Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88992.t1 | XP_004497487.1 | 70.6 | 517 | 152 | 0 | 1 | 517 | 40 | 556 | 1.20E-215 | 759.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88992.t1 | B9SCB6 | 51.2 | 514 | 245 | 3 | 1 | 514 | 42 | 549 | 2.0e-153 | 543.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88992.t1 | A0A1S2Y0Q7 | 70.6 | 517 | 152 | 0 | 1 | 517 | 40 | 556 | 8.9e-216 | 759.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene88992 | 0.877721 | 5.01E-69 | -1.69E-46 |
| MS.gene060119 | MS.gene88992 | 0.970298 | 2.10E-131 | -1.69E-46 |
| MS.gene060120 | MS.gene88992 | 0.975274 | 1.18E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066310 | MS.gene88992 | PPI |
| MS.gene88992 | MS.gene42723 | PPI |
| MS.gene038982 | MS.gene88992 | PPI |
| MS.gene88992 | MS.gene069726 | PPI |
| MS.gene88992 | MS.gene045736 | PPI |
| MS.gene066316 | MS.gene88992 | PPI |
| MS.gene77594 | MS.gene88992 | PPI |
| MS.gene038985 | MS.gene88992 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88992.t1 | MTR_6g039440 | 68.665 | 517 | 162 | 0 | 1 | 517 | 37 | 553 | 0.0 | 754 |
| MS.gene88992.t1 | MTR_5g062230 | 69.052 | 517 | 160 | 0 | 1 | 517 | 37 | 553 | 0.0 | 752 |
| MS.gene88992.t1 | MTR_6g008560 | 67.181 | 518 | 169 | 1 | 1 | 517 | 40 | 557 | 0.0 | 746 |
| MS.gene88992.t1 | MTR_3g464190 | 66.409 | 518 | 173 | 1 | 1 | 517 | 40 | 557 | 0.0 | 728 |
| MS.gene88992.t1 | MTR_4g048460 | 66.538 | 517 | 173 | 0 | 1 | 517 | 45 | 561 | 0.0 | 721 |
| MS.gene88992.t1 | MTR_5g073200 | 66.279 | 516 | 173 | 1 | 1 | 515 | 32 | 547 | 0.0 | 707 |
| MS.gene88992.t1 | MTR_5g073260 | 64.740 | 519 | 181 | 2 | 1 | 517 | 34 | 552 | 0.0 | 699 |
| MS.gene88992.t1 | MTR_5g094620 | 63.250 | 517 | 171 | 1 | 1 | 517 | 40 | 537 | 0.0 | 687 |
| MS.gene88992.t1 | MTR_4g081460 | 58.904 | 511 | 208 | 1 | 9 | 517 | 52 | 562 | 0.0 | 640 |
| MS.gene88992.t1 | MTR_6g008560 | 66.085 | 401 | 136 | 0 | 117 | 517 | 1 | 401 | 0.0 | 576 |
| MS.gene88992.t1 | MTR_4g048460 | 65.952 | 420 | 143 | 0 | 1 | 420 | 45 | 464 | 0.0 | 575 |
| MS.gene88992.t1 | MTR_8g007515 | 44.595 | 518 | 280 | 5 | 5 | 517 | 41 | 556 | 1.81e-162 | 473 |
| MS.gene88992.t1 | MTR_2g082010 | 43.570 | 521 | 288 | 6 | 1 | 517 | 50 | 568 | 1.49e-161 | 471 |
| MS.gene88992.t1 | MTR_2g081980 | 44.509 | 519 | 280 | 8 | 5 | 517 | 41 | 557 | 1.46e-159 | 465 |
| MS.gene88992.t1 | MTR_2g082060 | 42.065 | 523 | 284 | 8 | 1 | 517 | 44 | 553 | 2.38e-147 | 434 |
| MS.gene88992.t1 | MTR_4g019550 | 40.344 | 523 | 289 | 7 | 5 | 517 | 49 | 558 | 9.25e-136 | 404 |
| MS.gene88992.t1 | MTR_2g082050 | 38.614 | 505 | 251 | 8 | 14 | 515 | 9 | 457 | 2.45e-123 | 369 |
| MS.gene88992.t1 | MTR_4g045810 | 35.446 | 505 | 322 | 2 | 12 | 515 | 78 | 579 | 1.79e-111 | 343 |
| MS.gene88992.t1 | MTR_2g089130 | 34.545 | 495 | 308 | 5 | 5 | 495 | 62 | 544 | 1.94e-103 | 322 |
| MS.gene88992.t1 | MTR_2g064425 | 36.957 | 506 | 308 | 7 | 13 | 515 | 87 | 584 | 3.78e-102 | 319 |
| MS.gene88992.t1 | MTR_2g089120 | 34.623 | 491 | 304 | 6 | 10 | 495 | 67 | 545 | 7.42e-102 | 317 |
| MS.gene88992.t1 | MTR_8g057020 | 33.861 | 505 | 326 | 5 | 13 | 515 | 89 | 587 | 1.81e-93 | 296 |
| MS.gene88992.t1 | MTR_2g064425 | 35.178 | 506 | 302 | 8 | 13 | 515 | 87 | 569 | 8.59e-92 | 291 |
| MS.gene88992.t1 | MTR_2g065450 | 33.794 | 506 | 325 | 6 | 13 | 515 | 90 | 588 | 1.21e-91 | 291 |
| MS.gene88992.t1 | MTR_4g092020 | 33.398 | 515 | 330 | 6 | 5 | 515 | 64 | 569 | 5.65e-90 | 286 |
