Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87152.t1 | XP_013448244.1 | 94.4 | 391 | 21 | 1 | 1 | 390 | 1 | 391 | 5.10E-174 | 620.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87152.t1 | Q6PJ69 | 42.6 | 68 | 39 | 0 | 151 | 218 | 6 | 73 | 1.1e-10 | 69.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87152.t1 | A0A072TYL1 | 94.4 | 391 | 21 | 1 | 1 | 390 | 1 | 391 | 3.7e-174 | 620.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene87152 | 0.829457 | 5.09E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene87152 | 0.806555 | 7.77E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene87152 | 0.841625 | 4.24E-58 | -1.69E-46 |
| MS.gene052308 | MS.gene87152 | 0.844521 | 7.18E-59 | -1.69E-46 |
| MS.gene052367 | MS.gene87152 | 0.842956 | 1.88E-58 | -1.69E-46 |
| MS.gene053416 | MS.gene87152 | 0.82237 | 2.46E-53 | -1.69E-46 |
| MS.gene053417 | MS.gene87152 | 0.817345 | 3.46E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene87152 | 0.82092 | 5.32E-53 | -1.69E-46 |
| MS.gene055578 | MS.gene87152 | 0.869805 | 2.35E-66 | -1.69E-46 |
| MS.gene055579 | MS.gene87152 | 0.830135 | 3.48E-55 | -1.69E-46 |
| MS.gene055957 | MS.gene87152 | 0.856966 | 2.25E-62 | -1.69E-46 |
| MS.gene056041 | MS.gene87152 | 0.875695 | 2.52E-68 | -1.69E-46 |
| MS.gene056042 | MS.gene87152 | 0.824004 | 1.02E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene87152 | 0.840987 | 6.24E-58 | -1.69E-46 |
| MS.gene056526 | MS.gene87152 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene056528 | MS.gene87152 | 0.802194 | 6.30E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene87152 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene058128 | MS.gene87152 | 0.808101 | 3.65E-50 | -1.69E-46 |
| MS.gene058196 | MS.gene87152 | 0.812555 | 4.00E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene87152 | 0.823763 | 1.16E-53 | -1.69E-46 |
| MS.gene059553 | MS.gene87152 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene87152 | 0.852109 | 5.73E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene87152 | 0.841729 | 3.98E-58 | -1.69E-46 |
| MS.gene06057 | MS.gene87152 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene061099 | MS.gene87152 | 0.873233 | 1.72E-67 | -1.69E-46 |
| MS.gene061260 | MS.gene87152 | 0.850839 | 1.31E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87152.t1 | MTR_7g035445 | 96.675 | 391 | 12 | 1 | 1 | 390 | 1 | 391 | 0.0 | 769 |
| MS.gene87152.t1 | MTR_7g035455 | 54.331 | 127 | 38 | 3 | 126 | 242 | 123 | 239 | 1.47e-35 | 130 |
| MS.gene87152.t1 | MTR_1g093975 | 48.148 | 108 | 55 | 1 | 136 | 243 | 1 | 107 | 2.23e-28 | 108 |
| MS.gene87152.t1 | MTR_1g094005 | 48.148 | 108 | 55 | 1 | 136 | 243 | 1 | 107 | 2.23e-28 | 108 |
| MS.gene87152.t1 | MTR_0044s0160 | 45.631 | 103 | 31 | 4 | 174 | 273 | 18 | 98 | 1.45e-17 | 79.0 |
| MS.gene87152.t1 | MTR_3g037230 | 36.275 | 102 | 63 | 2 | 127 | 227 | 160 | 260 | 3.12e-15 | 77.4 |
| MS.gene87152.t1 | MTR_3g037230 | 36.275 | 102 | 63 | 2 | 127 | 227 | 113 | 213 | 3.29e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87152.t1 | AT3G27330 | 45.380 | 368 | 148 | 11 | 20 | 381 | 589 | 909 | 8.12e-72 | 241 |
