AlfalfaGEDB | MS.gene91920

M. sativa cultivar XinJiangDaYe / MS.gene91920

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91920.t1	XP_003613630.1	99	410	4	0	1	410	1	410	3.80E-228	800.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91920.t1	O49840	73.4	428	90	6	1	408	1	424	8.5e-168	591.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91920.t1	Q2HTW4	99.0	410	4	0	1	410	1	410	2.8e-228	800.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04991	MS.gene91920	-0.810794	9.65E-51	-1.69E-46
MS.gene051122	MS.gene91920	0.854926	8.89E-62	-1.69E-46
MS.gene051541	MS.gene91920	0.822372	2.45E-53	-1.69E-46
MS.gene05216	MS.gene91920	0.809103	2.23E-50	-1.69E-46
MS.gene052674	MS.gene91920	0.857319	1.77E-62	-1.69E-46
MS.gene052675	MS.gene91920	0.850938	1.23E-60	-1.69E-46
MS.gene052677	MS.gene91920	0.857155	1.98E-62	-1.69E-46
MS.gene054479	MS.gene91920	0.804274	2.34E-49	-1.69E-46
MS.gene055701	MS.gene91920	0.82389	1.09E-53	-1.69E-46
MS.gene056480	MS.gene91920	0.827268	1.72E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene032819	MS.gene91920	PPI
MS.gene035805	MS.gene91920	PPI
MS.gene49553	MS.gene91920	PPI
MS.gene91920	MS.gene074040	PPI
MS.gene91920	MS.gene73119	PPI
MS.gene91920	MS.gene064542	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91920.t1	MTR_5g038870	99.024	410	4	0	1	410	1	410	0.0	839
MS.gene91920.t1	MTR_4g108270	71.006	338	96	2	45	381	54	390	0.0	521
MS.gene91920.t1	MTR_2g096950	59.596	396	142	3	1	394	1	380	1.14e-173	491
MS.gene91920.t1	MTR_7g061660	63.415	369	130	2	1	367	1	366	2.41e-169	480
MS.gene91920.t1	MTR_5g079840	60.440	364	139	3	1	361	1	362	1.68e-165	471
MS.gene91920.t1	MTR_5g088400	54.567	427	157	6	1	410	1	407	1.18e-160	458
MS.gene91920.t1	MTR_3g040800	59.497	358	143	2	12	367	43	400	6.61e-154	441
MS.gene91920.t1	MTR_7g009320	58.424	368	144	3	1	360	41	407	1.11e-152	441
MS.gene91920.t1	MTR_3g067795	58.402	363	145	4	1	360	3	362	2.03e-151	434
MS.gene91920.t1	MTR_5g038450	59.401	367	136	4	1	356	52	416	2.44e-151	437

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91920.t1	AT2G02800	71.127	426	105	4	1	409	1	425	0.0	607
MS.gene91920.t1	AT2G02800	71.127	426	105	4	1	409	1	425	0.0	607
MS.gene91920.t1	AT1G14370	70.423	426	108	5	1	409	1	425	0.0	590
MS.gene91920.t1	AT1G69790	71.739	368	94	3	1	360	1	366	0.0	544
MS.gene91920.t1	AT1G26970	64.833	418	131	6	1	409	1	411	0.0	534
MS.gene91920.t1	AT1G69790	71.508	358	96	3	5	360	2	355	0.0	531
MS.gene91920.t1	AT1G07570	64.305	367	121	3	1	365	1	359	1.13e-173	491
MS.gene91920.t1	AT1G07570	64.305	367	121	3	1	365	1	359	1.13e-173	491
MS.gene91920.t1	AT1G07570	64.305	367	121	3	1	365	1	359	1.13e-173	491
MS.gene91920.t1	AT5G02290	60.104	386	144	2	1	384	1	378	2.71e-171	484

