Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92602.t1 | NP_001235628.1 | 86 | 50 | 7 | 0 | 89 | 138 | 70 | 119 | 4.10E-12 | 81.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92602.t1 | Q9LJA0 | 80.0 | 50 | 10 | 0 | 89 | 138 | 70 | 119 | 3.8e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92602.t1 | A0A445M7U1 | 86.0 | 50 | 7 | 0 | 89 | 138 | 70 | 119 | 3.0e-12 | 81.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049404 | MS.gene92602 | 0.802713 | 4.92E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene92602 | 0.811616 | 6.41E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene92602 | 0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene92602 | 0.803476 | 3.42E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene92602 | 0.807645 | 4.57E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene92602 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene92602 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene92602 | 0.806772 | 6.99E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene92602 | 0.823851 | 1.11E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene92602 | 0.804212 | 2.41E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene92602 | 0.803445 | 3.47E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene92602 | 0.808347 | 3.24E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene92602 | 0.850054 | 2.18E-60 | -1.69E-46 |
| MS.gene057693 | MS.gene92602 | 0.816418 | 5.59E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene92602 | -0.811748 | 6.00E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene92602 | 0.807065 | 6.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92602.t1 | MTR_5g006340 | 86.000 | 50 | 7 | 0 | 89 | 138 | 70 | 119 | 3.17e-20 | 84.7 |
| MS.gene92602.t1 | MTR_1g103690 | 82.000 | 50 | 9 | 0 | 89 | 138 | 70 | 119 | 6.79e-19 | 81.3 |
| MS.gene92602.t1 | MTR_1g081610 | 82.000 | 50 | 9 | 0 | 89 | 138 | 70 | 119 | 1.63e-18 | 80.1 |
| MS.gene92602.t1 | MTR_4g087520 | 76.000 | 50 | 12 | 0 | 89 | 138 | 15 | 64 | 3.11e-18 | 78.6 |
| MS.gene92602.t1 | MTR_4g087490 | 68.000 | 50 | 16 | 0 | 89 | 138 | 109 | 158 | 8.32e-16 | 72.8 |
| MS.gene92602.t1 | MTR_4g087510 | 66.000 | 50 | 17 | 0 | 89 | 138 | 108 | 157 | 1.80e-15 | 72.0 |
| MS.gene92602.t1 | MTR_1g081620 | 68.000 | 50 | 16 | 0 | 89 | 138 | 69 | 118 | 3.05e-15 | 71.2 |
| MS.gene92602.t1 | MTR_7g087110 | 64.000 | 50 | 18 | 0 | 89 | 138 | 127 | 176 | 4.40e-15 | 70.9 |
| MS.gene92602.t1 | MTR_1g081640 | 45.556 | 90 | 43 | 3 | 54 | 138 | 30 | 118 | 1.83e-12 | 63.5 |
| MS.gene92602.t1 | MTR_7g078070 | 58.000 | 50 | 21 | 0 | 89 | 138 | 30 | 79 | 2.21e-12 | 62.8 |