| MS.gene87152.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 153 | 233 | 192 | 272 | 7.45e-17 | 82.4 |
| MS.gene87152.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 153 | 233 | 192 | 272 | 7.55e-17 | 82.4 |
| MS.gene87152.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 153 | 233 | 192 | 272 | 7.55e-17 | 82.4 |
| MS.gene87152.t1 | AT1G18660 | 45.122 | 82 | 43 | 2 | 153 | 233 | 192 | 272 | 7.55e-17 | 82.4 |
Find 88 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTCTAATATTTA+AGG | 0.118236 | 7.4:+63839712 | None:intergenic |
| TTATTGTAAAATGCTGTTTC+TGG | 0.158375 | 7.4:+63839674 | None:intergenic |
| CAGGGGTATCTTCAACAATT+AGG | 0.202307 | 7.4:+63841472 | None:intergenic |
| TTAATGATAATTACCTTTCT+TGG | 0.217346 | 7.4:+63841079 | None:intergenic |
| GTTCAATTTCTTGAGGAAAT+AGG | 0.236241 | 7.4:+63839756 | None:intergenic |
| CTGATCAATTGTCTGCATTT+AGG | 0.237049 | 7.4:+63840112 | None:intergenic |
| TAAAATGCTGTTTCTGGAAT+TGG | 0.263282 | 7.4:+63839680 | None:intergenic |
| TTCTGCTGCTCTTCCTTGTA+TGG | 0.277583 | 7.4:-63840505 | MS.gene87152:CDS |
| TCATGATTACCTTGATGAAT+TGG | 0.313369 | 7.4:+63841389 | None:intergenic |
| CATCATCCAGTATTATTTCC+TGG | 0.319089 | 7.4:+63839591 | None:intergenic |
| TAATGATAATTACCTTTCTT+GGG | 0.320688 | 7.4:+63841080 | None:intergenic |
| CAAGTAGGGGTATGAATTCT+AGG | 0.342271 | 7.4:-63839619 | MS.gene87152:CDS |
| TGCTGCTGCTATGGCTGGTT+GGG | 0.344885 | 7.4:-63841520 | MS.gene87152:CDS |
| TCGTTGTTGTCGATGTTCTA+TGG | 0.348545 | 7.4:+63839510 | None:intergenic |
| GTGTAAGAGGGAGGACAAGA+AGG | 0.357536 | 7.4:-63839439 | MS.gene87152:CDS |
| AAGATGCTGCATTTGCTCTA+AGG | 0.363988 | 7.4:-63839397 | MS.gene87152:CDS |
| ATACCCCTACTTGATGGATA+TGG | 0.366991 | 7.4:+63839629 | None:intergenic |
| AGGGGTATCTTCAACAATTA+GGG | 0.379967 | 7.4:+63841473 | None:intergenic |
| TGATAAGCGAAGCCATGTTT+TGG | 0.386216 | 7.4:+63841559 | None:intergenic |
| GAATTCATACCCCTACTTGA+TGG | 0.390998 | 7.4:+63839623 | None:intergenic |
| GCTGAATGCTTCTATTCCTT+CGG | 0.391782 | 7.4:+63839651 | None:intergenic |
| TGTAAGAGGGAGGACAAGAA+GGG | 0.397476 | 7.4:-63839438 | MS.gene87152:CDS |
| GAGAAACCAGGAAATAATAC+TGG | 0.403836 | 7.4:-63839597 | MS.gene87152:CDS |
| ACATCCTTCGATCTCTATTA+CGG | 0.407073 | 7.4:+63839258 | None:intergenic |
| AGGAAGTAAAGTAGGAGAAA+AGG | 0.414168 | 7.4:-63840568 | MS.gene87152:CDS |
| CTGCTGCTGCTATGGCTGGT+TGG | 0.431944 | 7.4:-63841521 | MS.gene87152:CDS |
| TCCACCACAACCGATTGTTC+TGG | 0.433857 | 7.4:-63841123 | MS.gene87152:CDS |
| TCATCATCAATAAGTGTAAG+AGG | 0.433883 | 7.4:-63839452 | MS.gene87152:CDS |
| TGATGATGAGGATGCTGAAT+TGG | 0.437088 | 7.4:-63839573 | MS.gene87152:CDS |
| TTAGAATCTCGATCTCGATC+AGG | 0.437867 | 7.4:+63841453 | None:intergenic |
| AGGATGCTGAATTGGCTAGA+AGG | 0.444958 | 7.4:-63839565 | MS.gene87152:CDS |
| TCGACAACAACGAGGGTTCA+TGG | 0.454204 | 7.4:-63839500 | MS.gene87152:CDS |
| TATTAGCTAGAGAAAATTTG+AGG | 0.460411 | 7.4:-63839307 | MS.gene87152:CDS |
| CAAATGCAGCATCTTCATCT+TGG | 0.463007 | 7.4:+63839405 | None:intergenic |
| GTGCTAGCAGCAACTTTCCT+AGG | 0.466001 | 7.4:+63839734 | None:intergenic |
| AAATCTGCTGCTGCTATGGC+TGG | 0.467802 | 7.4:-63841525 | MS.gene87152:CDS |
