AlfalfaGEDB | MS.gene92810

M. sativa cultivar XinJiangDaYe / MS.gene92810

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0048037 GO:0050662
PFAM: PF01370.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92810.t1	XP_003623714.1	92.7	329	20	1	1	325	1	329	7.30E-174	619.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92810.t1	Q40316	67.5	326	105	1	1	325	1	326	1.0e-128	461.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92810.t1	G7KZB6	92.7	329	20	1	1	325	1	329	5.3e-174	619.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056511	MS.gene92810	0.815345	9.70E-52	-1.69E-46
MS.gene057749	MS.gene92810	0.805034	1.62E-49	-1.69E-46
MS.gene05886	MS.gene92810	0.825681	4.10E-54	-1.69E-46
MS.gene059420	MS.gene92810	0.806561	7.75E-50	-1.69E-46

Showing 1 to 4 of 4 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene028567	MS.gene92810	PPI
MS.gene071401	MS.gene92810	PPI
MS.gene92810	MS.gene40148	PPI
MS.gene92810	MS.gene071398	PPI
MS.gene92810	MS.gene006771	PPI
MS.gene92810	MS.gene56554	PPI
MS.gene92810	MS.gene96808	PPI
MS.gene92810	MS.gene40154	PPI
MS.gene92810	MS.gene031525	PPI

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92810.t1	MTR_7g074820	92.705	329	20	1	1	325	1	329	0.0	626
MS.gene92810.t1	MTR_7g074850	87.538	329	37	1	1	325	1	329	0.0	596
MS.gene92810.t1	MTR_7g074730	85.671	328	44	1	1	325	1	328	0.0	581
MS.gene92810.t1	MTR_7g074880	75.153	326	80	1	1	325	1	326	0.0	519
MS.gene92810.t1	MTR_7g074710	67.073	328	103	2	1	325	1	326	5.43e-166	465
MS.gene92810.t1	MTR_7g074870	71.930	285	79	1	42	325	4	288	3.07e-151	426
MS.gene92810.t1	MTR_4g023730	48.328	329	166	3	1	325	1	329	2.45e-103	306
MS.gene92810.t1	MTR_1g022440	47.077	325	158	4	8	325	8	325	7.81e-102	303
MS.gene92810.t1	MTR_1g022445	47.692	325	156	4	8	325	8	325	2.23e-97	291
MS.gene92810.t1	MTR_4g092080	41.818	330	177	6	5	323	11	336	5.11e-79	244

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92810.t1	AT2G45400	50.610	328	153	5	6	325	38	364	2.05e-102	305
MS.gene92810.t1	AT5G42800	49.695	328	159	4	1	325	1	325	5.43e-102	305
MS.gene92810.t1	AT2G45400	51.786	280	127	4	6	277	38	317	1.22e-91	276
MS.gene92810.t1	AT2G45400	49.315	292	140	4	41	325	17	307	2.06e-84	257
MS.gene92810.t1	AT4G35420	40.729	329	183	7	1	325	1	321	3.13e-79	244
MS.gene92810.t1	AT1G61720	39.339	333	187	6	4	325	9	337	1.50e-75	236
MS.gene92810.t1	AT2G45400	54.167	216	93	3	6	215	38	253	2.57e-71	222
MS.gene92810.t1	AT1G68540	38.199	322	187	8	10	325	6	321	8.77e-59	192
MS.gene92810.t1	AT1G09480	37.994	329	193	8	1	325	1	322	2.97e-58	191
MS.gene92810.t1	AT1G51410	34.557	327	203	8	3	325	4	323	7.60e-58	189

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Find 67 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGAAGAAGAGGTAA+TGG	0.474396	7.4:-30436310	MS.gene92810:CDS
AAAGGAAGAGTTTGTGTGAC+TGG	0.438296	7.4:-30438153	MS.gene92810:CDS
AAAGGTCCAACAACAAAAGT+TGG	0.534220	7.4:+30436147	None:intergenic
AATCAACTGGAGTAGCTGTG+TGG	0.682421	7.4:+30436469	None:intergenic
AATTCCTAATGCTCCATCAA+TGG	0.462695	7.4:+30436407	None:intergenic
AATTGAATGTTGCAAGGAAA+AGG	0.371801	7.4:-30435553	MS.gene92810:CDS
ACACACAGCAGAAGCACTTG+AGG	0.617963	7.4:+30436338	None:intergenic
ACAGCATATGACCAAGCAAA+AGG	0.516501	7.4:+30436243	None:intergenic
ACCACTGTTAGATCTAATCC+AGG	0.585583	7.4:-30438066	MS.gene92810:intron
ACCTGGATTAGATCTAACAG+TGG	0.730654	7.4:+30438065	None:intergenic