| MS.gene88992.t1 | MTR_7g057340 | 66.279 | 172 | 58 | 0 | 346 | 517 | 1 | 172 | 2.18e-84 | 259 |
| MS.gene88992.t1 | MTR_2g064425 | 44.343 | 327 | 173 | 5 | 13 | 337 | 87 | 406 | 1.19e-82 | 264 |
| MS.gene88992.t1 | MTR_4g092010 | 30.876 | 502 | 333 | 7 | 16 | 509 | 61 | 556 | 4.28e-81 | 263 |
| MS.gene88992.t1 | MTR_7g010710 | 31.633 | 490 | 328 | 4 | 29 | 514 | 66 | 552 | 4.88e-79 | 258 |
| MS.gene88992.t1 | MTR_7g057390 | 63.953 | 172 | 59 | 1 | 346 | 517 | 1 | 169 | 8.59e-78 | 241 |
| MS.gene88992.t1 | MTR_5g094530 | 56.621 | 219 | 57 | 4 | 127 | 342 | 1 | 184 | 1.28e-74 | 234 |
| MS.gene88992.t1 | MTR_2g010960 | 29.151 | 518 | 342 | 8 | 8 | 508 | 9 | 518 | 1.05e-72 | 240 |
| MS.gene88992.t1 | MTR_2g064425 | 41.590 | 327 | 167 | 6 | 13 | 337 | 87 | 391 | 1.91e-72 | 236 |
| MS.gene88992.t1 | MTR_6g064980 | 29.697 | 495 | 335 | 8 | 15 | 500 | 13 | 503 | 5.60e-69 | 230 |
| MS.gene88992.t1 | MTR_3g465090 | 29.774 | 487 | 335 | 6 | 15 | 495 | 13 | 498 | 9.87e-69 | 229 |
| MS.gene88992.t1 | MTR_3g063170 | 29.485 | 485 | 329 | 8 | 15 | 490 | 13 | 493 | 8.74e-68 | 227 |
| MS.gene88992.t1 | MTR_3g063120 | 28.717 | 491 | 339 | 8 | 29 | 511 | 1 | 488 | 1.98e-66 | 223 |
| MS.gene88992.t1 | MTR_3g052120 | 29.563 | 504 | 344 | 9 | 15 | 511 | 13 | 512 | 9.07e-66 | 221 |
| MS.gene88992.t1 | MTR_3g063140 | 28.980 | 490 | 335 | 8 | 15 | 495 | 13 | 498 | 6.12e-65 | 219 |
| MS.gene88992.t1 | MTR_7g050990 | 59.639 | 166 | 56 | 2 | 160 | 325 | 27 | 181 | 7.45e-57 | 204 |
| MS.gene88992.t1 | MTR_6g065040 | 29.008 | 393 | 268 | 6 | 106 | 490 | 2 | 391 | 1.24e-54 | 189 |
| MS.gene88992.t1 | MTR_3g015080 | 47.674 | 172 | 52 | 2 | 346 | 517 | 1 | 134 | 7.09e-47 | 160 |
| MS.gene88992.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 31 | 515 | 65 | 569 | 3.09e-38 | 148 |
| MS.gene88992.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 31 | 515 | 256 | 760 | 1.07e-37 | 148 |
| MS.gene88992.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 31 | 515 | 276 | 780 | 1.37e-37 | 147 |
| MS.gene88992.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 31 | 515 | 269 | 773 | 1.47e-37 | 147 |
| MS.gene88992.t1 | MTR_3g063160 | 31.655 | 278 | 185 | 5 | 15 | 289 | 13 | 288 | 5.17e-36 | 135 |
| MS.gene88992.t1 | MTR_2g064295 | 24.521 | 522 | 340 | 16 | 31 | 515 | 256 | 760 | 6.31e-36 | 142 |
| MS.gene88992.t1 | MTR_3g058160 | 25.323 | 541 | 333 | 16 | 31 | 515 | 276 | 801 | 6.41e-35 | 139 |
| MS.gene88992.t1 | MTR_2g012870 | 23.494 | 498 | 350 | 13 | 31 | 504 | 254 | 744 | 9.60e-31 | 127 |
| MS.gene88992.t1 | MTR_2g012900 | 24.561 | 456 | 299 | 15 | 29 | 447 | 252 | 699 | 1.05e-28 | 121 |
| MS.gene88992.t1 | MTR_7g011663 | 29.927 | 274 | 160 | 6 | 29 | 271 | 344 | 616 | 3.28e-24 | 107 |
| MS.gene88992.t1 | MTR_7g094970 | 27.273 | 275 | 168 | 6 | 29 | 274 | 206 | 477 | 7.19e-24 | 105 |
| MS.gene88992.t1 | MTR_5g030050 | 28.409 | 264 | 156 | 7 | 34 | 273 | 3 | 257 | 2.44e-21 | 95.1 |
| MS.gene88992.t1 | MTR_7g011770 | 28.669 | 293 | 180 | 7 | 29 | 293 | 240 | 531 | 2.72e-21 | 98.2 |
| MS.gene88992.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 114 | 218 | 2 | 111 | 2.14e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88992.t1 | AT5G23960 | 40.079 | 509 | 297 | 4 | 13 | 517 | 41 | 545 | 8.93e-142 | 419 |
| MS.gene88992.t1 | AT5G23960 | 40.039 | 512 | 295 | 6 | 13 | 517 | 41 | 547 | 1.59e-140 | 416 |
| MS.gene88992.t1 | AT1G70080 | 37.718 | 517 | 313 | 6 | 9 | 517 | 96 | 611 | 1.46e-125 | 380 |
