Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93017.t1 | XP_013446277.1 | 97.6 | 985 | 21 | 1 | 1 | 985 | 1 | 982 | 0.00E+00 | 1964.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93017.t1 | Q94F87 | 53.2 | 921 | 402 | 12 | 63 | 970 | 385 | 1289 | 4.1e-265 | 916.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93017.t1 | A0A072TS09 | 97.6 | 985 | 21 | 1 | 1 | 985 | 1 | 982 | 0.0e+00 | 1964.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene93017 | 0.820476 | 6.72E-53 | -1.69E-46 |
| MS.gene051914 | MS.gene93017 | 0.813723 | 2.22E-51 | -1.69E-46 |
| MS.gene052143 | MS.gene93017 | 0.823614 | 1.26E-53 | -1.69E-46 |
| MS.gene052169 | MS.gene93017 | 0.803676 | 3.11E-49 | -1.69E-46 |
| MS.gene052308 | MS.gene93017 | 0.80636 | 8.54E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene93017 | 0.839728 | 1.33E-57 | -1.69E-46 |
| MS.gene053173 | MS.gene93017 | 0.830631 | 2.63E-55 | -1.69E-46 |
| MS.gene054551 | MS.gene93017 | 0.808406 | 3.15E-50 | -1.69E-46 |
| MS.gene054593 | MS.gene93017 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene054633 | MS.gene93017 | 0.845624 | 3.61E-59 | -1.69E-46 |
| MS.gene054662 | MS.gene93017 | 0.812814 | 3.51E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene93017 | 0.804188 | 2.44E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene93017 | 0.81002 | 1.42E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene93017 | -0.804765 | 1.85E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene93017 | 0.814948 | 1.19E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene93017 | 0.864916 | 8.62E-65 | -1.69E-46 |
| MS.gene056528 | MS.gene93017 | 0.817395 | 3.37E-52 | -1.69E-46 |
| MS.gene05652 | MS.gene93017 | 0.802609 | 5.17E-49 | -1.69E-46 |
| MS.gene05732 | MS.gene93017 | 0.832558 | 8.83E-56 | -1.69E-46 |
| MS.gene057458 | MS.gene93017 | 0.805798 | 1.12E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene93017 | 0.804313 | 2.29E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene93017 | 0.822193 | 2.70E-53 | -1.69E-46 |
| MS.gene060565 | MS.gene93017 | 0.808978 | 2.37E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene93017 | 0.863091 | 3.19E-64 | -1.69E-46 |
| MS.gene061260 | MS.gene93017 | 0.838919 | 2.16E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93017.t1 | MTR_8g071100 | 97.140 | 1014 | 26 | 1 | 1 | 1014 | 1 | 1011 | 0.0 | 2055 |
| MS.gene93017.t1 | MTR_6g084890 | 50.189 | 795 | 367 | 9 | 175 | 962 | 46 | 818 | 0.0 | 792 |
| MS.gene93017.t1 | MTR_5g023660 | 50.189 | 795 | 367 | 9 | 175 | 962 | 47 | 819 | 0.0 | 789 |
| MS.gene93017.t1 | MTR_5g023660 | 50.631 | 792 | 363 | 10 | 175 | 962 | 47 | 814 | 0.0 | 787 |
| MS.gene93017.t1 | MTR_7g007090 | 49.874 | 792 | 369 | 10 | 175 | 962 | 43 | 810 | 0.0 | 773 |
| MS.gene93017.t1 | MTR_4g017850 | 49.294 | 779 | 368 | 8 | 197 | 962 | 62 | 826 | 0.0 | 772 |
| MS.gene93017.t1 | MTR_6g088715 | 49.168 | 781 | 372 | 12 | 197 | 962 | 146 | 916 | 0.0 | 758 |
| MS.gene93017.t1 | MTR_6g037900 | 46.402 | 806 | 396 | 7 | 173 | 962 | 41 | 826 | 0.0 | 740 |
| MS.gene93017.t1 | MTR_5g066780 | 41.299 | 770 | 336 | 13 | 197 | 962 | 123 | 780 | 0.0 | 555 |
| MS.gene93017.t1 | MTR_2g046020 | 37.433 | 374 | 187 | 9 | 580 | 942 | 1232 | 1569 | 8.43e-65 | 241 |
| MS.gene93017.t1 | MTR_6g065580 | 38.259 | 379 | 177 | 11 | 580 | 942 | 1206 | 1543 | 1.53e-64 | 240 |