| MS.gene92602.t1 | MTR_1g081625 | 43.956 | 91 | 43 | 3 | 54 | 138 | 30 | 118 | 2.37e-12 | 63.2 |
| MS.gene92602.t1 | MTR_7g078070 | 58.000 | 50 | 21 | 0 | 89 | 138 | 123 | 172 | 2.59e-12 | 63.2 |
| MS.gene92602.t1 | MTR_7g078070 | 58.000 | 50 | 21 | 0 | 89 | 138 | 63 | 112 | 2.89e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92602.t1 | AT3G22460 | 80.000 | 50 | 10 | 0 | 89 | 138 | 70 | 119 | 2.04e-20 | 82.8 |
| MS.gene92602.t1 | AT3G22460 | 80.000 | 50 | 10 | 0 | 89 | 138 | 15 | 64 | 6.75e-20 | 82.8 |
| MS.gene92602.t1 | AT4G14880 | 86.957 | 46 | 6 | 0 | 89 | 134 | 67 | 112 | 1.08e-18 | 80.5 |
| MS.gene92602.t1 | AT4G14880 | 86.957 | 46 | 6 | 0 | 89 | 134 | 67 | 112 | 1.08e-18 | 80.5 |
| MS.gene92602.t1 | AT4G14880 | 86.957 | 46 | 6 | 0 | 89 | 134 | 67 | 112 | 1.08e-18 | 80.5 |
| MS.gene92602.t1 | AT4G14880 | 86.957 | 46 | 6 | 0 | 89 | 134 | 67 | 112 | 1.08e-18 | 80.5 |
| MS.gene92602.t1 | AT4G14880 | 86.957 | 46 | 6 | 0 | 89 | 134 | 67 | 112 | 1.08e-18 | 80.5 |
| MS.gene92602.t1 | AT3G59760 | 70.000 | 50 | 15 | 0 | 89 | 138 | 175 | 224 | 1.26e-16 | 75.5 |
| MS.gene92602.t1 | AT3G59760 | 70.000 | 50 | 15 | 0 | 89 | 138 | 175 | 224 | 1.30e-16 | 75.5 |
| MS.gene92602.t1 | AT3G59760 | 70.000 | 50 | 15 | 0 | 89 | 138 | 175 | 224 | 1.32e-16 | 75.5 |
| MS.gene92602.t1 | AT2G43750 | 74.000 | 50 | 13 | 0 | 89 | 138 | 137 | 186 | 2.65e-16 | 74.7 |
| MS.gene92602.t1 | AT2G43750 | 74.000 | 50 | 13 | 0 | 89 | 138 | 137 | 186 | 2.65e-16 | 74.7 |
| MS.gene92602.t1 | AT3G04940 | 72.000 | 50 | 14 | 0 | 89 | 138 | 70 | 119 | 1.24e-15 | 72.4 |
| MS.gene92602.t1 | AT3G04940 | 72.000 | 50 | 14 | 0 | 89 | 138 | 70 | 119 | 1.24e-15 | 72.4 |
| MS.gene92602.t1 | AT3G03630 | 64.000 | 50 | 18 | 0 | 89 | 138 | 161 | 210 | 7.23e-15 | 70.5 |
| MS.gene92602.t1 | AT5G28020 | 66.000 | 50 | 17 | 0 | 89 | 138 | 69 | 118 | 8.10e-14 | 67.4 |
| MS.gene92602.t1 | AT5G28020 | 66.000 | 50 | 17 | 0 | 89 | 138 | 69 | 118 | 8.10e-14 | 67.4 |
| MS.gene92602.t1 | AT5G28020 | 66.000 | 50 | 17 | 0 | 89 | 138 | 69 | 118 | 8.10e-14 | 67.4 |
| MS.gene92602.t1 | AT5G28020 | 66.000 | 50 | 17 | 0 | 89 | 138 | 69 | 118 | 8.10e-14 | 67.4 |
| MS.gene92602.t1 | AT5G28020 | 66.000 | 50 | 17 | 0 | 89 | 138 | 69 | 118 | 8.10e-14 | 67.4 |
| MS.gene92602.t1 | AT5G28030 | 62.000 | 50 | 19 | 0 | 89 | 138 | 69 | 118 | 1.42e-11 | 60.5 |
| MS.gene92602.t1 | AT5G28030 | 62.000 | 50 | 19 | 0 | 89 | 138 | 69 | 118 | 2.02e-11 | 60.5 |
| MS.gene92602.t1 | AT5G28030 | 62.000 | 50 | 19 | 0 | 89 | 138 | 69 | 118 | 2.02e-11 | 60.5 |
| MS.gene92602.t1 | AT5G28030 | 62.000 | 50 | 19 | 0 | 89 | 138 | 69 | 118 | 2.02e-11 | 60.5 |
