Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87400.t1 | XP_003629499.1 | 99 | 313 | 3 | 0 | 1 | 313 | 1 | 313 | 9.20E-174 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87400.t1 | Q9SYY4 | 62.6 | 270 | 96 | 3 | 13 | 279 | 6 | 273 | 6.8e-93 | 342.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87400.t1 | G7LFI8 | 99.0 | 313 | 3 | 0 | 1 | 313 | 1 | 313 | 6.6e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049257 | MS.gene87400 | 0.818913 | 1.53E-52 | -1.69E-46 |
| MS.gene050133 | MS.gene87400 | -0.811408 | 7.11E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene87400 | 0.803152 | 3.99E-49 | -1.69E-46 |
| MS.gene050553 | MS.gene87400 | 0.838234 | 3.25E-57 | -1.69E-46 |
| MS.gene05081 | MS.gene87400 | 0.819181 | 1.33E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene87400 | 0.820475 | 6.72E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene87400 | 0.822728 | 2.03E-53 | -1.69E-46 |
| MS.gene050874 | MS.gene87400 | -0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene87400 | -0.834972 | 2.20E-56 | -1.69E-46 |
| MS.gene051552 | MS.gene87400 | -0.815176 | 1.06E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene87400 | 0.811914 | 5.52E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene87400 | 0.807174 | 5.75E-50 | -1.69E-46 |
| MS.gene052100 | MS.gene87400 | 0.846673 | 1.87E-59 | -1.69E-46 |
| MS.gene053889 | MS.gene87400 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene87400 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene87400 | -0.835843 | 1.33E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene87400 | 0.800374 | 1.49E-48 | -1.69E-46 |
| MS.gene056166 | MS.gene87400 | 0.807745 | 4.35E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene87400 | 0.82861 | 8.17E-55 | -1.69E-46 |
| MS.gene056508 | MS.gene87400 | 0.817788 | 2.75E-52 | -1.69E-46 |
| MS.gene058418 | MS.gene87400 | -0.837825 | 4.14E-57 | -1.69E-46 |
| MS.gene05960 | MS.gene87400 | -0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene87400 | 0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene87400 | 0.837847 | 4.08E-57 | -1.69E-46 |
| MS.gene06080 | MS.gene87400 | -0.813415 | 2.59E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87400.t1 | MTR_8g078200 | 99.042 | 313 | 3 | 0 | 1 | 313 | 1 | 313 | 0.0 | 622 |
| MS.gene87400.t1 | MTR_5g019330 | 62.667 | 300 | 99 | 4 | 13 | 312 | 8 | 294 | 4.32e-127 | 365 |
| MS.gene87400.t1 | MTR_3g111610 | 55.862 | 290 | 123 | 4 | 12 | 300 | 11 | 296 | 1.06e-106 | 313 |
| MS.gene87400.t1 | MTR_1g021915 | 61.500 | 200 | 75 | 2 | 15 | 213 | 8 | 206 | 5.59e-76 | 233 |
