Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99504.t1 | XP_003623359.1 | 98.8 | 256 | 3 | 0 | 1 | 256 | 1 | 256 | 4.20E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99504.t1 | P19975 | 84.3 | 254 | 37 | 1 | 1 | 254 | 1 | 251 | 5.5e-117 | 421.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99504.t1 | G7KT76 | 98.8 | 256 | 3 | 0 | 1 | 256 | 1 | 256 | 3.0e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057173 | MS.gene99504 | 0.806577 | 7.69E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene99504 | -0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene060187 | MS.gene99504 | 0.820161 | 7.94E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene99504 | 0.807013 | 6.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29686 | MS.gene99504 | PPI |
| MS.gene071223 | MS.gene99504 | PPI |
| MS.gene004968 | MS.gene99504 | PPI |
| MS.gene76087 | MS.gene99504 | PPI |
| MS.gene07505 | MS.gene99504 | PPI |
| MS.gene86821 | MS.gene99504 | PPI |
| MS.gene99504 | MS.gene94217 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99504.t1 | MTR_7g069980 | 98.828 | 256 | 3 | 0 | 1 | 256 | 1 | 256 | 0.0 | 522 |
| MS.gene99504.t1 | MTR_4g014540 | 76.285 | 253 | 55 | 2 | 1 | 251 | 1 | 250 | 1.81e-129 | 367 |
| MS.gene99504.t1 | MTR_5g083170 | 75.124 | 201 | 50 | 0 | 55 | 255 | 48 | 248 | 1.56e-106 | 308 |
| MS.gene99504.t1 | MTR_5g083170 | 65.027 | 183 | 52 | 2 | 16 | 198 | 21 | 191 | 7.11e-74 | 224 |
| MS.gene99504.t1 | MTR_5g072560 | 69.600 | 125 | 38 | 0 | 127 | 251 | 18 | 142 | 3.36e-57 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99504.t1 | AT5G01600 | 75.122 | 205 | 51 | 0 | 47 | 251 | 51 | 255 | 2.86e-114 | 328 |
| MS.gene99504.t1 | AT2G40300 | 70.388 | 206 | 61 | 0 | 45 | 250 | 52 | 257 | 5.33e-104 | 302 |
| MS.gene99504.t1 | AT3G11050 | 69.302 | 215 | 62 | 1 | 43 | 253 | 38 | 252 | 2.10e-103 | 301 |
| MS.gene99504.t1 | AT3G56090 | 73.196 | 194 | 52 | 0 | 57 | 250 | 62 | 255 | 8.74e-100 | 292 |
| MS.gene99504.t1 | AT3G61010 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.61e-15 | 75.9 |
| MS.gene99504.t1 | AT3G61010 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.61e-15 | 75.9 |
Find 53 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7.1:+32210598 | MS.gene99504:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.188521 | 7.1:+32210804 | MS.gene99504:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7.1:+32211803 | MS.gene99504:CDS |
| GAATTTGAGCATGTGGAAAA+AGG | 0.256169 | 7.1:+32212514 | MS.gene99504:CDS |
| TATTGCTTCTTTCAGGTGTT+TGG | 0.269468 | 7.1:+32213413 | MS.gene99504:intron |
| AATGGAATTGGCTCTGTCTT+TGG | 0.292583 | 7.1:+32212666 | MS.gene99504:CDS |
| TCTGAGGGCACATTCTTGAT+AGG | 0.338948 | 7.1:-32212493 | None:intergenic |
| TGAGAGAGAAAATCCATTAA+AGG | 0.340654 | 7.1:-32210611 | None:intergenic |
| GCAGCAACGGTTCCTTTGAC+TGG | 0.348801 | 7.1:+32210730 | MS.gene99504:CDS |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7.1:-32210802 | None:intergenic |
| TGAAAAGCTTATGAAATATC+AGG | 0.391882 | 7.1:+32211988 | MS.gene99504:CDS |
| ATGGGGTGGTGGAAAGGTTA+CGG | 0.415415 | 7.1:+32210702 | MS.gene99504:CDS |