| MS.gene92602.t1 | AT5G28030 | 62.000 | 50 | 19 | 0 | 89 | 138 | 69 | 118 | 2.02e-11 | 60.5 |
| MS.gene92602.t1 | AT3G61440 | 56.000 | 50 | 22 | 0 | 89 | 138 | 111 | 160 | 3.11e-11 | 60.1 |
| MS.gene92602.t1 | AT3G61440 | 56.000 | 50 | 22 | 0 | 89 | 138 | 111 | 160 | 3.85e-11 | 59.7 |
| MS.gene92602.t1 | AT3G61440 | 56.000 | 50 | 22 | 0 | 89 | 138 | 15 | 64 | 4.01e-11 | 59.3 |
Find 28 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTAGCTTGGTCAAAT+TGG | 0.202101 | 6.4:+34364500 | None:intergenic |
| TGAAAGTTTGGCTTACATTT+TGG | 0.245706 | 6.4:-34364532 | MS.gene92602:intron |
| ACTCCGCGTGCCAAGAGTTT+TGG | 0.290946 | 6.4:-34364877 | MS.gene92602:CDS |
| TTCAATTTATTACCTTTATT+CGG | 0.294078 | 6.4:+34366438 | None:intergenic |
| CTCTTGGCACGCGGAGTAAA+CGG | 0.323874 | 6.4:+34364883 | None:intergenic |
| ACGTGCAAAACGAGTATTAA+AGG | 0.332430 | 6.4:+34364369 | None:intergenic |
| ACCCTTGGCCGCTTCCTTGA+AGG | 0.406933 | 6.4:+34364285 | None:intergenic |
| ATGCCGGTATTACCACTTGT+TGG | 0.456820 | 6.4:+34364316 | None:intergenic |
| AGTTACCTCCTCTGCTAGCT+TGG | 0.457680 | 6.4:+34364491 | None:intergenic |
| CGGCATAGGATTAGCCTTCA+AGG | 0.462521 | 6.4:-34364299 | MS.gene92602:CDS |
| GCTGTTAATTGGAAAGGCAT+TGG | 0.481392 | 6.4:-34364925 | MS.gene92602:CDS |
| AATTATGAGCTTGTAACCCT+TGG | 0.500418 | 6.4:+34364270 | None:intergenic |
| AATGAGAGTTCCAAAACTCT+TGG | 0.517865 | 6.4:+34364867 | None:intergenic |
| TTGGAGGAAGCTCGTCAACT+TGG | 0.522024 | 6.4:-34364846 | MS.gene92602:intron |
| AGCCTTCAAGGAAGCGGCCA+AGG | 0.550276 | 6.4:-34364287 | MS.gene92602:CDS |
| GAACCAACAAGTGGTAATAC+CGG | 0.564947 | 6.4:-34364319 | MS.gene92602:CDS |
| CTTGAAGGCTAATCCTATGC+CGG | 0.570301 | 6.4:+34364300 | None:intergenic |
| ATTAACAGCATAAAATGACT+TGG | 0.574271 | 6.4:+34364939 | None:intergenic |
| AGGATTAGCCTTCAAGGAAG+CGG | 0.579268 | 6.4:-34364293 | MS.gene92602:CDS |
| TACCACTTGTTGGTTCAATG+AGG | 0.584508 | 6.4:+34364326 | None:intergenic |
| ACAAGTGGTAATACCGGCAT+AGG | 0.584831 | 6.4:-34364313 | MS.gene92602:CDS |
| AGTATTAAAGGTCAGTTGCA+AGG | 0.588691 | 6.4:+34364381 | None:intergenic |
| GCCTTCAAGGAAGCGGCCAA+GGG | 0.598289 | 6.4:-34364286 | MS.gene92602:CDS |
| TTTGACCAAGCTAGCAGAGG+AGG | 0.607369 | 6.4:-34364496 | MS.gene92602:intron |
| GTCCTCATTGAACCAACAAG+TGG | 0.633075 | 6.4:-34364328 | MS.gene92602:CDS |
| CGGAGTAAACGGAATCTCAA+CGG | 0.654511 | 6.4:+34364894 | None:intergenic |
| CAATTTGACCAAGCTAGCAG+AGG | 0.667069 | 6.4:-34364499 | MS.gene92602:CDS |
| GTTCCAAAACTCTTGGCACG+CGG | 0.677046 | 6.4:+34364874 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAACAAAAGAA+AGG | + | chr6.4:34366037-34366056 | None:intergenic | 10.0% |