| MS.gene88992.t1 | AT3G14490 | 38.160 | 511 | 306 | 5 | 13 | 517 | 95 | 601 | 2.71e-122 | 371 |
| MS.gene88992.t1 | AT3G14520 | 36.311 | 515 | 319 | 4 | 9 | 517 | 93 | 604 | 3.74e-120 | 366 |
| MS.gene88992.t1 | AT1G31950 | 36.053 | 527 | 321 | 5 | 4 | 517 | 84 | 607 | 1.50e-119 | 364 |
| MS.gene88992.t1 | AT1G31950 | 36.505 | 515 | 318 | 4 | 9 | 517 | 95 | 606 | 7.63e-119 | 362 |
| MS.gene88992.t1 | AT3G14540 | 36.770 | 514 | 318 | 3 | 9 | 517 | 90 | 601 | 4.30e-118 | 360 |
| MS.gene88992.t1 | AT3G29410 | 35.897 | 507 | 321 | 3 | 13 | 517 | 99 | 603 | 3.23e-114 | 350 |
| MS.gene88992.t1 | AT5G44630 | 36.293 | 518 | 314 | 7 | 9 | 515 | 43 | 555 | 6.56e-114 | 348 |
| MS.gene88992.t1 | AT3G29410 | 35.600 | 500 | 318 | 3 | 20 | 517 | 1 | 498 | 5.39e-113 | 344 |
| MS.gene88992.t1 | AT4G20200 | 35.521 | 518 | 320 | 8 | 9 | 517 | 92 | 604 | 8.33e-113 | 347 |
| MS.gene88992.t1 | AT4G20210 | 34.429 | 517 | 327 | 6 | 9 | 517 | 88 | 600 | 2.89e-111 | 343 |
| MS.gene88992.t1 | AT1G33750 | 34.570 | 512 | 330 | 3 | 8 | 517 | 95 | 603 | 1.30e-110 | 341 |
| MS.gene88992.t1 | AT4G13300 | 34.884 | 516 | 326 | 6 | 9 | 517 | 42 | 554 | 1.46e-109 | 337 |
| MS.gene88992.t1 | AT3G32030 | 33.792 | 509 | 331 | 4 | 13 | 517 | 98 | 604 | 7.34e-109 | 337 |
| MS.gene88992.t1 | AT3G29190 | 33.333 | 519 | 330 | 7 | 9 | 517 | 89 | 601 | 6.63e-106 | 329 |
| MS.gene88992.t1 | AT4G15870 | 34.542 | 524 | 319 | 9 | 3 | 517 | 90 | 598 | 1.86e-105 | 328 |
| MS.gene88992.t1 | AT4G13280 | 34.302 | 516 | 329 | 6 | 9 | 517 | 42 | 554 | 1.87e-104 | 324 |
| MS.gene88992.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 9 | 513 | 92 | 601 | 2.86e-103 | 322 |
| MS.gene88992.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 9 | 513 | 104 | 613 | 4.28e-103 | 322 |
| MS.gene88992.t1 | AT1G31950 | 37.104 | 442 | 262 | 5 | 4 | 432 | 84 | 522 | 1.86e-101 | 315 |
| MS.gene88992.t1 | AT3G14540 | 38.333 | 420 | 253 | 2 | 9 | 424 | 90 | 507 | 1.43e-100 | 312 |
| MS.gene88992.t1 | AT3G29110 | 34.893 | 513 | 326 | 7 | 9 | 515 | 85 | 595 | 5.84e-99 | 311 |
| MS.gene88992.t1 | AT2G23230 | 34.436 | 514 | 323 | 8 | 9 | 512 | 86 | 595 | 3.30e-98 | 309 |
| MS.gene88992.t1 | AT1G66020 | 33.204 | 515 | 336 | 5 | 9 | 517 | 86 | 598 | 8.82e-98 | 308 |
| MS.gene88992.t1 | AT2G23230 | 34.241 | 514 | 319 | 9 | 9 | 512 | 86 | 590 | 9.64e-96 | 303 |
| MS.gene88992.t1 | AT4G16730 | 32.264 | 530 | 337 | 9 | 3 | 517 | 17 | 539 | 1.41e-95 | 300 |
| MS.gene88992.t1 | AT1G48800 | 32.816 | 515 | 331 | 8 | 9 | 513 | 93 | 602 | 3.75e-94 | 298 |
| MS.gene88992.t1 | AT4G13280 | 33.333 | 516 | 304 | 8 | 9 | 517 | 42 | 524 | 1.61e-92 | 292 |
| MS.gene88992.t1 | AT4G16730 | 32.465 | 499 | 316 | 8 | 34 | 517 | 1 | 493 | 7.01e-92 | 289 |
| MS.gene88992.t1 | AT1G61680 | 32.596 | 497 | 323 | 4 | 15 | 505 | 77 | 567 | 4.35e-89 | 284 |
| MS.gene88992.t1 | AT4G16740 | 33.013 | 521 | 325 | 11 | 9 | 517 | 56 | 564 | 2.36e-86 | 277 |
| MS.gene88992.t1 | AT1G61680 | 32.193 | 497 | 318 | 5 | 15 | 505 | 77 | 560 | 1.23e-85 | 275 |
| MS.gene88992.t1 | AT2G24210 | 32.500 | 520 | 331 | 10 | 11 | 517 | 78 | 590 | 4.53e-85 | 275 |
| MS.gene88992.t1 | AT5G48110 | 37.026 | 343 | 211 | 5 | 176 | 517 | 1 | 339 | 2.54e-84 | 265 |
| MS.gene88992.t1 | AT1G48820 | 31.496 | 508 | 299 | 10 | 9 | 510 | 93 | 557 | 1.42e-81 | 265 |
| MS.gene88992.t1 | AT3G25810 | 31.115 | 511 | 329 | 9 | 24 | 517 | 93 | 597 | 4.12e-80 | 261 |
| MS.gene88992.t1 | AT3G25830 | 31.154 | 520 | 341 | 11 | 11 | 517 | 79 | 594 | 4.56e-79 | 259 |