| MS.gene87400.t1 | MTR_7g113780 | 33.929 | 280 | 169 | 4 | 16 | 293 | 9 | 274 | 8.87e-39 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87400.t1 | AT4G36830 | 60.351 | 285 | 105 | 4 | 13 | 294 | 6 | 285 | 1.32e-118 | 343 |
| MS.gene87400.t1 | AT1G75000 | 58.801 | 267 | 105 | 3 | 15 | 277 | 3 | 268 | 9.54e-112 | 325 |
| MS.gene87400.t1 | AT4G36830 | 63.137 | 255 | 89 | 3 | 13 | 264 | 6 | 258 | 4.20e-111 | 325 |
| MS.gene87400.t1 | AT3G06470 | 32.394 | 284 | 175 | 7 | 15 | 293 | 7 | 278 | 2.29e-35 | 129 |
| MS.gene87400.t1 | AT3G06460 | 31.461 | 267 | 171 | 4 | 15 | 279 | 7 | 263 | 2.46e-32 | 122 |
Find 99 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATGGTTATAGATTT+TGG | 0.113077 | 8.3:-25977231 | MS.gene87400:CDS |
| CTTGTTTACTCTCTTGTTTA+TGG | 0.219721 | 8.3:-25977244 | MS.gene87400:CDS |
| CTTCTGGTCGTGTCTTCTTT+TGG | 0.271814 | 8.3:-25977444 | MS.gene87400:CDS |
| GAGCCATCGAAGTGGGGTTT+TGG | 0.273493 | 8.3:+25977492 | None:intergenic |
| GAGGCTGTGGAGGGCGGGGA+TGG | 0.298938 | 8.3:+25977606 | None:intergenic |
| GAGGATGAGGTAGGTGGCTA+TGG | 0.328890 | 8.3:+25977693 | None:intergenic |
| AGGCTGTGGAGGGCGGGGAT+GGG | 0.344199 | 8.3:+25977607 | None:intergenic |
| GTTGTAATGGAATGGGTGCT+TGG | 0.350615 | 8.3:-25977084 | MS.gene87400:CDS |
| CCCTTAGGTACACGACCTTC+TGG | 0.360013 | 8.3:-25977460 | MS.gene87400:CDS |
| AACTGTCAGATTCTGTTGTT+GGG | 0.385095 | 8.3:-25977166 | MS.gene87400:CDS |
| TGGCTCCTTTGTTTCCCCTT+AGG | 0.386786 | 8.3:-25977475 | MS.gene87400:CDS |
| TTGTAATGGAATGGGTGCTT+GGG | 0.388320 | 8.3:-25977083 | MS.gene87400:CDS |
| CTTGACCCGGCGATTAGGTC+GGG | 0.400972 | 8.3:+25976929 | None:intergenic |
| GAACTGTCAGATTCTGTTGT+TGG | 0.405377 | 8.3:-25977167 | MS.gene87400:CDS |
| GTTCTGAGAGGTAGTAGATA+AGG | 0.408246 | 8.3:+25977788 | None:intergenic |
| ATGGTGAGGCTGTGGAGGGC+GGG | 0.410769 | 8.3:+25977601 | None:intergenic |
| GTCCCCTTGACCCGGCGATT+AGG | 0.410976 | 8.3:+25976924 | None:intergenic |
| TCCGTGACACACAATGGTTC+TGG | 0.412013 | 8.3:-25977522 | MS.gene87400:CDS |
| GGAGAGAGAGTGAGAGGTGG+AGG | 0.415211 | 8.3:+25977662 | None:intergenic |
| GTTGGAGCCACAGTCATTCA+TGG | 0.420558 | 8.3:-25977744 | MS.gene87400:CDS |
| TGGTGAGGCTGTGGAGGGCG+GGG | 0.446984 | 8.3:+25977602 | None:intergenic |
| TTTGAAGTTGGTGGTTGTAA+TGG | 0.449023 | 8.3:-25977097 | MS.gene87400:CDS |
| GGAGGAAGAGAGAGAGGATG+AGG | 0.452742 | 8.3:+25977680 | None:intergenic |
| AGGGCGGGGATGGGTCCTAG+AGG | 0.455650 | 8.3:+25977616 | None:intergenic |
| TTCTGAGAGGTAGTAGATAA+GGG | 0.461158 | 8.3:+25977789 | None:intergenic |