| !!! | TTTATTTTCTTTCAAATTTA+TGG | - | chr6.4:34365508-34365527 | MS.gene92602:intron | 10.0% |
| !!! | TTTCTTTTGTTTATTTTATT+TGG | - | chr6.4:34366036-34366055 | MS.gene92602:intron | 10.0% |
| !! | AAATAAATATCAAACCAAAA+TGG | + | chr6.4:34365233-34365252 | None:intergenic | 15.0% |
| !! | TTCAATTTATTACCTTTATT+CGG | + | chr6.4:34364203-34364222 | None:intergenic | 15.0% |
| !!! | ATCTTATCTTATGAAATTTT+AGG | + | chr6.4:34364585-34364604 | None:intergenic | 15.0% |
| !!! | TATTTTATGTCTTTCAATTT+GGG | + | chr6.4:34364523-34364542 | None:intergenic | 15.0% |
| !!! | TTATTTTATGTCTTTCAATT+TGG | + | chr6.4:34364524-34364543 | None:intergenic | 15.0% |
| !!! | TTCATTTTAGCTATTTTTTT+TGG | - | chr6.4:34364247-34364266 | MS.gene92602:CDS | 15.0% |
| !! | AACAAAGTAATTGATTAGAT+AGG | + | chr6.4:34365851-34365870 | None:intergenic | 20.0% |
| !! | CTAATTATAATTCTTTGATG+TGG | - | chr6.4:34366222-34366241 | MS.gene92602:intron | 20.0% |
| !! | GAGAAGAAAAATAAAACAAA+TGG | + | chr6.4:34364552-34364571 | None:intergenic | 20.0% |
| !! | GTTGAAATTTATCTATGAAT+TGG | - | chr6.4:34365985-34366004 | MS.gene92602:intron | 20.0% |
| !! | TACAAAATTATCCATATTCA+TGG | + | chr6.4:34365107-34365126 | None:intergenic | 20.0% |
| !! | TGAATTATAATTTATGCTCT+TGG | - | chr6.4:34365544-34365563 | MS.gene92602:intron | 20.0% |
| !!! | ATCTCTTTTATAGCTTTTTT+TGG | - | chr6.4:34365334-34365353 | MS.gene92602:intron | 20.0% |
| !!! | TAATTTTGTATCGATGAAAT+TGG | - | chr6.4:34365190-34365209 | MS.gene92602:intron | 20.0% |
| !!! | TTCAGTATTTTTCTTTTGAA+TGG | - | chr6.4:34365473-34365492 | MS.gene92602:intron | 20.0% |
| ! | AAATCCTGAAAATTAAATGG+AGG | + | chr6.4:34364385-34364404 | None:intergenic | 25.0% |
| ! | AATCCTGAAAATTAAATGGA+GGG | + | chr6.4:34364384-34364403 | None:intergenic | 25.0% |
| ! | ATTAACAGCATAAAATGACT+TGG | + | chr6.4:34365702-34365721 | None:intergenic | 25.0% |
| ! | GTGAAATCCTGAAAATTAAA+TGG | + | chr6.4:34364388-34364407 | None:intergenic | 25.0% |
| ! | TAATCACTATGAAACTACAA+AGG | + | chr6.4:34365284-34365303 | None:intergenic | 25.0% |
| ! | TGAAATATAGAGGAAGAATA+AGG | + | chr6.4:34364450-34364469 | None:intergenic | 25.0% |
| !! | GAGGTGAAATTTGATTATTT+TGG | + | chr6.4:34364310-34364329 | None:intergenic | 25.0% |
| !! | TTTAGAGAGAAAATCCATTT+TGG | - | chr6.4:34365216-34365235 | MS.gene92602:intron | 25.0% |
| !! | TTTTATGCTGTTAATTGGAA+AGG | - | chr6.4:34365707-34365726 | MS.gene92602:intron | 25.0% |
| !!! | AAAGGTTTGGATTTTGATTT+GGG | + | chr6.4:34364652-34364671 | None:intergenic | 25.0% |
| !!! | AGTCATTTTATGCTGTTAAT+TGG | - | chr6.4:34365702-34365721 | MS.gene92602:intron | 25.0% |