| AGAAAAGGAATTGATTCAGA+AGG | 0.468886 | 7.4:-63840553 | MS.gene87152:CDS |
| GTTAATGAAGGAAGTAAAGT+AGG | 0.469630 | 7.4:-63840576 | MS.gene87152:CDS |
| ATTCAAATCTGCTGCTGCTA+TGG | 0.473535 | 7.4:-63841529 | MS.gene87152:CDS |
| TTCTCTAGCTAATAAATTGG+AGG | 0.476407 | 7.4:+63839316 | None:intergenic |
| CTAAATGCAGACAATTGATC+AGG | 0.479826 | 7.4:-63840111 | MS.gene87152:intron |
| TAGAGAAAATTTGAGGGCTA+TGG | 0.493703 | 7.4:-63839300 | MS.gene87152:CDS |
| TGACCACAAGGAGTGGTACT+TGG | 0.499092 | 7.4:+63840337 | None:intergenic |
| GGGTTCATGGTGGTAATTCA+AGG | 0.501442 | 7.4:-63839487 | MS.gene87152:CDS |
| TCTCTTAGCTTATCCATACA+AGG | 0.507539 | 7.4:+63840492 | None:intergenic |
| TGTTTAGGAAACGCAGAGCT+AGG | 0.509681 | 7.4:-63841148 | MS.gene87152:intron |
| ATTAGCTAGAGAAAATTTGA+GGG | 0.509766 | 7.4:-63839306 | MS.gene87152:CDS |
| TAAGAGGGAGGACAAGAAGG+GGG | 0.515962 | 7.4:-63839436 | MS.gene87152:CDS |
| TCATCGAGATCCAGAACAAT+CGG | 0.518971 | 7.4:+63841113 | None:intergenic |
| GCAGCAGCAGATTTGAATCT+CGG | 0.519442 | 7.4:+63841534 | None:intergenic |
| TGGAGGAAGATGACTGTGCC+TGG | 0.521867 | 7.4:+63839333 | None:intergenic |
| TTCCTAGGTTCAATTTCTTG+AGG | 0.522235 | 7.4:+63839749 | None:intergenic |
| TACACTTATTGATGATGATG+AGG | 0.524665 | 7.4:+63839457 | None:intergenic |
| AATGATAATTACCTTTCTTG+GGG | 0.530697 | 7.4:+63841081 | None:intergenic |
| ATTGTTCTGGATCTCGATGA+AGG | 0.541428 | 7.4:-63841110 | MS.gene87152:CDS |
| TGCTCTAAGGTTGCAAAGAG+AGG | 0.541925 | 7.4:-63839384 | MS.gene87152:CDS |
| GTAAGAGGGAGGACAAGAAG+GGG | 0.546725 | 7.4:-63839437 | MS.gene87152:CDS |
| CTCCGCTCTCCAATTCATCA+AGG | 0.547530 | 7.4:-63841398 | MS.gene87152:intron |
| GGCTATGGCAACTAGAGCAA+TGG | 0.550394 | 7.4:-63839285 | MS.gene87152:CDS |
| TAGAATCTCGATCTCGATCA+GGG | 0.558922 | 7.4:+63841454 | None:intergenic |
| TTCAGCCATATCCATCAAGT+AGG | 0.563313 | 7.4:-63839634 | MS.gene87152:CDS |
| GTACCACTCCTTGTGGTCAC+AGG | 0.564856 | 7.4:-63840333 | MS.gene87152:intron |
| GAAAAGGAATTGATTCAGAA+GGG | 0.573764 | 7.4:-63840552 | MS.gene87152:CDS |
| AGGTTACAAAGAGAACTTGA+TGG | 0.575098 | 7.4:-63839545 | MS.gene87152:CDS |
| TCCAGAACAATCGGTTGTGG+TGG | 0.581128 | 7.4:+63841122 | None:intergenic |
| AAGAGGGAGGACAAGAAGGG+GGG | 0.581947 | 7.4:-63839435 | MS.gene87152:CDS |
| TCAGCCATATCCATCAAGTA+GGG | 0.584477 | 7.4:-63839633 | MS.gene87152:CDS |
| AGATCCAGAACAATCGGTTG+TGG | 0.586599 | 7.4:+63841119 | None:intergenic |
| CATCATCAATAAGTGTAAGA+GGG | 0.598286 | 7.4:-63839451 | MS.gene87152:CDS |
| TACCTTGATGAATTGGAGAG+CGG | 0.617422 | 7.4:+63841396 | None:intergenic |
| ATTTAATACCTGTGACCACA+AGG | 0.619480 | 7.4:+63840325 | None:intergenic |
| ATGATAATTACCTTTCTTGG+GGG | 0.621971 | 7.4:+63841082 | None:intergenic |
| AATAATACTGGATGATGATG+AGG | 0.630102 | 7.4:-63839585 | MS.gene87152:CDS |
| TTCCTCAAGAAATTGAACCT+AGG | 0.630549 | 7.4:-63839751 | MS.gene87152:CDS |
| ATACCTGTGACCACAAGGAG+TGG | 0.653809 | 7.4:+63840330 | None:intergenic |
| GAGCCAAGTACCACTCCTTG+TGG | 0.657194 | 7.4:-63840340 | MS.gene87152:CDS |
| TATGAATTCTAGGAGAAACC+AGG | 0.658367 | 7.4:-63839609 | MS.gene87152:CDS |
| GTTGTTGATGAACAGATAGT+GGG | 0.665792 | 7.4:-63840626 | MS.gene87152:intron |