| CAATGAAGCTTGTCATTTGA+GGG | 0.428895 | 7.1:-32212860 | None:intergenic |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7.1:+32211937 | MS.gene99504:intron |
| ATGTGAGAGTTGGTAAGAAA+TGG | 0.449029 | 7.1:+32210683 | MS.gene99504:CDS |
| GGTGATATTTGAACCGTTTG+AGG | 0.456746 | 7.1:+32210753 | MS.gene99504:CDS |
| TTTGGAAATGGTGTTAAGAA+GGG | 0.465155 | 7.1:+32210640 | MS.gene99504:CDS |
| TGTGAGAGTTGGTAAGAAAT+GGG | 0.467347 | 7.1:+32210684 | MS.gene99504:CDS |
| ACCGTTTGAGGAGGTTAAGA+AGG | 0.476612 | 7.1:+32210765 | MS.gene99504:CDS |
| CAGCAACGGTTCCTTTGACT+GGG | 0.480434 | 7.1:+32210731 | MS.gene99504:CDS |
| TCAATGAAGCTTGTCATTTG+AGG | 0.489748 | 7.1:-32212861 | None:intergenic |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7.1:+32211804 | MS.gene99504:CDS |
| TCCTTCTTAACCTCCTCAAA+CGG | 0.501812 | 7.1:-32210766 | None:intergenic |
| TAAGAAATGGGGTGGTGGAA+AGG | 0.505923 | 7.1:+32210696 | MS.gene99504:CDS |
| TCAAATATCACCCCAGTCAA+AGG | 0.508905 | 7.1:-32210742 | None:intergenic |
| TAACTTGTTTAGAACGTTCG+TGG | 0.509370 | 7.1:+32212451 | MS.gene99504:intron |
| TTCCACATGCTCAAATTCTG+AGG | 0.516359 | 7.1:-32212509 | None:intergenic |
| CTGAGGGCACATTCTTGATA+GGG | 0.526116 | 7.1:-32212492 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7.1:+32213058 | MS.gene99504:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7.1:-32211803 | None:intergenic |
| TCATTTGAGGGTCATTGTTG+CGG | 0.541374 | 7.1:-32212848 | None:intergenic |
| TAGGGACAATGTGGCACTCA+GGG | 0.545838 | 7.1:+32211822 | MS.gene99504:CDS |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7.1:+32213063 | MS.gene99504:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7.1:+32213070 | MS.gene99504:CDS |
| ATAGGGACAATGTGGCACTC+AGG | 0.553669 | 7.1:+32211821 | MS.gene99504:CDS |
| TCCACATGCTCAAATTCTGA+GGG | 0.560756 | 7.1:-32212508 | None:intergenic |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7.1:+32213064 | MS.gene99504:CDS |
| GTTGGTAAGAAATGGGGTGG+TGG | 0.567662 | 7.1:+32210691 | MS.gene99504:CDS |
| AGCAACGGTTCCTTTGACTG+GGG | 0.569992 | 7.1:+32210732 | MS.gene99504:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7.1:+32210717 | MS.gene99504:CDS |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7.1:+32213053 | MS.gene99504:CDS |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7.1:-32211798 | None:intergenic |
| GATATTTGAACCGTTTGAGG+AGG | 0.609935 | 7.1:+32210756 | MS.gene99504:CDS |
| GCCCTCAGAATTTGAGCATG+TGG | 0.613924 | 7.1:+32212507 | MS.gene99504:CDS |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7.1:+32213441 | MS.gene99504:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7.1:+32213054 | MS.gene99504:CDS |
| AGAGTTGGTAAGAAATGGGG+TGG | 0.643701 | 7.1:+32210688 | MS.gene99504:CDS |
| TGACGAGCCAAAGAAACTTG+AGG | 0.656795 | 7.1:-32210811 | None:intergenic |
| CTTGTTTAGAACGTTCGTGG+CGG | 0.665468 | 7.1:+32212454 | MS.gene99504:intron |
| AAACATGGAGTGGTACACAT+AGG | 0.675664 | 7.1:-32211788 | None:intergenic |
| GTGAGAGTTGGTAAGAAATG+GGG | 0.684258 | 7.1:+32210685 | MS.gene99504:CDS |
| AGGGACAATGTGGCACTCAG+GGG | 0.690043 | 7.1:+32211823 | MS.gene99504:CDS |