| MS.gene88992.t1 | AT3G25820 | 31.154 | 520 | 341 | 11 | 11 | 517 | 79 | 594 | 4.56e-79 | 259 |
| MS.gene88992.t1 | AT1G66020 | 36.095 | 338 | 208 | 5 | 9 | 340 | 86 | 421 | 2.71e-67 | 223 |
| MS.gene88992.t1 | AT4G16740 | 35.920 | 348 | 205 | 6 | 5 | 342 | 52 | 391 | 1.57e-66 | 220 |
| MS.gene88992.t1 | AT3G25820 | 33.718 | 347 | 220 | 7 | 11 | 350 | 79 | 422 | 3.19e-60 | 205 |
| MS.gene88992.t1 | AT4G16740 | 36.364 | 297 | 172 | 5 | 5 | 291 | 52 | 341 | 5.17e-56 | 192 |
| MS.gene88992.t1 | AT4G16740 | 36.364 | 297 | 172 | 5 | 5 | 291 | 52 | 341 | 5.17e-56 | 192 |
| MS.gene88992.t1 | AT3G25820 | 34.843 | 287 | 179 | 5 | 11 | 291 | 79 | 363 | 1.09e-52 | 184 |
| MS.gene88992.t1 | AT3G25820 | 34.843 | 287 | 179 | 5 | 11 | 291 | 79 | 363 | 1.09e-52 | 184 |
| MS.gene88992.t1 | AT1G79460 | 25.095 | 526 | 335 | 20 | 31 | 517 | 274 | 779 | 2.41e-32 | 132 |
| MS.gene88992.t1 | AT1G61120 | 23.379 | 509 | 360 | 10 | 29 | 517 | 286 | 784 | 2.17e-27 | 117 |
| MS.gene88992.t1 | AT4G02780 | 29.119 | 261 | 155 | 6 | 29 | 261 | 329 | 587 | 7.37e-23 | 103 |
Find 0 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | + | 43207:17722-17741 | MS.gene88992:intergenic | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | - | 43207:15703-15722 | MS.gene88992:intron | 10.0% |
| !!! | CTTTTTTTATGTTTTTAATT+TGG | - | 43207:15333-15352 | MS.gene88992:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | - | 43207:16362-16381 | MS.gene88992:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | - | 43207:15047-15066 | MS.gene88992:CDS | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | + | 43207:16358-16377 | MS.gene88992:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | - | 43207:15465-15484 | MS.gene88992:CDS | 15.0% |
| !! | TTAACAACATTTAATTACAT+AGG | - | 43207:17680-17699 | MS.gene88992:intron | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | - | 43207:17216-17235 | MS.gene88992:CDS | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | + | 43207:16300-16319 | MS.gene88992:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | - | 43207:15865-15884 | MS.gene88992:intron | 15.0% |
| !!! | ATTTCATTTTAAACTTTGTA+TGG | - | 43207:17115-17134 | MS.gene88992:intron | 15.0% |
| !! | AAGAAAAATGTATCATCATT+AGG | - | 43207:17431-17450 | MS.gene88992:CDS | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | - | 43207:15715-15734 | MS.gene88992:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | + | 43207:15641-15660 | MS.gene88992:intergenic | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+CGG | - | 43207:17355-17374 | MS.gene88992:CDS | 20.0% |
| !! | TTGCAGAATTAATATTACAA+AGG | + | 43207:17597-17616 | MS.gene88992:intergenic | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | - | 43207:16856-16875 | MS.gene88992:CDS | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | + | 43207:16653-16672 | MS.gene88992:intergenic | 20.0% |
| !!! | CTTTTTACTAAAAGATTTAC+AGG | + | 43207:15505-15524 | MS.gene88992:intergenic | 20.0% |
| !!! | TATCTTGACATTTTAATTAG+TGG | - | 43207:17623-17642 | MS.gene88992:intron | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | - | 43207:16852-16871 | MS.gene88992:CDS | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | - | 43207:16365-16384 | MS.gene88992:intron | 20.0% |
| ! | AAACTTTGTATGGTTATCAA+AGG | - | 43207:17125-17144 | MS.gene88992:intron | 25.0% |