| GCACTGTGAACACAGTTCTG+TGG | 0.666030 | 7.4:-63839793 | MS.gene87152:CDS |
| CATCAATAAGTGTAAGAGGG+AGG | 0.669182 | 7.4:-63839448 | MS.gene87152:CDS |
| AGATCTGCTGCAGACAAGTG+TGG | 0.672145 | 7.4:-63840145 | MS.gene87152:CDS |
| CAGCCATATCCATCAAGTAG+GGG | 0.675531 | 7.4:-63839632 | MS.gene87152:CDS |
| ATCTCCGTAATAGAGATCGA+AGG | 0.690694 | 7.4:-63839262 | MS.gene87152:CDS |
| AGCGACGAATAGCCAAAACA+TGG | 0.697063 | 7.4:-63841571 | MS.gene87152:CDS |
| AGAATCTCGATCTCGATCAG+GGG | 0.709311 | 7.4:+63841455 | None:intergenic |
| TAGAACATCGACAACAACGA+GGG | 0.710209 | 7.4:-63839507 | MS.gene87152:CDS |
| ATAGAACATCGACAACAACG+AGG | 0.769880 | 7.4:-63839508 | MS.gene87152:CDS |
| ACAACAACGAGGGTTCATGG+TGG | 0.784670 | 7.4:-63839497 | MS.gene87152:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATCATTAATTTTGAT+TGG | - | chr7.4:63839808-63839827 | MS.gene87152:CDS | 10.0% |
| !!! | TTTTTTATTCTATTTTGTTT+TGG | - | chr7.4:63840439-63840458 | MS.gene87152:intron | 10.0% |
| !! | AAAAAAACATCAAATTCAAA+TGG | + | chr7.4:63839546-63839565 | None:intergenic | 15.0% |
| !! | AAAAAACATCAAATTCAAAT+GGG | + | chr7.4:63839545-63839564 | None:intergenic | 15.0% |
| !!! | AATTGGATTAGTTTAATTAA+TGG | - | chr7.4:63839684-63839703 | MS.gene87152:CDS | 15.0% |
| !!! | ATTGGATTAGTTTAATTAAT+GGG | - | chr7.4:63839685-63839704 | MS.gene87152:CDS | 15.0% |
| !!! | ATTTCATTAGTTTTGTTATT+GGG | - | chr7.4:63839603-63839622 | MS.gene87152:CDS | 15.0% |
| !!! | ATTTGAATTTGATGTTTTTT+TGG | - | chr7.4:63839545-63839564 | MS.gene87152:CDS | 15.0% |
| !!! | GGTTTTTTTATTAAGAATAT+TGG | - | chr7.4:63839659-63839678 | MS.gene87152:CDS | 15.0% |
| !!! | TATTAAGAATATTGGTTAAT+TGG | - | chr7.4:63839667-63839686 | MS.gene87152:CDS | 15.0% |
| !!! | TGATTTTTTGTGTTAAATAT+TGG | - | chr7.4:63839638-63839657 | MS.gene87152:CDS | 15.0% |
| !! | AAAAACATCAAATTCAAATG+GGG | + | chr7.4:63839544-63839563 | None:intergenic | 20.0% |
| !! | AAGAAAAATTGTGTTAATGA+AGG | - | chr7.4:63840289-63840308 | MS.gene87152:intron | 20.0% |
| !! | AATTAAATGACATATAAGCA+AGG | - | chr7.4:63840822-63840841 | MS.gene87152:intron | 20.0% |
| !! | ATTGCAGTATACATATAATT+AGG | + | chr7.4:63840962-63840981 | None:intergenic | 20.0% |
| !! | TAATGATAATTACCTTTCTT+GGG | + | chr7.4:63839800-63839819 | None:intergenic | 20.0% |
| !! | TCATACAAAATCAATTAGAT+CGG | + | chr7.4:63840656-63840675 | None:intergenic | 20.0% |
| !! | TTAATGATAATTACCTTTCT+TGG | + | chr7.4:63839801-63839820 | None:intergenic | 20.0% |
| !! | TTTGTTCAACAATATCATAT+TGG | - | chr7.4:63841005-63841024 | MS.gene87152:intron | 20.0% |
| !!! | AATTTTGATTGGTCTAAAAT+TGG | - | chr7.4:63839819-63839838 | MS.gene87152:intron | 20.0% |
| !!! | ACTTTTAGTATAACTTCAAT+TGG | + | chr7.4:63840621-63840640 | None:intergenic | 20.0% |
| !!! | ATTTTCTCTAGCTAATAAAT+TGG | + | chr7.4:63841567-63841586 | None:intergenic | 20.0% |
| !!! | GATTTCATTAGTTTTGTTAT+TGG | - | chr7.4:63839602-63839621 | MS.gene87152:CDS | 20.0% |
| ! | AAAATTATATCTTGCAGCAA+TGG | - | chr7.4:63841053-63841072 | MS.gene87152:intron | 25.0% |
| ! | AATGATAATTACCTTTCTTG+GGG | + | chr7.4:63839799-63839818 | None:intergenic | 25.0% |
| ! | ATTAGCTAGAGAAAATTTGA+GGG | - | chr7.4:63841571-63841590 | MS.gene87152:CDS | 25.0% |