| ATCTGACAGTTCAAAACAAA+CGG | 0.465978 | 8.3:+25977178 | None:intergenic |
| TGTGACGGCGGTTGGGAAAG+AGG | 0.468948 | 8.3:+25977641 | None:intergenic |
| TCTTGCCCCGACCTAATCGC+CGG | 0.472510 | 8.3:-25976935 | MS.gene87400:CDS |
| AGAGGGATGTGACGGCGGTT+GGG | 0.473360 | 8.3:+25977634 | None:intergenic |
| TTGGAGCCACAGTCATTCAT+GGG | 0.474230 | 8.3:-25977743 | MS.gene87400:CDS |
| TAGAGGGATGTGACGGCGGT+TGG | 0.477290 | 8.3:+25977633 | None:intergenic |
| CCTTGACCCGGCGATTAGGT+CGG | 0.485730 | 8.3:+25976928 | None:intergenic |
| AGAGGTGGAGGAAGAGAGAG+AGG | 0.488408 | 8.3:+25977674 | None:intergenic |
| AGGGTTCCGATGGTTGTTAA+CGG | 0.491352 | 8.3:+25977808 | None:intergenic |
| ACCAGAAGGTCGTGTACCTA+AGG | 0.492368 | 8.3:+25977459 | None:intergenic |
| CAACGGAATGAGATGATTGA+TGG | 0.494065 | 8.3:+25977763 | None:intergenic |
| TGGGAAGAGTGAAAGGAGAA+TGG | 0.499594 | 8.3:-25976990 | MS.gene87400:CDS |
| GGTTCAAGAGAGTGAATCAA+TGG | 0.499613 | 8.3:-25976969 | MS.gene87400:CDS |
| CATGGTGAGGCTGTGGAGGG+CGG | 0.504783 | 8.3:+25977600 | None:intergenic |
| CCGACCTAATCGCCGGGTCA+AGG | 0.504930 | 8.3:-25976928 | MS.gene87400:CDS |
| CGACCTAATCGCCGGGTCAA+GGG | 0.508643 | 8.3:-25976927 | MS.gene87400:CDS |
| GGCGATTAGGTCGGGGCAAG+AGG | 0.511860 | 8.3:+25976937 | None:intergenic |
| AAGAACAGCAGTGTTGAGAA+TGG | 0.512696 | 8.3:+25977051 | None:intergenic |
| GAAGAGAGAGAGGATGAGGT+AGG | 0.518355 | 8.3:+25977684 | None:intergenic |
| AAACCAACGTTGAAACTGAA+TGG | 0.524502 | 8.3:+25977326 | None:intergenic |
| AGTTGGTGGTTGTAATGGAA+TGG | 0.527844 | 8.3:-25977092 | MS.gene87400:CDS |
| GATGAGGTAGGTGGCTATGG+AGG | 0.529936 | 8.3:+25977696 | None:intergenic |
| TGTGTCACGGATTTCTGATA+CGG | 0.532853 | 8.3:+25977534 | None:intergenic |
| CTTGCCCCGACCTAATCGCC+GGG | 0.536152 | 8.3:-25976934 | MS.gene87400:CDS |
| GAAAGAGGAGAGAGAGTGAG+AGG | 0.541458 | 8.3:+25977656 | None:intergenic |
| AACAAAGGAGCCATCGAAGT+GGG | 0.546861 | 8.3:+25977485 | None:intergenic |
| CATCAATCATCTCATTCCGT+TGG | 0.548440 | 8.3:-25977762 | MS.gene87400:CDS |
| TAACTATTCTACATCGTCGT+AGG | 0.549547 | 8.3:-25977372 | MS.gene87400:CDS |
| GAGAGAGAGGATGAGGTAGG+TGG | 0.552664 | 8.3:+25977687 | None:intergenic |
| AGAGGAGAGAGAGTGAGAGG+TGG | 0.553228 | 8.3:+25977659 | None:intergenic |
| ATGAATGACTGTGGCTCCAA+CGG | 0.554793 | 8.3:+25977746 | None:intergenic |
| TTGACCCGGCGATTAGGTCG+GGG | 0.555642 | 8.3:+25976930 | None:intergenic |
| GGGCGGGGATGGGTCCTAGA+GGG | 0.556122 | 8.3:+25977617 | None:intergenic |
| TCGTGACCGTCCCCTTGACC+CGG | 0.558377 | 8.3:+25976916 | None:intergenic |
| GTTGGTGGTTGTAATGGAAT+GGG | 0.561971 | 8.3:-25977091 | MS.gene87400:CDS |