| ! | AACTTTGTATGGTTATCAAA+GGG | - | 43207:17126-17145 | MS.gene88992:intron | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | + | 43207:17102-17121 | MS.gene88992:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | + | 43207:16197-16216 | MS.gene88992:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | + | 43207:16524-16543 | MS.gene88992:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | - | 43207:16197-16216 | MS.gene88992:intron | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | - | 43207:15195-15214 | MS.gene88992:CDS | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | - | 43207:17511-17530 | MS.gene88992:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | + | 43207:16196-16215 | MS.gene88992:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | - | 43207:15364-15383 | MS.gene88992:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | + | 43207:15300-15319 | MS.gene88992:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | - | 43207:15164-15183 | MS.gene88992:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | - | 43207:15436-15455 | MS.gene88992:CDS | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | + | 43207:17277-17296 | MS.gene88992:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | - | 43207:16570-16589 | MS.gene88992:intron | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | - | 43207:16823-16842 | MS.gene88992:intron | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | + | 43207:17002-17021 | MS.gene88992:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | + | 43207:17001-17020 | MS.gene88992:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | - | 43207:16855-16874 | MS.gene88992:CDS | 25.0% |
| AAAAGAAAATTGACAACGCT+TGG | - | 43207:18209-18228 | MS.gene88992:CDS | 30.0% | |
| AATTTACCCATCTTCAATCT+TGG | - | 43207:16735-16754 | MS.gene88992:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | + | 43207:16467-16486 | MS.gene88992:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | + | 43207:15618-15637 | MS.gene88992:intergenic | 30.0% | |
| CACATATCAACAATATCAAG+TGG | - | 43207:17838-17857 | MS.gene88992:intron | 30.0% | |
| GAACAAGAAATGAAGAAAGA+AGG | - | 43207:16956-16975 | MS.gene88992:CDS | 30.0% | |
| GAGGGAATATGATTTGAATA+GGG | - | 43207:18165-18184 | MS.gene88992:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | - | 43207:16008-16027 | MS.gene88992:intron | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | - | 43207:18147-18166 | MS.gene88992:CDS | 30.0% | |
| TAACTATATACCAACAACAG+AGG | - | 43207:17807-17826 | MS.gene88992:intron | 30.0% | |
| TGAGGGAATATGATTTGAAT+AGG | - | 43207:18164-18183 | MS.gene88992:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | - | 43207:16014-16033 | MS.gene88992:intron | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | - | 43207:16368-16387 | MS.gene88992:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | + | 43207:16482-16501 | MS.gene88992:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | - | 43207:17251-17270 | MS.gene88992:CDS | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | - | 43207:15123-15142 | MS.gene88992:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | - | 43207:15435-15454 | MS.gene88992:CDS | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | - | 43207:16916-16935 | MS.gene88992:CDS | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | + | 43207:16251-16270 | MS.gene88992:intergenic | 30.0% |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | + | 43207:18197-18216 | MS.gene88992:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | + | 43207:16483-16502 | MS.gene88992:intergenic | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | - | 43207:16581-16600 | MS.gene88992:intron | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | + | 43207:18210-18229 | MS.gene88992:intergenic | 30.0% |
