Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91417.t1 | RHN82068.1 | 92.1 | 239 | 19 | 0 | 1 | 239 | 7 | 245 | 2.20E-114 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91417.t1 | Q9M651 | 72.0 | 236 | 64 | 1 | 5 | 238 | 5 | 240 | 6.0e-89 | 329.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91417.t1 | G7IE29 | 92.1 | 239 | 19 | 0 | 1 | 239 | 1 | 239 | 1.6e-114 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene91417 | 0.806836 | 6.78E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene91417 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene91417 | 0.808801 | 2.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064353 | MS.gene91417 | PPI |
| MS.gene035825 | MS.gene91417 | PPI |
| MS.gene73093 | MS.gene91417 | PPI |
| MS.gene043643 | MS.gene91417 | PPI |
| MS.gene035826 | MS.gene91417 | PPI |
| MS.gene064351 | MS.gene91417 | PPI |
| MS.gene035828 | MS.gene91417 | PPI |
| MS.gene99872 | MS.gene91417 | PPI |
| MS.gene043595 | MS.gene91417 | PPI |
| MS.gene043645 | MS.gene91417 | PPI |
| MS.gene043593 | MS.gene91417 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91417.t1 | MTR_1g105040 | 94.747 | 533 | 28 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1008 |
| MS.gene91417.t1 | MTR_1g072250 | 67.932 | 527 | 167 | 2 | 6 | 532 | 9 | 533 | 0.0 | 702 |
| MS.gene91417.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 217 | 485 | 27 | 295 | 1.66e-22 | 100 |
| MS.gene91417.t1 | MTR_5g035590 | 26.552 | 290 | 202 | 3 | 219 | 498 | 1 | 289 | 4.81e-20 | 93.2 |
| MS.gene91417.t1 | MTR_5g035590 | 26.230 | 305 | 212 | 5 | 181 | 481 | 52 | 347 | 4.74e-18 | 87.0 |
| MS.gene91417.t1 | MTR_5g035590 | 25.940 | 266 | 165 | 4 | 208 | 441 | 157 | 422 | 2.74e-12 | 69.3 |
| MS.gene91417.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 217 | 485 | 204 | 472 | 2.32e-22 | 101 |
| MS.gene91417.t1 | MTR_5g035590 | 26.441 | 295 | 206 | 3 | 214 | 498 | 173 | 466 | 7.99e-21 | 96.7 |
| MS.gene91417.t1 | MTR_5g035590 | 26.230 | 305 | 212 | 5 | 181 | 481 | 229 | 524 | 5.44e-18 | 87.8 |
| MS.gene91417.t1 | MTR_5g035590 | 26.068 | 234 | 143 | 2 | 214 | 445 | 398 | 603 | 2.33e-12 | 70.1 |
| MS.gene91417.t1 | MTR_3g102500 | 37.719 | 114 | 64 | 4 | 6 | 116 | 26 | 135 | 1.24e-14 | 72.0 |
| MS.gene91417.t1 | MTR_1g018710 | 34.118 | 85 | 54 | 1 | 14 | 98 | 28 | 110 | 3.72e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91417.t1 | AT5G19320 | 71.084 | 498 | 141 | 2 | 5 | 499 | 5 | 502 | 0.0 | 665 |
| MS.gene91417.t1 | AT5G19320 | 71.084 | 498 | 141 | 2 | 5 | 499 | 5 | 502 | 0.0 | 665 |
| MS.gene91417.t1 | AT3G63130 | 63.783 | 497 | 174 | 2 | 6 | 502 | 9 | 499 | 0.0 | 631 |
| MS.gene91417.t1 | AT3G63130 | 63.783 | 497 | 174 | 2 | 6 | 502 | 9 | 499 | 0.0 | 631 |
| MS.gene91417.t1 | AT3G06000 | 50.543 | 184 | 78 | 2 | 319 | 502 | 16 | 186 | 4.55e-50 | 171 |
| MS.gene91417.t1 | AT1G10510 | 29.197 | 274 | 194 | 0 | 217 | 490 | 203 | 476 | 2.97e-26 | 113 |
| MS.gene91417.t1 | AT1G10510 | 26.603 | 312 | 194 | 5 | 202 | 481 | 215 | 523 | 1.13e-20 | 96.3 |
| MS.gene91417.t1 | AT1G10510 | 29.341 | 167 | 117 | 1 | 214 | 379 | 397 | 563 | 2.95e-11 | 66.6 |
| MS.gene91417.t1 | AT5G43070 | 35.955 | 89 | 55 | 1 | 10 | 98 | 40 | 126 | 1.95e-12 | 65.9 |