| MS.gene93017.t1 | MTR_5g066830 | 53.179 | 173 | 80 | 1 | 790 | 962 | 1 | 172 | 7.41e-52 | 181 |
| MS.gene93017.t1 | MTR_8g062550 | 31.358 | 405 | 194 | 9 | 276 | 667 | 49 | 382 | 1.64e-49 | 181 |
| MS.gene93017.t1 | MTR_7g047650 | 54.545 | 165 | 48 | 5 | 356 | 520 | 1 | 138 | 2.98e-42 | 151 |
| MS.gene93017.t1 | MTR_2g054840 | 76.667 | 90 | 21 | 0 | 693 | 782 | 13 | 102 | 7.16e-41 | 148 |
| MS.gene93017.t1 | MTR_7g451840 | 63.000 | 100 | 15 | 1 | 421 | 520 | 1 | 78 | 1.91e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93017.t1 | AT4G19020 | 55.298 | 906 | 377 | 11 | 78 | 970 | 351 | 1241 | 0.0 | 986 |
| MS.gene93017.t1 | AT4G19020 | 55.298 | 906 | 377 | 11 | 78 | 970 | 399 | 1289 | 0.0 | 986 |
| MS.gene93017.t1 | AT1G69770 | 47.535 | 791 | 391 | 13 | 192 | 964 | 45 | 829 | 0.0 | 726 |
| MS.gene93017.t1 | AT1G80740 | 44.629 | 782 | 398 | 12 | 197 | 962 | 19 | 781 | 0.0 | 657 |
| MS.gene93017.t1 | AT4G14140 | 36.883 | 385 | 208 | 8 | 576 | 955 | 1164 | 1518 | 6.21e-61 | 229 |
| MS.gene93017.t1 | AT4G14140 | 36.883 | 385 | 208 | 8 | 576 | 955 | 1164 | 1518 | 6.21e-61 | 229 |
| MS.gene93017.t1 | AT4G14140 | 36.883 | 385 | 208 | 8 | 576 | 955 | 1190 | 1544 | 1.02e-60 | 228 |
| MS.gene93017.t1 | AT4G08990 | 36.104 | 385 | 211 | 8 | 576 | 955 | 1157 | 1511 | 6.68e-59 | 223 |
| MS.gene93017.t1 | AT5G49160 | 36.480 | 392 | 200 | 10 | 576 | 955 | 1091 | 1445 | 5.33e-58 | 219 |
| MS.gene93017.t1 | AT5G49160 | 36.480 | 392 | 200 | 10 | 576 | 955 | 1179 | 1533 | 6.63e-58 | 219 |
| MS.gene93017.t1 | AT4G13610 | 34.574 | 376 | 191 | 9 | 576 | 942 | 1066 | 1395 | 6.78e-55 | 210 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTTTGAAATTCTGTTTC+TGG | 0.122674 | 8.2:+32168390 | None:intergenic |
| AACACTGACTTTCTCTATTA+TGG | 0.156137 | 8.2:+32173932 | None:intergenic |
| AAGATTAACTGATGATATTT+TGG | 0.166590 | 8.2:+32173042 | None:intergenic |
| ACTTGATAATTGAACATAAT+TGG | 0.167538 | 8.2:+32166279 | None:intergenic |
| CAACATCTTTCGACTCAAAA+AGG | 0.205013 | 8.2:+32165906 | None:intergenic |
| TTTGCCTCGTCTGTGTTAAA+AGG | 0.230458 | 8.2:-32176420 | MS.gene93017:CDS |
| ATTCTGTTTCTGGAGGATTT+TGG | 0.290409 | 8.2:+32168400 | None:intergenic |
| ATTTGCAGGTACCGTCAAAT+TGG | 0.295665 | 8.2:-32166415 | MS.gene93017:intron |
| GGCTGTGGTGGCATGTCAAC+TGG | 0.307159 | 8.2:-32173079 | MS.gene93017:CDS |
| TCCCCAACCTGGTTTGAAAA+TGG | 0.308068 | 8.2:-32176462 | MS.gene93017:CDS |
| GCATTACTAGATCTTTATTC+TGG | 0.309643 | 8.2:-32173100 | MS.gene93017:CDS |
| GCAAATTTCCGTGATCTTCC+TGG | 0.312346 | 8.2:-32167805 | MS.gene93017:CDS |
| GTACCTGTTTCGCGAGCTTT+AGG | 0.319919 | 8.2:-32166379 | MS.gene93017:CDS |
| CTCTTCTTCTTGTTCTGTTA+AGG | 0.324484 | 8.2:-32178404 | MS.gene93017:intron |
| ATCTGACTTCTATTATGATA+TGG | 0.329852 | 8.2:-32173715 | MS.gene93017:CDS |
| GTGACTGGATCCACATTAAA+TGG | 0.335651 | 8.2:-32168000 | MS.gene93017:CDS |
| CGAGCTTCATCATCAGGTAT+TGG | 0.348388 | 8.2:+32176309 | None:intergenic |
| CAATGATAGCTTGGGCATAA+TGG | 0.349422 | 8.2:+32175848 | None:intergenic |
| ATTGTTGCAGCTGGCTGTTA+TGG | 0.353868 | 8.2:-32171038 | MS.gene93017:CDS |
| CGACGGTCACCGAGATTATC+AGG | 0.354435 | 8.2:-32178445 | MS.gene93017:CDS |
| TCATAAGTGAAGCAGTAATC+TGG | 0.356456 | 8.2:+32167119 | None:intergenic |
| CATGTGATGGCAATGGAAAT+TGG | 0.367105 | 8.2:+32168880 | None:intergenic |