| !!! | TAGGTTTTGAATCTAAAAAG+AGG | + | chr6.4:34364679-34364698 | None:intergenic | 25.0% |
| !!! | TTGATTATTTTGGTAGAAGA+GGG | + | chr6.4:34364414-34364433 | None:intergenic | 25.0% |
| !!! | TTTGATTATTTTGGTAGAAG+AGG | + | chr6.4:34364415-34364434 | None:intergenic | 25.0% |
| AAACAAAAGAAAGGAAAGTC+CGG | + | chr6.4:34366028-34366047 | None:intergenic | 30.0% | |
| AATATAGAGGAAGAATAAGG+AGG | + | chr6.4:34364447-34364466 | None:intergenic | 30.0% | |
| AATCTAAAAAGAGGAGAGAA+AGG | + | chr6.4:34364670-34364689 | None:intergenic | 30.0% | |
| AATCTGTCATGAAGAAAACT+AGG | + | chr6.4:34366180-34366199 | None:intergenic | 30.0% | |
| ACATAAACGTGATTAAGAGA+AGG | + | chr6.4:34364704-34364723 | None:intergenic | 30.0% | |
| ATATAGAGGAAGAATAAGGA+GGG | + | chr6.4:34364446-34364465 | None:intergenic | 30.0% | |
| GATATATTCCAAACATGACT+TGG | - | chr6.4:34365905-34365924 | MS.gene92602:intron | 30.0% | |
| GCATGCAAAACAATCAAAAT+GGG | + | chr6.4:34365419-34365438 | None:intergenic | 30.0% | |
| TATATTTCACCACTTTCACA+TGG | - | chr6.4:34364461-34364480 | MS.gene92602:intron | 30.0% | |
| TTTCCTGAAAATTAGATGGA+GGG | + | chr6.4:34364498-34364517 | None:intergenic | 30.0% | |
| ! | CCATCAAACTATCTAAAACA+AGG | + | chr6.4:34365580-34365599 | None:intergenic | 30.0% |
| ! | GGATTTTCCTGAAAATTAGA+TGG | + | chr6.4:34364502-34364521 | None:intergenic | 30.0% |
| ! | TCTTTTGAATGGTTCATGTT+TGG | - | chr6.4:34365484-34365503 | MS.gene92602:intron | 30.0% |
| ! | TTGTTGTGATTTTCAGAACA+GGG | - | chr6.4:34365658-34365677 | MS.gene92602:intron | 30.0% |
| ! | TTTTCCTGAAAATTAGATGG+AGG | + | chr6.4:34364499-34364518 | None:intergenic | 30.0% |
| !! | CAAATTTATGGACTGACTTT+TGG | - | chr6.4:34365520-34365539 | MS.gene92602:intron | 30.0% |
| !! | TGAAAGTTTGGCTTACATTT+TGG | - | chr6.4:34366106-34366125 | MS.gene92602:intron | 30.0% |
| !! | TTAGCTTTTGTAGCTGATAT+TGG | - | chr6.4:34366433-34366452 | MS.gene92602:intron | 30.0% |
| !! | TTTCCCTCCATTTAATTTTC+AGG | - | chr6.4:34364378-34364397 | MS.gene92602:CDS | 30.0% |
| !! | TTTGTTGTGATTTTCAGAAC+AGG | - | chr6.4:34365657-34365676 | MS.gene92602:intron | 30.0% |
| !!! | AAGGTTTGGATTTTGATTTG+GGG | + | chr6.4:34364651-34364670 | None:intergenic | 30.0% |
| !!! | ATTTTGATTGTTTTGCATGC+CGG | - | chr6.4:34365419-34365438 | MS.gene92602:intron | 30.0% |
| !!! | CCTTGTTTTAGATAGTTTGA+TGG | - | chr6.4:34365577-34365596 | MS.gene92602:intron | 30.0% |
| !!! | GAAAGGTTTGGATTTTGATT+TGG | + | chr6.4:34364653-34364672 | None:intergenic | 30.0% |
| !!! | TTGATTATTTTGGCAGAAGA+AGG | + | chr6.4:34364300-34364319 | None:intergenic | 30.0% |
