Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88037.t1 | XP_003605397.2 | 98.4 | 443 | 7 | 0 | 1 | 443 | 1 | 443 | 8.30E-245 | 855.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88037.t1 | Q9FKV1 | 73.1 | 449 | 96 | 3 | 1 | 443 | 3 | 432 | 2.2e-182 | 639.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88037.t1 | G7JKS8 | 98.4 | 443 | 7 | 0 | 1 | 443 | 1 | 443 | 6.0e-245 | 855.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88037 | MS.gene056796 | PPI |
| MS.gene88037 | MS.gene044005 | PPI |
| MS.gene88037 | MS.gene023903 | PPI |
| MS.gene88037 | MS.gene062762 | PPI |
| MS.gene88037 | MS.gene019649 | PPI |
| MS.gene88037 | MS.gene019648 | PPI |
| MS.gene88037 | MS.gene013003 | PPI |
| MS.gene88037 | MS.gene48483 | PPI |
| MS.gene88037 | MS.gene054624 | PPI |
| MS.gene88037 | MS.gene51840 | PPI |
| MS.gene24365 | MS.gene88037 | PPI |
| MS.gene88037 | MS.gene067063 | PPI |
| MS.gene88037 | MS.gene044004 | PPI |
| MS.gene88037 | MS.gene57998 | PPI |
| MS.gene88037 | MS.gene84825 | PPI |
| MS.gene88037 | MS.gene67151 | PPI |
| MS.gene88037 | MS.gene67091 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88037.t1 | MTR_4g030900 | 98.420 | 443 | 7 | 0 | 1 | 443 | 1 | 443 | 0.0 | 881 |
| MS.gene88037.t1 | MTR_7g077830 | 37.838 | 444 | 246 | 6 | 2 | 443 | 119 | 534 | 9.00e-93 | 290 |
| MS.gene88037.t1 | MTR_8g030600 | 36.712 | 444 | 251 | 5 | 2 | 443 | 173 | 588 | 4.55e-90 | 285 |
| MS.gene88037.t1 | MTR_3g463080 | 37.923 | 443 | 247 | 7 | 2 | 443 | 101 | 516 | 2.88e-87 | 275 |
| MS.gene88037.t1 | MTR_8g030600 | 35.838 | 346 | 203 | 4 | 2 | 345 | 173 | 501 | 7.40e-65 | 217 |
| MS.gene88037.t1 | MTR_4g116030 | 32.287 | 446 | 268 | 12 | 2 | 439 | 105 | 524 | 8.26e-63 | 212 |
| MS.gene88037.t1 | MTR_7g066780 | 31.066 | 441 | 277 | 6 | 4 | 442 | 91 | 506 | 5.17e-61 | 206 |
| MS.gene88037.t1 | MTR_5g069630 | 28.409 | 440 | 291 | 7 | 7 | 443 | 97 | 515 | 1.59e-51 | 182 |
| MS.gene88037.t1 | MTR_2g027710 | 43.030 | 165 | 93 | 1 | 231 | 395 | 71 | 234 | 5.30e-41 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88037.t1 | AT5G44370 | 72.460 | 443 | 109 | 1 | 1 | 443 | 3 | 432 | 0.0 | 649 |
| MS.gene88037.t1 | AT4G00370 | 36.036 | 444 | 254 | 5 | 2 | 443 | 126 | 541 | 5.33e-89 | 281 |
| MS.gene88037.t1 | AT2G29650 | 35.892 | 443 | 256 | 6 | 2 | 443 | 97 | 512 | 6.22e-86 | 272 |
| MS.gene88037.t1 | AT2G29650 | 36.019 | 422 | 240 | 7 | 24 | 443 | 7 | 400 | 1.22e-80 | 255 |
| MS.gene88037.t1 | AT2G29650 | 35.971 | 417 | 237 | 7 | 29 | 443 | 2 | 390 | 2.91e-79 | 251 |
| MS.gene88037.t1 | AT5G20380 | 31.839 | 446 | 266 | 11 | 2 | 439 | 93 | 508 | 1.06e-61 | 209 |
| MS.gene88037.t1 | AT5G20380 | 31.839 | 446 | 266 | 11 | 2 | 439 | 145 | 560 | 3.37e-61 | 209 |
| MS.gene88037.t1 | AT2G38060 | 30.090 | 442 | 282 | 7 | 4 | 442 | 95 | 512 | 9.91e-59 | 201 |
| MS.gene88037.t1 | AT2G29650 | 35.535 | 318 | 188 | 5 | 2 | 318 | 97 | 398 | 4.70e-57 | 193 |
| MS.gene88037.t1 | AT3G46980 | 29.545 | 440 | 287 | 7 | 7 | 443 | 111 | 530 | 2.14e-55 | 192 |
| MS.gene88037.t1 | AT3G46980 | 29.545 | 440 | 287 | 7 | 7 | 443 | 111 | 530 | 2.75e-55 | 192 |
| MS.gene88037.t1 | AT3G46980 | 29.545 | 440 | 287 | 7 | 7 | 443 | 159 | 578 | 1.04e-54 | 191 |
| MS.gene88037.t1 | AT2G38060 | 29.708 | 377 | 248 | 6 | 4 | 377 | 95 | 457 | 6.87e-49 | 175 |