| MS.gene91417.t1 | AT1G47200 | 37.079 | 89 | 54 | 1 | 10 | 98 | 56 | 142 | 2.49e-12 | 65.9 |
Find 124 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGCAGCTTTGTGATTTC+AGG | 0.102371 | 1.3:-71727850 | None:intergenic |
| AACTACAAGGTTCTTCATTT+TGG | 0.114174 | 1.3:-71728719 | None:intergenic |
| AGAAGGCCTTTCACAATTAA+AGG | 0.166905 | 1.3:+71728444 | MS.gene91417:CDS |
| CCTCCTAGAACTTCTTAAAA+TGG | 0.195867 | 1.3:+71727421 | MS.gene91417:CDS |
| GTTGCCTTATCTGATGCTTT+AGG | 0.238271 | 1.3:+71728085 | MS.gene91417:CDS |
| ACATCAAGTGCTTCTGCTTC+TGG | 0.239334 | 1.3:-71727725 | None:intergenic |
| CTTCTAAAGCCTTACTTATC+TGG | 0.252450 | 1.3:-71728426 | None:intergenic |
| TGCTTCAGCAACAGAAGTTT+TGG | 0.256040 | 1.3:+71727611 | MS.gene91417:CDS |
| TGAAGGTATTAAAGAGTTAA+TGG | 0.272016 | 1.3:+71728582 | MS.gene91417:CDS |
| TTGCCTTATCTGATGCTTTA+GGG | 0.286750 | 1.3:+71728086 | MS.gene91417:CDS |
| CAGTCATATTATTATGAAAA+TGG | 0.290406 | 1.3:-71727964 | None:intergenic |
| CTCCTTCGTCTTCCAAGTTC+AGG | 0.291124 | 1.3:-71728228 | None:intergenic |
| CTGGCTCTTCCTCATAATAT+TGG | 0.309459 | 1.3:-71727346 | None:intergenic |
| AACCTTTCTGACAATGCTTT+AGG | 0.321520 | 1.3:+71727797 | MS.gene91417:CDS |
| TCTTATGAATGATGGAATTT+CGG | 0.329307 | 1.3:+71727883 | MS.gene91417:CDS |
| GGCCGTTCTCAATCAAATTA+TGG | 0.332398 | 1.3:+71727168 | MS.gene91417:CDS |
| GAGAAAGGTGTTAGAGCATT+TGG | 0.354722 | 1.3:+71727821 | MS.gene91417:CDS |
| AGGCTGAAGAAAATGCTAAA+AGG | 0.365052 | 1.3:+71727294 | MS.gene91417:CDS |
| TGTGAAGCGTTCTTCTTCCT+TGG | 0.371026 | 1.3:+71728018 | MS.gene91417:CDS |
| GAGGAGCTTACTGCACTCTT+TGG | 0.371741 | 1.3:-71727402 | None:intergenic |
| GCAAATCAAGCTTCCTCAAA+TGG | 0.375174 | 1.3:-71728117 | None:intergenic |
| CTCTCTTAACTCTGCATGCC+TGG | 0.379225 | 1.3:-71728191 | None:intergenic |
| TGCTATAGCTAATGCTCTTA+AGG | 0.382686 | 1.3:+71728255 | MS.gene91417:CDS |
| CACTCATCTCGAGAACTTCA+AGG | 0.389478 | 1.3:-71728291 | None:intergenic |
| CACCTAAAGCATTGTCAGAA+AGG | 0.404264 | 1.3:-71727799 | None:intergenic |
| GATTTGCGAGACAACATGTT+AGG | 0.409608 | 1.3:+71728133 | MS.gene91417:CDS |
| TAAAACCTTGGACCTGAAAC+AGG | 0.414863 | 1.3:+71727274 | MS.gene91417:CDS |
| CAGATAAGTAAGGCTTTAGA+AGG | 0.414903 | 1.3:+71728427 | MS.gene91417:CDS |
| ATATTCTCGGCTGCTCTAGA+AGG | 0.421463 | 1.3:+71727755 | MS.gene91417:CDS |
| CTCCTAGAACTTCTTAAAAT+GGG | 0.426591 | 1.3:+71727422 | MS.gene91417:CDS |
| TTCAGCCTGTTTCAGGTCCA+AGG | 0.427542 | 1.3:-71727279 | None:intergenic |
| ACAGGTCTACTTCTTTCAAC+TGG | 0.428841 | 1.3:-71727682 | None:intergenic |
| GAATTACCCGGCTCCTTCAA+TGG | 0.430139 | 1.3:-71727575 | None:intergenic |
| TTCTTTCAACTGGTCCTTGA+GGG | 0.434126 | 1.3:-71727672 | None:intergenic |
| TGGAGCTGAATTTGCAGAAC+AGG | 0.435691 | 1.3:+71727147 | MS.gene91417:CDS |
| ATACCTGAGCTTCCTGAACT+TGG | 0.437940 | 1.3:+71728216 | MS.gene91417:CDS |
| CAAGAAACTGCTTAGCTGCT+AGG | 0.452521 | 1.3:-71728357 | None:intergenic |
| TCTTTGACACCGTTCCTACT+AGG | 0.454987 | 1.3:-71727446 | None:intergenic |
| TTCTTAAAATGGGTCCTAGT+AGG | 0.457891 | 1.3:+71727432 | MS.gene91417:CDS |
| GAAGCGTTCTTCTTCCTTGG+AGG | 0.458045 | 1.3:+71728021 | MS.gene91417:CDS |
