AlfalfaGEDB | MS.gene88037

M. sativa cultivar XinJiangDaYe / MS.gene88037

KEGG: K08193
GO: GO:0005575 GO:0005887 GO:0006810 GO:0008150 GO:0016021 GO:0031224 GO:0031226 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF07690.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88037.t1	XP_003605397.2	98.4	443	7	0	1	443	1	443	8.30E-245	855.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88037.t1	Q9FKV1	73.1	449	96	3	1	443	3	432	2.2e-182	639.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88037.t1	G7JKS8	98.4	443	7	0	1	443	1	443	6.0e-245	855.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene24365	MS.gene88037	PPI
MS.gene88037	MS.gene056796	PPI
MS.gene88037	MS.gene044005	PPI
MS.gene88037	MS.gene023903	PPI
MS.gene88037	MS.gene062762	PPI
MS.gene88037	MS.gene019649	PPI
MS.gene88037	MS.gene019648	PPI
MS.gene88037	MS.gene013003	PPI
MS.gene88037	MS.gene48483	PPI
MS.gene88037	MS.gene054624	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88037.t1	MTR_4g030900	98.420	443	7	0	1	443	1	443	0.0	881
MS.gene88037.t1	MTR_7g077830	37.838	444	246	6	2	443	119	534	9.00e-93	290
MS.gene88037.t1	MTR_8g030600	36.712	444	251	5	2	443	173	588	4.55e-90	285
MS.gene88037.t1	MTR_3g463080	37.923	443	247	7	2	443	101	516	2.88e-87	275
MS.gene88037.t1	MTR_8g030600	35.838	346	203	4	2	345	173	501	7.40e-65	217
MS.gene88037.t1	MTR_4g116030	32.287	446	268	12	2	439	105	524	8.26e-63	212
MS.gene88037.t1	MTR_7g066780	31.066	441	277	6	4	442	91	506	5.17e-61	206
MS.gene88037.t1	MTR_5g069630	28.409	440	291	7	7	443	97	515	1.59e-51	182
MS.gene88037.t1	MTR_2g027710	43.030	165	93	1	231	395	71	234	5.30e-41	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88037.t1	AT5G44370	72.460	443	109	1	1	443	3	432	0.0	649
MS.gene88037.t1	AT4G00370	36.036	444	254	5	2	443	126	541	5.33e-89	281
MS.gene88037.t1	AT2G29650	35.892	443	256	6	2	443	97	512	6.22e-86	272
MS.gene88037.t1	AT2G29650	36.019	422	240	7	24	443	7	400	1.22e-80	255
MS.gene88037.t1	AT2G29650	35.971	417	237	7	29	443	2	390	2.91e-79	251
MS.gene88037.t1	AT5G20380	31.839	446	266	11	2	439	93	508	1.06e-61	209
MS.gene88037.t1	AT5G20380	31.839	446	266	11	2	439	145	560	3.37e-61	209
MS.gene88037.t1	AT2G38060	30.090	442	282	7	4	442	95	512	9.91e-59	201
MS.gene88037.t1	AT2G29650	35.535	318	188	5	2	318	97	398	4.70e-57	193
MS.gene88037.t1	AT3G46980	29.545	440	287	7	7	443	111	530	2.14e-55	192

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Find 107 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGACCTAGATCTTTCA+TGG	0.407378	4.3:-69568764	None:intergenic
AAAGTGGGGTTGGAATTCCT+TGG	0.520233	4.3:+69569054	MS.gene88037:CDS
AACACAAACATATTCAAATA+AGG	0.331068	4.3:-69569230	None:intergenic
AACACCAGCCTCCAACTTTC+TGG	0.167095	4.3:-69569608	None:intergenic
AACAGACCTAGATCTTTCAT+GGG	0.565307	4.3:-69568763	None:intergenic
AACCGGCAATAACGATTCAC+CGG	0.554785	4.3:-69568961	None:intergenic
AACGTGCAGTGACAAGAATT+AGG	0.367317	4.3:-69568671	None:intergenic
AAGAGTTCGGCTTCCGGTGC+CGG	0.424410	4.3:+69568942	MS.gene88037:CDS
AAGATCCAAATCAGACGCCT+TGG	0.548033	4.3:-69569579	None:intergenic
AAGTGGGGTTGGAATTCCTT+GGG	0.475309	4.3:+69569055	MS.gene88037:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTAGTTTGGTTAAGTTTAA+AGG	+	chr4.3:69568840-69568859	MS.gene88037:CDS	30.0%
CCTTCTCGTAATCAAATAAT+CGG	-	chr4.3:69569279-69569298	None:intergenic	30.0%
CCTTTAAACTTAACCAAACT+AGG	-	chr4.3:69568843-69568862	None:intergenic	30.0%
CGATTATTTGATTACGAGAA+GGG	+	chr4.3:69569277-69569296	MS.gene88037:CDS	30.0%
GCTAAAACAGTATGAATTGA+AGG	-	chr4.3:69568729-69568748	None:intergenic	30.0%
GGAATCAATCAATCAACAAA+GGG	+	chr4.3:69568495-69568514	MS.gene88037:CDS	30.0%
AAACAGACCTAGATCTTTCA+TGG	-	chr4.3:69568767-69568786	None:intergenic	35.0%
AACAGACCTAGATCTTTCAT+GGG	-	chr4.3:69568766-69568785	None:intergenic	35.0%
ACCATAAGAGGAATGAAAAG+AGG	-	chr4.3:69568611-69568630	None:intergenic	35.0%
ACTACTAGTGGAATGTATCT+TGG	+	chr4.3:69568792-69568811	MS.gene88037:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	69568378	69569709	69568378	ID=MS.gene88037
chr4.3	mRNA	69568378	69569709	69568378	ID=MS.gene88037.t1;Parent=MS.gene88037
chr4.3	exon	69568378	69569709	69568378	ID=MS.gene88037.t1.exon1;Parent=MS.gene88037.t1
chr4.3	CDS	69568378	69569709	69568378	ID=cds.MS.gene88037.t1;Parent=MS.gene88037.t1