| ATACTTTGATAGGGACAATG+TGG | 0.721777 | 7.1:+32211813 | MS.gene99504:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTTTATAAAAACAAA+AGG | - | chr7.1:32211671-32211690 | None:intergenic | 10.0% |
| !!! | ATATTTTCTTAAATTACTAT+CGG | + | chr7.1:32213281-32213300 | MS.gene99504:intron | 10.0% |
| !!! | TATGAATTCATATAAAATTT+TGG | + | chr7.1:32212931-32212950 | MS.gene99504:intron | 10.0% |
| !! | AAATATTAGTAGTACTAATT+TGG | - | chr7.1:32211450-32211469 | None:intergenic | 15.0% |
| !! | AATCATAATTATATCTTGAT+TGG | + | chr7.1:32211072-32211091 | MS.gene99504:intron | 15.0% |
| !! | TTTATGATTCTTAAAAATGT+TGG | - | chr7.1:32212763-32212782 | None:intergenic | 15.0% |
| !!! | AGTTTTTAAAAATCTCAAAT+GGG | + | chr7.1:32211423-32211442 | MS.gene99504:intron | 15.0% |
| !!! | TAATTCTTTTAGAAAATTAG+AGG | - | chr7.1:32211388-32211407 | None:intergenic | 15.0% |
| !!! | TAGTTTTTAAAAATCTCAAA+TGG | + | chr7.1:32211422-32211441 | MS.gene99504:intron | 15.0% |
| !! | AAGTAAAACTTAGCTAAAAA+TGG | - | chr7.1:32211100-32211119 | None:intergenic | 20.0% |
| !! | AATGAAATTGAAAAACTGTA+TGG | - | chr7.1:32211907-32211926 | None:intergenic | 20.0% |
| !! | ATGAAATTGAAAAACTGTAT+GGG | - | chr7.1:32211906-32211925 | None:intergenic | 20.0% |
| !! | ATGTGATATGTGAAATTTAT+TGG | + | chr7.1:32211492-32211511 | MS.gene99504:intron | 20.0% |
| !! | ATTTATATATTGCTTCTTTC+AGG | + | chr7.1:32213406-32213425 | MS.gene99504:intron | 20.0% |
| !! | GAAGATTTGTGAATAATAAT+AGG | + | chr7.1:32212818-32212837 | MS.gene99504:intron | 20.0% |
| !! | TGTGATATGTGAAATTTATT+GGG | + | chr7.1:32211493-32211512 | MS.gene99504:intron | 20.0% |
| !! | TGTTGATACAAATTTAGATT+TGG | + | chr7.1:32211561-32211580 | MS.gene99504:intron | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | + | chr7.1:32213107-32213126 | MS.gene99504:intron | 20.0% |
| !!! | TTCATTGAACATGAATTTTT+GGG | + | chr7.1:32212876-32212895 | MS.gene99504:CDS | 20.0% |
| !!! | TTTTTTATGTAAATTCTAGC+TGG | - | chr7.1:32211609-32211628 | None:intergenic | 20.0% |
| ! | AAGCAAAAATCAGCATAATA+CGG | - | chr7.1:32212622-32212641 | None:intergenic | 25.0% |
| ! | CTAAGATTTAAATGGTTGAT+TGG | + | chr7.1:32211013-32211032 | MS.gene99504:intron | 25.0% |
| ! | GATTTGTGAATAATAATAGG+TGG | + | chr7.1:32212821-32212840 | MS.gene99504:intron | 25.0% |
| ! | GTATGGGAAATAAAATAAGA+GGG | - | chr7.1:32211890-32211909 | None:intergenic | 25.0% |
| ! | TGAAAAGCTTATGAAATATC+AGG | + | chr7.1:32211988-32212007 | MS.gene99504:CDS | 25.0% |
| ! | TGTATGGGAAATAAAATAAG+AGG | - | chr7.1:32211891-32211910 | None:intergenic | 25.0% |
| ! | TTAACACCATTTCCAAAAAT+GGG | - | chr7.1:32210637-32210656 | None:intergenic | 25.0% |
| ! | TTTACTCATAAGAAAGATCT+AGG | + | chr7.1:32211629-32211648 | MS.gene99504:intron | 25.0% |
| !! | CTATAATTTTTCTAACCATG+TGG | + | chr7.1:32210985-32211004 | MS.gene99504:intron | 25.0% |
| !! | CTTCATTGAACATGAATTTT+TGG | + | chr7.1:32212875-32212894 | MS.gene99504:CDS | 25.0% |
| !! | GTCATATTTGAGTTTATGTT+TGG | - | chr7.1:32211863-32211882 | None:intergenic | 25.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | + | chr7.1:32210598-32210617 | MS.gene99504:CDS | 25.0% |