| ! | ATTGACCAAATCAGAAATTT+AGG | + | chr7.4:63840686-63840705 | None:intergenic | 25.0% |
| ! | TATTAGCTAGAGAAAATTTG+AGG | - | chr7.4:63841570-63841589 | MS.gene87152:CDS | 25.0% |
| ! | TGATTCCTAAATTTCTGATT+TGG | - | chr7.4:63840678-63840697 | MS.gene87152:intron | 25.0% |
| !! | AAGAACACAATTTGAAACTA+CGG | + | chr7.4:63840028-63840047 | None:intergenic | 25.0% |
| !! | TTCTCAAATTATTTTCAGTG+TGG | - | chr7.4:63840134-63840153 | MS.gene87152:CDS | 25.0% |
| !!! | ATAAGCAAGGTTTTAAATTC+CGG | - | chr7.4:63840835-63840854 | MS.gene87152:intron | 25.0% |
| !!! | TGAATTGCTATTTTGTGTTT+AGG | - | chr7.4:63839714-63839733 | MS.gene87152:CDS | 25.0% |
| !!! | TTATTGTAAAATGCTGTTTC+TGG | + | chr7.4:63841206-63841225 | None:intergenic | 25.0% |
| ATGATAATTACCTTTCTTGG+GGG | + | chr7.4:63839798-63839817 | None:intergenic | 30.0% | |
| CATCATCAATAAGTGTAAGA+GGG | - | chr7.4:63841426-63841445 | MS.gene87152:CDS | 30.0% | |
| GTAATTATATGAGTGTGAGT+CGG | + | chr7.4:63839920-63839939 | None:intergenic | 30.0% | |
| GTTAATGAAGGAAGTAAAGT+AGG | - | chr7.4:63840301-63840320 | MS.gene87152:intron | 30.0% | |
| GTTCAATTTCTTGAGGAAAT+AGG | + | chr7.4:63841124-63841143 | None:intergenic | 30.0% | |
| TCATCATCAATAAGTGTAAG+AGG | - | chr7.4:63841425-63841444 | MS.gene87152:CDS | 30.0% | |
| TCATGATTACCTTGATGAAT+TGG | + | chr7.4:63839491-63839510 | None:intergenic | 30.0% | |
| TTCTCTAGCTAATAAATTGG+AGG | + | chr7.4:63841564-63841583 | None:intergenic | 30.0% | |
| ! | AATAATACTGGATGATGATG+AGG | - | chr7.4:63841292-63841311 | MS.gene87152:intron | 30.0% |
| ! | AGAAAAGGAATTGATTCAGA+AGG | - | chr7.4:63840324-63840343 | MS.gene87152:intron | 30.0% |
| ! | CAATTGGTCAATTTAGAACA+TGG | + | chr7.4:63840605-63840624 | None:intergenic | 30.0% |
| ! | GAAAAGGAATTGATTCAGAA+GGG | - | chr7.4:63840325-63840344 | MS.gene87152:intron | 30.0% |
| ! | TGCTGCTTCTCTAATATTTA+AGG | + | chr7.4:63841168-63841187 | None:intergenic | 30.0% |
| !! | CAGCAATTTCCATTTTAATG+GGG | - | chr7.4:63840918-63840937 | MS.gene87152:intron | 30.0% |
| !! | GCAGCAATTTCCATTTTAAT+GGG | - | chr7.4:63840917-63840936 | MS.gene87152:intron | 30.0% |
| !! | TAAAATGCTGTTTCTGGAAT+TGG | + | chr7.4:63841200-63841219 | None:intergenic | 30.0% |
| !! | TACACTTATTGATGATGATG+AGG | + | chr7.4:63841423-63841442 | None:intergenic | 30.0% |
| !!! | GTTTTGTTATTGGGTTGATT+TGG | - | chr7.4:63839612-63839631 | MS.gene87152:CDS | 30.0% |
| ACATCCTTCGATCTCTATTA+CGG | + | chr7.4:63841622-63841641 | None:intergenic | 35.0% | |
| AGGAAGTAAAGTAGGAGAAA+AGG | - | chr7.4:63840309-63840328 | MS.gene87152:intron | 35.0% | |
| AGGTTACAAAGAGAACTTGA+TGG | - | chr7.4:63841332-63841351 | MS.gene87152:intron | 35.0% | |
| ATTTAATACCTGTGACCACA+AGG | + | chr7.4:63840555-63840574 | None:intergenic | 35.0% | |
| CATCATCCAGTATTATTTCC+TGG | + | chr7.4:63841289-63841308 | None:intergenic | 35.0% | |
| CTAAATGCAGACAATTGATC+AGG | - | chr7.4:63840766-63840785 | MS.gene87152:intron | 35.0% | |
| CTGATCAATTGTCTGCATTT+AGG | + | chr7.4:63840768-63840787 | None:intergenic | 35.0% | |
| GAGAAACCAGGAAATAATAC+TGG | - | chr7.4:63841280-63841299 | MS.gene87152:intron | 35.0% | |
| TAGAGAAAATTTGAGGGCTA+TGG | - | chr7.4:63841577-63841596 | MS.gene87152:CDS | 35.0% | |