| MS.gene88037.t1 | AT3G46980 | 30.495 | 364 | 230 | 7 | 83 | 443 | 7 | 350 | 1.52e-45 | 162 |
| MS.gene88037.t1 | AT3G46980 | 30.495 | 364 | 230 | 7 | 83 | 443 | 7 | 350 | 1.52e-45 | 162 |
| MS.gene88037.t1 | AT3G46980 | 30.495 | 364 | 230 | 7 | 83 | 443 | 7 | 350 | 1.59e-45 | 162 |
| MS.gene88037.t1 | AT3G46980 | 30.495 | 364 | 230 | 7 | 83 | 443 | 7 | 350 | 1.59e-45 | 162 |
| MS.gene88037.t1 | AT3G46980 | 28.525 | 305 | 196 | 6 | 141 | 443 | 2 | 286 | 1.60e-29 | 117 |
Find 107 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACCAGCCTCCAACTTTC+TGG | 0.167095 | 4.3:-69569608 | None:intergenic |
| CCTAGTTTGGTTAAGTTTAA+AGG | 0.174452 | 4.3:+69568840 | MS.gene88037:CDS |
| TTACCGACGTATTTCGAATT+AGG | 0.200889 | 4.3:+69569164 | MS.gene88037:CDS |
| ATTGTTGGTGTTGATCTTAC+TGG | 0.272404 | 4.3:+69569539 | MS.gene88037:CDS |
| TTTGACTAGTTTGCCTGTTT+GGG | 0.291056 | 4.3:+69569085 | MS.gene88037:CDS |
| ATGTATCTTGGTGCAGCTTT+TGG | 0.297021 | 4.3:+69568804 | MS.gene88037:CDS |
| TCACTGCACGTTTACTTGTT+GGG | 0.298817 | 4.3:+69568682 | MS.gene88037:CDS |
| TACCGACGTATTTCGAATTA+GGG | 0.308963 | 4.3:+69569165 | MS.gene88037:CDS |
| CGAAATAACCGCCGGGAACT+TGG | 0.309025 | 4.3:-69568557 | None:intergenic |
| GGCTGCCAAGGCGTCTGATT+TGG | 0.317450 | 4.3:+69569574 | MS.gene88037:CDS |
| AATGTTGTTTCTACCTAGTT+TGG | 0.318339 | 4.3:+69568827 | MS.gene88037:CDS |
| CTTTGTTGATTGATTGATTC+CGG | 0.319513 | 4.3:-69568493 | None:intergenic |
| TAAGTTAAGTCTTCATGAAA+TGG | 0.325737 | 4.3:+69569190 | MS.gene88037:CDS |
| AACACAAACATATTCAAATA+AGG | 0.331068 | 4.3:-69569230 | None:intergenic |
| TTCAAATACCGCTGGTACTT+TGG | 0.331484 | 4.3:+69569511 | MS.gene88037:CDS |
| GTCACTGCACGTTTACTTGT+TGG | 0.336931 | 4.3:+69568681 | MS.gene88037:CDS |
| CTATCAATCTTCTTATTAAC+CGG | 0.341138 | 4.3:-69568978 | None:intergenic |
| GAAGATTGATAGACGGGTTT+CGG | 0.343350 | 4.3:+69568989 | MS.gene88037:CDS |
| TCCGGCAGCGTCGGCGGCGA+CGG | 0.343534 | 4.3:-69568475 | None:intergenic |
| CTTTGTATGTGTTGATGAAT+TGG | 0.350434 | 4.3:+69569141 | MS.gene88037:CDS |
| GCACCGGAAGCCGAACTCTT+AGG | 0.365889 | 4.3:-69568939 | None:intergenic |
| AACGTGCAGTGACAAGAATT+AGG | 0.367317 | 4.3:-69568671 | None:intergenic |
| TACGCTTGTTCCCAAGTTCC+CGG | 0.371349 | 4.3:+69568546 | MS.gene88037:CDS |
| TGCCGGTGAATCGTTATTGC+CGG | 0.387504 | 4.3:+69568959 | MS.gene88037:CDS |
| CCTTCTCGTAATCAAATAAT+CGG | 0.388416 | 4.3:-69569276 | None:intergenic |
| TAGACGGGTTTCGGATCTTA+AGG | 0.394543 | 4.3:+69568998 | MS.gene88037:CDS |
| AAACAGACCTAGATCTTTCA+TGG | 0.407378 | 4.3:-69568764 | None:intergenic |
| GCTTGGTAGGGCTGGGTTTG+CGG | 0.408067 | 4.3:+69569439 | MS.gene88037:CDS |
| ACGTGCAGTGACAAGAATTA+GGG | 0.408785 | 4.3:-69568670 | None:intergenic |
| TGAAGGTTAAGAGGACTATA+AGG | 0.409578 | 4.3:-69568401 | None:intergenic |
| GGGTTTCGGATCTTAAGGTT+GGG | 0.411547 | 4.3:+69569003 | MS.gene88037:CDS |
| GGTACTTTGGCTGGTATTGT+TGG | 0.418203 | 4.3:+69569524 | MS.gene88037:CDS |
| AAGAGTTCGGCTTCCGGTGC+CGG | 0.424410 | 4.3:+69568942 | MS.gene88037:CDS |
| GGTTATTTCGCCCAGAAAAT+CGG | 0.426214 | 4.3:+69568570 | MS.gene88037:CDS |
| GATCCTAAGAGTTCGGCTTC+CGG | 0.428196 | 4.3:+69568936 | MS.gene88037:CDS |
| GCTAAAACAGTATGAATTGA+AGG | 0.438231 | 4.3:-69568726 | None:intergenic |
