Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93160.t1 | XP_013466442.1 | 58.9 | 467 | 24 | 3 | 1 | 305 | 1 | 461 | 6.50E-132 | 480.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93160.t1 | P56725 | 39.3 | 460 | 108 | 5 | 8 | 305 | 4 | 454 | 4.3e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93160.t1 | A0A072VGD7 | 58.9 | 467 | 24 | 3 | 1 | 305 | 1 | 461 | 4.7e-132 | 480.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene93160 | 0.829735 | 4.36E-55 | -1.69E-46 |
| MS.gene051959 | MS.gene93160 | 0.836093 | 1.14E-56 | -1.69E-46 |
| MS.gene051960 | MS.gene93160 | 0.834319 | 3.21E-56 | -1.69E-46 |
| MS.gene052053 | MS.gene93160 | 0.874632 | 5.80E-68 | -1.69E-46 |
| MS.gene052091 | MS.gene93160 | 0.816359 | 5.76E-52 | -1.69E-46 |
| MS.gene052570 | MS.gene93160 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene053932 | MS.gene93160 | 0.862606 | 4.50E-64 | -1.69E-46 |
| MS.gene055549 | MS.gene93160 | 0.853081 | 3.02E-61 | -1.69E-46 |
| MS.gene055550 | MS.gene93160 | 0.853527 | 2.25E-61 | -1.69E-46 |
| MS.gene055551 | MS.gene93160 | 0.849671 | 2.78E-60 | -1.69E-46 |
| MS.gene056365 | MS.gene93160 | 0.848001 | 8.09E-60 | -1.69E-46 |
| MS.gene056530 | MS.gene93160 | 0.812629 | 3.85E-51 | -1.69E-46 |
| MS.gene057001 | MS.gene93160 | 0.833857 | 4.19E-56 | -1.69E-46 |
| MS.gene057226 | MS.gene93160 | 0.808539 | 2.95E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene93160 | 0.86348 | 2.42E-64 | -1.69E-46 |
| MS.gene058629 | MS.gene93160 | 0.861249 | 1.17E-63 | -1.69E-46 |
| MS.gene058630 | MS.gene93160 | 0.849348 | 3.42E-60 | -1.69E-46 |
| MS.gene06023 | MS.gene93160 | 0.809094 | 2.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93160.t1 | MTR_1g029540 | 89.764 | 254 | 19 | 2 | 1 | 253 | 1 | 248 | 6.55e-164 | 464 |
| MS.gene93160.t1 | MTR_1g029540 | 87.037 | 54 | 7 | 0 | 252 | 305 | 408 | 461 | 5.72e-23 | 98.6 |
| MS.gene93160.t1 | MTR_4g008630 | 83.399 | 253 | 40 | 1 | 1 | 253 | 1 | 251 | 5.27e-145 | 416 |
| MS.gene93160.t1 | MTR_4g008630 | 79.630 | 54 | 11 | 0 | 252 | 305 | 411 | 464 | 9.62e-21 | 92.4 |
| MS.gene93160.t1 | MTR_8g090095 | 63.008 | 246 | 88 | 3 | 10 | 253 | 21 | 265 | 8.89e-103 | 309 |
| MS.gene93160.t1 | MTR_8g090095 | 72.549 | 51 | 14 | 0 | 255 | 305 | 431 | 481 | 4.71e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCATTGATGTTCCTTCTA+TGG | 0.222334 | 1.3:+15476692 | MS.gene93160:CDS |
| GGAAATTTAGTTTCTGCATT+TGG | 0.256117 | 1.3:-15476423 | None:intergenic |