| TGAGAGACATGGTGAGGCTG+TGG | 0.562000 | 8.3:+25977593 | None:intergenic |
| ATCTCCGCCACAATCTTCAC+CGG | 0.563488 | 8.3:-25977571 | MS.gene87400:CDS |
| TGGGTCCTAGAGGGATGTGA+CGG | 0.574620 | 8.3:+25977626 | None:intergenic |
| GTCATTCATGGGGTTCAACA+TGG | 0.574769 | 8.3:-25977732 | MS.gene87400:CDS |
| CCAGAAGGTCGTGTACCTAA+GGG | 0.582318 | 8.3:+25977460 | None:intergenic |
| TAATCGCCGGGTCAAGGGGA+CGG | 0.583940 | 8.3:-25976922 | MS.gene87400:CDS |
| GCCAGAACCATTGTGTGTCA+CGG | 0.584140 | 8.3:+25977521 | None:intergenic |
| TGTAACGTGGCGTGTCATGT+TGG | 0.586501 | 8.3:-25977142 | MS.gene87400:CDS |
| GACCTAATCGCCGGGTCAAG+GGG | 0.592442 | 8.3:-25976926 | MS.gene87400:CDS |
| AGGTGGCTATGGAGGTGATG+AGG | 0.593761 | 8.3:+25977704 | None:intergenic |
| CAAAAGAAGACACGACCAGA+AGG | 0.593853 | 8.3:+25977445 | None:intergenic |
| CAGAAATCCGTGACACACAA+TGG | 0.594801 | 8.3:-25977528 | MS.gene87400:CDS |
| AGACATGGTGAGGCTGTGGA+GGG | 0.595928 | 8.3:+25977597 | None:intergenic |
| TAGTGTACCGGTGAAGATTG+TGG | 0.598160 | 8.3:+25977564 | None:intergenic |
| TCACCACCGTTAACAACCAT+CGG | 0.600715 | 8.3:-25977814 | MS.gene87400:CDS |
| GTCACGGATTTCTGATACGG+CGG | 0.603191 | 8.3:+25977537 | None:intergenic |
| GTAGTAGATAAGGGTTCCGA+TGG | 0.603257 | 8.3:+25977798 | None:intergenic |
| GTTCCAAAACCCCACTTCGA+TGG | 0.603311 | 8.3:-25977495 | MS.gene87400:CDS |
| GTTGTTAACGGTGGTGATGA+CGG | 0.604640 | 8.3:+25977820 | None:intergenic |
| TACGGCGGAGATTAGTGTAC+CGG | 0.612304 | 8.3:+25977552 | None:intergenic |
| AACCGCCGTCACATCCCTCT+AGG | 0.618343 | 8.3:-25977631 | MS.gene87400:CDS |
| GAGACATGGTGAGGCTGTGG+AGG | 0.636114 | 8.3:+25977596 | None:intergenic |
| TGATGACGGTGGTTTAGCCA+TGG | 0.641896 | 8.3:+25977834 | None:intergenic |
| AACGGAATGAGATGATTGAT+GGG | 0.648054 | 8.3:+25977764 | None:intergenic |
| TCTGTTGTTGGGTTGTAACG+TGG | 0.655015 | 8.3:-25977155 | MS.gene87400:CDS |
| AAACAAAGGAGCCATCGAAG+TGG | 0.658352 | 8.3:+25977484 | None:intergenic |
| TGATTGATGGGTGTTCTGAG+AGG | 0.661816 | 8.3:+25977776 | None:intergenic |
| CAGAAGGTCGTGTACCTAAG+GGG | 0.661964 | 8.3:+25977461 | None:intergenic |
| GAACCATTCAGTTTCAACGT+TGG | 0.662297 | 8.3:-25977329 | MS.gene87400:CDS |
| GTTCCGATGGTTGTTAACGG+TGG | 0.665456 | 8.3:+25977811 | None:intergenic |
| TGGAGCCACAGTCATTCATG+GGG | 0.667835 | 8.3:-25977742 | MS.gene87400:CDS |
| ACAAAGGAGCCATCGAAGTG+GGG | 0.669067 | 8.3:+25977486 | None:intergenic |
| GTCCTAGAGGGATGTGACGG+CGG | 0.675692 | 8.3:+25977629 | None:intergenic |
| GTGTACCTAAGGGGAAACAA+AGG | 0.693808 | 8.3:+25977470 | None:intergenic |