| ATCTTTCGACTCCAGAAAGT+TGG | 0.441510 | 4.3:+69569597 | MS.gene88037:CDS |
| ACTACTAGTGGAATGTATCT+TGG | 0.446805 | 4.3:+69568792 | MS.gene88037:CDS |
| AAGTTAAGTCTTCATGAAAT+GGG | 0.453234 | 4.3:+69569191 | MS.gene88037:CDS |
| TAGTTCTGATCCTAAGAGTT+CGG | 0.454552 | 4.3:+69568929 | MS.gene88037:CDS |
| CCTTTAAACTTAACCAAACT+AGG | 0.454681 | 4.3:-69568840 | None:intergenic |
| CGGGTTTCGGATCTTAAGGT+TGG | 0.458137 | 4.3:+69569002 | MS.gene88037:CDS |
| TTTGTTCTTCGGTAGCGCTT+GGG | 0.463940 | 4.3:+69569408 | MS.gene88037:CDS |
| AATACCGCTGGTACTTTGGC+TGG | 0.464982 | 4.3:+69569515 | MS.gene88037:CDS |
| GATATTGCTCCGAGGTATGC+TGG | 0.468252 | 4.3:+69569473 | MS.gene88037:CDS |
| AAGTGGGGTTGGAATTCCTT+GGG | 0.475309 | 4.3:+69569055 | MS.gene88037:CDS |
| TAATAAGAAGATTGATAGAC+GGG | 0.476333 | 4.3:+69568983 | MS.gene88037:CDS |
| TCCCACCCCATGAAAGATCT+AGG | 0.476934 | 4.3:+69568757 | MS.gene88037:CDS |
| TCTGTTTCTTTGACTACTAG+TGG | 0.480634 | 4.3:+69568780 | MS.gene88037:CDS |
| CGATTATTTGATTACGAGAA+GGG | 0.484206 | 4.3:+69569277 | MS.gene88037:CDS |
| GGGGTGAGGCGAAGAAAAGT+GGG | 0.484396 | 4.3:+69569039 | MS.gene88037:CDS |
| CACATGTGAAGGACCATAAG+AGG | 0.488050 | 4.3:-69568620 | None:intergenic |
| TTACTTGTTGGGGTTGCTCA+AGG | 0.496633 | 4.3:+69568693 | MS.gene88037:CDS |
| AGGTATGCTGGAATTGTGAT+GGG | 0.500300 | 4.3:+69569485 | MS.gene88037:CDS |
| AGGACTATAAGGTAACGAAC+TGG | 0.502616 | 4.3:-69568390 | None:intergenic |
| GACTCCAGAAAGTTGGAGGC+TGG | 0.503695 | 4.3:+69569604 | MS.gene88037:CDS |
| CACTGCACGTTTACTTGTTG+GGG | 0.503801 | 4.3:+69568683 | MS.gene88037:CDS |
| TTTGCCTGTTTGGGCTATTG+TGG | 0.504221 | 4.3:+69569094 | MS.gene88037:CDS |
| GAAATAACCGCCGGGAACTT+GGG | 0.505954 | 4.3:-69568556 | None:intergenic |
| GGTTTCGGATCTTAAGGTTG+GGG | 0.509229 | 4.3:+69569004 | MS.gene88037:CDS |
| CAATAACGATTCACCGGCAC+CGG | 0.510862 | 4.3:-69568955 | None:intergenic |
| TTTCGACTCCAGAAAGTTGG+AGG | 0.514699 | 4.3:+69569600 | MS.gene88037:CDS |
| TTAACCACAATAGCCCAAAC+AGG | 0.515483 | 4.3:-69569098 | None:intergenic |
| GAGGTATGCTGGAATTGTGA+TGG | 0.517053 | 4.3:+69569484 | MS.gene88037:CDS |
| ACCGTCGCCGCCGACGCTGC+CGG | 0.517096 | 4.3:+69568474 | MS.gene88037:CDS |
| AAAGTGGGGTTGGAATTCCT+TGG | 0.520233 | 4.3:+69569054 | MS.gene88037:CDS |
| ACCTAGATCTTTCATGGGGT+GGG | 0.521976 | 4.3:-69568758 | None:intergenic |
| GAAGGGTTATGTCGGTGACT+AGG | 0.528281 | 4.3:+69569294 | MS.gene88037:CDS |
| TGGGTTTGCGGTGAATCATA+TGG | 0.530242 | 4.3:+69569451 | MS.gene88037:CDS |
| ATGTGCAGATGAAGGTTAAG+AGG | 0.530767 | 4.3:-69568410 | None:intergenic |
| CCGATTATTTGATTACGAGA+AGG | 0.531819 | 4.3:+69569276 | MS.gene88037:CDS |
| GACCTAGATCTTTCATGGGG+TGG | 0.537966 | 4.3:-69568759 | None:intergenic |
| TTGTTGGTGTTGATCTTACT+GGG | 0.540874 | 4.3:+69569540 | MS.gene88037:CDS |
| AAGATCCAAATCAGACGCCT+TGG | 0.548033 | 4.3:-69569579 | None:intergenic |
| GAGGCGAAGAAAAGTGGGGT+TGG | 0.550060 | 4.3:+69569044 | MS.gene88037:CDS |
| ACCATAAGAGGAATGAAAAG+AGG | 0.550822 | 4.3:-69568608 | None:intergenic |
| ATTGATTCCGGCAGCGTCGG+CGG | 0.552249 | 4.3:-69568481 | None:intergenic |
| AACCGGCAATAACGATTCAC+CGG | 0.554785 | 4.3:-69568961 | None:intergenic |
| ATTCTGTCCACATTCTACTA+CGG | 0.557355 | 4.3:+69568522 | MS.gene88037:CDS |
| GGAATCAATCAATCAACAAA+GGG | 0.559790 | 4.3:+69568495 | MS.gene88037:CDS |