| TTTGAGATTGAAATGGAGTT+TGG | 0.282536 | 1.3:-15476348 | None:intergenic |
| CTCTTCCATTTGGGAGAGAA+TGG | 0.326959 | 1.3:+15476644 | MS.gene93160:CDS |
| GAACTTCGAAGTGATGAAAA+TGG | 0.335131 | 1.3:-15476374 | None:intergenic |
| AACTAAATTTCCTTCTCATA+TGG | 0.340746 | 1.3:+15476434 | MS.gene93160:CDS |
| GAAATTTAGTTTCTGCATTT+GGG | 0.369585 | 1.3:-15476422 | None:intergenic |
| TTCTTCTCCTCAATGCTTAG+AGG | 0.371597 | 1.3:-15476885 | None:intergenic |
| GTGAAGCATCCTTCCATAGA+AGG | 0.378318 | 1.3:-15476705 | None:intergenic |
| CCATCATGAAATCAACGAAT+TGG | 0.384808 | 1.3:-15476731 | None:intergenic |
| TTCTCTATCAACTCCAAGTA+AGG | 0.388992 | 1.3:-15476819 | None:intergenic |
| TGGAGTTTCTCGTATGGAAA+TGG | 0.396766 | 1.3:+15477508 | MS.gene93160:CDS |
| TTAGTTTCTGCATTTGGGTT+GGG | 0.406447 | 1.3:-15476417 | None:intergenic |
| ATATTGAGAATGTTGTTAGA+AGG | 0.414109 | 1.3:+15477402 | MS.gene93160:CDS |
| TTTGGAATTGCTTTGGCCAT+TGG | 0.414251 | 1.3:-15476166 | None:intergenic |
| ATGATATGCGAGCTTTCAAT+TGG | 0.416204 | 1.3:-15476675 | None:intergenic |
| CTCAATGCTTAGAGGGTTGA+AGG | 0.419760 | 1.3:-15476877 | None:intergenic |
| AAATGTTGTTAGTACATCAA+TGG | 0.419892 | 1.3:+15477478 | MS.gene93160:CDS |
| GAATGTTGTTAGAAGGTTGA+TGG | 0.422088 | 1.3:+15477409 | MS.gene93160:CDS |
| ATGGATGTTTGAGATTGAAA+TGG | 0.424877 | 1.3:-15476355 | None:intergenic |
| TGATTCAAATGGCCTTGTGC+TGG | 0.429358 | 1.3:-15476219 | None:intergenic |
| TCTGCATTTGGGTTGGGAGG+AGG | 0.435083 | 1.3:-15476411 | None:intergenic |
| TGATTTCATGATGGCTCAAA+AGG | 0.437813 | 1.3:+15476740 | MS.gene93160:CDS |
| AAACCAAGTGGTGATTGTTA+TGG | 0.444236 | 1.3:+15476188 | MS.gene93160:CDS |
| TACAATTCGTGGCCAAGGTT+CGG | 0.451038 | 1.3:+15476323 | MS.gene93160:CDS |
| GTATAGAAGTGCCAACATAA+TGG | 0.461138 | 1.3:-15476287 | None:intergenic |
| CAATAAGAAGCATTGGGCAG+TGG | 0.463600 | 1.3:+15476851 | MS.gene93160:CDS |
| CCAATTCGTTGATTTCATGA+TGG | 0.465832 | 1.3:+15476731 | MS.gene93160:CDS |
| AATTCTGTGAATTCAGTAAT+GGG | 0.469253 | 1.3:+15476763 | MS.gene93160:CDS |
| TTTAGTTTCTGCATTTGGGT+TGG | 0.476626 | 1.3:-15476418 | None:intergenic |
| TCTTCCATTTGGGAGAGAAT+GGG | 0.477851 | 1.3:+15476645 | MS.gene93160:CDS |
| TCACTTGCAATAAGAAGCAT+TGG | 0.483024 | 1.3:+15476844 | MS.gene93160:CDS |
| GGTGTAGAAGCTGATTCAAA+TGG | 0.504630 | 1.3:-15476230 | None:intergenic |
| AGTAATCGAAGGTCCTTACT+TGG | 0.505818 | 1.3:+15476806 | MS.gene93160:CDS |