| TATTATCAGTGTGATCAGTG+TGG | - | chr7.4:63839965-63839984 | MS.gene87152:intron | 35.0% | |
| TCTCTTAGCTTATCCATACA+AGG | + | chr7.4:63840388-63840407 | None:intergenic | 35.0% | |
| TTCCTAGGTTCAATTTCTTG+AGG | + | chr7.4:63841131-63841150 | None:intergenic | 35.0% | |
| TTCCTCAAGAAATTGAACCT+AGG | - | chr7.4:63841126-63841145 | MS.gene87152:CDS | 35.0% | |
| ! | CAGCATTTTACAATAACCGA+AGG | - | chr7.4:63841210-63841229 | MS.gene87152:intron | 35.0% |
| ! | GGCAGCAATTTCCATTTTAA+TGG | - | chr7.4:63840916-63840935 | MS.gene87152:intron | 35.0% |
| ! | GTTGTTGATGAACAGATAGT+GGG | - | chr7.4:63840251-63840270 | MS.gene87152:intron | 35.0% |
| ! | GTTGTTGTTGATGAACAGAT+AGG | - | chr7.4:63840063-63840082 | MS.gene87152:intron | 35.0% |
| ! | TATGAATTCTAGGAGAAACC+AGG | - | chr7.4:63841268-63841287 | MS.gene87152:intron | 35.0% |
| ! | TATTTTCAGTGTGGATGTGT+CGG | - | chr7.4:63840143-63840162 | MS.gene87152:CDS | 35.0% |
| ! | TGTTGTTGATGAACAGATAG+TGG | - | chr7.4:63840065-63840084 | MS.gene87152:intron | 35.0% |
| !! | AGGGGTATCTTCAACAATTA+GGG | + | chr7.4:63839407-63839426 | None:intergenic | 35.0% |
| !! | TATTCGTCGCTGTTTTCTTT+CGG | + | chr7.4:63839297-63839316 | None:intergenic | 35.0% |
| AAGATGCTGCATTTGCTCTA+AGG | - | chr7.4:63841480-63841499 | MS.gene87152:CDS | 40.0% | |
| ATAGAACATCGACAACAACG+AGG | - | chr7.4:63841369-63841388 | MS.gene87152:intron | 40.0% | |
| ATCTCCGTAATAGAGATCGA+AGG | - | chr7.4:63841615-63841634 | MS.gene87152:CDS | 40.0% | |
| ATGAACACGTATCCAACACT+GGG | + | chr7.4:63839895-63839914 | None:intergenic | 40.0% | |
| ATTATATTCGTGTCCGACAC+TGG | + | chr7.4:63840095-63840114 | None:intergenic | 40.0% | |
| ATTCAAATCTGCTGCTGCTA+TGG | - | chr7.4:63839348-63839367 | MS.gene87152:CDS | 40.0% | |
| CAAATGCAGCATCTTCATCT+TGG | + | chr7.4:63841475-63841494 | None:intergenic | 40.0% | |
| CAACTGCAACCCCATTAAAA+TGG | + | chr7.4:63840930-63840949 | None:intergenic | 40.0% | |
| CATCAATAAGTGTAAGAGGG+AGG | - | chr7.4:63841429-63841448 | MS.gene87152:CDS | 40.0% | |
| GAATTCATACCCCTACTTGA+TGG | + | chr7.4:63841257-63841276 | None:intergenic | 40.0% | |
| GATTTCAACGTAACTGCAAC+CGG | + | chr7.4:63840857-63840876 | None:intergenic | 40.0% | |
| GCTGAATGCTTCTATTCCTT+CGG | + | chr7.4:63841229-63841248 | None:intergenic | 40.0% | |
| TACCTTGATGAATTGGAGAG+CGG | + | chr7.4:63839484-63839503 | None:intergenic | 40.0% | |
| TAGAACATCGACAACAACGA+GGG | - | chr7.4:63841370-63841389 | MS.gene87152:intron | 40.0% | |
| TAGAATCTCGATCTCGATCA+GGG | + | chr7.4:63839426-63839445 | None:intergenic | 40.0% | |
| TCAGCCATATCCATCAAGTA+GGG | - | chr7.4:63841244-63841263 | MS.gene87152:intron | 40.0% | |
| TCATCGAGATCCAGAACAAT+CGG | + | chr7.4:63839767-63839786 | None:intergenic | 40.0% | |
| TCGTTGTTGTCGATGTTCTA+TGG | + | chr7.4:63841370-63841389 | None:intergenic | 40.0% | |
| TTAGAATCTCGATCTCGATC+AGG | + | chr7.4:63839427-63839446 | None:intergenic | 40.0% | |
| TTATATTCGTGTCCGACACT+GGG | + | chr7.4:63840094-63840113 | None:intergenic | 40.0% | |
| TTCAGCCATATCCATCAAGT+AGG | - | chr7.4:63841243-63841262 | MS.gene87152:intron | 40.0% | |
| ! | AGCTTTTACTAGTAGAAGCC+AGG | - | chr7.4:63841526-63841545 | MS.gene87152:CDS | 40.0% |