| CGGAGATGAGAGACATGGTG+AGG | 0.705291 | 8.3:+25977587 | None:intergenic |
| GTTAACGGTGGTGATGACGG+TGG | 0.714126 | 8.3:+25977823 | None:intergenic |
| TTGAACCCCATGAATGACTG+TGG | 0.737119 | 8.3:+25977737 | None:intergenic |
| TGTACCGGTGAAGATTGTGG+CGG | 0.746298 | 8.3:+25977567 | None:intergenic |
| TGTGGCGGAGATGAGAGACA+TGG | 0.780597 | 8.3:+25977582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTCATTTTTATGTG+AGG | - | chr8.3:25977721-25977740 | MS.gene87400:CDS | 15.0% |
| !!! | TTGTTTATGGTTATAGATTT+TGG | - | chr8.3:25977514-25977533 | MS.gene87400:CDS | 20.0% |
| !!! | CTTCATTTCTTTTTTGAAGT+TGG | - | chr8.3:25977636-25977655 | MS.gene87400:CDS | 25.0% |
| ATCTGACAGTTCAAAACAAA+CGG | + | chr8.3:25977570-25977589 | None:intergenic | 30.0% | |
| ! | ATGTGAGGATGTATTTTGTT+GGG | - | chr8.3:25977736-25977755 | MS.gene87400:CDS | 30.0% |
| ! | CTTGTTTACTCTCTTGTTTA+TGG | - | chr8.3:25977501-25977520 | MS.gene87400:CDS | 30.0% |
| ! | TATAGATTTTGGACAGCTAT+TGG | - | chr8.3:25977525-25977544 | MS.gene87400:CDS | 30.0% |
| ! | TATGTGAGGATGTATTTTGT+TGG | - | chr8.3:25977735-25977754 | MS.gene87400:CDS | 30.0% |
| !!! | CATTTCTTTTTTGAAGTTGG+TGG | - | chr8.3:25977639-25977658 | MS.gene87400:CDS | 30.0% |
| AAACCAACGTTGAAACTGAA+TGG | + | chr8.3:25977422-25977441 | None:intergenic | 35.0% | |
| AACGGAATGAGATGATTGAT+GGG | + | chr8.3:25976984-25977003 | None:intergenic | 35.0% | |
| AACTGTCAGATTCTGTTGTT+GGG | - | chr8.3:25977579-25977598 | MS.gene87400:CDS | 35.0% | |
| TAACTATTCTACATCGTCGT+AGG | - | chr8.3:25977373-25977392 | MS.gene87400:CDS | 35.0% | |
| ! | ATTTTGTTGGGAAGAGTGAA+AGG | - | chr8.3:25977748-25977767 | MS.gene87400:CDS | 35.0% |
| ! | TTCTGAGAGGTAGTAGATAA+GGG | + | chr8.3:25976959-25976978 | None:intergenic | 35.0% |
| !! | TTTGAAGTTGGTGGTTGTAA+TGG | - | chr8.3:25977648-25977667 | MS.gene87400:CDS | 35.0% |
| !!! | CAACGTTGGTTTCTTTTCTA+TGG | - | chr8.3:25977430-25977449 | MS.gene87400:CDS | 35.0% |
| CAACGGAATGAGATGATTGA+TGG | + | chr8.3:25976985-25977004 | None:intergenic | 40.0% | |
| CATCAATCATCTCATTCCGT+TGG | - | chr8.3:25976983-25977002 | MS.gene87400:CDS | 40.0% | |
| GAACCATTCAGTTTCAACGT+TGG | - | chr8.3:25977416-25977435 | MS.gene87400:CDS | 40.0% | |
| GAACTGTCAGATTCTGTTGT+TGG | - | chr8.3:25977578-25977597 | MS.gene87400:CDS | 40.0% | |
| GGTTCAAGAGAGTGAATCAA+TGG | - | chr8.3:25977776-25977795 | MS.gene87400:CDS | 40.0% | |
| TGTGTCACGGATTTCTGATA+CGG | + | chr8.3:25977214-25977233 | None:intergenic | 40.0% | |
| ! | AAGAACAGCAGTGTTGAGAA+TGG | + | chr8.3:25977697-25977716 | None:intergenic | 40.0% |