| TCTTCTCCTCAATGCTTAGA+GGG | 0.505883 | 1.3:-15476884 | None:intergenic |
| GTTTCTGCATTTGGGTTGGG+AGG | 0.514821 | 1.3:-15476414 | None:intergenic |
| TGGAGTTTGGATCCGAACCT+TGG | 0.531258 | 1.3:-15476335 | None:intergenic |
| TGAGGAGAAGAAAGATTCAA+AGG | 0.532980 | 1.3:+15476896 | MS.gene93160:CDS |
| AATCGTCAAGCTACAATTCG+TGG | 0.533085 | 1.3:+15476312 | MS.gene93160:CDS |
| GATTCAAATGGCCTTGTGCT+GGG | 0.534487 | 1.3:-15476218 | None:intergenic |
| AACATACCTGTCCATTATGT+TGG | 0.535116 | 1.3:+15476276 | MS.gene93160:CDS |
| GAATTCTGTGAATTCAGTAA+TGG | 0.537692 | 1.3:+15476762 | MS.gene93160:CDS |
| GAGGAGAAGAAAGATTCAAA+GGG | 0.542911 | 1.3:+15476897 | MS.gene93160:CDS |
| ATTGATGTTCCTTCTATGGA+AGG | 0.543815 | 1.3:+15476696 | MS.gene93160:CDS |
| TGAAGGTGGAGTTTCTCGTA+TGG | 0.545785 | 1.3:+15477502 | MS.gene93160:CDS |
| AATAAGAAGCATTGGGCAGT+GGG | 0.548637 | 1.3:+15476852 | MS.gene93160:CDS |
| TGTAAAGAGGCTTCAAAAGA+CGG | 0.554973 | 1.3:-15476459 | None:intergenic |
| TTGGGAGGAGGTGAAACAAA+GGG | 0.558343 | 1.3:-15476399 | None:intergenic |
| GTTGGGAGGAGGTGAAACAA+AGG | 0.560569 | 1.3:-15476400 | None:intergenic |
| CAAGCTACAATTCGTGGCCA+AGG | 0.562846 | 1.3:+15476318 | MS.gene93160:CDS |
| AAATGGCCTTGTGCTGGGAA+AGG | 0.563121 | 1.3:-15476213 | None:intergenic |
| CACTTGCAATAAGAAGCATT+GGG | 0.563763 | 1.3:+15476845 | MS.gene93160:CDS |
| GATTGCATGAGTTCCGCCAC+AGG | 0.565307 | 1.3:-15476492 | None:intergenic |
| GAAGTGCCAACATAATGGAC+AGG | 0.570487 | 1.3:-15476282 | None:intergenic |
| ACATCTTCGCGAGCCTGTGG+CGG | 0.571072 | 1.3:+15476479 | MS.gene93160:CDS |
| CTTCAACCCTCTAAGCATTG+AGG | 0.593502 | 1.3:+15476878 | MS.gene93160:CDS |
| ATGGTACCTTTCCCAGCACA+AGG | 0.595372 | 1.3:+15476207 | MS.gene93160:CDS |
| TTTACATCTTCGCGAGCCTG+TGG | 0.604307 | 1.3:+15476476 | MS.gene93160:CDS |
| AAAGACGGAACCATATGAGA+AGG | 0.610573 | 1.3:-15476444 | None:intergenic |
| GTTAGTACATCAATGGATGA+AGG | 0.612551 | 1.3:+15477485 | MS.gene93160:CDS |
| AATTCACTAATGGCTTCCAA+TGG | 0.622620 | 1.3:+15476150 | None:intergenic |
| GTACCATAACAATCACCACT+TGG | 0.627734 | 1.3:-15476191 | None:intergenic |
| AGGCTCGCGAAGATGTAAAG+AGG | 0.628262 | 1.3:-15476472 | None:intergenic |
| TCAATGCTTAGAGGGTTGAA+GGG | 0.633942 | 1.3:-15476876 | None:intergenic |
| AGTACATCAATGGATGAAGG+TGG | 0.655424 | 1.3:+15477488 | MS.gene93160:CDS |
| TAGAAGGTTGATGGAGACAA+CGG | 0.673981 | 1.3:+15477418 | MS.gene93160:CDS |