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGAAGAAGAGGTAA+TGG	-	chr7.4:30437397-30437416	MS.gene92810:intron	30.0%
AAACTATATGTGTGCAACAA+AGG	-	chr7.4:30436206-30436225	MS.gene92810:CDS	30.0%
AATTGAATGTTGCAAGGAAA+AGG	-	chr7.4:30438154-30438173	MS.gene92810:CDS	30.0%
ACAATAATCCAAGAACCAAT+GGG	+	chr7.4:30437667-30437686	None:intergenic	30.0%
AGCGAAATTATACAAATTGC+AGG	-	chr7.4:30437089-30437108	MS.gene92810:intron	30.0%
ATTCTCATCCCTATATTCTT+AGG	-	chr7.4:30436967-30436986	MS.gene92810:intron	30.0%
ATTGAATGTTGCAAGGAAAA+GGG	-	chr7.4:30438155-30438174	MS.gene92810:CDS	30.0%
CTTACATATCTATCGTTACA+TGG	+	chr7.4:30437071-30437090	None:intergenic	30.0%
GATCCAAAAAATTTGAAGAC+AGG	+	chr7.4:30436928-30436947	None:intergenic	30.0%
GCGAAATTATACAAATTGCA+GGG	-	chr7.4:30437090-30437109	MS.gene92810:intron	30.0%

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	30435542	30438187	30435542	ID=MS.gene92810
chr7.4	mRNA	30435542	30438187	30435542	ID=MS.gene92810.t1;Parent=MS.gene92810
chr7.4	exon	30438067	30438187	30438067	ID=MS.gene92810.t1.exon1;Parent=MS.gene92810.t1
chr7.4	CDS	30438067	30438187	30438067	ID=cds.MS.gene92810.t1;Parent=MS.gene92810.t1
chr7.4	exon	30436094	30436618	30436094	ID=MS.gene92810.t1.exon2;Parent=MS.gene92810.t1
chr7.4	CDS	30436094	30436618	30436094	ID=cds.MS.gene92810.t1;Parent=MS.gene92810.t1
chr7.4	exon	30435773	30435962	30435773	ID=MS.gene92810.t1.exon3;Parent=MS.gene92810.t1
chr7.4	CDS	30435773	30435962	30435773	ID=cds.MS.gene92810.t1;Parent=MS.gene92810.t1
chr7.4	exon	30435542	30435683	30435542	ID=MS.gene92810.t1.exon4;Parent=MS.gene92810.t1
chr7.4	CDS	30435542	30435683	30435542	ID=cds.MS.gene92810.t1;Parent=MS.gene92810.t1