| !! | TTTGGTAATATTCTTTCTTC+AGG | + | chr7.1:32213006-32213025 | MS.gene99504:intron | 25.0% |
| !!! | GCTAAGTTTTACTTAATTTG+AGG | + | chr7.1:32211106-32211125 | MS.gene99504:intron | 25.0% |
| !!! | TAAGTTAGCTTTGTACTTTA+GGG | + | chr7.1:32212012-32212031 | MS.gene99504:intron | 25.0% |
| !!! | TGTAAGGGATTCATATTTTT+TGG | + | chr7.1:32212988-32213007 | MS.gene99504:intron | 25.0% |
| !!! | TTAAGTTAGCTTTGTACTTT+AGG | + | chr7.1:32212011-32212030 | MS.gene99504:intron | 25.0% |
| !!! | TTGCTTTTATTGTTGAAATC+AGG | + | chr7.1:32211927-32211946 | MS.gene99504:intron | 25.0% |
| AAAGAAACTTGAGGAACAAT+AGG | - | chr7.1:32210805-32210824 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAACTTG+TGG | - | chr7.1:32212308-32212327 | None:intergenic | 30.0% | |
| AATTAGACATTGACATGTGT+CGG | - | chr7.1:32213220-32213239 | None:intergenic | 30.0% | |
| AATTCCATTGCTGAAACAAA+AGG | - | chr7.1:32212655-32212674 | None:intergenic | 30.0% | |
| AATTTGAGCATGTGGAAAAA+GGG | + | chr7.1:32212515-32212534 | MS.gene99504:CDS | 30.0% | |
| ATCACTTAGCATAGTAACAA+TGG | - | chr7.1:32211728-32211747 | None:intergenic | 30.0% | |
| ATGTACTTGCTCATCAAAAT+TGG | - | chr7.1:32211247-32211266 | None:intergenic | 30.0% | |
| CAAAAATCGACTAATCCAAT+AGG | - | chr7.1:32211326-32211345 | None:intergenic | 30.0% | |
| CATAGATCGTACTAATTGAT+AGG | - | chr7.1:32213160-32213179 | None:intergenic | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | + | chr7.1:32211804-32211823 | MS.gene99504:CDS | 30.0% | |
| CTTAACACCATTTCCAAAAA+TGG | - | chr7.1:32210638-32210657 | None:intergenic | 30.0% | |
| GAAATTTATTGGGATCAAGT+TGG | + | chr7.1:32211503-32211522 | MS.gene99504:intron | 30.0% | |
| GAGGTAAGTAAGTTCAAATA+AGG | - | chr7.1:32212051-32212070 | None:intergenic | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | + | chr7.1:32210804-32210823 | MS.gene99504:CDS | 30.0% | |
| TATTTGATCTGTAGTTGTCA+AGG | + | chr7.1:32212784-32212803 | MS.gene99504:intron | 30.0% | |
| TCACTTAGCATAGTAACAAT+GGG | - | chr7.1:32211727-32211746 | None:intergenic | 30.0% | |
| TGAGAGAGAAAATCCATTAA+AGG | - | chr7.1:32210614-32210633 | None:intergenic | 30.0% | |
| TGGTTGGACTAAGATTTAAA+TGG | + | chr7.1:32211005-32211024 | MS.gene99504:intron | 30.0% | |
| TTGTGAATAATAATAGGTGG+CGG | + | chr7.1:32212824-32212843 | MS.gene99504:intron | 30.0% | |
| ! | AAAGTTGCTTTAGCAATGTA+AGG | + | chr7.1:32212972-32212991 | MS.gene99504:intron | 30.0% |
| ! | AAGTTGCTTTAGCAATGTAA+GGG | + | chr7.1:32212973-32212992 | MS.gene99504:intron | 30.0% |
| ! | AATTTTTCTAACCATGTGGT+TGG | + | chr7.1:32210989-32211008 | MS.gene99504:intron | 30.0% |
| ! | ATTGATAGGTGTTATGTGTA+AGG | - | chr7.1:32213146-32213165 | None:intergenic | 30.0% |
| ! | TGTCTCACACATTATAGTTT+TGG | + | chr7.1:32212577-32212596 | MS.gene99504:intron | 30.0% |
| ! | TTTGGAAATGGTGTTAAGAA+GGG | + | chr7.1:32210640-32210659 | MS.gene99504:CDS | 30.0% |
| ! | TTTTAATCCTCCAATTTCCA+AGG | - | chr7.1:32211156-32211175 | None:intergenic | 30.0% |
| ! | TTTTCTTCTTTTGCATGCAT+TGG | + | chr7.1:32211692-32211711 | MS.gene99504:intron | 30.0% |
| !! | ACACCTTTAATTTGAAGTGT+CGG | - | chr7.1:32213188-32213207 | None:intergenic | 30.0% |