| ! | ATACCCCTACTTGATGGATA+TGG | + | chr7.4:63841251-63841270 | None:intergenic | 40.0% |
| ! | ATTGTTCTGGATCTCGATGA+AGG | - | chr7.4:63839767-63839786 | MS.gene87152:CDS | 40.0% |
| ! | CAAGTAGGGGTATGAATTCT+AGG | - | chr7.4:63841258-63841277 | MS.gene87152:intron | 40.0% |
| ! | CAATTTGAAACTACGGAGCA+CGG | + | chr7.4:63840021-63840040 | None:intergenic | 40.0% |
| ! | GCGCAAGTTTTGCAATACAA+AGG | + | chr7.4:63840879-63840898 | None:intergenic | 40.0% |
| ! | TGATAAGCGAAGCCATGTTT+TGG | + | chr7.4:63839321-63839340 | None:intergenic | 40.0% |
| ! | TGATGATGAGGATGCTGAAT+TGG | - | chr7.4:63841304-63841323 | MS.gene87152:intron | 40.0% |
| !! | CAGGGGTATCTTCAACAATT+AGG | + | chr7.4:63839408-63839427 | None:intergenic | 40.0% |
| ACAGACACAGACTCAAACAC+AGG | + | chr7.4:63840183-63840202 | None:intergenic | 45.0% | |
| AGAATCTCGATCTCGATCAG+GGG | + | chr7.4:63839425-63839444 | None:intergenic | 45.0% | |
| AGATCCAGAACAATCGGTTG+TGG | + | chr7.4:63839761-63839780 | None:intergenic | 45.0% | |
| AGCGACGAATAGCCAAAACA+TGG | - | chr7.4:63839306-63839325 | MS.gene87152:CDS | 45.0% | |
| AGGATGCTGAATTGGCTAGA+AGG | - | chr7.4:63841312-63841331 | MS.gene87152:intron | 45.0% | |
| CAGCCATATCCATCAAGTAG+GGG | - | chr7.4:63841245-63841264 | MS.gene87152:intron | 45.0% | |
| CATGAACACGTATCCAACAC+TGG | + | chr7.4:63839896-63839915 | None:intergenic | 45.0% | |
| GCACAGATACTCTTCGCATT+AGG | - | chr7.4:63839864-63839883 | MS.gene87152:intron | 45.0% | |
| GCAGCAGCAGATTTGAATCT+CGG | + | chr7.4:63839346-63839365 | None:intergenic | 45.0% | |
| GGGTTCATGGTGGTAATTCA+AGG | - | chr7.4:63841390-63841409 | MS.gene87152:intron | 45.0% | |
| TGTAAGAGGGAGGACAAGAA+GGG | - | chr7.4:63841439-63841458 | MS.gene87152:CDS | 45.0% | |
| TGTTTAGGAAACGCAGAGCT+AGG | - | chr7.4:63839729-63839748 | MS.gene87152:CDS | 45.0% | |
| TTCTGCTGCTCTTCCTTGTA+TGG | - | chr7.4:63840372-63840391 | MS.gene87152:intron | 45.0% | |
| ! | CTGTTTTCTTTCGGATCACG+GGG | + | chr7.4:63839288-63839307 | None:intergenic | 45.0% |
| !! | CGCTGTTTTCTTTCGGATCA+CGG | + | chr7.4:63839290-63839309 | None:intergenic | 45.0% |
| !! | GCTGTTTTCTTTCGGATCAC+GGG | + | chr7.4:63839289-63839308 | None:intergenic | 45.0% |
| !! | TGCTCTAAGGTTGCAAAGAG+AGG | - | chr7.4:63841493-63841512 | MS.gene87152:CDS | 45.0% |
| AAATCTGCTGCTGCTATGGC+TGG | - | chr7.4:63839352-63839371 | MS.gene87152:CDS | 50.0% | |
| ACAACAACGAGGGTTCATGG+TGG | - | chr7.4:63841380-63841399 | MS.gene87152:intron | 50.0% | |
| AGATCTGCTGCAGACAAGTG+TGG | - | chr7.4:63840732-63840751 | MS.gene87152:intron | 50.0% | |
| ATACCTGTGACCACAAGGAG+TGG | + | chr7.4:63840550-63840569 | None:intergenic | 50.0% | |
| CAAAACTTGCGCACAAGCGT+GGG | - | chr7.4:63840887-63840906 | MS.gene87152:intron | 50.0% | |
| CTCCGCTCTCCAATTCATCA+AGG | - | chr7.4:63839479-63839498 | MS.gene87152:CDS | 50.0% | |
| GAAGGAGAAACCCCCAAGAA+AGG | - | chr7.4:63839785-63839804 | MS.gene87152:CDS | 50.0% | |
| GCACTGTGAACACAGTTCTG+TGG | - | chr7.4:63841084-63841103 | MS.gene87152:intron | 50.0% | |
| GGCTATGGCAACTAGAGCAA+TGG | - | chr7.4:63841592-63841611 | MS.gene87152:CDS | 50.0% | |
| GTAAGAGGGAGGACAAGAAG+GGG | - | chr7.4:63841440-63841459 | MS.gene87152:CDS | 50.0% | |