Gene Sequence

>MS.gene88037

ATGCAGAAACTTCCAGTTCGTTACCTTATAGTCCTCTTAACCTTCATCTGCACATCGGTCTGTTACATAGAACGCGTCGGTTTTTCCATCGCATACACCGTCGCCGCCGACGCTGCCGGAATCAATCAATCAACAAAGGGTACAATTCTGTCCACATTCTACTACGGTTACGCTTGTTCCCAAGTTCCCGGCGGTTATTTCGCCCAGAAAATCGGTGGTCGTAAAATTCTCCTCTTTTCATTCCTCTTATGGTCCTTCACATGTGCACTTCTTCCATTAGATCCAAACAAAACCCTAATTCTTGTCACTGCACGTTTACTTGTTGGGGTTGCTCAAGGTTTCATTTTTCCTTCAATTCATACTGTTTTAGCTCAATGGGTCCCACCCCATGAAAGATCTAGGTCTGTTTCTTTGACTACTAGTGGAATGTATCTTGGTGCAGCTTTTGGAATGTTGTTTCTACCTAGTTTGGTTAAGTTTAAAGGTCCTCAATCTGTTTTTGTTGCTGAGAGTTTTTTAGGGTTTGTTTGGTGTTTTATTTGGTTTAGGTATAGTTCTGATCCTAAGAGTTCGGCTTCCGGTGCCGGTGAATCGTTATTGCCGGTTAATAAGAAGATTGATAGACGGGTTTCGGATCTTAAGGTTGGGGTTGAGAAAAATGGGGGTGAGGCGAAGAAAAGTGGGGTTGGAATTCCTTGGGTGAAGATTTTGACTAGTTTGCCTGTTTGGGCTATTGTGGTTAATAATTTTACTTTTCATTATGCTTTGTATGTGTTGATGAATTGGTTACCGACGTATTTCGAATTAGGGCTTAAGTTAAGTCTTCATGAAATGGGTTCGTCGAAGATGTTGCCTTATTTGAATATGTTTGTGTTTTCGAATATTGGTGGTGTTGTTGCCGATTATTTGATTACGAGAAGGGTTATGTCGGTGACTAGGACGAGAAAGTTTTTGAATACGGTTGGGTTTTTAGTTGCTTCGTTTGCATTGATTGTGATACCGAGTTTTAGAACTTCGGGTGGTGCTGTGTTTTGTTCTTCGGTAGCGCTTGGGTTTTTGGCGCTTGGTAGGGCTGGGTTTGCGGTGAATCATATGGATATTGCTCCGAGGTATGCTGGAATTGTGATGGGGGTTTCAAATACCGCTGGTACTTTGGCTGGTATTGTTGGTGTTGATCTTACTGGGAAATTACTCGAGGCTGCCAAGGCGTCTGATTTGGATCTTTCGACTCCAGAAAGTTGGAGGCTGGTGTTTTTCATTCCGGGACTTTTATGCGTTTTTAGTTCGCTGGTATTCTTGTTGTTTTCTACCGGGGAGAGGATTTTTGATTGA

Protein sequence

>MS.gene88037.t1

MQKLPVRYLIVLLTFICTSVCYIERVGFSIAYTVAADAAGINQSTKGTILSTFYYGYACSQVPGGYFAQKIGGRKILLFSFLLWSFTCALLPLDPNKTLILVTARLLVGVAQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAFGMLFLPSLVKFKGPQSVFVAESFLGFVWCFIWFRYSSDPKSSASGAGESLLPVNKKIDRRVSDLKVGVEKNGGEAKKSGVGIPWVKILTSLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLKLSLHEMGSSKMLPYLNMFVFSNIGGVVADYLITRRVMSVTRTRKFLNTVGFLVASFALIVIPSFRTSGGAVFCSSVALGFLALGRAGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAKASDLDLSTPESWRLVFFIPGLLCVFSSLVFLLFSTGERIFD