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Find 97 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGTATACATCACTCT+TGG	0.548445	5.3:+27221615	None:intergenic
AACCACTGTCTTGGTCAATA+AGG	0.357178	5.3:-27222315	MS.gene91920:CDS
AACTTACCAACCACTCTTTA+TGG	0.153876	5.3:+27222977	None:intergenic
AAGAAGACTATTTCGGATCA+TGG	0.394031	5.3:-27221485	MS.gene91920:CDS
AAGAGTGATGTATACAGCTT+TGG	0.455299	5.3:-27221613	MS.gene91920:CDS
AAGATTTCACCCTCAGACCT+TGG	0.471375	5.3:+27223201	None:intergenic
AAGCTCCTAAACAAGCATCC+CGG	0.624627	5.3:-27221330	MS.gene91920:CDS
AATGAGAATGCTTTAAGATT+GGG	0.373453	5.3:+27223171	None:intergenic
AATTCTAAACTCTCCGATTT+TGG	0.176358	5.3:-27222086	MS.gene91920:CDS
AATTTAGCACTTACCAGAAG+TGG	0.477679	5.3:+27224406	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAACCAAACCAAAAT+TGG	+	chr5.3:27221534-27221553	None:intergenic	30.0%
ACATTAAGAACACAAGATGA+TGG	+	chr5.3:27221338-27221357	None:intergenic	30.0%
ATAAGGATGAAAGTAGCTAT+CGG	-	chr5.3:27223361-27223380	MS.gene91920:intron	30.0%
ATTGCCAAAATATGTTGCTA+GGG	+	chr5.3:27223811-27223830	None:intergenic	30.0%
CAAATTAATTGGTTACTGCT+TGG	-	chr5.3:27223113-27223132	MS.gene91920:CDS	30.0%
CTAAAACCCAATTACATGAA+GGG	+	chr5.3:27221423-27221442	None:intergenic	30.0%
CTTCTTACTTATCATGGATT+TGG	-	chr5.3:27223537-27223556	MS.gene91920:intron	30.0%
GATAAGTACTTCAATAGAAG+AGG	+	chr5.3:27221829-27221848	None:intergenic	30.0%
GATGGAATTGTTAAACTAGA+AGG	+	chr5.3:27222398-27222417	None:intergenic	30.0%
GCAAAGAATTCAAACTATTG+AGG	+	chr5.3:27222736-27222755	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	27221198	27224483	27221198	ID=MS.gene91920
chr5.3	mRNA	27221198	27224483	27221198	ID=MS.gene91920.t1;Parent=MS.gene91920
chr5.3	exon	27224420	27224483	27224420	ID=MS.gene91920.t1.exon1;Parent=MS.gene91920.t1
chr5.3	CDS	27224420	27224483	27224420	ID=cds.MS.gene91920.t1;Parent=MS.gene91920.t1
chr5.3	exon	27222984	27223303	27222984	ID=MS.gene91920.t1.exon2;Parent=MS.gene91920.t1
chr5.3	CDS	27222984	27223303	27222984	ID=cds.MS.gene91920.t1;Parent=MS.gene91920.t1
chr5.3	exon	27222477	27222612	27222477	ID=MS.gene91920.t1.exon3;Parent=MS.gene91920.t1
chr5.3	CDS	27222477	27222612	27222477	ID=cds.MS.gene91920.t1;Parent=MS.gene91920.t1
chr5.3	exon	27222210	27222346	27222210	ID=MS.gene91920.t1.exon4;Parent=MS.gene91920.t1
chr5.3	CDS	27222210	27222346	27222210	ID=cds.MS.gene91920.t1;Parent=MS.gene91920.t1
chr5.3	exon	27221991	27222114	27221991	ID=MS.gene91920.t1.exon5;Parent=MS.gene91920.t1
chr5.3	CDS	27221991	27222114	27221991	ID=cds.MS.gene91920.t1;Parent=MS.gene91920.t1
chr5.3	exon	27221198	27221649	27221198	ID=MS.gene91920.t1.exon6;Parent=MS.gene91920.t1
chr5.3	CDS	27221198	27221649	27221198	ID=cds.MS.gene91920.t1;Parent=MS.gene91920.t1