| ! | TTGTAATGGAATGGGTGCTT+GGG | - | chr8.3:25977662-25977681 | MS.gene87400:CDS | 40.0% |
| !! | AGTTGGTGGTTGTAATGGAA+TGG | - | chr8.3:25977653-25977672 | MS.gene87400:CDS | 40.0% |
| !! | GTTCTGAGAGGTAGTAGATA+AGG | + | chr8.3:25976960-25976979 | None:intergenic | 40.0% |
| !! | GTTGGTGGTTGTAATGGAAT+GGG | - | chr8.3:25977654-25977673 | MS.gene87400:CDS | 40.0% |
| AAACAAAGGAGCCATCGAAG+TGG | + | chr8.3:25977264-25977283 | None:intergenic | 45.0% | |
| AACAAAGGAGCCATCGAAGT+GGG | + | chr8.3:25977263-25977282 | None:intergenic | 45.0% | |
| AGGGTTCCGATGGTTGTTAA+CGG | + | chr8.3:25976940-25976959 | None:intergenic | 45.0% | |
| ATGAATGACTGTGGCTCCAA+CGG | + | chr8.3:25977002-25977021 | None:intergenic | 45.0% | |
| CAAAAGAAGACACGACCAGA+AGG | + | chr8.3:25977303-25977322 | None:intergenic | 45.0% | |
| CAGAAATCCGTGACACACAA+TGG | - | chr8.3:25977217-25977236 | MS.gene87400:CDS | 45.0% | |
| GTAGTAGATAAGGGTTCCGA+TGG | + | chr8.3:25976950-25976969 | None:intergenic | 45.0% | |
| GTCATTCATGGGGTTCAACA+TGG | - | chr8.3:25977013-25977032 | MS.gene87400:CDS | 45.0% | |
| GTGTACCTAAGGGGAAACAA+AGG | + | chr8.3:25977278-25977297 | None:intergenic | 45.0% | |
| TCACCACCGTTAACAACCAT+CGG | - | chr8.3:25976931-25976950 | MS.gene87400:CDS | 45.0% | |
| TGGGAAGAGTGAAAGGAGAA+TGG | - | chr8.3:25977755-25977774 | MS.gene87400:CDS | 45.0% | |
| TTGAACCCCATGAATGACTG+TGG | + | chr8.3:25977011-25977030 | None:intergenic | 45.0% | |
| TTGGAGCCACAGTCATTCAT+GGG | - | chr8.3:25977002-25977021 | MS.gene87400:CDS | 45.0% | |
| ! | CTTCTGGTCGTGTCTTCTTT+TGG | - | chr8.3:25977301-25977320 | MS.gene87400:CDS | 45.0% |
| ! | GTTGTAATGGAATGGGTGCT+TGG | - | chr8.3:25977661-25977680 | MS.gene87400:CDS | 45.0% |
| ! | GTTGTTAACGGTGGTGATGA+CGG | + | chr8.3:25976928-25976947 | None:intergenic | 45.0% |
| ! | TAGTGTACCGGTGAAGATTG+TGG | + | chr8.3:25977184-25977203 | None:intergenic | 45.0% |
| ! | TCTGTTGTTGGGTTGTAACG+TGG | - | chr8.3:25977590-25977609 | MS.gene87400:CDS | 45.0% |
| ! | TGATTGATGGGTGTTCTGAG+AGG | + | chr8.3:25976972-25976991 | None:intergenic | 45.0% |
| ACAAAGGAGCCATCGAAGTG+GGG | + | chr8.3:25977262-25977281 | None:intergenic | 50.0% | |
| ACCAGAAGGTCGTGTACCTA+AGG | + | chr8.3:25977289-25977308 | None:intergenic | 50.0% | |
| ATCTCCGCCACAATCTTCAC+CGG | - | chr8.3:25977174-25977193 | MS.gene87400:CDS | 50.0% | |
| CAGAAGGTCGTGTACCTAAG+GGG | + | chr8.3:25977287-25977306 | None:intergenic | 50.0% | |
| CCAGAAGGTCGTGTACCTAA+GGG | + | chr8.3:25977288-25977307 | None:intergenic | 50.0% | |
| GAAAGAGGAGAGAGAGTGAG+AGG | + | chr8.3:25977092-25977111 | None:intergenic | 50.0% | |