Gene Sequence

>MS.gene92810

ATGCAAGAAGGGAAAGGAAGAGTTTGTGTGACTGGAGGTACAGGGTTTATTGGTTCATGGATTATCAAGAGACTCCTTGAAGATGGTTATGCTGTTAATACCACTGTTAGATCTAATCCAGGTAACCCCTTAATTCAAATGTTGTTGTTGAATCTTGATTATATATTATGTAACCAAAAAAAAAATTTAAATTATATTATTTATTTTTCATATTTTTAAGTATCTAATTTGAATTAAGCTGTACATAATATTGTTAAATTAATTCTTCTTAAAAAAAATATATATATTCTACTTCGATTAGAAAAGGTTAATGTACCCGGAGAAAATAGAGAGAAAACATATGTCCCTAAAAAACATTTGAACTACTTTTATGAATTAACAAAGAAAACATAAAAATAGAGTAAAAAATAGAATATAATAATATTTAATTTTGTTTTTAGTCCTTCTAAAATTTTGTTTTAGATAAAAATTAATAGTGTAAAAATCTAATATAATGGTTTGAATCTTGAACATTTATTCTAATCATAACTTTTCGTTGTGGCTCAACTCATCATCTAAATTGTCTAATTTCGACACGAAGATGATTAGGGAATGTATATTGTATTTTTTATACAAACTTTTATAATATATTGTTGTGAATTCAAACAAATAAATCACATCAATAAAACTATATGTGTGCAACAAAGGAAGTAGTATAATCAATGAACAAAGTAGCCTTAAGCAACAATAACAACAAACAAACTTAGATCTAAGTGTGAAGCAACACTACAAACATATTCAAAGCAACAAAGATAAGAAAGAAGAAAAAGAAAACACATAAATATTGTTTATCCAGTTCGGTCCAATAAGACATACTCTAGGGAGAAAACAACTCTCCGATCCACTATGATAAAGAGTGATACAAGTAGATTACAAGAAATTAAATTACAAGCTTACAAGTCACCCACACTCACAATGAATCCTTAGAGAAAACACTAAATGAAGTTTTTTGATCATTCCTCTTGAGATCTCACTACCCAAGGTGTTTACAAATATTTCTCAACCCAAGAAAAAACTCTCACCAAAGACACCTAGTCCTAAAGTTCCCTCCTTTGGTTTTCCTATCTCTTGAAGCTCCCTAAAAAAATGAAGAATTGAAGCATTATATAGTACCTAGAATATCCTGAGAAATCGTTCCACGATTGGCACCCATCGTGCCACGATTTGTTGTTGGTACACCAATACAGTACTAACTTTATCTCTTAATCGTGCCACAATTTCATGCATAGGTGTCACGATATTTCCAATAGCAAACTCCGAGGAAAAGAATCAAAATCGTGCCACAATTTTTCTAGAACTTCAACATCCAATTTTGAGCCAAATTTCAACATATAAAATCTCGCCCCTGTCTTCAAATTTTTTGGATCCGTTCCTGGTCAAACACATATTCTCATCCCTATATTCTTAGGTTGTTTTGTCAACCTCTTAACTAAAATTCAAATCACGTGCCAATTTTTTTTATTTGTTGTTATTAATATTATTGTTTTCCATGTAACGATAGATATGTAAGCGAAATTATACAAATTGCAGGGCAAAAGAAAGATGTTAGCTTCCTCACAGATCTTCCAAATGCAACCCAAAAGCTAAATATTTTCAATGCTGATCTTAGCAACCCAGAAAGTTTCAATGCAGCAATTGAAGGGTGCATTGGAGTATTCCACACAGCTACTCCAGTTGATTTCGAACTGAAAGAACCAGAGGAAATTGTGATAAAAAGAACCATTGATGGAGCATTAGGAATTCTAAAAGCATGCAAAAATTCAAAGACAGTGAAAAGAGTTATTTACACCTCAAGTGCTTCTGCTGTGTGTATGCAAAACAAAGAAGAAGAGGTAATGGATGAAAGTTATTGGAGTGATGTGAATATTCTTAGAACTTTGAAGCCTTTTGCTTGGTCATATGCTGTTTCTAAGACACTAGCTGAGAAAGCTGTTCTTGAATTTGGAGAACAACATGGTTTGGATATTGTGACTCTAATACCAACTTTTGTTGTTGGACCTTTCATTTGTCCTAAGCTACCTGGATCTGTCCATAGTTCACCAGCTTTCTTATTTGGTAAGTGAAGTTTCTTCTTACCATGTTTCCCATTGGTTCTTGGATTATTGTGAAAGTATTTTCTTGATTGTTTATTTCTTAAATTGATAAAAATTAACAAATGGAATTTGCATGCAGATGATATTGACAAGAATCCATTAGTGCTTTTGTATCTCGTACCGGTATGGTGCATGTTGATGATGTGGCTAGAGCACATATATTCTTACTTGAACATCCTAATCCAAAAGGGAGATATAATTGCTCACCATTCATTGCAACTATTGAAGAAATAGTTGACCTTGTTTCTTCCAAGTATCCTGAACTTCAAATGCCAACATCCAAGTGAGTTCTACAAATTAATTAGTTACATTAATTTTTGTGAGCTTTCTTTTGTTGTTACTAATATTATTCAATGTATTTTCATCTTCTAGAGAGCTTATGGGAGTTAAAGGTCCTAAGTTTCCACATTTAACCTCAAAGAAACTCGTGGATGATGGATTCATGTTCAAGTATAGCCTTGAGGGAATGTTTGAGGACGCAATTGAATGTTGCAAGGAAAAGGGTTATCTTTGA

Protein sequence

>MS.gene92810.t1

MQEGKGRVCVTGGTGFIGSWIIKRLLEDGYAVNTTVRSNPGQKKDVSFLTDLPNATQKLNIFNADLSNPESFNAAIEGCIGVFHTATPVDFELKEPEEIVIKRTIDGALGILKACKNSKTVKRVIYTSSASAVCMQNKEEEVMDESYWSDVNILRTLKPFAWSYAVSKTLAEKAVLEFGEQHGLDIVTLIPTFVVGPFICPKLPGSVHSSPAFLFESISAFVSRTGMVHVDDVARAHIFLLEHPNPKGRYNCSPFIATIEEIVDLVSSKYPELQMPTSKELMGVKGPKFPHLTSKKLVDDGFMFKYSLEGMFEDAIECCKEKGYL