| GGCGGCGACGGTGTATGCGA+TGG | 0.559813 | 4.3:-69568463 | None:intergenic |
| TTGATTGATTCCGGCAGCGT+CGG | 0.564736 | 4.3:-69568484 | None:intergenic |
| AACAGACCTAGATCTTTCAT+GGG | 0.565307 | 4.3:-69568763 | None:intergenic |
| TGGAAGAAGTGCACATGTGA+AGG | 0.577324 | 4.3:-69568631 | None:intergenic |
| CGGAATCAATCAATCAACAA+AGG | 0.577810 | 4.3:+69568494 | MS.gene88037:CDS |
| ACAGACCGATGTGCAGATGA+AGG | 0.578128 | 4.3:-69568418 | None:intergenic |
| TTAATAAGAAGATTGATAGA+CGG | 0.582928 | 4.3:+69568982 | MS.gene88037:CDS |
| TTCTGGGCGAAATAACCGCC+GGG | 0.584077 | 4.3:-69568564 | None:intergenic |
| GATTACGAGAAGGGTTATGT+CGG | 0.589669 | 4.3:+69569286 | MS.gene88037:CDS |
| CTAGTCAAAATCTTCACCCA+AGG | 0.605141 | 4.3:-69569071 | None:intergenic |
| ATCACAATTCCAGCATACCT+CGG | 0.611975 | 4.3:-69569482 | None:intergenic |
| GAAATTACTCGAGGCTGCCA+AGG | 0.614700 | 4.3:+69569562 | MS.gene88037:CDS |
| TTTCTGGGCGAAATAACCGC+CGG | 0.614744 | 4.3:-69568565 | None:intergenic |
| CCACCCGAAGTTCTAAAACT+CGG | 0.621204 | 4.3:-69569377 | None:intergenic |
| GGTATGCTGGAATTGTGATG+GGG | 0.626679 | 4.3:+69569486 | MS.gene88037:CDS |
| AGCGTAACCGTAGTAGAATG+TGG | 0.642404 | 4.3:-69568529 | None:intergenic |
| GTCTGTTACATAGAACGCGT+CGG | 0.644289 | 4.3:+69568435 | MS.gene88037:CDS |
| GGGTGAGGCGAAGAAAAGTG+GGG | 0.652496 | 4.3:+69569040 | MS.gene88037:CDS |
| CTTAACCTTCATCTGCACAT+CGG | 0.658001 | 4.3:+69568413 | MS.gene88037:CDS |
| TATTTCGCCCAGAAAATCGG+TGG | 0.664311 | 4.3:+69568573 | MS.gene88037:CDS |
| TCTTACTGGGAAATTACTCG+AGG | 0.665229 | 4.3:+69569553 | MS.gene88037:CDS |
| GTATGCTGGAATTGTGATGG+GGG | 0.680884 | 4.3:+69569487 | MS.gene88037:CDS |
| AGCCCTAATTCGAAATACGT+CGG | 0.689551 | 4.3:-69569167 | None:intergenic |
| AATACCAGCCAAAGTACCAG+CGG | 0.731925 | 4.3:-69569519 | None:intergenic |
| ACAGACCTAGATCTTTCATG+GGG | 0.746155 | 4.3:-69568762 | None:intergenic |
| ATCATATGGATATTGCTCCG+AGG | 0.747409 | 4.3:+69569465 | MS.gene88037:CDS |
| GCTTGTTCCCAAGTTCCCGG+CGG | 0.780032 | 4.3:+69568549 | MS.gene88037:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACAAACATATTCAAATA+AGG | - | chr4.3:69569233-69569252 | None:intergenic | 20.0% |
| !! | TTAATAAGAAGATTGATAGA+CGG | + | chr4.3:69568982-69569001 | MS.gene88037:CDS | 20.0% |
| ! | AAGTTAAGTCTTCATGAAAT+GGG | + | chr4.3:69569191-69569210 | MS.gene88037:CDS | 25.0% |
| ! | CTATCAATCTTCTTATTAAC+CGG | - | chr4.3:69568981-69569000 | None:intergenic | 25.0% |
| ! | TAAGTTAAGTCTTCATGAAA+TGG | + | chr4.3:69569190-69569209 | MS.gene88037:CDS | 25.0% |
| ! | TAATAAGAAGATTGATAGAC+GGG | + | chr4.3:69568983-69569002 | MS.gene88037:CDS | 25.0% |
| !! | ATGTTTGTGTTTTCGAATAT+TGG | + | chr4.3:69569242-69569261 | MS.gene88037:CDS | 25.0% |
| !!! | TTTGGTGTTTTATTTGGTTT+AGG | + | chr4.3:69568904-69568923 | MS.gene88037:CDS | 25.0% |
| CCTAGTTTGGTTAAGTTTAA+AGG | + | chr4.3:69568840-69568859 | MS.gene88037:CDS | 30.0% | |
| CCTTCTCGTAATCAAATAAT+CGG | - | chr4.3:69569279-69569298 | None:intergenic | 30.0% | |
| CCTTTAAACTTAACCAAACT+AGG | - | chr4.3:69568843-69568862 | None:intergenic | 30.0% | |
| CGATTATTTGATTACGAGAA+GGG | + | chr4.3:69569277-69569296 | MS.gene88037:CDS | 30.0% | |
| GCTAAAACAGTATGAATTGA+AGG | - | chr4.3:69568729-69568748 | None:intergenic | 30.0% | |