| CCAGAATACAACCTTCCGTT+TGG | 0.368824 | 8.2:+32167894 | None:intergenic |
| TTACTGCTTCACTTATGAAC+AGG | 0.369696 | 8.2:-32167114 | MS.gene93017:CDS |
| ATCTTTCGACTCAAGAATAA+TGG | 0.374522 | 8.2:+32165943 | None:intergenic |
| ATTAGACAATTCAATGGAAA+TGG | 0.381056 | 8.2:+32176557 | None:intergenic |
| CATGCATTACCAAGCAAGAT+TGG | 0.381163 | 8.2:-32171063 | MS.gene93017:CDS |
| CGAAGAACTCGATCTTCAAA+TGG | 0.381384 | 8.2:-32176666 | MS.gene93017:CDS |
| GTGCGTTCTAACGGAAAATC+TGG | 0.382316 | 8.2:-32178517 | MS.gene93017:CDS |
| GCTTTCTATGTGCAATTCCT+AGG | 0.385806 | 8.2:+32166350 | None:intergenic |
| CATGATAATCACCTTCATCT+TGG | 0.386394 | 8.2:+32174006 | None:intergenic |
| CTTCCTCTACTTCTCGTTGT+TGG | 0.388683 | 8.2:+32168712 | None:intergenic |
| CTGGCCTCCGCCTGAGTTTG+AGG | 0.391425 | 8.2:-32168841 | MS.gene93017:intron |
| CAGTTTATATCGTCAACTTC+AGG | 0.391923 | 8.2:+32176513 | None:intergenic |
| GATCTTCCTGGAATTGTTGT+AGG | 0.393166 | 8.2:-32167793 | MS.gene93017:CDS |
| GTTCTGTGCAACTCAGGATT+AGG | 0.394943 | 8.2:+32173130 | None:intergenic |
| CAATTGTAAGGAAAGCTTGC+AGG | 0.400096 | 8.2:-32171448 | MS.gene93017:CDS |
| ATGTGATGGCAATGGAAATT+GGG | 0.404250 | 8.2:+32168881 | None:intergenic |
| CTTGAGTCGACAGATGTTTG+TGG | 0.405632 | 8.2:-32166001 | MS.gene93017:CDS |
| GGTGAAGTTGATGTTGTTTG+TGG | 0.406349 | 8.2:-32171293 | MS.gene93017:CDS |
| TTGTACCTGCAGCAATTGTA+AGG | 0.407342 | 8.2:-32171460 | MS.gene93017:intron |
| GTGGTGTCGCCAACATCTTT+TGG | 0.408693 | 8.2:+32166094 | None:intergenic |
| GTGGTGTCGCCAACATCTTT+TGG | 0.408693 | 8.2:+32166193 | None:intergenic |
| TCACTCGGAAGATATGCTTT+AGG | 0.410341 | 8.2:-32171098 | MS.gene93017:CDS |
| CATTATGCCCAAGCTATCAT+TGG | 0.412310 | 8.2:-32175847 | MS.gene93017:CDS |
| TATCCTAAAGCTCGCGAAAC+AGG | 0.412823 | 8.2:+32166376 | None:intergenic |
| TCAGATCCTACAACAATTCC+AGG | 0.414573 | 8.2:+32167787 | None:intergenic |
| GCGATCTCCGGTGGTGAAAT+CGG | 0.414986 | 8.2:-32178566 | MS.gene93017:CDS |
| AGAAACATTCCGTCATTCAT+TGG | 0.417690 | 8.2:-32176336 | MS.gene93017:CDS |
| ATGATGTTATTATGAGATAC+TGG | 0.419849 | 8.2:-32168860 | MS.gene93017:CDS |
| GCACATTTATGTAGGCCATT+TGG | 0.420365 | 8.2:-32167005 | MS.gene93017:intron |
| TCAACGAAAGGATGTATGTA+TGG | 0.420595 | 8.2:-32176360 | MS.gene93017:CDS |
| GGACTTTCTGCAACTATTGA+AGG | 0.421232 | 8.2:-32172737 | MS.gene93017:CDS |
| TGTCCATGAAAACTACTATC+TGG | 0.421252 | 8.2:+32171192 | None:intergenic |
| CAGAATACAACCTTCCGTTT+GGG | 0.421706 | 8.2:+32167895 | None:intergenic |
| CTAGATCTTTATTCTGGCTG+TGG | 0.426164 | 8.2:-32173094 | MS.gene93017:CDS |
| CTTGCAGGTTGGTCAGAAGT+TGG | 0.431528 | 8.2:-32173751 | MS.gene93017:intron |
| GGTTTACTTAATACCTCATC+AGG | 0.431733 | 8.2:+32170972 | None:intergenic |
| TTCTCCATTAAAACATACTT+AGG | 0.434823 | 8.2:+32171152 | None:intergenic |
| AAAATTCCATTGCTACCATC+TGG | 0.440552 | 8.2:-32167736 | MS.gene93017:CDS |
| ATGTCAACTGGACTGTGCTT+AGG | 0.440967 | 8.2:-32173067 | MS.gene93017:CDS |
| AAACTGCTCAGCACTGTCTC+TGG | 0.441731 | 8.2:-32176496 | MS.gene93017:CDS |
| TGCAGTTCCCAATGATAGCT+TGG | 0.446946 | 8.2:+32175839 | None:intergenic |
| CCTCCTTGTCAAGGAATTAG+TGG | 0.449857 | 8.2:-32171266 | MS.gene93017:CDS |
| CAACTGCATTTCCAATTTGA+CGG | 0.453435 | 8.2:+32166404 | None:intergenic |
| CTTTGTTGCTCCATTTAATG+TGG | 0.455519 | 8.2:+32167990 | None:intergenic |