| GTGATAAGATTAAGCGTGAG+AGG | 0.673993 | 1.3:-15476251 | None:intergenic |
| AATACAAGCAGAGTAATCGA+AGG | 0.676316 | 1.3:+15476795 | MS.gene93160:CDS |
| AGGTTGATGGAGACAACGGA+AGG | 0.677835 | 1.3:+15477422 | MS.gene93160:CDS |
| ATAAGAAGCATTGGGCAGTG+GGG | 0.729612 | 1.3:+15476853 | MS.gene93160:CDS |
| GGAGGAGGTGAAACAAAGGG+AGG | 0.746890 | 1.3:-15476396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCAAGATAAAGTTTATT+TGG | + | chr1.3:15477042-15477061 | MS.gene93160:intron | 20.0% |
| !! | AAGCAAGATAAAGTTTATTT+GGG | + | chr1.3:15477043-15477062 | MS.gene93160:intron | 20.0% |
| !! | ACATCTTTGATAAAAATGAA+GGG | + | chr1.3:15477090-15477109 | MS.gene93160:intron | 20.0% |
| !!! | TCAGTTATATATGTATCTTT+TGG | + | chr1.3:15476963-15476982 | MS.gene93160:intron | 20.0% |
| ! | AAATGTTGTTAGTACATCAA+TGG | + | chr1.3:15477478-15477497 | MS.gene93160:CDS | 25.0% |
| ! | AAATTGAACAGATTGGAATT+GGG | + | chr1.3:15477012-15477031 | MS.gene93160:intron | 25.0% |
| ! | AACTAAATTTCCTTCTCATA+TGG | + | chr1.3:15476434-15476453 | MS.gene93160:CDS | 25.0% |
| ! | AATTCTGTGAATTCAGTAAT+GGG | + | chr1.3:15476763-15476782 | MS.gene93160:CDS | 25.0% |
| ! | ATAACACAAGTGTTAAAGAT+TGG | + | chr1.3:15477329-15477348 | MS.gene93160:intron | 25.0% |
| ! | ATATTGAGAATGTTGTTAGA+AGG | + | chr1.3:15477402-15477421 | MS.gene93160:CDS | 25.0% |
| ! | GACATCTTTGATAAAAATGA+AGG | + | chr1.3:15477089-15477108 | MS.gene93160:intron | 25.0% |
| !! | ACTTTCATCTGTTTTCAAAA+GGG | + | chr1.3:15476515-15476534 | MS.gene93160:CDS | 25.0% |
| !! | GAAATTTAGTTTCTGCATTT+GGG | - | chr1.3:15476425-15476444 | None:intergenic | 25.0% |
| !! | TGTAATTCATGACACTTTTA+TGG | + | chr1.3:15476542-15476561 | MS.gene93160:CDS | 25.0% |
| CAAATTGAACAGATTGGAAT+TGG | + | chr1.3:15477011-15477030 | MS.gene93160:intron | 30.0% | |
| GAATTCTGTGAATTCAGTAA+TGG | + | chr1.3:15476762-15476781 | MS.gene93160:CDS | 30.0% | |
| GATAAAAATGAAGGGAAAAG+AGG | + | chr1.3:15477098-15477117 | MS.gene93160:intron | 30.0% | |
| GTTATCAAAACACAGTTTCT+TGG | - | chr1.3:15477314-15477333 | None:intergenic | 30.0% | |
| TATCATTGATGTTCCTTCTA+TGG | + | chr1.3:15476692-15476711 | MS.gene93160:CDS | 30.0% | |
| ! | ACAAGTGTTAAAGATTGGTT+TGG | + | chr1.3:15477334-15477353 | MS.gene93160:intron | 30.0% |
| ! | ATGGATGTTTGAGATTGAAA+TGG | - | chr1.3:15476358-15476377 | None:intergenic | 30.0% |
| ! | CACTTTCATCTGTTTTCAAA+AGG | + | chr1.3:15476514-15476533 | MS.gene93160:CDS | 30.0% |