| !! | TATTCCTTTTGTTTCAGCAA+TGG | + | chr7.1:32212648-32212667 | MS.gene99504:intron | 30.0% |
| !! | TTTTGGAAATGGTGTTAAGA+AGG | + | chr7.1:32210639-32210658 | MS.gene99504:CDS | 30.0% |
| !! | TTTTGTTTCAGCAATGGAAT+TGG | + | chr7.1:32212654-32212673 | MS.gene99504:intron | 30.0% |
| !!! | CTATTGGATTAGTCGATTTT+TGG | + | chr7.1:32211324-32211343 | MS.gene99504:intron | 30.0% |
| AAAAAGCTAAAGGGACAAAG+AGG | - | chr7.1:32212736-32212755 | None:intergenic | 35.0% | |
| AATGATTCCTTGGAAATTGG+AGG | + | chr7.1:32211146-32211165 | MS.gene99504:intron | 35.0% | |
| ACCAATGATTCCTTGGAAAT+TGG | + | chr7.1:32211143-32211162 | MS.gene99504:intron | 35.0% | |
| AGTATGTGTCTCAATTGAGA+AGG | + | chr7.1:32213053-32213072 | MS.gene99504:CDS | 35.0% | |
| ATACTTTGATAGGGACAATG+TGG | + | chr7.1:32211813-32211832 | MS.gene99504:CDS | 35.0% | |
| ATTTGAGCATGTGGAAAAAG+GGG | + | chr7.1:32212516-32212535 | MS.gene99504:CDS | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | + | chr7.1:32211803-32211822 | MS.gene99504:CDS | 35.0% | |
| CCTATCAAAGTATGCAAACA+TGG | - | chr7.1:32211806-32211825 | None:intergenic | 35.0% | |
| CTAAATGCATGTGTTGTATC+CGG | + | chr7.1:32213307-32213326 | MS.gene99504:intron | 35.0% | |
| CTAGATTACCAATGATTCCT+TGG | + | chr7.1:32211136-32211155 | MS.gene99504:intron | 35.0% | |
| CTCATCAAAATTGGCATTAG+AGG | - | chr7.1:32211238-32211257 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | + | chr7.1:32212322-32212341 | MS.gene99504:intron | 35.0% | |
| CTTCATAGTGTAACACTGTT+TGG | + | chr7.1:32212252-32212271 | MS.gene99504:intron | 35.0% | |
| GAATTTGAGCATGTGGAAAA+AGG | + | chr7.1:32212514-32212533 | MS.gene99504:CDS | 35.0% | |
| GAGGAAATCAAATTTGTGTG+TGG | - | chr7.1:32211219-32211238 | None:intergenic | 35.0% | |
| GGTCTTACAAGTACTTATTG+AGG | - | chr7.1:32212070-32212089 | None:intergenic | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | + | chr7.1:32213054-32213073 | MS.gene99504:CDS | 35.0% | |
| GTTGGCAAGAAAAAGCTAAA+GGG | - | chr7.1:32212745-32212764 | None:intergenic | 35.0% | |
| TAAATCTTAGTCCAACCACA+TGG | - | chr7.1:32211003-32211022 | None:intergenic | 35.0% | |
| TACTCCATGAAACACTTAGA+CGG | - | chr7.1:32213342-32213361 | None:intergenic | 35.0% | |
| TATGAAGCACAAACACTCAT+CGG | - | chr7.1:32212239-32212258 | None:intergenic | 35.0% | |
| TATGTGTAAGGCAAAGTTTG+TGG | - | chr7.1:32213134-32213153 | None:intergenic | 35.0% | |
| TCCAATTTCCAAGGAATCAT+TGG | - | chr7.1:32211147-32211166 | None:intergenic | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | + | chr7.1:32213441-32213460 | MS.gene99504:CDS | 35.0% | |
| TGCTGAAACAAAAGGAATAG+AGG | - | chr7.1:32212647-32212666 | None:intergenic | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | + | chr7.1:32211937-32211956 | MS.gene99504:intron | 35.0% | |
| TGTTGGCAAGAAAAAGCTAA+AGG | - | chr7.1:32212746-32212765 | None:intergenic | 35.0% | |
| ! | CAATGAAGCTTGTCATTTGA+GGG | - | chr7.1:32212863-32212882 | None:intergenic | 35.0% |
| ! | CTTCAAATTAAAGGTGTGTC+TGG | + | chr7.1:32213191-32213210 | MS.gene99504:intron | 35.0% |