| GACAATGCTTTAGGTGAGAA+AGG | 0.459821 | 1.3:+71727806 | MS.gene91417:CDS |
| GAGCTTTATCTTATGAATGA+TGG | 0.460582 | 1.3:+71727875 | MS.gene91417:CDS |
| AATAATATGACTGGAGATGA+AGG | 0.462940 | 1.3:+71727974 | MS.gene91417:CDS |
| TCTGTGTTTGATATATCTAA+AGG | 0.465425 | 1.3:+71727506 | MS.gene91417:CDS |
| CGTTGTTCCTCCACAAGGAT+AGG | 0.465776 | 1.3:+71728049 | MS.gene91417:CDS |
| TCTAATGGACCAAGCTTGTC+CGG | 0.467253 | 1.3:-71728622 | None:intergenic |
| CAAATCAAGCTTCCTCAAAT+GGG | 0.468726 | 1.3:-71728116 | None:intergenic |
| CAGAGACGGAGCTCGACAAT+TGG | 0.473910 | 1.3:+71728495 | MS.gene91417:CDS |
| TTCCTCATAATATTGGTTTG+CGG | 0.475757 | 1.3:-71727339 | None:intergenic |
| TGCACTCTTTGGCATAAAGC+TGG | 0.478098 | 1.3:-71727391 | None:intergenic |
| CTGTGTTTGATATATCTAAA+GGG | 0.478295 | 1.3:+71727507 | MS.gene91417:CDS |
| TCAATGGAATCAAAAGTTCA+TGG | 0.481172 | 1.3:-71727559 | None:intergenic |
| CACTCAGAAGTATAAAACCT+TGG | 0.482492 | 1.3:+71727262 | MS.gene91417:CDS |
| TAGGGAATTGCACCCATTTG+AGG | 0.482728 | 1.3:+71728104 | MS.gene91417:CDS |
| CAATTGTCGAGCTCCGTCTC+TGG | 0.485531 | 1.3:-71728494 | None:intergenic |
| CCTGAAATCACAAAGCTGCT+TGG | 0.485842 | 1.3:+71727850 | MS.gene91417:CDS |
| TGATATATCTAAAGGGCAAA+GGG | 0.485851 | 1.3:+71727514 | MS.gene91417:CDS |
| CTCTGAGTAAAGCTCTTGCC+AGG | 0.488373 | 1.3:+71728173 | MS.gene91417:CDS |
| TGATGTCATGAGGATATTCT+CGG | 0.490782 | 1.3:+71727742 | MS.gene91417:CDS |
| GGGTGGTGTGGAGGATGCAC+TGG | 0.497583 | 1.3:+71728693 | MS.gene91417:CDS |
| CGATTTCCTTTAATTGTGAA+AGG | 0.500867 | 1.3:-71728450 | None:intergenic |
| GCAGAACCTCCATCACCATC+TGG | 0.502480 | 1.3:-71727365 | None:intergenic |
| CATGTTAGGTGTAGAGGGTG+GGG | 0.504439 | 1.3:+71728147 | MS.gene91417:CDS |
| GAGAATGAACTCAAAGATGA+AGG | 0.512971 | 1.3:+71728397 | MS.gene91417:CDS |
| TTGATTCCATTGAAGGAGCC+GGG | 0.514701 | 1.3:+71727569 | MS.gene91417:CDS |
| TTTGAACGTCTGGACATTGA+CGG | 0.515393 | 1.3:+71728544 | MS.gene91417:CDS |
| AAATTGATTTCGTAGTAAGA+TGG | 0.516620 | 1.3:-71727238 | None:intergenic |
| GAAATCACAAAGCTGCTTGG+AGG | 0.519662 | 1.3:+71727853 | MS.gene91417:CDS |
| TTTGATTCCATTGAAGGAGC+CGG | 0.520953 | 1.3:+71727568 | MS.gene91417:CDS |
| CACCGCAAACCAATATTATG+AGG | 0.522671 | 1.3:+71727337 | MS.gene91417:CDS |
| CTTCCAAGTTCAGGAAGCTC+AGG | 0.525920 | 1.3:-71728219 | None:intergenic |
| ATTCTCAGAGAGGTTCAACT+TGG | 0.528765 | 1.3:-71728380 | None:intergenic |
| CTTCTTTCAACTGGTCCTTG+AGG | 0.528830 | 1.3:-71727673 | None:intergenic |
| GGCTCTCACTGTGTTGCAGA+AGG | 0.536655 | 1.3:+71728516 | MS.gene91417:CDS |
| TGCTAAAAGGATTGAGGACA+AGG | 0.539008 | 1.3:+71727307 | MS.gene91417:CDS |
| TCCACAAGGATAGGCGATGA+AGG | 0.540262 | 1.3:+71728058 | MS.gene91417:CDS |
| ATCTTATGAAGAGGGTGGTG+TGG | 0.541655 | 1.3:+71728681 | MS.gene91417:CDS |
| GCTAGGCAGTTTGCTATAGC+AGG | 0.542860 | 1.3:-71728340 | None:intergenic |
| GGCCATAATTTGATTGAGAA+CGG | 0.546531 | 1.3:-71727170 | None:intergenic |
| TTCCAGCAATAAAATCTGAC+AGG | 0.547277 | 1.3:-71727700 | None:intergenic |
| TTGATATATCTAAAGGGCAA+AGG | 0.548049 | 1.3:+71727513 | MS.gene91417:CDS |
| GAGGAAGAGCCAGATGGTGA+TGG | 0.549187 | 1.3:+71727356 | MS.gene91417:CDS |
| TTAGATGAAAATGACCCTGA+TGG | 0.550836 | 1.3:+71728640 | MS.gene91417:CDS |