| AAAAAGAGGAGAGAAAGGTT+TGG | + | chr6.4:34364665-34364684 | None:intergenic | 35.0% | |
| AATGAGAGTTCCAAAACTCT+TGG | + | chr6.4:34365774-34365793 | None:intergenic | 35.0% | |
| AATTATGAGCTTGTAACCCT+TGG | + | chr6.4:34366371-34366390 | None:intergenic | 35.0% | |
| ACCTGTTAGCAGATAGAATT+GGG | + | chr6.4:34364926-34364945 | None:intergenic | 35.0% | |
| ACGTGATTAAGAGAAGGAAT+AGG | + | chr6.4:34364698-34364717 | None:intergenic | 35.0% | |
| ACGTGCAAAACGAGTATTAA+AGG | + | chr6.4:34366272-34366291 | None:intergenic | 35.0% | |
| AGCAAAAACCAAGTCATGTT+TGG | + | chr6.4:34365916-34365935 | None:intergenic | 35.0% | |
| AGTATTAAAGGTCAGTTGCA+AGG | + | chr6.4:34366260-34366279 | None:intergenic | 35.0% | |
| GCAACAGAATAAGAAGAAGA+AGG | + | chr6.4:34364956-34364975 | None:intergenic | 35.0% | |
| GGCATGCAAAACAATCAAAA+TGG | + | chr6.4:34365420-34365439 | None:intergenic | 35.0% | |
| GTGAAAGTGGTGAAATATAG+AGG | + | chr6.4:34364460-34364479 | None:intergenic | 35.0% | |
| TACCTGTTAGCAGATAGAAT+TGG | + | chr6.4:34364927-34364946 | None:intergenic | 35.0% | |
| TCTATTTCACCACTTTCACA+TGG | - | chr6.4:34364347-34364366 | MS.gene92602:CDS | 35.0% | |
| TGAAATAGAGAGATAGAGTG+AGG | + | chr6.4:34364336-34364355 | None:intergenic | 35.0% | |
| ! | ACAAACTAATCACTTGTTGC+CGG | + | chr6.4:34365441-34365460 | None:intergenic | 35.0% |
| ! | ATTTTGTAGCCATGTGAAAG+TGG | + | chr6.4:34364359-34364378 | None:intergenic | 35.0% |
| ! | TTTCCCTCCATCTAATTTTC+AGG | - | chr6.4:34364492-34364511 | MS.gene92602:intron | 35.0% |
| !! | TTTTGCTTTGAGTGATCTGT+TGG | - | chr6.4:34365929-34365948 | MS.gene92602:intron | 35.0% |
| !!! | AAGAGTTTTGGAACTCTCAT+TGG | - | chr6.4:34365773-34365792 | MS.gene92602:intron | 35.0% |
| !!! | ATTTTAGAGCCATGTGAAAG+TGG | + | chr6.4:34364473-34364492 | None:intergenic | 35.0% |
| !!! | GGCGTGATTTATTTTTTGTC+CGG | - | chr6.4:34366006-34366025 | MS.gene92602:intron | 35.0% |
| !!! | TTGGCTTACATTTTGGAGTA+TGG | - | chr6.4:34366113-34366132 | MS.gene92602:intron | 35.0% |
| AATAGAGAGATAGAGTGAGG+AGG | + | chr6.4:34364333-34364352 | None:intergenic | 40.0% | |
| ACAAAGGTTCGATTACGAGA+TGG | + | chr6.4:34365268-34365287 | None:intergenic | 40.0% | |
| ACCAGTTCAGTGAGTAGAAA+AGG | + | chr6.4:34365310-34365329 | None:intergenic | 40.0% | |
| AGACTTCTCTACTGCAAATC+AGG | - | chr6.4:34365073-34365092 | MS.gene92602:intron | 40.0% | |
| ATAGAGAGATAGAGTGAGGA+GGG | + | chr6.4:34364332-34364351 | None:intergenic | 40.0% | |
| ATTTGGGGAAAAAGAGAGAG+AGG | + | chr6.4:34364636-34364655 | None:intergenic | 40.0% | |
| CCAGTTCAGTGAGTAGAAAA+GGG | + | chr6.4:34365309-34365328 | None:intergenic | 40.0% | |