| ! | CTTTTAGTCAAGCAAATGTC+TGG | - | chr7.1:32212385-32212404 | None:intergenic | 35.0% |
| ! | TATTGCTTCTTTCAGGTGTT+TGG | + | chr7.1:32213413-32213432 | MS.gene99504:intron | 35.0% |
| ! | TCAATGAAGCTTGTCATTTG+AGG | - | chr7.1:32212864-32212883 | None:intergenic | 35.0% |
| ! | TCTTTTTGTGATGTGAGAGT+TGG | + | chr7.1:32210673-32210692 | MS.gene99504:CDS | 35.0% |
| ! | TTTTCATTTGTGTGACAGTG+TGG | + | chr7.1:32211753-32211772 | MS.gene99504:intron | 35.0% |
| ! | TTTTCTCTCTCACCCATTTT+TGG | + | chr7.1:32210622-32210641 | MS.gene99504:CDS | 35.0% |
| !! | ATGTGAGAGTTGGTAAGAAA+TGG | + | chr7.1:32210683-32210702 | MS.gene99504:CDS | 35.0% |
| !! | TAACTTGTTTAGAACGTTCG+TGG | + | chr7.1:32212451-32212470 | MS.gene99504:intron | 35.0% |
| !! | TGTGAGAGTTGGTAAGAAAT+GGG | + | chr7.1:32210684-32210703 | MS.gene99504:CDS | 35.0% |
| !!! | AGTTGTGCTCTAGTTTTAAG+CGG | + | chr7.1:32211271-32211290 | MS.gene99504:intron | 35.0% |
| AAACATGGAGTGGTACACAT+AGG | - | chr7.1:32211791-32211810 | None:intergenic | 40.0% | |
| AAACTGTCCTGAAGAGCTTA+TGG | - | chr7.1:32212332-32212351 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | - | chr7.1:32211801-32211820 | None:intergenic | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | + | chr7.1:32213064-32213083 | MS.gene99504:CDS | 40.0% | |
| CCACCGACACTTCAAATTAA+AGG | + | chr7.1:32213182-32213201 | MS.gene99504:intron | 40.0% | |
| CTTGTAAGACCTATGAAGCA+CGG | + | chr7.1:32212079-32212098 | MS.gene99504:intron | 40.0% | |
| GATATTTGAACCGTTTGAGG+AGG | + | chr7.1:32210756-32210775 | MS.gene99504:CDS | 40.0% | |
| GGATAAATACACTCCACTCA+AGG | + | chr7.1:32211582-32211601 | MS.gene99504:intron | 40.0% | |
| GGTGATATTTGAACCGTTTG+AGG | + | chr7.1:32210753-32210772 | MS.gene99504:CDS | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | + | chr7.1:32213359-32213378 | MS.gene99504:intron | 40.0% | |
| TCAAATATCACCCCAGTCAA+AGG | - | chr7.1:32210745-32210764 | None:intergenic | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | + | chr7.1:32213063-32213082 | MS.gene99504:CDS | 40.0% | |
| TCATTTGAGGGTCATTGTTG+CGG | - | chr7.1:32212851-32212870 | None:intergenic | 40.0% | |
| TCCACATGCTCAAATTCTGA+GGG | - | chr7.1:32212511-32212530 | None:intergenic | 40.0% | |
| TCCTTCTTAACCTCCTCAAA+CGG | - | chr7.1:32210769-32210788 | None:intergenic | 40.0% | |
| TTCAGTGTGATCACATGTGT+CGG | + | chr7.1:32212160-32212179 | MS.gene99504:intron | 40.0% | |
| TTCCACATGCTCAAATTCTG+AGG | - | chr7.1:32212512-32212531 | None:intergenic | 40.0% | |
| ! | TTGCATGGTGAGTTTGTTTC+TGG | + | chr7.1:32212544-32212563 | MS.gene99504:intron | 40.0% |
| !! | AATGGAATTGGCTCTGTCTT+TGG | + | chr7.1:32212666-32212685 | MS.gene99504:CDS | 40.0% |
| !! | ACATGAATTTTTGGGCGAAC+AGG | + | chr7.1:32212884-32212903 | MS.gene99504:CDS | 40.0% |
| !! | CCTTTAATTTGAAGTGTCGG+TGG | - | chr7.1:32213185-32213204 | None:intergenic | 40.0% |
| !! | CTCTCACCCATTTTTGGAAA+TGG | + | chr7.1:32210628-32210647 | MS.gene99504:CDS | 40.0% |
| !! | GTGAGAGTTGGTAAGAAATG+GGG | + | chr7.1:32210685-32210704 | MS.gene99504:CDS | 40.0% |
| !! | TAGCTTTGTACTTTAGGGTC+TGG | + | chr7.1:32212017-32212036 | MS.gene99504:intron | 40.0% |