| GCCTTCATCGCCTATCCTTG+TGG | 0.550966 | 1.3:-71728059 | None:intergenic |
| TGATTTCGTAGTAAGATGGT+TGG | 0.553384 | 1.3:-71727234 | None:intergenic |
| AGAAAATGCTAAAAGGATTG+AGG | 0.553446 | 1.3:+71727301 | MS.gene91417:CDS |
| GGCTTTCATTGAAGCAGAGG+AGG | 0.556518 | 1.3:+71727535 | MS.gene91417:CDS |
| ACTTTGAGCTTCTCTGTGGA+AGG | 0.557077 | 1.3:-71727938 | None:intergenic |
| GGAAACGTCATTTCTGATGA+AGG | 0.558076 | 1.3:+71728565 | MS.gene91417:CDS |
| ACATGTTAGGTGTAGAGGGT+GGG | 0.562106 | 1.3:+71728146 | MS.gene91417:CDS |
| AGGTGCCATCCAGATAAGTA+AGG | 0.569786 | 1.3:+71728417 | MS.gene91417:CDS |
| AGACAACATGTTAGGTGTAG+AGG | 0.571641 | 1.3:+71728141 | MS.gene91417:CDS |
| CAATGGAATCAAAAGTTCAT+GGG | 0.571652 | 1.3:-71727558 | None:intergenic |
| ATTCCCTAAAGCATCAGATA+AGG | 0.572628 | 1.3:-71728089 | None:intergenic |
| CTACAATTCAATCAACTACA+AGG | 0.572637 | 1.3:-71728732 | None:intergenic |
| GACGATTCTCGTATCCCTCA+AGG | 0.582435 | 1.3:+71727658 | MS.gene91417:CDS |
| CTTTGAGTTCATTCTCAGAG+AGG | 0.583247 | 1.3:-71728390 | None:intergenic |
| AAGGGCTTTCATTGAAGCAG+AGG | 0.585758 | 1.3:+71727532 | MS.gene91417:CDS |
| CTCATAATATTGGTTTGCGG+TGG | 0.591749 | 1.3:-71727336 | None:intergenic |
| AACATGTTAGGTGTAGAGGG+TGG | 0.597375 | 1.3:+71728145 | MS.gene91417:CDS |
| TAAAGCCTTACTTATCTGGA+TGG | 0.601456 | 1.3:-71728422 | None:intergenic |
| ATCTCGAGAACTTCAAGGCG+AGG | 0.604342 | 1.3:-71728286 | None:intergenic |
| TGCAACAGAATAACCAGAGA+CGG | 0.607097 | 1.3:+71728481 | MS.gene91417:CDS |
| GAACACTAGACAGACGCTTG+TGG | 0.616790 | 1.3:+71727202 | MS.gene91417:CDS |
| GAAGAGCCAGATGGTGATGG+AGG | 0.618057 | 1.3:+71727359 | MS.gene91417:CDS |
| GACAACATGTTAGGTGTAGA+GGG | 0.619666 | 1.3:+71728142 | MS.gene91417:CDS |
| CAGAAGCACTTGATGTCATG+AGG | 0.625520 | 1.3:+71727732 | MS.gene91417:CDS |
| TTCATCGCCTATCCTTGTGG+AGG | 0.637124 | 1.3:-71728056 | None:intergenic |
| TTATGAAGAGGGTGGTGTGG+AGG | 0.638677 | 1.3:+71728684 | MS.gene91417:CDS |
| CTTGAAGTTCTCGAGATGAG+TGG | 0.640302 | 1.3:+71728292 | MS.gene91417:CDS |
| GTCTGTCTAGTGTTCTGACT+AGG | 0.640859 | 1.3:-71727194 | None:intergenic |
| GAGAACTTTGAGCTTCTCTG+TGG | 0.641453 | 1.3:-71727942 | None:intergenic |
| AAAATGGGTCCTAGTAGGAA+CGG | 0.642065 | 1.3:+71727437 | MS.gene91417:CDS |
| TGTCTAGTGTTCTGACTAGG+AGG | 0.651566 | 1.3:-71727191 | None:intergenic |
| GATGAAGAATCTTATGAAGA+GGG | 0.654330 | 1.3:+71728673 | MS.gene91417:CDS |
| ATATCAAACACAGATTCAAG+AGG | 0.662676 | 1.3:-71727497 | None:intergenic |
| GGAACAACGAAAATCCTCCA+AGG | 0.665861 | 1.3:-71728035 | None:intergenic |
| TATTATGAGGAAGAGCCAGA+TGG | 0.666367 | 1.3:+71727350 | MS.gene91417:CDS |
| TATCAAACACAGATTCAAGA+GGG | 0.674818 | 1.3:-71727496 | None:intergenic |
| AGGAGCACGTGCTATAGCTG+AGG | 0.676404 | 1.3:+71727994 | MS.gene91417:CDS |
| ACAAGGATAGGCGATGAAGG+CGG | 0.690357 | 1.3:+71728061 | MS.gene91417:CDS |
| TGATGAAGAATCTTATGAAG+AGG | 0.698966 | 1.3:+71728672 | MS.gene91417:CDS |
| GAAGAATCTTATGAAGAGGG+TGG | 0.700350 | 1.3:+71728676 | MS.gene91417:CDS |
| TTCCTGAACTTGGAAGACGA+AGG | 0.704063 | 1.3:+71728226 | MS.gene91417:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAGTCATATTATTATGAAAA+TGG | - | chr1.3:71727967-71727986 | None:intergenic | 20.0% |