| !! | CTCTTACTTCTTTTAAGAAG+GGG | + | 43207:17000-17019 | MS.gene88992:intergenic | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | + | 43207:15757-15776 | MS.gene88992:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | + | 43207:15106-15125 | MS.gene88992:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | - | 43207:16435-16454 | MS.gene88992:CDS | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | + | 43207:15105-15124 | MS.gene88992:intergenic | 30.0% |
| !!! | TATCCACGGTTTTATTAACT+CGG | - | 43207:17369-17388 | MS.gene88992:CDS | 30.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | - | 43207:18112-18131 | MS.gene88992:intron | 35.0% | |
| AAAGATTTACAGGCTAACAG+TGG | + | 43207:15495-15514 | MS.gene88992:intergenic | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | - | 43207:17768-17787 | MS.gene88992:intron | 35.0% | |
| ACACACGTAAGAATAGGTAA+TGG | + | 43207:18274-18293 | MS.gene88992:intergenic | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | - | 43207:17877-17896 | MS.gene88992:intron | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | - | 43207:15906-15925 | MS.gene88992:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | - | 43207:16246-16265 | MS.gene88992:intron | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | - | 43207:15936-15955 | MS.gene88992:intron | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | - | 43207:18225-18244 | MS.gene88992:CDS | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | - | 43207:18146-18165 | MS.gene88992:CDS | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | + | 43207:17531-17550 | MS.gene88992:intergenic | 35.0% | |
| GACAAAAGACATCTTTGACT+GGG | - | 43207:17909-17928 | MS.gene88992:intron | 35.0% | |
| GATGACACATATGATGCATA+TGG | - | 43207:16538-16557 | MS.gene88992:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | + | 43207:16905-16924 | MS.gene88992:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | - | 43207:17876-17895 | MS.gene88992:intron | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | + | 43207:16744-16763 | MS.gene88992:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | - | 43207:16871-16890 | MS.gene88992:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | - | 43207:17135-17154 | MS.gene88992:intron | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | + | 43207:16745-16764 | MS.gene88992:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | + | 43207:16481-16500 | MS.gene88992:intergenic | 35.0% | |
| TTGAGAACACACGTAAGAAT+AGG | + | 43207:18280-18299 | MS.gene88992:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | + | 43207:16090-16109 | MS.gene88992:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | - | 43207:16020-16039 | MS.gene88992:intron | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | + | 43207:16245-16264 | MS.gene88992:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | - | 43207:16691-16710 | MS.gene88992:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | - | 43207:15122-15141 | MS.gene88992:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | + | 43207:17946-17965 | MS.gene88992:intergenic | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | - | 43207:16206-16225 | MS.gene88992:intron | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | + | 43207:17263-17282 | MS.gene88992:intergenic | 35.0% |