Gene Sequence

>MS.gene91920

ATGGGTAATTGTCTTGATTCTTCTGCTAAAGTTGATGCTGCTCAAAGCTCTAGATCCACTTCTGGTAAGTGCTAAATTGGTCTTCTGAATTAGTCGATTTTTGGACCGGATACCGAATTTTAGAAAGAATTTTTTTTCCATCATCTTGTGTTCTTAATGTTATGTTCATGATTTTTTTTTTGGGAGGCTTGTGATCATTATGTTCTTGTGGTTATTTTTTTTCCCTTCATGTAATTGGGTTTTAGAATTCATTATTAGTTACGTAATTGTGTTTTGAATTCATTATTGTGATCATTTTGTTTTCCTATTGATTTTATTGTCCTCTTTTTTATTCCAATTTTGGTTTGGTTTGGTTTTGATTTTTTTTATTTGTTTGGTTTGGTTTGATTTGTGTAGCTAGGATTGATTGAATCTTAAAGCACATTGTTTAGTGTTTTTTGGCCTTTCCTTTTTTTGGGTATTTTTTTTTTCTTTCTCTCTTTGTAAATTTTAGTTTGAATTGTATTAATTTGGGAATAAGAGTTCAATTTCATTACATACTTCTTTTCATAACATGGTGTTTCTTTTGGTGCTTTTAAAAAAAGTTGATTCTGGGTTTTATCTATTTCTTGTTATTAAATTTTCATCTCCTCTTCTATTGAAGTACTTATCAATATAATGTCTTCCTAATGTTTTAGGAGTGAAGTATTTTTAGAATTGAAGTTTGGTTTTCTTTTATCTTCCTAAGGGAGTTGAATTGTCTCCAAAGTTGTAGCCATGGATTAGGATACTTATGGAGTATTAAGAAACAGGCCCCGAGTTTGATCCGTGCTGTCAACAAATTAACCACGCATTTGCCCGAGTTGAATTATTTCAAAGTTTGATTTCCATTTTGAGAATTGAATTATTTATGAATAATTTATAGTCAAATTAAAGTATTTTATCACATCAAAATGGGTATTTCAGCAATTAAACTAAGCGAAAAAATAGGTGTTTGTTGCGATTATGTTTGTTATGGAGTGAAAAGATGAGATTGTTTAACCATAACTAAAGAAAAGCACTGTTGTAAAATGCATATAAGTCTAAAATACTGGTTCAGAATTGAACTTTTGATGGTTGAATGTGAAAGGTTATTCGAAACTACTTTCTTTTGTGCATGTAATGACATACTTACAATTTTTTTATTCTTCTTTGGCATCAGGAACCTCAAAAACTACTCCTTCTAGTTTAACAATTCCATCATACAGTGACAAAAGCAATTCCTCAAGTCTTCTTCCTACACCAAGGTCTGAGGGTGAAATCTTATCTTCTCCCAATCTTAAAGCATTCTCATTCAATGAGCTGAAAAATGCCACGAGGAATTTTCGTCCCGATAGTCTTCTAGGCGAAGGCGGATTTGGTCATGTTTATAAGGGATGGATCGACGAACACACATTCACAGCTGCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAAAGACTTAAGCCTGAAGGTTTTCAAGGCCATAAAGAGTGGTTGGTAAGTTCTTTATTTCTAGGCCCATTATGGGACTACCTCAATAGTTTGAATTCTTTGCGAGAAGTGATTCCGCATATTCACGCAATCAGCACTTTAGAGCAAACGGATCAACATTGGATCGATCAAGATCAAATAGTTCTGATTTTGAGTTTGCTTTTAAATACCATTTACCCTGCTTAAAATCAGAGTTGTGCAATCTTGATCTCATGGCTCATACTGATTGCTTGAATGTGTGAAATCTTTGATTATAGTGAATCCGAATTCATACTTCTACGCCATTTGCTTTTCCCCAAAAGACAAATATATGGTCTTTTTTGTTTCTTATAAACGATATTGAATTAATGATTGATGAAAGTTTAATCTATTTGCAGACTGAGGTTAACTACCTTGGACAACTTCACCATCCTAATCTAGTCAAATTAATTGGTTACTGCTTGGAAGGAGAGAACAGGCTTTTGGTATATGAATTTATGCCTAAAGGGAGCTTAGAGAACCATCTTTTTAGACGTAAGTTGCCAAAATCAGTAAAAAGCTGCTTCCTTTCTTAACTAAGATGTTTGAAAATCGAGATTTTGATTTGTTAATGGCCAAAACAATTGATGTCTAAGTTTGATTTGTGTTCATTGTAATTTTACAGGAGGACCACAACCACTGTCTTGGTCAATAAGGATGAAAGTAGCTATCGGTGCTGCTAGAGGTCTCTCGTTTCTTCACAATGCAAAATCTCAAGTCATATACCGTGATTTCAAAGCTTCAAACATCCTTTTAGACGCGGTAAGATCACTGAGCATATGTAATCATACTTATAACTTCTTAATTTTTTTTGTTATATGTATAAACTTCTTACTTATCATGGATTTGGATTGCAGGAGTTTAATTCTAAACTCTCCGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGTGATAGAACTCATGTGTCTACTCAAGTAGTCGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTATACTTTAGCTTCACCTAAACTATTATTGATTCTTAGTTGGCCTCAATAGGCTTAATACTTTTCATTTTCAACTTCATTGCGTTTTTTTGTTAAACTGTTTCGTTGAACGAGGAACCCTAGCAACATATTTTGGCAATCTCTTTCTAAAAATCCGATTATTTAGTGAAATCTCTTTAAACAAGTCAACACGCTATCTATCAGTGTAGCCGGCATGATATTTCACCAAATAACTGTTGAAAGATAATTGTGAAATAGTGTATTGTCGGAAGAAGACTCGTGTCATTTGTCTTCGGTATAATGTTAAACGTTACACTAAAGCCTTGATGATTGTTTTTCAGGTCGGCTAACGGCCAAGAGTGATGTATACAGCTTTGGAGTTGTTATGCTTGAACTTTTATCTGGAAGACGAGCCGTTGATAAAACAATAGCTGGCGTGGACCAGAATCTAGTAGACTGGGCAAAACCATATTTAGGCGATAAAAGAAGACTATTTCGGATCATGGATTCAAAATTAGAAGGTCAATATCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCACTACAATGCCTTAACAGAGAAGCTAAGGCAAGGCCTTCAATGACAGAGGTTTTAGCAACCCTAGAACAGATAGAAGCTCCTAAACAAGCATCCCGGAATTCCTTATCGGAACATCATAGATTCCATGCTCCGGTCAGAAGGTCTCCTGCACGAAACCGAACGCCTTCAAATGTTACTCCTACTGCATCGCCATTGCCATCTGTCCGGCAATCTCCTCGTGCGCACTAG

Protein sequence

>MS.gene91920.t1

MGNCLDSSAKVDAAQSSRSTSGTSKTTPSSLTIPSYSDKSNSSSLLPTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEHTFTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSIRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPSMTEVLATLEQIEAPKQASRNSLSEHHRFHAPVRRSPARNRTPSNVTPTASPLPSVRQSPRAH