| GAACCAACAAGTGGTAATAC+CGG | - | chr6.4:34366319-34366338 | MS.gene92602:intron | 40.0% | |
| GACTTCTCTACTGCAAATCA+GGG | - | chr6.4:34365074-34365093 | MS.gene92602:intron | 40.0% | |
| GTAGCAGCAAGTTGTGAAAA+AGG | + | chr6.4:34365053-34365072 | None:intergenic | 40.0% | |
| TGTTAGCAGATAGAATTGGG+CGG | + | chr6.4:34364923-34364942 | None:intergenic | 40.0% | |
| TTTGGGGAAAAAGAGAGAGA+GGG | + | chr6.4:34364635-34364654 | None:intergenic | 40.0% | |
| ! | AGGGTTTTTCGCCATGAATA+TGG | - | chr6.4:34365093-34365112 | MS.gene92602:intron | 40.0% |
| ! | GCTGTTAATTGGAAAGGCAT+TGG | - | chr6.4:34365713-34365732 | MS.gene92602:intron | 40.0% |
| !! | CACGTTCTTCTTGCTTTTCA+AGG | - | chr6.4:34365004-34365023 | MS.gene92602:intron | 40.0% |
| !! | TACCACTTGTTGGTTCAATG+AGG | + | chr6.4:34366315-34366334 | None:intergenic | 40.0% |
| !!! | AGTTTTGGAACTCTCATTGG+AGG | - | chr6.4:34365776-34365795 | MS.gene92602:intron | 40.0% |
| AAGGTTCGATTACGAGATGG+AGG | + | chr6.4:34365265-34365284 | None:intergenic | 45.0% | |
| ACAAGTGGTAATACCGGCAT+AGG | - | chr6.4:34366325-34366344 | MS.gene92602:intron | 45.0% | |
| AGTGAGAAGAGAAAGCAGAG+TGG | + | chr6.4:34364892-34364911 | None:intergenic | 45.0% | |
| ATGCCGGTATTACCACTTGT+TGG | + | chr6.4:34366325-34366344 | None:intergenic | 45.0% | |
| CAATTTGACCAAGCTAGCAG+AGG | - | chr6.4:34366139-34366158 | MS.gene92602:intron | 45.0% | |
| CGGAGTAAACGGAATCTCAA+CGG | + | chr6.4:34365747-34365766 | None:intergenic | 45.0% | |
| CTTGAAGGCTAATCCTATGC+CGG | + | chr6.4:34366341-34366360 | None:intergenic | 45.0% | |
| GCCCAATTCTATCTGCTAAC+AGG | - | chr6.4:34364922-34364941 | MS.gene92602:CDS | 45.0% | |
| GTCCTCATTGAACCAACAAG+TGG | - | chr6.4:34366310-34366329 | MS.gene92602:intron | 45.0% | |
| TAGAGGAAGAATAAGGAGGG+AGG | + | chr6.4:34364443-34364462 | None:intergenic | 45.0% | |
| TTGGGGAAAAAGAGAGAGAG+GGG | + | chr6.4:34364634-34364653 | None:intergenic | 45.0% | |
| ! | CCCTTTTCTACTCACTGAAC+TGG | - | chr6.4:34365306-34365325 | MS.gene92602:intron | 45.0% |
| ! | CTCTGCTAGCTTGGTCAAAT+TGG | + | chr6.4:34366141-34366160 | None:intergenic | 45.0% |
| ! | GCTTGTGCTTGCTGAAAGTT+TGG | - | chr6.4:34366094-34366113 | MS.gene92602:intron | 45.0% |
| !! | AGGATTAGCCTTCAAGGAAG+CGG | - | chr6.4:34366345-34366364 | MS.gene92602:intron | 45.0% |
| !! | TGTTGCTTTGCGCGTGTATT+TGG | + | chr6.4:34364734-34364753 | None:intergenic | 45.0% |
| AGTTACCTCCTCTGCTAGCT+TGG | + | chr6.4:34366150-34366169 | None:intergenic | 50.0% | |
| GTTCCAAAACTCTTGGCACG+CGG | + | chr6.4:34365767-34365786 | None:intergenic | 50.0% | |
| TGGGGAAAAAGAGAGAGAGG+GGG | + | chr6.4:34364633-34364652 | None:intergenic | 50.0% | |