| !!! | CATTTTCATAATAATATGAC+TGG | + | chr1.3:71727965-71727984 | MS.gene91417:CDS | 20.0% |
| ! | CTGTGTTTGATATATCTAAA+GGG | + | chr1.3:71727507-71727526 | MS.gene91417:CDS | 25.0% |
| ! | GGTTATATTTGAAAAATCTC+CGG | + | chr1.3:71728603-71728622 | MS.gene91417:CDS | 25.0% |
| ! | TCTGTGTTTGATATATCTAA+AGG | + | chr1.3:71727506-71727525 | MS.gene91417:CDS | 25.0% |
| !! | AAATTGATTTCGTAGTAAGA+TGG | - | chr1.3:71727241-71727260 | None:intergenic | 25.0% |
| !! | TCTTATGAATGATGGAATTT+CGG | + | chr1.3:71727883-71727902 | MS.gene91417:CDS | 25.0% |
| !!! | ATTTTAGTGAAAGAATTACC+CGG | - | chr1.3:71727590-71727609 | None:intergenic | 25.0% |
| !!! | TGAAGGTATTAAAGAGTTAA+TGG | + | chr1.3:71728582-71728601 | MS.gene91417:CDS | 25.0% |
| AATAATATGACTGGAGATGA+AGG | + | chr1.3:71727974-71727993 | MS.gene91417:CDS | 30.0% | |
| AGAAAATGCTAAAAGGATTG+AGG | + | chr1.3:71727301-71727320 | MS.gene91417:CDS | 30.0% | |
| ATATCAAACACAGATTCAAG+AGG | - | chr1.3:71727500-71727519 | None:intergenic | 30.0% | |
| CAATGGAATCAAAAGTTCAT+GGG | - | chr1.3:71727561-71727580 | None:intergenic | 30.0% | |
| CGATTTCCTTTAATTGTGAA+AGG | - | chr1.3:71728453-71728472 | None:intergenic | 30.0% | |
| CTCCTAGAACTTCTTAAAAT+GGG | + | chr1.3:71727422-71727441 | MS.gene91417:CDS | 30.0% | |
| GATGAAGAATCTTATGAAGA+GGG | + | chr1.3:71728673-71728692 | MS.gene91417:CDS | 30.0% | |
| TATCAAACACAGATTCAAGA+GGG | - | chr1.3:71727499-71727518 | None:intergenic | 30.0% | |
| TCAATGGAATCAAAAGTTCA+TGG | - | chr1.3:71727562-71727581 | None:intergenic | 30.0% | |
| TGATATATCTAAAGGGCAAA+GGG | + | chr1.3:71727514-71727533 | MS.gene91417:CDS | 30.0% | |
| TGATGAAGAATCTTATGAAG+AGG | + | chr1.3:71728672-71728691 | MS.gene91417:CDS | 30.0% | |
| TTGATATATCTAAAGGGCAA+AGG | + | chr1.3:71727513-71727532 | MS.gene91417:CDS | 30.0% | |
| ! | AACTACAAGGTTCTTCATTT+TGG | - | chr1.3:71728722-71728741 | None:intergenic | 30.0% |
| ! | GAGCTTTATCTTATGAATGA+TGG | + | chr1.3:71727875-71727894 | MS.gene91417:CDS | 30.0% |
| !! | TGAACTTTTGATTCCATTGA+AGG | + | chr1.3:71727562-71727581 | MS.gene91417:CDS | 30.0% |
| !! | TTCCTCATAATATTGGTTTG+CGG | - | chr1.3:71727342-71727361 | None:intergenic | 30.0% |
| AACCTTTCTGACAATGCTTT+AGG | + | chr1.3:71727797-71727816 | MS.gene91417:CDS | 35.0% | |
| AGAAGGCCTTTCACAATTAA+AGG | + | chr1.3:71728444-71728463 | MS.gene91417:CDS | 35.0% | |
| AGGCTGAAGAAAATGCTAAA+AGG | + | chr1.3:71727294-71727313 | MS.gene91417:CDS | 35.0% | |
| CAAATCAAGCTTCCTCAAAT+GGG | - | chr1.3:71728119-71728138 | None:intergenic | 35.0% | |
| CCTCCTAGAACTTCTTAAAA+TGG | + | chr1.3:71727421-71727440 | MS.gene91417:CDS | 35.0% | |
| GAGAATGAACTCAAAGATGA+AGG | + | chr1.3:71728397-71728416 | MS.gene91417:CDS | 35.0% | |
| GGCCATAATTTGATTGAGAA+CGG | - | chr1.3:71727173-71727192 | None:intergenic | 35.0% | |
| TAAAGCCTTACTTATCTGGA+TGG | - | chr1.3:71728425-71728444 | None:intergenic | 35.0% | |
| TGATGTCATGAGGATATTCT+CGG | + | chr1.3:71727742-71727761 | MS.gene91417:CDS | 35.0% | |
| TGATTTCGTAGTAAGATGGT+TGG | - | chr1.3:71727237-71727256 | None:intergenic | 35.0% | |
| TGCTATAGCTAATGCTCTTA+AGG | + | chr1.3:71728255-71728274 | MS.gene91417:CDS | 35.0% | |