| !!! | GTTGTGCTCTAGTTTTAAGC+GGG | + | chr7.1:32211272-32211291 | MS.gene99504:intron | 40.0% |
| !!! | TTGTGCTCTAGTTTTAAGCG+GGG | + | chr7.1:32211273-32211292 | MS.gene99504:intron | 40.0% |
| ACCGTTTGAGGAGGTTAAGA+AGG | + | chr7.1:32210765-32210784 | MS.gene99504:CDS | 45.0% | |
| AGACCTATGAAGCACGGATA+CGG | + | chr7.1:32212085-32212104 | MS.gene99504:intron | 45.0% | |
| CTAATTTAGACACGTGTGCG+TGG | + | chr7.1:32213234-32213253 | MS.gene99504:intron | 45.0% | |
| GAAAAAGGGGATGCATTGCA+TGG | + | chr7.1:32212529-32212548 | MS.gene99504:CDS | 45.0% | |
| GTGTCCGTCTAAGTGTTTCA+TGG | + | chr7.1:32213335-32213354 | MS.gene99504:intron | 45.0% | |
| GTGTCTCAATTGAGAAGGGT+TGG | + | chr7.1:32213058-32213077 | MS.gene99504:CDS | 45.0% | |
| TGACGAGCCAAAGAAACTTG+AGG | - | chr7.1:32210814-32210833 | None:intergenic | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | + | chr7.1:32213362-32213381 | MS.gene99504:intron | 45.0% | |
| ! | AATTCTAGCTGGACCTTGAG+TGG | - | chr7.1:32211598-32211617 | None:intergenic | 45.0% |
| ! | CTGAGGGCACATTCTTGATA+GGG | - | chr7.1:32212495-32212514 | None:intergenic | 45.0% |
| ! | CTTGTTTAGAACGTTCGTGG+CGG | + | chr7.1:32212454-32212473 | MS.gene99504:intron | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+AGG | - | chr7.1:32212496-32212515 | None:intergenic | 45.0% |
| !! | AGAGTTGGTAAGAAATGGGG+TGG | + | chr7.1:32210688-32210707 | MS.gene99504:CDS | 45.0% |
| !! | CTTAAGAGTGTCCACCACAT+AGG | - | chr7.1:32213376-32213395 | None:intergenic | 45.0% |
| !! | TAAGAAATGGGGTGGTGGAA+AGG | + | chr7.1:32210696-32210715 | MS.gene99504:CDS | 45.0% |
| ACTTAGACGGACACGAACAC+CGG | - | chr7.1:32213329-32213348 | None:intergenic | 50.0% | |
| AGAAGGGTTGGAAAGGGTCA+TGG | + | chr7.1:32213070-32213089 | MS.gene99504:CDS | 50.0% | |
| AGCAACGGTTCCTTTGACTG+GGG | + | chr7.1:32210732-32210751 | MS.gene99504:CDS | 50.0% | |
| ATAGGGACAATGTGGCACTC+AGG | + | chr7.1:32211821-32211840 | MS.gene99504:CDS | 50.0% | |
| CAGCAACGGTTCCTTTGACT+GGG | + | chr7.1:32210731-32210750 | MS.gene99504:CDS | 50.0% | |
| GCACAAACACTCATCGGATC+AGG | - | chr7.1:32212233-32212252 | None:intergenic | 50.0% | |
| GCCCTCAGAATTTGAGCATG+TGG | + | chr7.1:32212507-32212526 | MS.gene99504:CDS | 50.0% | |
| GGTTACGGTTTGTGCAGCAA+CGG | + | chr7.1:32210717-32210736 | MS.gene99504:CDS | 50.0% | |
| GTCAGCGTTCATGTCGTGTA+CGG | - | chr7.1:32212114-32212133 | None:intergenic | 50.0% | |
| TAGGGACAATGTGGCACTCA+GGG | + | chr7.1:32211822-32211841 | MS.gene99504:CDS | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | chr7.1:32212091-32212110 | None:intergenic | 50.0% | |
| ! | GTTGGTAAGAAATGGGGTGG+TGG | + | chr7.1:32210691-32210710 | MS.gene99504:CDS | 50.0% |
| !! | AAGAGTGTCCACCACATAGG+AGG | - | chr7.1:32213373-32213392 | None:intergenic | 50.0% |
| !! | ATGGGGTGGTGGAAAGGTTA+CGG | + | chr7.1:32210702-32210721 | MS.gene99504:CDS | 50.0% |
| AATCACACCGCCCATTTGCG+GGG | - | chr7.1:32211300-32211319 | None:intergenic | 55.0% | |
| AGGGACAATGTGGCACTCAG+GGG | + | chr7.1:32211823-32211842 | MS.gene99504:CDS | 55.0% | |
| CAATCACACCGCCCATTTGC+GGG | - | chr7.1:32211301-32211320 | None:intergenic | 55.0% | |