| GGAATCAATCAATCAACAAA+GGG | + | chr4.3:69568495-69568514 | MS.gene88037:CDS | 30.0% | |
| ! | AGAAAGTTTTTGAATACGGT+TGG | + | chr4.3:69569320-69569339 | MS.gene88037:CDS | 30.0% |
| ! | CTTTGTATGTGTTGATGAAT+TGG | + | chr4.3:69569141-69569160 | MS.gene88037:CDS | 30.0% |
| ! | CTTTGTTGATTGATTGATTC+CGG | - | chr4.3:69568496-69568515 | None:intergenic | 30.0% |
| ! | GAAAGTTTTTGAATACGGTT+GGG | + | chr4.3:69569321-69569340 | MS.gene88037:CDS | 30.0% |
| ! | GACGAGAAAGTTTTTGAATA+CGG | + | chr4.3:69569316-69569335 | MS.gene88037:CDS | 30.0% |
| ! | TTTGTGTTTTCGAATATTGG+TGG | + | chr4.3:69569245-69569264 | MS.gene88037:CDS | 30.0% |
| !! | AATGTTGTTTCTACCTAGTT+TGG | + | chr4.3:69568827-69568846 | MS.gene88037:CDS | 30.0% |
| !!! | ACAAGAATTAGGGTTTTGTT+TGG | - | chr4.3:69568663-69568682 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTAGGGTTTGTT+TGG | + | chr4.3:69568886-69568905 | MS.gene88037:CDS | 30.0% |
| !!! | GGTTTGTTTGGTGTTTTATT+TGG | + | chr4.3:69568898-69568917 | MS.gene88037:CDS | 30.0% |
| !!! | GTATTCTTGTTGTTTTCTAC+CGG | + | chr4.3:69569668-69569687 | MS.gene88037:CDS | 30.0% |
| !!! | TATTCTTGTTGTTTTCTACC+GGG | + | chr4.3:69569669-69569688 | MS.gene88037:CDS | 30.0% |
| !!! | TCATACTGTTTTAGCTCAAT+GGG | + | chr4.3:69568734-69568753 | MS.gene88037:CDS | 30.0% |
| !!! | TTCATACTGTTTTAGCTCAA+TGG | + | chr4.3:69568733-69568752 | MS.gene88037:CDS | 30.0% |
| !!! | TTGTTGCTGAGAGTTTTTTA+GGG | + | chr4.3:69568877-69568896 | MS.gene88037:CDS | 30.0% |
| !!! | TTTGTTGCTGAGAGTTTTTT+AGG | + | chr4.3:69568876-69568895 | MS.gene88037:CDS | 30.0% |
| AAACAGACCTAGATCTTTCA+TGG | - | chr4.3:69568767-69568786 | None:intergenic | 35.0% | |
| AACAGACCTAGATCTTTCAT+GGG | - | chr4.3:69568766-69568785 | None:intergenic | 35.0% | |
| ACCATAAGAGGAATGAAAAG+AGG | - | chr4.3:69568611-69568630 | None:intergenic | 35.0% | |
| ACTACTAGTGGAATGTATCT+TGG | + | chr4.3:69568792-69568811 | MS.gene88037:CDS | 35.0% | |
| ATTCTGTCCACATTCTACTA+CGG | + | chr4.3:69568522-69568541 | MS.gene88037:CDS | 35.0% | |
| CCGATTATTTGATTACGAGA+AGG | + | chr4.3:69569276-69569295 | MS.gene88037:CDS | 35.0% | |
| CGGAATCAATCAATCAACAA+AGG | + | chr4.3:69568494-69568513 | MS.gene88037:CDS | 35.0% | |
| CTAAAAACGCATAAAAGTCC+CGG | - | chr4.3:69569641-69569660 | None:intergenic | 35.0% | |
| TACCGACGTATTTCGAATTA+GGG | + | chr4.3:69569165-69569184 | MS.gene88037:CDS | 35.0% | |
| TCAGCAACAAAAACAGATTG+AGG | - | chr4.3:69568867-69568886 | None:intergenic | 35.0% | |
| TGAAGGTTAAGAGGACTATA+AGG | - | chr4.3:69568404-69568423 | None:intergenic | 35.0% | |
| TTACCGACGTATTTCGAATT+AGG | + | chr4.3:69569164-69569183 | MS.gene88037:CDS | 35.0% | |
| ! | TCCTCTTTTCATTCCTCTTA+TGG | + | chr4.3:69568607-69568626 | MS.gene88037:CDS | 35.0% |
| ! | TCTGTTTCTTTGACTACTAG+TGG | + | chr4.3:69568780-69568799 | MS.gene88037:CDS | 35.0% |
| !! | ATTGTTGGTGTTGATCTTAC+TGG | + | chr4.3:69569539-69569558 | MS.gene88037:CDS | 35.0% |
| !! | TAGTTCTGATCCTAAGAGTT+CGG | + | chr4.3:69568929-69568948 | MS.gene88037:CDS | 35.0% |
| !! | TTGTTGGTGTTGATCTTACT+GGG | + | chr4.3:69569540-69569559 | MS.gene88037:CDS | 35.0% |
| !! | TTTGACTAGTTTGCCTGTTT+GGG | + | chr4.3:69569085-69569104 | MS.gene88037:CDS | 35.0% |
| !!! | AGGGTTTTGTTTGGATCTAA+TGG | - | chr4.3:69568654-69568673 | None:intergenic | 35.0% |