| TTAGATGAAAATGACCCTGA+TGG | + | chr1.3:71728640-71728659 | MS.gene91417:CDS | 35.0% | |
| TTCCAGCAATAAAATCTGAC+AGG | - | chr1.3:71727703-71727722 | None:intergenic | 35.0% | |
| TTCTTAAAATGGGTCCTAGT+AGG | + | chr1.3:71727432-71727451 | MS.gene91417:CDS | 35.0% | |
| TTGCCTTATCTGATGCTTTA+GGG | + | chr1.3:71728086-71728105 | MS.gene91417:CDS | 35.0% | |
| ! | ATTCCCTAAAGCATCAGATA+AGG | - | chr1.3:71728092-71728111 | None:intergenic | 35.0% |
| ! | CACTCAGAAGTATAAAACCT+TGG | + | chr1.3:71727262-71727281 | MS.gene91417:CDS | 35.0% |
| !! | CAGATAAGTAAGGCTTTAGA+AGG | + | chr1.3:71728427-71728446 | MS.gene91417:CDS | 35.0% |
| !! | CTTCTAAAGCCTTACTTATC+TGG | - | chr1.3:71728429-71728448 | None:intergenic | 35.0% |
| !! | GACCCATTTTAAGAAGTTCT+AGG | - | chr1.3:71727427-71727446 | None:intergenic | 35.0% |
| !! | TCAGGGTCATTTTCATCTAA+TGG | - | chr1.3:71728640-71728659 | None:intergenic | 35.0% |
| !!! | AGCAACAGAAGTTTTGGATT+AGG | + | chr1.3:71727617-71727636 | MS.gene91417:CDS | 35.0% |
| !!! | CCATTTTAAGAAGTTCTAGG+AGG | - | chr1.3:71727424-71727443 | None:intergenic | 35.0% |
| AAAATGGGTCCTAGTAGGAA+CGG | + | chr1.3:71727437-71727456 | MS.gene91417:CDS | 40.0% | |
| ACAGGTCTACTTCTTTCAAC+TGG | - | chr1.3:71727685-71727704 | None:intergenic | 40.0% | |
| AGACAACATGTTAGGTGTAG+AGG | + | chr1.3:71728141-71728160 | MS.gene91417:CDS | 40.0% | |
| ATTCTCAGAGAGGTTCAACT+TGG | - | chr1.3:71728383-71728402 | None:intergenic | 40.0% | |
| CACCGCAAACCAATATTATG+AGG | + | chr1.3:71727337-71727356 | MS.gene91417:CDS | 40.0% | |
| GAAGAATCTTATGAAGAGGG+TGG | + | chr1.3:71728676-71728695 | MS.gene91417:CDS | 40.0% | |
| GACAACATGTTAGGTGTAGA+GGG | + | chr1.3:71728142-71728161 | MS.gene91417:CDS | 40.0% | |
| GATTTGCGAGACAACATGTT+AGG | + | chr1.3:71728133-71728152 | MS.gene91417:CDS | 40.0% | |
| GCAAATCAAGCTTCCTCAAA+TGG | - | chr1.3:71728120-71728139 | None:intergenic | 40.0% | |
| GGAAACGTCATTTCTGATGA+AGG | + | chr1.3:71728565-71728584 | MS.gene91417:CDS | 40.0% | |
| GGCCGTTCTCAATCAAATTA+TGG | + | chr1.3:71727168-71727187 | MS.gene91417:CDS | 40.0% | |
| GTTGCCTTATCTGATGCTTT+AGG | + | chr1.3:71728085-71728104 | MS.gene91417:CDS | 40.0% | |
| TAAAACCTTGGACCTGAAAC+AGG | + | chr1.3:71727274-71727293 | MS.gene91417:CDS | 40.0% | |
| TATTATGAGGAAGAGCCAGA+TGG | + | chr1.3:71727350-71727369 | MS.gene91417:CDS | 40.0% | |
| TGCAACAGAATAACCAGAGA+CGG | + | chr1.3:71728481-71728500 | MS.gene91417:CDS | 40.0% | |
| TGCTAAAAGGATTGAGGACA+AGG | + | chr1.3:71727307-71727326 | MS.gene91417:CDS | 40.0% | |
| TTCTTTCAACTGGTCCTTGA+GGG | - | chr1.3:71727675-71727694 | None:intergenic | 40.0% | |
| TTTGAACGTCTGGACATTGA+CGG | + | chr1.3:71728544-71728563 | MS.gene91417:CDS | 40.0% | |
| TTTGATTCCATTGAAGGAGC+CGG | + | chr1.3:71727568-71727587 | MS.gene91417:CDS | 40.0% | |
| ! | ATTTTCGTTGTTCCTCCACA+AGG | + | chr1.3:71728044-71728063 | MS.gene91417:CDS | 40.0% |
| ! | CATCACAGTCTTTTCCATCA+GGG | - | chr1.3:71728657-71728676 | None:intergenic | 40.0% |
| ! | CATTTTCTTCAGCCTGTTTC+AGG | - | chr1.3:71727289-71727308 | None:intergenic | 40.0% |
| ! | CTGGCTCTTCCTCATAATAT+TGG | - | chr1.3:71727349-71727368 | None:intergenic | 40.0% |
| ! | CTTTGAGTTCATTCTCAGAG+AGG | - | chr1.3:71728393-71728412 | None:intergenic | 40.0% |