| GTGCTAGCAGCAACTTTCCT+AGG | + | chr7.4:63841146-63841165 | None:intergenic | 50.0% | |
| GTGTAAGAGGGAGGACAAGA+AGG | - | chr7.4:63841438-63841457 | MS.gene87152:CDS | 50.0% | |
| TAAGAGGGAGGACAAGAAGG+GGG | - | chr7.4:63841441-63841460 | MS.gene87152:CDS | 50.0% | |
| TCCACCACAACCGATTGTTC+TGG | - | chr7.4:63839754-63839773 | MS.gene87152:CDS | 50.0% | |
| TCCAGAACAATCGGTTGTGG+TGG | + | chr7.4:63839758-63839777 | None:intergenic | 50.0% | |
| TCGACAACAACGAGGGTTCA+TGG | - | chr7.4:63841377-63841396 | MS.gene87152:intron | 50.0% | |
| TGACCACAAGGAGTGGTACT+TGG | + | chr7.4:63840543-63840562 | None:intergenic | 50.0% | |
| AAACTACGGAGCACGGACAC+AGG | + | chr7.4:63840014-63840033 | None:intergenic | 55.0% | |
| AAGAGGGAGGACAAGAAGGG+GGG | - | chr7.4:63841442-63841461 | MS.gene87152:CDS | 55.0% | |
| AGATAGGCGTGTCCCAGTGT+CGG | - | chr7.4:63840079-63840098 | MS.gene87152:intron | 55.0% | |
| AGGACAAGAAGGGGGGTTTC+AGG | - | chr7.4:63841449-63841468 | MS.gene87152:CDS | 55.0% | |
| CATTAGGCGTGTCCCAGTGT+TGG | - | chr7.4:63839880-63839899 | MS.gene87152:intron | 55.0% | |
| GAGCCAAGTACCACTCCTTG+TGG | - | chr7.4:63840537-63840556 | MS.gene87152:CDS | 55.0% | |
| GCAAAACTTGCGCACAAGCG+TGG | - | chr7.4:63840886-63840905 | MS.gene87152:intron | 55.0% | |
| GTACCACTCCTTGTGGTCAC+AGG | - | chr7.4:63840544-63840563 | MS.gene87152:CDS | 55.0% | |
| TGGAGGAAGATGACTGTGCC+TGG | + | chr7.4:63841547-63841566 | None:intergenic | 55.0% | |
| ! | TGCTGCTGCTATGGCTGGTT+GGG | - | chr7.4:63839357-63839376 | MS.gene87152:CDS | 55.0% |
| CTGCTGCTGCTATGGCTGGT+TGG | - | chr7.4:63839356-63839375 | MS.gene87152:CDS | 60.0% | |
| GCGCACAAGCGTGGGCGATG+TGG | - | chr7.4:63840895-63840914 | MS.gene87152:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 63839256 | 63841643 | 63839256 | ID=MS.gene87152 |
| chr7.4 | mRNA | 63839256 | 63841643 | 63839256 | ID=MS.gene87152.t1;Parent=MS.gene87152 |
| chr7.4 | exon | 63841399 | 63841643 | 63841399 | ID=MS.gene87152.t1.exon1;Parent=MS.gene87152.t1 |
| chr7.4 | CDS | 63841399 | 63841643 | 63841399 | ID=cds.MS.gene87152.t1;Parent=MS.gene87152.t1 |
| chr7.4 | exon | 63841093 | 63841163 | 63841093 | ID=MS.gene87152.t1.exon2;Parent=MS.gene87152.t1 |
| chr7.4 | CDS | 63841093 | 63841163 | 63841093 | ID=cds.MS.gene87152.t1;Parent=MS.gene87152.t1 |
| chr7.4 | exon | 63840476 | 63840633 | 63840476 | ID=MS.gene87152.t1.exon3;Parent=MS.gene87152.t1 |
| chr7.4 | CDS | 63840476 | 63840633 | 63840476 | ID=cds.MS.gene87152.t1;Parent=MS.gene87152.t1 |
| chr7.4 | exon | 63840334 | 63840383 | 63840334 | ID=MS.gene87152.t1.exon4;Parent=MS.gene87152.t1 |
| chr7.4 | CDS | 63840334 | 63840383 | 63840334 | ID=cds.MS.gene87152.t1;Parent=MS.gene87152.t1 |
| chr7.4 | exon | 63840112 | 63840186 | 63840112 | ID=MS.gene87152.t1.exon5;Parent=MS.gene87152.t1 |
| chr7.4 | CDS | 63840112 | 63840186 | 63840112 | ID=cds.MS.gene87152.t1;Parent=MS.gene87152.t1 |
| chr7.4 | exon | 63839256 | 63839829 | 63839256 | ID=MS.gene87152.t1.exon6;Parent=MS.gene87152.t1 |
| chr7.4 | CDS | 63839256 | 63839829 | 63839256 | ID=cds.MS.gene87152.t1;Parent=MS.gene87152.t1 |
| Gene Sequence |
| Protein sequence |