| !!! | ATACCGAGTTTTAGAACTTC+GGG | + | chr4.3:69569374-69569393 | MS.gene88037:CDS | 35.0% |
| !!! | ATTCTTGTTGTTTTCTACCG+GGG | + | chr4.3:69569670-69569689 | MS.gene88037:CDS | 35.0% |
| !!! | GATACCGAGTTTTAGAACTT+CGG | + | chr4.3:69569373-69569392 | MS.gene88037:CDS | 35.0% |
| !!! | TTTATGCGTTTTTAGTTCGC+TGG | + | chr4.3:69569646-69569665 | MS.gene88037:CDS | 35.0% |
| !!! | TTTTGACTAGTTTGCCTGTT+TGG | + | chr4.3:69569084-69569103 | MS.gene88037:CDS | 35.0% |
| AACGTGCAGTGACAAGAATT+AGG | - | chr4.3:69568674-69568693 | None:intergenic | 40.0% | |
| AAGGTTGGGGTTGAGAAAAA+TGG | + | chr4.3:69569017-69569036 | MS.gene88037:CDS | 40.0% | |
| ACAGACCTAGATCTTTCATG+GGG | - | chr4.3:69568765-69568784 | None:intergenic | 40.0% | |
| ACGTGCAGTGACAAGAATTA+GGG | - | chr4.3:69568673-69568692 | None:intergenic | 40.0% | |
| AGCCCTAATTCGAAATACGT+CGG | - | chr4.3:69569170-69569189 | None:intergenic | 40.0% | |
| AGGACTATAAGGTAACGAAC+TGG | - | chr4.3:69568393-69568412 | None:intergenic | 40.0% | |
| AGGTATGCTGGAATTGTGAT+GGG | + | chr4.3:69569485-69569504 | MS.gene88037:CDS | 40.0% | |
| AGGTTGGGGTTGAGAAAAAT+GGG | + | chr4.3:69569018-69569037 | MS.gene88037:CDS | 40.0% | |
| ATCACAATTCCAGCATACCT+CGG | - | chr4.3:69569485-69569504 | None:intergenic | 40.0% | |
| ATCATATGGATATTGCTCCG+AGG | + | chr4.3:69569465-69569484 | MS.gene88037:CDS | 40.0% | |
| ATCTTTCGACTCCAGAAAGT+TGG | + | chr4.3:69569597-69569616 | MS.gene88037:CDS | 40.0% | |
| ATGTGCAGATGAAGGTTAAG+AGG | - | chr4.3:69568413-69568432 | None:intergenic | 40.0% | |
| CTAGTCAAAATCTTCACCCA+AGG | - | chr4.3:69569074-69569093 | None:intergenic | 40.0% | |
| CTTAACCTTCATCTGCACAT+CGG | + | chr4.3:69568413-69568432 | MS.gene88037:CDS | 40.0% | |
| GATTACGAGAAGGGTTATGT+CGG | + | chr4.3:69569286-69569305 | MS.gene88037:CDS | 40.0% | |
| TCAATCAAAAATCCTCTCCC+CGG | - | chr4.3:69569690-69569709 | None:intergenic | 40.0% | |
| TCACTGCACGTTTACTTGTT+GGG | + | chr4.3:69568682-69568701 | MS.gene88037:CDS | 40.0% | |
| TCTTACTGGGAAATTACTCG+AGG | + | chr4.3:69569553-69569572 | MS.gene88037:CDS | 40.0% | |
| TTAACCACAATAGCCCAAAC+AGG | - | chr4.3:69569101-69569120 | None:intergenic | 40.0% | |
| TTCAAATACCGCTGGTACTT+TGG | + | chr4.3:69569511-69569530 | MS.gene88037:CDS | 40.0% | |
| ! | GAAGATTGATAGACGGGTTT+CGG | + | chr4.3:69568989-69569008 | MS.gene88037:CDS | 40.0% |
| ! | GGTTATTTCGCCCAGAAAAT+CGG | + | chr4.3:69568570-69568589 | MS.gene88037:CDS | 40.0% |
| !! | ATGTATCTTGGTGCAGCTTT+TGG | + | chr4.3:69568804-69568823 | MS.gene88037:CDS | 40.0% |
| !!! | TGGTGCTGTGTTTTGTTCTT+CGG | + | chr4.3:69569397-69569416 | MS.gene88037:CDS | 40.0% |
| !!! | TTTACGACCACCGATTTTCT+GGG | - | chr4.3:69568583-69568602 | None:intergenic | 40.0% |
| !!! | TTTTACGACCACCGATTTTC+TGG | - | chr4.3:69568584-69568603 | None:intergenic | 40.0% |
| AAAGTGGGGTTGGAATTCCT+TGG | + | chr4.3:69569054-69569073 | MS.gene88037:CDS | 45.0% | |
| AACCGGCAATAACGATTCAC+CGG | - | chr4.3:69568964-69568983 | None:intergenic | 45.0% | |
| AAGATCCAAATCAGACGCCT+TGG | - | chr4.3:69569582-69569601 | None:intergenic | 45.0% | |
| AAGTGGGGTTGGAATTCCTT+GGG | + | chr4.3:69569055-69569074 | MS.gene88037:CDS | 45.0% | |
| ACCTAGATCTTTCATGGGGT+GGG | - | chr4.3:69568761-69568780 | None:intergenic | 45.0% | |