| CCAATCACACCGCCCATTTG+CGG | - | chr7.1:32211302-32211321 | None:intergenic | 55.0% | |
| GCAGCAACGGTTCCTTTGAC+TGG | + | chr7.1:32210730-32210749 | MS.gene99504:CDS | 55.0% | |
| ! | GGCGGTGTGATTGGTCCTAT+TGG | + | chr7.1:32211308-32211327 | MS.gene99504:intron | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+CGG | + | chr7.1:32212171-32212190 | MS.gene99504:intron | 55.0% |
| CCGCAAATGGGCGGTGTGAT+TGG | + | chr7.1:32211299-32211318 | MS.gene99504:intron | 60.0% | |
| TAAGCGGGGACCCCGCAAAT+GGG | + | chr7.1:32211287-32211306 | MS.gene99504:intron | 60.0% | |
| TCATCGGATCAGGCGTGTCC+CGG | - | chr7.1:32212223-32212242 | None:intergenic | 60.0% | |
| TTAAGCGGGGACCCCGCAAA+TGG | + | chr7.1:32211286-32211305 | MS.gene99504:intron | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+TGG | + | chr7.1:32212177-32212196 | MS.gene99504:intron | 60.0% |
| ACCGATGCGTGTCCGACACC+GGG | + | chr7.1:32212202-32212221 | MS.gene99504:intron | 65.0% | |
| CACCGATGCGTGTCCGACAC+CGG | + | chr7.1:32212201-32212220 | MS.gene99504:intron | 65.0% | |
| GATCAGGCGTGTCCCGGTGT+CGG | - | chr7.1:32212217-32212236 | None:intergenic | 65.0% | |
| ! | TCCCGGTGTCGGACACGCAT+CGG | - | chr7.1:32212206-32212225 | None:intergenic | 65.0% |
| GCGGGGACCCCGCAAATGGG+CGG | + | chr7.1:32211290-32211309 | MS.gene99504:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32210583 | 32213477 | 32210583 | ID=MS.gene99504 |
| chr7.1 | mRNA | 32210583 | 32213477 | 32210583 | ID=MS.gene99504.t1;Parent=MS.gene99504 |
| chr7.1 | exon | 32210583 | 32210878 | 32210583 | ID=MS.gene99504.t1.exon1;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32210583 | 32210878 | 32210583 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32211771 | 32211854 | 32211771 | ID=MS.gene99504.t1.exon2;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32211771 | 32211854 | 32211771 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32211949 | 32212009 | 32211949 | ID=MS.gene99504.t1.exon3;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32211949 | 32212009 | 32211949 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32212463 | 32212550 | 32212463 | ID=MS.gene99504.t1.exon4;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32212463 | 32212550 | 32212463 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32212665 | 32212726 | 32212665 | ID=MS.gene99504.t1.exon5;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32212665 | 32212726 | 32212665 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32212840 | 32212905 | 32212840 | ID=MS.gene99504.t1.exon6;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32212840 | 32212905 | 32212840 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32213028 | 32213091 | 32213028 | ID=MS.gene99504.t1.exon7;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32213028 | 32213091 | 32213028 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| chr7.1 | exon | 32213428 | 32213477 | 32213428 | ID=MS.gene99504.t1.exon8;Parent=MS.gene99504.t1 |
| chr7.1 | CDS | 32213428 | 32213477 | 32213428 | ID=cds.MS.gene99504.t1;Parent=MS.gene99504.t1 |
| Gene Sequence |
| Protein sequence |