| GAAGAGAGAGAGGATGAGGT+AGG | + | chr8.3:25977064-25977083 | None:intergenic | 50.0% | |
| GCCAGAACCATTGTGTGTCA+CGG | + | chr8.3:25977227-25977246 | None:intergenic | 50.0% | |
| GTCACGGATTTCTGATACGG+CGG | + | chr8.3:25977211-25977230 | None:intergenic | 50.0% | |
| GTTCCAAAACCCCACTTCGA+TGG | - | chr8.3:25977250-25977269 | MS.gene87400:CDS | 50.0% | |
| GTTCCGATGGTTGTTAACGG+TGG | + | chr8.3:25976937-25976956 | None:intergenic | 50.0% | |
| GTTGGAGCCACAGTCATTCA+TGG | - | chr8.3:25977001-25977020 | MS.gene87400:CDS | 50.0% | |
| TACGGCGGAGATTAGTGTAC+CGG | + | chr8.3:25977196-25977215 | None:intergenic | 50.0% | |
| TCCGTGACACACAATGGTTC+TGG | - | chr8.3:25977223-25977242 | MS.gene87400:CDS | 50.0% | |
| TGGAGCCACAGTCATTCATG+GGG | - | chr8.3:25977003-25977022 | MS.gene87400:CDS | 50.0% | |
| TGTAACGTGGCGTGTCATGT+TGG | - | chr8.3:25977603-25977622 | MS.gene87400:CDS | 50.0% | |
| ! | TGGCTCCTTTGTTTCCCCTT+AGG | - | chr8.3:25977270-25977289 | MS.gene87400:CDS | 50.0% |
| ! | TGTACCGGTGAAGATTGTGG+CGG | + | chr8.3:25977181-25977200 | None:intergenic | 50.0% |
| AGACATGGTGAGGCTGTGGA+GGG | + | chr8.3:25977151-25977170 | None:intergenic | 55.0% | |
| AGAGGAGAGAGAGTGAGAGG+TGG | + | chr8.3:25977089-25977108 | None:intergenic | 55.0% | |
| AGAGGTGGAGGAAGAGAGAG+AGG | + | chr8.3:25977074-25977093 | None:intergenic | 55.0% | |
| AGGTGGCTATGGAGGTGATG+AGG | + | chr8.3:25977044-25977063 | None:intergenic | 55.0% | |
| CCCTTAGGTACACGACCTTC+TGG | - | chr8.3:25977285-25977304 | MS.gene87400:CDS | 55.0% | |
| CGGAGATGAGAGACATGGTG+AGG | + | chr8.3:25977161-25977180 | None:intergenic | 55.0% | |
| GAGAGAGAGGATGAGGTAGG+TGG | + | chr8.3:25977061-25977080 | None:intergenic | 55.0% | |
| GAGGATGAGGTAGGTGGCTA+TGG | + | chr8.3:25977055-25977074 | None:intergenic | 55.0% | |
| GATGAGGTAGGTGGCTATGG+AGG | + | chr8.3:25977052-25977071 | None:intergenic | 55.0% | |
| GGAGGAAGAGAGAGAGGATG+AGG | + | chr8.3:25977068-25977087 | None:intergenic | 55.0% | |
| TGAGAGACATGGTGAGGCTG+TGG | + | chr8.3:25977155-25977174 | None:intergenic | 55.0% | |
| TGGGTCCTAGAGGGATGTGA+CGG | + | chr8.3:25977122-25977141 | None:intergenic | 55.0% | |
| ! | GAGCCATCGAAGTGGGGTTT+TGG | + | chr8.3:25977256-25977275 | None:intergenic | 55.0% |
| ! | TGTGGCGGAGATGAGAGACA+TGG | + | chr8.3:25977166-25977185 | None:intergenic | 55.0% |
| !! | GTTAACGGTGGTGATGACGG+TGG | + | chr8.3:25976925-25976944 | None:intergenic | 55.0% |
| AACCGCCGTCACATCCCTCT+AGG | - | chr8.3:25977114-25977133 | MS.gene87400:CDS | 60.0% | |
| AGAGGGATGTGACGGCGGTT+GGG | + | chr8.3:25977114-25977133 | None:intergenic | 60.0% | |