| AGCGTAACCGTAGTAGAATG+TGG | - | chr4.3:69568532-69568551 | None:intergenic | 45.0% | |
| CACATGTGAAGGACCATAAG+AGG | - | chr4.3:69568623-69568642 | None:intergenic | 45.0% | |
| GAGGTATGCTGGAATTGTGA+TGG | + | chr4.3:69569484-69569503 | MS.gene88037:CDS | 45.0% | |
| GGGTTTCGGATCTTAAGGTT+GGG | + | chr4.3:69569003-69569022 | MS.gene88037:CDS | 45.0% | |
| GGTACTTTGGCTGGTATTGT+TGG | + | chr4.3:69569524-69569543 | MS.gene88037:CDS | 45.0% | |
| GGTATGCTGGAATTGTGATG+GGG | + | chr4.3:69569486-69569505 | MS.gene88037:CDS | 45.0% | |
| GGTTGGGGTTGAGAAAAATG+GGG | + | chr4.3:69569019-69569038 | MS.gene88037:CDS | 45.0% | |
| GGTTTCGGATCTTAAGGTTG+GGG | + | chr4.3:69569004-69569023 | MS.gene88037:CDS | 45.0% | |
| GTATGCTGGAATTGTGATGG+GGG | + | chr4.3:69569487-69569506 | MS.gene88037:CDS | 45.0% | |
| GTCACTGCACGTTTACTTGT+TGG | + | chr4.3:69568681-69568700 | MS.gene88037:CDS | 45.0% | |
| GTCTGTTACATAGAACGCGT+CGG | + | chr4.3:69568435-69568454 | MS.gene88037:CDS | 45.0% | |
| GTTGGGGTTGAGAAAAATGG+GGG | + | chr4.3:69569020-69569039 | MS.gene88037:CDS | 45.0% | |
| TATTTCGCCCAGAAAATCGG+TGG | + | chr4.3:69568573-69568592 | MS.gene88037:CDS | 45.0% | |
| TGGGTTTGCGGTGAATCATA+TGG | + | chr4.3:69569451-69569470 | MS.gene88037:CDS | 45.0% | |
| TTTCGACTCCAGAAAGTTGG+AGG | + | chr4.3:69569600-69569619 | MS.gene88037:CDS | 45.0% | |
| TTTGCCTGTTTGGGCTATTG+TGG | + | chr4.3:69569094-69569113 | MS.gene88037:CDS | 45.0% | |
| TTTGTTCTTCGGTAGCGCTT+GGG | + | chr4.3:69569408-69569427 | MS.gene88037:CDS | 45.0% | |
| ! | AATACCAGCCAAAGTACCAG+CGG | - | chr4.3:69569522-69569541 | None:intergenic | 45.0% |
| ! | AGGCTGGTGTTTTTCATTCC+GGG | + | chr4.3:69569620-69569639 | MS.gene88037:CDS | 45.0% |
| ! | CACTGCACGTTTACTTGTTG+GGG | + | chr4.3:69568683-69568702 | MS.gene88037:CDS | 45.0% |
| ! | GAGGCTGGTGTTTTTCATTC+CGG | + | chr4.3:69569619-69569638 | MS.gene88037:CDS | 45.0% |
| ! | TAGACGGGTTTCGGATCTTA+AGG | + | chr4.3:69568998-69569017 | MS.gene88037:CDS | 45.0% |
| ! | TGGAAGAAGTGCACATGTGA+AGG | - | chr4.3:69568634-69568653 | None:intergenic | 45.0% |
| ! | TTACTTGTTGGGGTTGCTCA+AGG | + | chr4.3:69568693-69568712 | MS.gene88037:CDS | 45.0% |
| ! | TTTTGTTCTTCGGTAGCGCT+TGG | + | chr4.3:69569407-69569426 | MS.gene88037:CDS | 45.0% |
| !! | CCACCCGAAGTTCTAAAACT+CGG | - | chr4.3:69569380-69569399 | None:intergenic | 45.0% |
| AACACCAGCCTCCAACTTTC+TGG | - | chr4.3:69569611-69569630 | None:intergenic | 50.0% | |
| AATACCGCTGGTACTTTGGC+TGG | + | chr4.3:69569515-69569534 | MS.gene88037:CDS | 50.0% | |
| ACAGACCGATGTGCAGATGA+AGG | - | chr4.3:69568421-69568440 | None:intergenic | 50.0% | |
| ATGGGGGTTTCAAATACCGC+TGG | + | chr4.3:69569503-69569522 | MS.gene88037:CDS | 50.0% | |
| CAATAACGATTCACCGGCAC+CGG | - | chr4.3:69568958-69568977 | None:intergenic | 50.0% | |
| CGGGTTTCGGATCTTAAGGT+TGG | + | chr4.3:69569002-69569021 | MS.gene88037:CDS | 50.0% | |
| GAAATAACCGCCGGGAACTT+GGG | - | chr4.3:69568559-69568578 | None:intergenic | 50.0% | |
| GAAATTACTCGAGGCTGCCA+AGG | + | chr4.3:69569562-69569581 | MS.gene88037:CDS | 50.0% | |
| GAAGGGTTATGTCGGTGACT+AGG | + | chr4.3:69569294-69569313 | MS.gene88037:CDS | 50.0% | |
| GACCTAGATCTTTCATGGGG+TGG | - | chr4.3:69568762-69568781 | None:intergenic | 50.0% | |