| !! | ATAGGTAATGGAACTTCAGT+TGG | + | 43207:18262-18281 | MS.gene88992:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | - | 43207:15244-15263 | MS.gene88992:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | - | 43207:16372-16391 | MS.gene88992:intron | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | + | 43207:15758-15777 | MS.gene88992:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | - | 43207:15245-15264 | MS.gene88992:CDS | 35.0% |
| !! | TTCTTTTAAGAAGGGGTCAA+GGG | + | 43207:16993-17012 | MS.gene88992:intergenic | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | - | 43207:16434-16453 | MS.gene88992:CDS | 35.0% |
| AACATTGGTCAGAGATGTTG+AGG | - | 43207:15951-15970 | MS.gene88992:intron | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | - | 43207:15952-15971 | MS.gene88992:intron | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | + | 43207:15998-16017 | MS.gene88992:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | + | 43207:16421-16440 | MS.gene88992:intergenic | 40.0% | |
| AGGACATGTTTCTTCGTACT+TGG | - | 43207:18132-18151 | MS.gene88992:CDS | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | + | 43207:15242-15261 | MS.gene88992:intergenic | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | + | 43207:17794-17813 | MS.gene88992:intergenic | 40.0% | |
| CGACAAAAGACATCTTTGAC+TGG | - | 43207:17908-17927 | MS.gene88992:intron | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | - | 43207:15086-15105 | MS.gene88992:CDS | 40.0% | |
| GAACCGAGTTAATAAAACCG+TGG | + | 43207:17375-17394 | MS.gene88992:intergenic | 40.0% | |
| GATAACTACACACACTCTGA+CGG | - | 43207:18337-18356 | MS.gene88992:CDS | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | + | 43207:16175-16194 | MS.gene88992:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | - | 43207:15987-16006 | MS.gene88992:intron | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | - | 43207:16874-16893 | MS.gene88992:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | - | 43207:16883-16902 | MS.gene88992:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | - | 43207:17963-17982 | MS.gene88992:intron | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | + | 43207:16080-16099 | MS.gene88992:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | - | 43207:17871-17890 | MS.gene88992:intron | 40.0% | |
| TTTGCCGCAGTATTCATATC+AGG | + | 43207:15027-15046 | MS.gene88992:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | - | 43207:15575-15594 | MS.gene88992:CDS | 40.0% |
| !! | CAATCTCTCGCGTTTTATTG+AGG | - | 43207:18297-18316 | MS.gene88992:CDS | 40.0% |
| !! | CTTCTTTTAAGAAGGGGTCA+AGG | + | 43207:16994-17013 | MS.gene88992:intergenic | 40.0% |
| AACCAATTCAAGGACGAGCA+AGG | - | 43207:15916-15935 | MS.gene88992:intron | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | + | 43207:17867-17886 | MS.gene88992:intergenic | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | - | 43207:16476-16495 | MS.gene88992:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | - | 43207:17852-17871 | MS.gene88992:intron | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | - | 43207:17956-17975 | MS.gene88992:intron | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | - | 43207:16134-16153 | MS.gene88992:intron | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | - | 43207:15279-15298 | MS.gene88992:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | - | 43207:17962-17981 | MS.gene88992:intron | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | - | 43207:17776-17795 | MS.gene88992:intron | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | - | 43207:15994-16013 | MS.gene88992:intron | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | - | 43207:16239-16258 | MS.gene88992:intron | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | - | 43207:17984-18003 | MS.gene88992:intron | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | + | 43207:17868-17887 | MS.gene88992:intergenic | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | + | 43207:16079-16098 | MS.gene88992:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | + | 43207:17820-17839 | MS.gene88992:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | + | 43207:17774-17793 | MS.gene88992:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | + | 43207:15921-15940 | MS.gene88992:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | + | 43207:16147-16166 | MS.gene88992:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | - | 43207:16378-16397 | MS.gene88992:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | - | 43207:15253-15272 | MS.gene88992:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | - | 43207:15261-15280 | MS.gene88992:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | - | 43207:15555-15574 | MS.gene88992:CDS | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | + | 43207:16076-16095 | MS.gene88992:intergenic | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | - | 43207:16127-16146 | MS.gene88992:intron | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | - | 43207:16050-16069 | MS.gene88992:intron | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | - | 43207:16033-16052 | MS.gene88992:intron | 50.0% |
| AGGACTCAATCGGGTGGCCA+TGG | + | 43207:16070-16089 | MS.gene88992:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | + | 43207:16062-16081 | MS.gene88992:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43207 | gene | 15021 | 18411 | 15021 | ID=MS.gene88992 |
| 43207 | mRNA | 15021 | 18411 | 15021 | ID=MS.gene88992.t1;Parent=MS.gene88992 |
| 43207 | exon | 18132 | 18411 | 18132 | ID=MS.gene88992.t1.exon1;Parent=MS.gene88992.t1 |
| 43207 | CDS | 18132 | 18411 | 18132 | ID=cds.MS.gene88992.t1;Parent=MS.gene88992.t1 |
| 43207 | exon | 17152 | 17524 | 17152 | ID=MS.gene88992.t1.exon2;Parent=MS.gene88992.t1 |
| 43207 | CDS | 17152 | 17524 | 17152 | ID=cds.MS.gene88992.t1;Parent=MS.gene88992.t1 |
| 43207 | exon | 16830 | 17048 | 16830 | ID=MS.gene88992.t1.exon3;Parent=MS.gene88992.t1 |
| 43207 | CDS | 16830 | 17048 | 16830 | ID=cds.MS.gene88992.t1;Parent=MS.gene88992.t1 |
| 43207 | exon | 16420 | 16558 | 16420 | ID=MS.gene88992.t1.exon4;Parent=MS.gene88992.t1 |
| 43207 | CDS | 16420 | 16558 | 16420 | ID=cds.MS.gene88992.t1;Parent=MS.gene88992.t1 |
| 43207 | exon | 15427 | 15675 | 15427 | ID=MS.gene88992.t1.exon5;Parent=MS.gene88992.t1 |
| 43207 | CDS | 15427 | 15675 | 15427 | ID=cds.MS.gene88992.t1;Parent=MS.gene88992.t1 |
| 43207 | exon | 15021 | 15314 | 15021 | ID=MS.gene88992.t1.exon6;Parent=MS.gene88992.t1 |
| 43207 | CDS | 15021 | 15314 | 15021 | ID=cds.MS.gene88992.t1;Parent=MS.gene88992.t1 |
| Gene Sequence |
| Protein sequence |