| GACGGCAATGTGCGTTCTAA+CGG | 0.457315 | 8.2:-32178526 | MS.gene93017:CDS |
| CCTGAGTTCCTTGACCGTAA+TGG | 0.460963 | 8.2:+32172661 | None:intergenic |
| AAGATATGCTTTAGGTCGTC+TGG | 0.463034 | 8.2:-32171090 | MS.gene93017:CDS |
| CACTTACATGTGTCTCTGGA+TGG | 0.475331 | 8.2:+32172856 | None:intergenic |
| CTTGAATTCTGTAAAACCAT+TGG | 0.475561 | 8.2:+32174130 | None:intergenic |
| TTTGTGGGTCTGTGAAAGAA+AGG | 0.478244 | 8.2:-32166766 | MS.gene93017:intron |
| CGCTTTCCAGATGGTAGCAA+TGG | 0.479557 | 8.2:+32167730 | None:intergenic |
| CAACAATTCCCAATCTTGCT+TGG | 0.483514 | 8.2:+32171054 | None:intergenic |
| GTGAGGATTCGATCCTGCTC+TGG | 0.484537 | 8.2:+32166836 | None:intergenic |
| ATAATTGGAAAGAGAGAACT+TGG | 0.485222 | 8.2:+32166294 | None:intergenic |
| TCAGCACTTACATGTGTCTC+TGG | 0.486920 | 8.2:+32172852 | None:intergenic |
| GGACAAACAATGTAATGATA+AGG | 0.487894 | 8.2:-32176039 | MS.gene93017:CDS |
| GGGAACCAATTGAAAACTTA+CGG | 0.488212 | 8.2:-32171550 | MS.gene93017:intron |
| AGGACCTGGTTATGACAACT+TGG | 0.489722 | 8.2:+32166939 | None:intergenic |
| TATCAGGTTGTCCAAGATGA+AGG | 0.491300 | 8.2:-32174017 | MS.gene93017:intron |
| ATTTCACCACCGGAGATCGC+TGG | 0.495141 | 8.2:+32178569 | None:intergenic |
| GGGATGGCGTTACGAATTGA+AGG | 0.503722 | 8.2:-32176277 | MS.gene93017:intron |
| TCACCATACGAGAATTTGCC+AGG | 0.505076 | 8.2:-32166817 | MS.gene93017:CDS |
| TCCCACCACAATCGTCCAAA+TGG | 0.505144 | 8.2:+32166990 | None:intergenic |
| AATCTGGAAGGAAGAAAGGT+AGG | 0.505682 | 8.2:-32178501 | MS.gene93017:CDS |
| ATCTTTCGACTCAAGAATAG+TGG | 0.506052 | 8.2:+32166075 | None:intergenic |
| ATCTTTCGACTCAAGAATAG+TGG | 0.506052 | 8.2:+32166174 | None:intergenic |
| ATGCATTACCAAGCAAGATT+GGG | 0.506356 | 8.2:-32171062 | MS.gene93017:CDS |
| ATAAAATTCCATTACGGTCA+AGG | 0.506381 | 8.2:-32172669 | MS.gene93017:CDS |
| GCAGTTCCCAATGATAGCTT+GGG | 0.507597 | 8.2:+32175840 | None:intergenic |
| TCAGGAGAATGTTGTTCCAC+TGG | 0.509174 | 8.2:+32176531 | None:intergenic |
| GGAATTGCACATAGAAAGCT+TGG | 0.509441 | 8.2:-32166346 | MS.gene93017:CDS |
| ACATTCCGTAAAATACCAAC+AGG | 0.512228 | 8.2:-32173672 | MS.gene93017:intron |
| TGCTCTGCTTGAAACACCTC+CGG | 0.516919 | 8.2:+32178604 | None:intergenic |
| AGTCATCTTCAGACATAAAG+AGG | 0.517772 | 8.2:+32167938 | None:intergenic |
| TTCTGTAAAACCATTGGACT+CGG | 0.518680 | 8.2:+32174136 | None:intergenic |
| TGGTGAATTAGACAATTCAA+TGG | 0.521561 | 8.2:+32176551 | None:intergenic |
| GATCTTTATTCTGGCTGTGG+TGG | 0.522192 | 8.2:-32173091 | MS.gene93017:CDS |
| TCAGGCGAATCCGACGGAAG+AGG | 0.522310 | 8.2:-32178427 | MS.gene93017:CDS |
| CTGGTTATGACAACTTGGGC+TGG | 0.522666 | 8.2:+32166944 | None:intergenic |
| CGAGAATTTGCCAGGCTGCA+AGG | 0.523048 | 8.2:-32166809 | MS.gene93017:CDS |
| CATAAGTGAAGCAGTAATCT+GGG | 0.523712 | 8.2:+32167120 | None:intergenic |
| ACGATGAAAGTGAAGATACA+TGG | 0.525406 | 8.2:-32171571 | MS.gene93017:CDS |
| AACATCTGTCGACTCAAGAA+TGG | 0.525543 | 8.2:+32165841 | None:intergenic |
| AGACGAGTCCCAGCGATCTC+CGG | 0.527072 | 8.2:-32178578 | MS.gene93017:CDS |
| AGGATTAATACCTCAAACTC+AGG | 0.528590 | 8.2:+32168831 | None:intergenic |
| GGAAAATCTGGAAGGAAGAA+AGG | 0.531823 | 8.2:-32178505 | MS.gene93017:CDS |
| TAGGATCTGACAATGTGGTT+AGG | 0.533328 | 8.2:-32167774 | MS.gene93017:CDS |
| AAGAGAGAACTTGGGTGGGA+GGG | 0.533881 | 8.2:+32166303 | None:intergenic |