| ! | GACAATGCTTTAGGTGAGAA+AGG | + | chr1.3:71727806-71727825 | MS.gene91417:CDS | 40.0% |
| ! | GACCTGTCAGATTTTATTGC+TGG | + | chr1.3:71727698-71727717 | MS.gene91417:CDS | 40.0% |
| ! | TCATCACAGTCTTTTCCATC+AGG | - | chr1.3:71728658-71728677 | None:intergenic | 40.0% |
| ! | TGCTTCAGCAACAGAAGTTT+TGG | + | chr1.3:71727611-71727630 | MS.gene91417:CDS | 40.0% |
| !! | CACCTAAAGCATTGTCAGAA+AGG | - | chr1.3:71727802-71727821 | None:intergenic | 40.0% |
| !! | CTCATAATATTGGTTTGCGG+TGG | - | chr1.3:71727339-71727358 | None:intergenic | 40.0% |
| !! | GAAGGTTGATTTTGAACGTC+TGG | + | chr1.3:71728534-71728553 | MS.gene91417:CDS | 40.0% |
| !! | GAGAAAGGTGTTAGAGCATT+TGG | + | chr1.3:71727821-71727840 | MS.gene91417:CDS | 40.0% |
| AACATGTTAGGTGTAGAGGG+TGG | + | chr1.3:71728145-71728164 | MS.gene91417:CDS | 45.0% | |
| AAGGGCTTTCATTGAAGCAG+AGG | + | chr1.3:71727532-71727551 | MS.gene91417:CDS | 45.0% | |
| ACATCAAGTGCTTCTGCTTC+TGG | - | chr1.3:71727728-71727747 | None:intergenic | 45.0% | |
| ACATGTTAGGTGTAGAGGGT+GGG | + | chr1.3:71728146-71728165 | MS.gene91417:CDS | 45.0% | |
| ACTTTGAGCTTCTCTGTGGA+AGG | - | chr1.3:71727941-71727960 | None:intergenic | 45.0% | |
| ATACCTGAGCTTCCTGAACT+TGG | + | chr1.3:71728216-71728235 | MS.gene91417:CDS | 45.0% | |
| ATCTTATGAAGAGGGTGGTG+TGG | + | chr1.3:71728681-71728700 | MS.gene91417:CDS | 45.0% | |
| CAAGAAACTGCTTAGCTGCT+AGG | - | chr1.3:71728360-71728379 | None:intergenic | 45.0% | |
| CACTCATCTCGAGAACTTCA+AGG | - | chr1.3:71728294-71728313 | None:intergenic | 45.0% | |
| CCTGAAATCACAAAGCTGCT+TGG | + | chr1.3:71727850-71727869 | MS.gene91417:CDS | 45.0% | |
| CTTCTTTCAACTGGTCCTTG+AGG | - | chr1.3:71727676-71727695 | None:intergenic | 45.0% | |
| CTTGAAGTTCTCGAGATGAG+TGG | + | chr1.3:71728292-71728311 | MS.gene91417:CDS | 45.0% | |
| GAAAAATCTCCGGACAAGCT+TGG | + | chr1.3:71728613-71728632 | MS.gene91417:CDS | 45.0% | |
| GAAATCACAAAGCTGCTTGG+AGG | + | chr1.3:71727853-71727872 | MS.gene91417:CDS | 45.0% | |
| GAGAACTTTGAGCTTCTCTG+TGG | - | chr1.3:71727945-71727964 | None:intergenic | 45.0% | |
| GGAACAACGAAAATCCTCCA+AGG | - | chr1.3:71728038-71728057 | None:intergenic | 45.0% | |
| GTCTGTCTAGTGTTCTGACT+AGG | - | chr1.3:71727197-71727216 | None:intergenic | 45.0% | |
| TAGGGAATTGCACCCATTTG+AGG | + | chr1.3:71728104-71728123 | MS.gene91417:CDS | 45.0% | |
| TCTTTGACACCGTTCCTACT+AGG | - | chr1.3:71727449-71727468 | None:intergenic | 45.0% | |
| TGCACTCTTTGGCATAAAGC+TGG | - | chr1.3:71727394-71727413 | None:intergenic | 45.0% | |
| TGGAGCTGAATTTGCAGAAC+AGG | + | chr1.3:71727147-71727166 | MS.gene91417:CDS | 45.0% | |
| TGTCTAGTGTTCTGACTAGG+AGG | - | chr1.3:71727194-71727213 | None:intergenic | 45.0% | |
| TTCCTGAACTTGGAAGACGA+AGG | + | chr1.3:71728226-71728245 | MS.gene91417:CDS | 45.0% | |
| TTGATTCCATTGAAGGAGCC+GGG | + | chr1.3:71727569-71727588 | MS.gene91417:CDS | 45.0% | |
| ! | AGGTGCCATCCAGATAAGTA+AGG | + | chr1.3:71728417-71728436 | MS.gene91417:CDS | 45.0% |
| ! | ATATTCTCGGCTGCTCTAGA+AGG | + | chr1.3:71727755-71727774 | MS.gene91417:CDS | 45.0% |
| ! | CCAAGCAGCTTTGTGATTTC+AGG | - | chr1.3:71727853-71727872 | None:intergenic | 45.0% |
