCAATTGGCGACATGGGAGTAACTGAAAGAAACCTTTCAATCCTTAGCAATTTGGTATCAACTAGAGCAGGTAGAAAGGCAATAAGTGCTGTCCCGGATGTGTTTCCTATCTTGGTCGATGTATTGAATTGGAATGATTCACCTGAATGCCAGGAAAAGGTTTCGTATGTTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTTCTTGAGTTGTCGCTTATTGGTACTACTTTGACTCAGAAACGGGCGTCGAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAGGTTTCAGGGAACTACAACGGAAATTTAG
Protein sequence

>MS.gene060888.t1

MANYHRNNVGNLILGHHHHRSTKTPTFSHHFRLWNSLSIASLRRLIFHAVSCGGATSRYNHRRRSTFNEYDTEDFSSSASSFDKRQQNQTSKPNVKSEKLSDLLNMAEMETEEEAKKKEEALEKLKKLVKDLHEEDDSVKRREAATTVRMLAKENLEVRGTLSMLGAIPPLVAMLDSKDVDSQIASLYALLNLGIGNDANKEAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQNKNIDKKSSNQVKQDALRALYNLSIFPANVQFILETDLVPFLINSIGDMGVTERNLSILSNLVSTRAGRKAISAVPDVFPILVDVLNWNDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGIVSSLLELSLIGTTLTQKRASRLLESLRIDKGKQVSGNYNGNL