| GATATTGCTCCGAGGTATGC+TGG | + | chr4.3:69569473-69569492 | MS.gene88037:CDS | 50.0% | |
| GATCCTAAGAGTTCGGCTTC+CGG | + | chr4.3:69568936-69568955 | MS.gene88037:CDS | 50.0% | |
| GGTTGAGAAAAATGGGGGTG+AGG | + | chr4.3:69569025-69569044 | MS.gene88037:CDS | 50.0% | |
| TACGCTTGTTCCCAAGTTCC+CGG | + | chr4.3:69568546-69568565 | MS.gene88037:CDS | 50.0% | |
| TCCCACCCCATGAAAGATCT+AGG | + | chr4.3:69568757-69568776 | MS.gene88037:CDS | 50.0% | |
| TGCCGGTGAATCGTTATTGC+CGG | + | chr4.3:69568959-69568978 | MS.gene88037:CDS | 50.0% | |
| TTTCTGGGCGAAATAACCGC+CGG | - | chr4.3:69568568-69568587 | None:intergenic | 50.0% | |
| ! | TTCGGTAGCGCTTGGGTTTT+TGG | + | chr4.3:69569415-69569434 | MS.gene88037:CDS | 50.0% |
| ! | TTGATTGATTCCGGCAGCGT+CGG | - | chr4.3:69568487-69568506 | None:intergenic | 50.0% |
| !!! | CCGAGTTTTAGAACTTCGGG+TGG | + | chr4.3:69569377-69569396 | MS.gene88037:CDS | 50.0% |
| !!! | TGGGTTTTTGGCGCTTGGTA+GGG | + | chr4.3:69569427-69569446 | MS.gene88037:CDS | 50.0% |
| !!! | TGTTGTTTTCTACCGGGGAG+AGG | + | chr4.3:69569675-69569694 | MS.gene88037:CDS | 50.0% |
| !!! | TTGGGTTTTTGGCGCTTGGT+AGG | + | chr4.3:69569426-69569445 | MS.gene88037:CDS | 50.0% |
| CGAAATAACCGCCGGGAACT+TGG | - | chr4.3:69568560-69568579 | None:intergenic | 55.0% | |
| GACTCCAGAAAGTTGGAGGC+TGG | + | chr4.3:69569604-69569623 | MS.gene88037:CDS | 55.0% | |
| GAGGCGAAGAAAAGTGGGGT+TGG | + | chr4.3:69569044-69569063 | MS.gene88037:CDS | 55.0% | |
| GGGGTGAGGCGAAGAAAAGT+GGG | + | chr4.3:69569039-69569058 | MS.gene88037:CDS | 55.0% | |
| GGGTGAGGCGAAGAAAAGTG+GGG | + | chr4.3:69569040-69569059 | MS.gene88037:CDS | 55.0% | |
| TTCTGGGCGAAATAACCGCC+GGG | - | chr4.3:69568567-69568586 | None:intergenic | 55.0% | |
| ! | TTTTGGCGCTTGGTAGGGCT+GGG | + | chr4.3:69569432-69569451 | MS.gene88037:CDS | 55.0% |
| !! | TTTTTGGCGCTTGGTAGGGC+TGG | + | chr4.3:69569431-69569450 | MS.gene88037:CDS | 55.0% |
| AAGAGTTCGGCTTCCGGTGC+CGG | + | chr4.3:69568942-69568961 | MS.gene88037:CDS | 60.0% | |
| GCACCGGAAGCCGAACTCTT+AGG | - | chr4.3:69568942-69568961 | None:intergenic | 60.0% | |
| GCTTGGTAGGGCTGGGTTTG+CGG | + | chr4.3:69569439-69569458 | MS.gene88037:CDS | 60.0% | |
| GCTTGTTCCCAAGTTCCCGG+CGG | + | chr4.3:69568549-69568568 | MS.gene88037:CDS | 60.0% | |
| GGGGGTGAGGCGAAGAAAAG+TGG | + | chr4.3:69569038-69569057 | MS.gene88037:CDS | 60.0% | |
| ! | ATTGATTCCGGCAGCGTCGG+CGG | - | chr4.3:69568484-69568503 | None:intergenic | 60.0% |
| ! | GGCTGCCAAGGCGTCTGATT+TGG | + | chr4.3:69569574-69569593 | MS.gene88037:CDS | 60.0% |
| !!! | GCGCTTGGGTTTTTGGCGCT+TGG | + | chr4.3:69569422-69569441 | MS.gene88037:CDS | 60.0% |
| GGCGGCGACGGTGTATGCGA+TGG | - | chr4.3:69568466-69568485 | None:intergenic | 70.0% | |
| ! | ACCGTCGCCGCCGACGCTGC+CGG | + | chr4.3:69568474-69568493 | MS.gene88037:CDS | 80.0% |
| !!! | TCCGGCAGCGTCGGCGGCGA+CGG | - | chr4.3:69568478-69568497 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 69568378 | 69569709 | 69568378 | ID=MS.gene88037 |
| chr4.3 | mRNA | 69568378 | 69569709 | 69568378 | ID=MS.gene88037.t1;Parent=MS.gene88037 |
| chr4.3 | exon | 69568378 | 69569709 | 69568378 | ID=MS.gene88037.t1.exon1;Parent=MS.gene88037.t1 |
| chr4.3 | CDS | 69568378 | 69569709 | 69568378 | ID=cds.MS.gene88037.t1;Parent=MS.gene88037.t1 |
| Gene Sequence |
| Protein sequence |