| ! | TCTAATGGACCAAGCTTGTC+CGG | - | chr1.3:71728625-71728644 | None:intergenic | 45.0% |
| ! | TGTGAAGCGTTCTTCTTCCT+TGG | + | chr1.3:71728018-71728037 | MS.gene91417:CDS | 45.0% |
| !! | CAGAAGCACTTGATGTCATG+AGG | + | chr1.3:71727732-71727751 | MS.gene91417:CDS | 45.0% |
| ACAAGGATAGGCGATGAAGG+CGG | + | chr1.3:71728061-71728080 | MS.gene91417:CDS | 50.0% | |
| ATCTCGAGAACTTCAAGGCG+AGG | - | chr1.3:71728289-71728308 | None:intergenic | 50.0% | |
| CATGTTAGGTGTAGAGGGTG+GGG | + | chr1.3:71728147-71728166 | MS.gene91417:CDS | 50.0% | |
| CGTTGTTCCTCCACAAGGAT+AGG | + | chr1.3:71728049-71728068 | MS.gene91417:CDS | 50.0% | |
| CTCCTTCGTCTTCCAAGTTC+AGG | - | chr1.3:71728231-71728250 | None:intergenic | 50.0% | |
| CTCTCTTAACTCTGCATGCC+TGG | - | chr1.3:71728194-71728213 | None:intergenic | 50.0% | |
| CTCTGAGTAAAGCTCTTGCC+AGG | + | chr1.3:71728173-71728192 | MS.gene91417:CDS | 50.0% | |
| CTTCCAAGTTCAGGAAGCTC+AGG | - | chr1.3:71728222-71728241 | None:intergenic | 50.0% | |
| GAACACTAGACAGACGCTTG+TGG | + | chr1.3:71727202-71727221 | MS.gene91417:CDS | 50.0% | |
| GAATTACCCGGCTCCTTCAA+TGG | - | chr1.3:71727578-71727597 | None:intergenic | 50.0% | |
| GACGATTCTCGTATCCCTCA+AGG | + | chr1.3:71727658-71727677 | MS.gene91417:CDS | 50.0% | |
| GAGGAGCTTACTGCACTCTT+TGG | - | chr1.3:71727405-71727424 | None:intergenic | 50.0% | |
| GGCTTTCATTGAAGCAGAGG+AGG | + | chr1.3:71727535-71727554 | MS.gene91417:CDS | 50.0% | |
| TCCACAAGGATAGGCGATGA+AGG | + | chr1.3:71728058-71728077 | MS.gene91417:CDS | 50.0% | |
| TTATGAAGAGGGTGGTGTGG+AGG | + | chr1.3:71728684-71728703 | MS.gene91417:CDS | 50.0% | |
| TTCATCGCCTATCCTTGTGG+AGG | - | chr1.3:71728059-71728078 | None:intergenic | 50.0% | |
| ! | GAAGCGTTCTTCTTCCTTGG+AGG | + | chr1.3:71728021-71728040 | MS.gene91417:CDS | 50.0% |
| ! | TTCAGCCTGTTTCAGGTCCA+AGG | - | chr1.3:71727282-71727301 | None:intergenic | 50.0% |
| !! | GCTAGGCAGTTTGCTATAGC+AGG | - | chr1.3:71728343-71728362 | None:intergenic | 50.0% |
| CAATTGTCGAGCTCCGTCTC+TGG | - | chr1.3:71728497-71728516 | None:intergenic | 55.0% | |
| CAGAGACGGAGCTCGACAAT+TGG | + | chr1.3:71728495-71728514 | MS.gene91417:CDS | 55.0% | |
| GAGGAAGAGCCAGATGGTGA+TGG | + | chr1.3:71727356-71727375 | MS.gene91417:CDS | 55.0% | |
| GCAGAACCTCCATCACCATC+TGG | - | chr1.3:71727368-71727387 | None:intergenic | 55.0% | |
| GCCTTCATCGCCTATCCTTG+TGG | - | chr1.3:71728062-71728081 | None:intergenic | 55.0% | |
| GGCTCTCACTGTGTTGCAGA+AGG | + | chr1.3:71728516-71728535 | MS.gene91417:CDS | 55.0% | |
| ! | AGGAGCACGTGCTATAGCTG+AGG | + | chr1.3:71727994-71728013 | MS.gene91417:CDS | 55.0% |
| !! | GAAGAGCCAGATGGTGATGG+AGG | + | chr1.3:71727359-71727378 | MS.gene91417:CDS | 55.0% |
| GGGTGGTGTGGAGGATGCAC+TGG | + | chr1.3:71728693-71728712 | MS.gene91417:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71727146 | 71728747 | 71727146 | ID=MS.gene91417 |
| chr1.3 | mRNA | 71727146 | 71728747 | 71727146 | ID=MS.gene91417.t1;Parent=MS.gene91417 |
| chr1.3 | exon | 71727146 | 71728747 | 71727146 | ID=MS.gene91417.t1.exon1;Parent=MS.gene91417.t1 |
| chr1.3 | CDS | 71727146 | 71728747 | 71727146 | ID=cds.MS.gene91417.t1;Parent=MS.gene91417.t1 |
| Gene Sequence |
| Protein sequence |