| AACATCTGTCGACTCAAGAA+TGG | 0.534310 | 8.2:+32166006 | None:intergenic |
| ATTCTTGAGTCGAAAGATGT+TGG | 0.535096 | 8.2:-32166070 | MS.gene93017:CDS |
| ATTCTTGAGTCGAAAGATGT+TGG | 0.535096 | 8.2:-32166169 | MS.gene93017:CDS |
| ATCATGAAATCCTTGCAGCC+TGG | 0.537807 | 8.2:+32166799 | None:intergenic |
| GGTTTCTGAGATGAAATTGT+CGG | 0.538728 | 8.2:-32178479 | MS.gene93017:CDS |
| GAAGAACTCGATCTTCAAAT+GGG | 0.539090 | 8.2:-32176665 | MS.gene93017:CDS |
| TTGCAGGAGTTTGTGAGAGA+GGG | 0.539361 | 8.2:-32171432 | MS.gene93017:CDS |
| CTCAGGATTAGGCAGACTCT+TGG | 0.539752 | 8.2:+32173141 | None:intergenic |
| GAAACATGGTCTATATTTGA+AGG | 0.539999 | 8.2:-32172536 | MS.gene93017:intron |
| AGTTCTGTTCTGTGCAACTC+AGG | 0.541008 | 8.2:+32173124 | None:intergenic |
| TGTGGAGGTCCTCCTTGTCA+AGG | 0.543784 | 8.2:-32171275 | MS.gene93017:CDS |
| ATGTAATTCTTACAGGGTGA+AGG | 0.544932 | 8.2:-32174222 | MS.gene93017:intron |
| ATTATGCCCAAGCTATCATT+GGG | 0.545088 | 8.2:-32175846 | MS.gene93017:CDS |
| TGATTTCTTTCATCGTCCAA+TGG | 0.545646 | 8.2:+32171215 | None:intergenic |
| TAGAAACATGGAATCACCAT+TGG | 0.547717 | 8.2:-32171231 | MS.gene93017:CDS |
| CTATGCAAACGGTATAATGT+TGG | 0.548171 | 8.2:-32172703 | MS.gene93017:CDS |
| CATCTCTTTCGTAGGTACAC+TGG | 0.548563 | 8.2:-32171601 | MS.gene93017:intron |
| TTCTGCAACTATTGAAGGAG+TGG | 0.548835 | 8.2:-32172732 | MS.gene93017:CDS |
| AATATTACTACTTACAGGAA+GGG | 0.549097 | 8.2:+32171389 | None:intergenic |
| ATCTGGAAGGAAGAAAGGTA+GGG | 0.549198 | 8.2:-32178500 | MS.gene93017:CDS |
| CTTGCAGGAGTTTGTGAGAG+AGG | 0.549922 | 8.2:-32171433 | MS.gene93017:CDS |
| CAGCCTGGCAAATTCTCGTA+TGG | 0.553269 | 8.2:+32166814 | None:intergenic |
| ATTCTTGAGCCAAAAGATGT+TGG | 0.553563 | 8.2:-32166103 | MS.gene93017:CDS |
| CTTTGAAATTCTGTTTCTGG+AGG | 0.554221 | 8.2:+32168393 | None:intergenic |
| GAGTGACTCTCAAGAACAGC+AGG | 0.554424 | 8.2:+32173184 | None:intergenic |
| TTGGAAAGAGAGAACTTGGG+TGG | 0.556163 | 8.2:+32166298 | None:intergenic |
| AAAGAGAGAACTTGGGTGGG+AGG | 0.557392 | 8.2:+32166302 | None:intergenic |
| CTTGGGCTGGTTAGTGCGGT+AGG | 0.557691 | 8.2:+32166957 | None:intergenic |
| CTTTCTATGTGCAATTCCTA+GGG | 0.557841 | 8.2:+32166351 | None:intergenic |
| CAGCCCAAGTTGTCATAACC+AGG | 0.557854 | 8.2:-32166943 | MS.gene93017:intron |
| AGATTGGGAATTGTTGCAGC+TGG | 0.560569 | 8.2:-32171047 | MS.gene93017:CDS |
| GGCCATTTGGACGATTGTGG+TGG | 0.561308 | 8.2:-32166992 | MS.gene93017:CDS |
| CAACGAAAGGATGTATGTAT+GGG | 0.562242 | 8.2:-32176359 | MS.gene93017:CDS |
| AGGTCACAAACTTTGAAACT+CGG | 0.562284 | 8.2:-32168437 | MS.gene93017:CDS |
| AAAAGTATTTCCGAGTCCAA+TGG | 0.564307 | 8.2:-32174146 | MS.gene93017:CDS |
| GGTAGTAATACATCCAGAGC+AGG | 0.565104 | 8.2:-32166849 | MS.gene93017:CDS |
| GTGTTTGTCAAATTCCCAAA+CGG | 0.565207 | 8.2:-32167909 | MS.gene93017:CDS |
| TTTCACCACCGGAGATCGCT+GGG | 0.565286 | 8.2:+32178570 | None:intergenic |
| AAAACACGCAATCGAAATTG+TGG | 0.566401 | 8.2:+32171011 | None:intergenic |
| ATATTACTACTTACAGGAAG+GGG | 0.567195 | 8.2:+32171390 | None:intergenic |
| GCTCCTTCCGATGTAATTGA+CGG | 0.569443 | 8.2:-32178544 | MS.gene93017:CDS |
| ATAACATCATGTGATGGCAA+TGG | 0.571519 | 8.2:+32168873 | None:intergenic |
| TTGTCAAATTCCCAAACGGA+AGG | 0.571579 | 8.2:-32167905 | MS.gene93017:intron |
| AGATTTGACAAGGGTTCACT+CGG | 0.573156 | 8.2:-32171113 | MS.gene93017:CDS |