| CCTTGACCCGGCGATTAGGT+CGG | + | chr8.3:25977820-25977839 | None:intergenic | 60.0% | |
| CGACCTAATCGCCGGGTCAA+GGG | - | chr8.3:25977818-25977837 | MS.gene87400:CDS | 60.0% | |
| CTTGACCCGGCGATTAGGTC+GGG | + | chr8.3:25977819-25977838 | None:intergenic | 60.0% | |
| GACCTAATCGCCGGGTCAAG+GGG | - | chr8.3:25977819-25977838 | MS.gene87400:CDS | 60.0% | |
| GAGACATGGTGAGGCTGTGG+AGG | + | chr8.3:25977152-25977171 | None:intergenic | 60.0% | |
| GGAGAGAGAGTGAGAGGTGG+AGG | + | chr8.3:25977086-25977105 | None:intergenic | 60.0% | |
| GTCCTAGAGGGATGTGACGG+CGG | + | chr8.3:25977119-25977138 | None:intergenic | 60.0% | |
| TAATCGCCGGGTCAAGGGGA+CGG | - | chr8.3:25977823-25977842 | MS.gene87400:CDS | 60.0% | |
| TAGAGGGATGTGACGGCGGT+TGG | + | chr8.3:25977115-25977134 | None:intergenic | 60.0% | |
| TCTTGCCCCGACCTAATCGC+CGG | - | chr8.3:25977810-25977829 | MS.gene87400:CDS | 60.0% | |
| TGTGACGGCGGTTGGGAAAG+AGG | + | chr8.3:25977107-25977126 | None:intergenic | 60.0% | |
| TTGACCCGGCGATTAGGTCG+GGG | + | chr8.3:25977818-25977837 | None:intergenic | 60.0% | |
| ATGGTGAGGCTGTGGAGGGC+GGG | + | chr8.3:25977147-25977166 | None:intergenic | 65.0% | |
| CATGGTGAGGCTGTGGAGGG+CGG | + | chr8.3:25977148-25977167 | None:intergenic | 65.0% | |
| CCGACCTAATCGCCGGGTCA+AGG | - | chr8.3:25977817-25977836 | MS.gene87400:CDS | 65.0% | |
| CTTGCCCCGACCTAATCGCC+GGG | - | chr8.3:25977811-25977830 | MS.gene87400:CDS | 65.0% | |
| GGCGATTAGGTCGGGGCAAG+AGG | + | chr8.3:25977811-25977830 | None:intergenic | 65.0% | |
| GTCCCCTTGACCCGGCGATT+AGG | + | chr8.3:25977824-25977843 | None:intergenic | 65.0% | |
| TCGTGACCGTCCCCTTGACC+CGG | + | chr8.3:25977832-25977851 | None:intergenic | 65.0% | |
| AGGCTGTGGAGGGCGGGGAT+GGG | + | chr8.3:25977141-25977160 | None:intergenic | 70.0% | |
| AGGGCGGGGATGGGTCCTAG+AGG | + | chr8.3:25977132-25977151 | None:intergenic | 70.0% | |
| GGGCGGGGATGGGTCCTAGA+GGG | + | chr8.3:25977131-25977150 | None:intergenic | 70.0% | |
| TGGTGAGGCTGTGGAGGGCG+GGG | + | chr8.3:25977146-25977165 | None:intergenic | 70.0% | |
| GAGGCTGTGGAGGGCGGGGA+TGG | + | chr8.3:25977142-25977161 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 25976913 | 25977854 | 25976913 | ID=MS.gene87400 |
| chr8.3 | mRNA | 25976913 | 25977854 | 25976913 | ID=MS.gene87400.t1;Parent=MS.gene87400 |
| chr8.3 | exon | 25976913 | 25977854 | 25976913 | ID=MS.gene87400.t1.exon1;Parent=MS.gene87400.t1 |
| chr8.3 | CDS | 25976913 | 25977854 | 25976913 | ID=cds.MS.gene87400.t1;Parent=MS.gene87400.t1 |
| Gene Sequence |
| Protein sequence |