| TTGGAGGAAGCTCGTCAACT+TGG | - | chr6.4:34365792-34365811 | MS.gene92602:intron | 50.0% | |
| TTTGACCAAGCTAGCAGAGG+AGG | - | chr6.4:34366142-34366161 | MS.gene92602:intron | 50.0% | |
| !! | CATCACCGCAAAAGCACTTC+TGG | + | chr6.4:34364857-34364876 | None:intergenic | 50.0% |
| !! | CGGCATAGGATTAGCCTTCA+AGG | - | chr6.4:34366339-34366358 | MS.gene92602:intron | 50.0% |
| !!! | CAGAAGTGCTTTTGCGGTGA+TGG | - | chr6.4:34364855-34364874 | MS.gene92602:CDS | 50.0% |
| AAGAGAGAGAGGGGGATCGA+AGG | + | chr6.4:34364625-34364644 | None:intergenic | 55.0% | |
| ACGTTCAACTCTGCCTGCGA+CGG | - | chr6.4:34364809-34364828 | MS.gene92602:intron | 55.0% | |
| CTCTTGGCACGCGGAGTAAA+CGG | + | chr6.4:34365758-34365777 | None:intergenic | 55.0% | |
| GAGAGATAGAGTGAGGAGGG+AGG | + | chr6.4:34364329-34364348 | None:intergenic | 55.0% | |
| ! | ACTCCGCGTGCCAAGAGTTT+TGG | - | chr6.4:34365761-34365780 | MS.gene92602:intron | 55.0% |
| !! | ACCGCAAAAGCACTTCTGGC+CGG | + | chr6.4:34364853-34364872 | None:intergenic | 55.0% |
| ACCCTTGGCCGCTTCCTTGA+AGG | + | chr6.4:34366356-34366375 | None:intergenic | 60.0% | |
| AGCCTTCAAGGAAGCGGCCA+AGG | - | chr6.4:34366351-34366370 | MS.gene92602:intron | 60.0% | |
| GCCTTCAAGGAAGCGGCCAA+GGG | - | chr6.4:34366352-34366371 | MS.gene92602:intron | 60.0% | |
| GCGCTACCTCTTCATGCAGC+CGG | - | chr6.4:34364831-34364850 | MS.gene92602:intron | 60.0% | |
| TTCTGGCCGGCTGCATGAAG+AGG | + | chr6.4:34364840-34364859 | None:intergenic | 60.0% | |
| !!! | GCCGGCCAGAAGTGCTTTTG+CGG | - | chr6.4:34364849-34364868 | MS.gene92602:CDS | 60.0% |
| TGAAGAGGTAGCGCCGTCGC+AGG | + | chr6.4:34364825-34364844 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 34364189 | 34366471 | 34364189 | ID=MS.gene92602 |
| chr6.4 | mRNA | 34364189 | 34366471 | 34364189 | ID=MS.gene92602.t1;Parent=MS.gene92602 |
| chr6.4 | exon | 34366451 | 34366471 | 34366451 | ID=MS.gene92602.t1.exon1;Parent=MS.gene92602.t1 |
| chr6.4 | CDS | 34366451 | 34366471 | 34366451 | ID=cds.MS.gene92602.t1;Parent=MS.gene92602.t1 |
| chr6.4 | exon | 34364847 | 34364986 | 34364847 | ID=MS.gene92602.t1.exon2;Parent=MS.gene92602.t1 |
| chr6.4 | CDS | 34364847 | 34364986 | 34364847 | ID=cds.MS.gene92602.t1;Parent=MS.gene92602.t1 |
| chr6.4 | exon | 34364497 | 34364548 | 34364497 | ID=MS.gene92602.t1.exon3;Parent=MS.gene92602.t1 |
| chr6.4 | CDS | 34364497 | 34364548 | 34364497 | ID=cds.MS.gene92602.t1;Parent=MS.gene92602.t1 |
| chr6.4 | exon | 34364189 | 34364407 | 34364189 | ID=MS.gene92602.t1.exon4;Parent=MS.gene92602.t1 |
| chr6.4 | CDS | 34364189 | 34364407 | 34364189 | ID=cds.MS.gene92602.t1;Parent=MS.gene92602.t1 |
| Gene Sequence |
| Protein sequence |