| ACGATTGTGGTGGGATGAAA+CGG | 0.575514 | 8.2:-32166982 | MS.gene93017:CDS |
| GCTACCATCTGGAAAGCGAT+TGG | 0.577345 | 8.2:-32167725 | MS.gene93017:intron |
| TCTTTCGTAGGTACACTGGA+AGG | 0.578339 | 8.2:-32171597 | MS.gene93017:intron |
| CTTTCGTAGGTACACTGGAA+GGG | 0.581534 | 8.2:-32171596 | MS.gene93017:intron |
| GAAGTTGATGTTGTTTGTGG+AGG | 0.583024 | 8.2:-32171290 | MS.gene93017:CDS |
| ACGAAATCACATCCCCAACC+TGG | 0.585616 | 8.2:-32176473 | MS.gene93017:CDS |
| GAAGGAGCCGATTTCACCAC+CGG | 0.586073 | 8.2:+32178559 | None:intergenic |
| GACGGAGGAATCGCCGCCGG+AGG | 0.587534 | 8.2:-32178620 | MS.gene93017:CDS |
| TCGGATTCGCCTGATAATCT+CGG | 0.587996 | 8.2:+32178436 | None:intergenic |
| GGTCACAAACTTTGAAACTC+GGG | 0.589954 | 8.2:-32168436 | MS.gene93017:CDS |
| AATGACGGAGGAATCGCCGC+CGG | 0.590099 | 8.2:-32178623 | MS.gene93017:CDS |
| CAATTATCAAGTAATCATGT+CGG | 0.591656 | 8.2:-32166268 | MS.gene93017:CDS |
| AGGATTGTTGATATATGCTA+CGG | 0.592258 | 8.2:-32172577 | MS.gene93017:CDS |
| TTGCCGTCAATTACATCGGA+AGG | 0.592578 | 8.2:+32178541 | None:intergenic |
| GCCATTTGGACGATTGTGGT+GGG | 0.592911 | 8.2:-32166991 | MS.gene93017:CDS |
| ATTCTTGAGTCGAAAGATGT+CGG | 0.593806 | 8.2:-32165938 | MS.gene93017:CDS |
| GTAGGCCATTTGGACGATTG+TGG | 0.593974 | 8.2:-32166995 | MS.gene93017:intron |
| CCATTACGGTCAAGGAACTC+AGG | 0.595419 | 8.2:-32172661 | MS.gene93017:CDS |
| CTCATAATAACATCATGTGA+TGG | 0.596138 | 8.2:+32168867 | None:intergenic |
| CGAGCTTTAGGATATGCCCT+AGG | 0.599965 | 8.2:-32166367 | MS.gene93017:CDS |
| AGATTATCAGGCGAATCCGA+CGG | 0.600943 | 8.2:-32178433 | MS.gene93017:CDS |
| GTCATCTTCAGACATAAAGA+GGG | 0.602783 | 8.2:+32167939 | None:intergenic |
| TGGAAAGAGAGAACTTGGGT+GGG | 0.603553 | 8.2:+32166299 | None:intergenic |
| TACTGCTTCACTTATGAACA+GGG | 0.603609 | 8.2:-32167113 | MS.gene93017:CDS |
| GGACCAACAACGAGAAGTAG+AGG | 0.603750 | 8.2:-32168715 | MS.gene93017:CDS |
| TCATCTGCTTCATCAACGAA+AGG | 0.605971 | 8.2:-32176372 | MS.gene93017:CDS |
| AATACCTCAAACTCAGGCGG+AGG | 0.606582 | 8.2:+32168837 | None:intergenic |
| TCTGCAACTATTGAAGGAGT+GGG | 0.609266 | 8.2:-32172731 | MS.gene93017:CDS |
| GTTCTTGAGCCAAAAGATGT+TGG | 0.609587 | 8.2:-32166202 | MS.gene93017:CDS |
| TGTTAGATATAGAACACCTA+AGG | 0.611768 | 8.2:-32173913 | MS.gene93017:intron |
| AGTGGGAGAAGCTATGCAAA+CGG | 0.613478 | 8.2:-32172714 | MS.gene93017:CDS |
| TATATACGATCAACTAAACC+TGG | 0.613616 | 8.2:-32168369 | MS.gene93017:intron |
| TTTACCAATCGCTTTCCAGA+TGG | 0.614754 | 8.2:+32167721 | None:intergenic |
| CAACAATTCCAGGAAGATCA+CGG | 0.615203 | 8.2:+32167797 | None:intergenic |
| ATATAATCGTTATAGAAACA+TGG | 0.619137 | 8.2:-32171243 | MS.gene93017:CDS |
| TGACATATTGAGATTTGACA+AGG | 0.619202 | 8.2:-32171123 | MS.gene93017:CDS |
| CGCCGCCGTCGCAATGACGG+AGG | 0.619769 | 8.2:-32178635 | None:intergenic |
| ATCATCAGTTAATCTTGTCA+CGG | 0.620122 | 8.2:-32173035 | MS.gene93017:intron |
| TACAGGAGGAAGATCAGAGA+TGG | 0.622793 | 8.2:+32168671 | None:intergenic |
| CCCAGTAAAACAGAGAAACA+TGG | 0.623591 | 8.2:-32172550 | MS.gene93017:CDS |
| ATATCATAATAGAAGTCAGA+TGG | 0.625957 | 8.2:+32173717 | None:intergenic |
| TTCTGAGATGAAATTGTCGG+AGG | 0.627618 | 8.2:-32178476 | MS.gene93017:CDS |
| CGATGAAAGTGAAGATACAT+GGG | 0.632459 | 8.2:-32171570 | MS.gene93017:CDS |
| AAGGTGATTATCATGACAAG+AGG | 0.635570 | 8.2:-32173998 | MS.gene93017:CDS |
| ATTGGATCACCAATGAATGA+CGG | 0.635696 | 8.2:+32176327 | None:intergenic |
| CACATTGCCGTCAATTACAT+CGG | 0.638503 | 8.2:+32178537 | None:intergenic |
| CGAGTCCCAGCGATCTCCGG+TGG | 0.641380 | 8.2:-32178575 | MS.gene93017:CDS |
| ACAACTTGGGCTGGTTAGTG+CGG | 0.644922 | 8.2:+32166953 | None:intergenic |
| AGAAGAAGAGCCTCTTCCGT+CGG | 0.648818 | 8.2:+32178417 | None:intergenic |
| CAATACTGTTGCTTATGATG+AGG | 0.649387 | 8.2:-32168736 | MS.gene93017:CDS |
| TGAATTGTCTAATTCACCAG+TGG | 0.650350 | 8.2:-32176547 | MS.gene93017:CDS |
| GTTCTAACGGAAAATCTGGA+AGG | 0.653412 | 8.2:-32178513 | MS.gene93017:CDS |
| GGTGAGAAATGAATCTGCAG+AGG | 0.653824 | 8.2:-32172758 | MS.gene93017:CDS |
| TGGCAAATTCTCGTATGGTG+AGG | 0.654720 | 8.2:+32166819 | None:intergenic |
| TATCCACTAATTCCTTGACA+AGG | 0.656925 | 8.2:+32171263 | None:intergenic |
| CCACTAATTCCTTGACAAGG+AGG | 0.663586 | 8.2:+32171266 | None:intergenic |
| GGACCTGGTTATGACAACTT+GGG | 0.663853 | 8.2:+32166940 | None:intergenic |
| CCAACCTGGTTTGAAAATGG+CGG | 0.665327 | 8.2:-32176459 | MS.gene93017:CDS |
| GACATATTGAGATTTGACAA+GGG | 0.671317 | 8.2:-32171122 | MS.gene93017:CDS |
| GCTTCACTTATGAACAGGGG+AGG | 0.676655 | 8.2:-32167109 | MS.gene93017:CDS |
| TGTGATGGCAATGGAAATTG+GGG | 0.682178 | 8.2:+32168882 | None:intergenic |
| ATGAACAGGGGAGGTCCAAG+AGG | 0.683575 | 8.2:-32167100 | MS.gene93017:intron |
| TCTTGAGAGTCACTCAACAG+AGG | 0.686399 | 8.2:-32173176 | MS.gene93017:CDS |
| ATTAATACCTCAAACTCAGG+CGG | 0.690332 | 8.2:+32168834 | None:intergenic |
| TCATCTTCAGACATAAAGAG+GGG | 0.705011 | 8.2:+32167940 | None:intergenic |
| TGGGAATTTGACAAACACGT+AGG | 0.708116 | 8.2:+32167914 | None:intergenic |
| ACTGCTTCACTTATGAACAG+GGG | 0.708171 | 8.2:-32167112 | MS.gene93017:CDS |
| TTACGGTCAAGGAACTCAGG+AGG | 0.708817 | 8.2:-32172658 | MS.gene93017:CDS |
| TCTGCTTGAAACACCTCCGG+CGG | 0.729497 | 8.2:+32178607 | None:intergenic |
| TGTTGTAGGATCTGACAATG+TGG | 0.735845 | 8.2:-32167779 | MS.gene93017:CDS |
| TAATTGGAAAGAGAGAACTT+GGG | 0.738407 | 8.2:+32166295 | None:intergenic |
| TGTCGGAGGAGAATCGACGA+CGG | 0.788177 | 8.2:-32178462 | MS.gene93017:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 32165820 | 32178644 | 32165820 | ID=MS.gene93017 |
| chr8.2 | mRNA | 32165820 | 32178644 | 32165820 | ID=MS.gene93017.t1;Parent=MS.gene93017 |
| chr8.2 | exon | 32178405 | 32178644 | 32178405 | ID=MS.gene93017.t1.exon1;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32178405 | 32178644 | 32178405 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32176278 | 32176691 | 32176278 | ID=MS.gene93017.t1.exon2;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32176278 | 32176691 | 32176278 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32176026 | 32176060 | 32176026 | ID=MS.gene93017.t1.exon3;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32176026 | 32176060 | 32176026 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32175807 | 32175909 | 32175807 | ID=MS.gene93017.t1.exon4;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32175807 | 32175909 | 32175807 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32174125 | 32174229 | 32174125 | ID=MS.gene93017.t1.exon5;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32174125 | 32174229 | 32174125 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32173914 | 32174033 | 32173914 | ID=MS.gene93017.t1.exon6;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32173914 | 32174033 | 32173914 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32173673 | 32173766 | 32173673 | ID=MS.gene93017.t1.exon7;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32173673 | 32173766 | 32173673 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32173036 | 32173238 | 32173036 | ID=MS.gene93017.t1.exon8;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32173036 | 32173238 | 32173036 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32172863 | 32172928 | 32172863 | ID=MS.gene93017.t1.exon9;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32172863 | 32172928 | 32172863 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32172537 | 32172779 | 32172537 | ID=MS.gene93017.t1.exon10;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32172537 | 32172779 | 32172537 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32171551 | 32171609 | 32171551 | ID=MS.gene93017.t1.exon11;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32171551 | 32171609 | 32171551 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32171404 | 32171470 | 32171404 | ID=MS.gene93017.t1.exon12;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32171404 | 32171470 | 32171404 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32170986 | 32171315 | 32170986 | ID=MS.gene93017.t1.exon13;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32170986 | 32171315 | 32170986 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32168842 | 32168910 | 32168842 | ID=MS.gene93017.t1.exon14;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32168842 | 32168910 | 32168842 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32168674 | 32168760 | 32168674 | ID=MS.gene93017.t1.exon15;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32168674 | 32168760 | 32168674 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32168370 | 32168457 | 32168370 | ID=MS.gene93017.t1.exon16;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32168370 | 32168457 | 32168370 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32167906 | 32168024 | 32167906 | ID=MS.gene93017.t1.exon17;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32167906 | 32168024 | 32167906 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32167726 | 32167830 | 32167726 | ID=MS.gene93017.t1.exon18;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32167726 | 32167830 | 32167726 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32167101 | 32167144 | 32167101 | ID=MS.gene93017.t1.exon19;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32167101 | 32167144 | 32167101 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32166944 | 32167013 | 32166944 | ID=MS.gene93017.t1.exon20;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32166944 | 32167013 | 32166944 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32166767 | 32166870 | 32166767 | ID=MS.gene93017.t1.exon21;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32166767 | 32166870 | 32166767 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| chr8.2 | exon | 32165820 | 32166429 | 32165820 | ID=MS.gene93017.t1.exon22;Parent=MS.gene93017.t1 |
| chr8.2 | CDS | 32165820 | 32166429 | 32165820 | ID=cds.MS.gene93017.t1;Parent=MS.gene93017.t1 |
| Gene Sequence |
| Protein sequence |