| ! | GGAAATTTAGTTTCTGCATT+TGG | - | chr1.3:15476426-15476445 | None:intergenic | 30.0% |
| ! | TACAGTTTTCTCTTCCATTT+GGG | + | chr1.3:15476635-15476654 | MS.gene93160:CDS | 30.0% |
| ! | TTACAGTTTTCTCTTCCATT+TGG | + | chr1.3:15476634-15476653 | MS.gene93160:CDS | 30.0% |
| ! | TTTGAGATTGAAATGGAGTT+TGG | - | chr1.3:15476351-15476370 | None:intergenic | 30.0% |
| AAAAGAGGTGAACCTTCAAA+AGG | + | chr1.3:15477113-15477132 | MS.gene93160:intron | 35.0% | |
| AAACCAAGTGGTGATTGTTA+TGG | + | chr1.3:15476188-15476207 | MS.gene93160:CDS | 35.0% | |
| AACATACCTGTCCATTATGT+TGG | + | chr1.3:15476276-15476295 | MS.gene93160:CDS | 35.0% | |
| AAGCAATTCCAAAAACCAAG+TGG | + | chr1.3:15476176-15476195 | MS.gene93160:CDS | 35.0% | |
| AATACAAGCAGAGTAATCGA+AGG | + | chr1.3:15476795-15476814 | MS.gene93160:CDS | 35.0% | |
| AGAAGAAAGATTCAAAGGGT+AGG | + | chr1.3:15476901-15476920 | MS.gene93160:intron | 35.0% | |
| ATGATATGCGAGCTTTCAAT+TGG | - | chr1.3:15476678-15476697 | None:intergenic | 35.0% | |
| ATTGATGTTCCTTCTATGGA+AGG | + | chr1.3:15476696-15476715 | MS.gene93160:CDS | 35.0% | |
| CCATCATGAAATCAACGAAT+TGG | - | chr1.3:15476734-15476753 | None:intergenic | 35.0% | |
| GAACTTCGAAGTGATGAAAA+TGG | - | chr1.3:15476377-15476396 | None:intergenic | 35.0% | |
| GAAGAGAGAATTGAAGGAAT+GGG | + | chr1.3:15477140-15477159 | MS.gene93160:intron | 35.0% | |
| GAATGTTGTTAGAAGGTTGA+TGG | + | chr1.3:15477409-15477428 | MS.gene93160:CDS | 35.0% | |
| GAGGAACAAATTGAACAGAT+TGG | + | chr1.3:15477005-15477024 | MS.gene93160:intron | 35.0% | |
| GAGGAGAAGAAAGATTCAAA+GGG | + | chr1.3:15476897-15476916 | MS.gene93160:CDS | 35.0% | |
| GTGTTAAGAGATGCTGATAA+AGG | + | chr1.3:15477065-15477084 | MS.gene93160:intron | 35.0% | |
| GTTAGTACATCAATGGATGA+AGG | + | chr1.3:15477485-15477504 | MS.gene93160:CDS | 35.0% | |
| TGAAGAGAGAATTGAAGGAA+TGG | + | chr1.3:15477139-15477158 | MS.gene93160:intron | 35.0% | |
| TGAGGAGAAGAAAGATTCAA+AGG | + | chr1.3:15476896-15476915 | MS.gene93160:CDS | 35.0% | |
| TGATTTCATGATGGCTCAAA+AGG | + | chr1.3:15476740-15476759 | MS.gene93160:CDS | 35.0% | |
| TGTAAAGAGGCTTCAAAAGA+CGG | - | chr1.3:15476462-15476481 | None:intergenic | 35.0% | |
| TTCTCTATCAACTCCAAGTA+AGG | - | chr1.3:15476822-15476841 | None:intergenic | 35.0% | |
| TTGGGCTAAAAGACATGAAT+TGG | + | chr1.3:15477367-15477386 | MS.gene93160:intron | 35.0% | |
| ! | CTCTCTTCAAAACCTTTTGA+AGG | - | chr1.3:15477128-15477147 | None:intergenic | 35.0% |
| ! | TCACTTGCAATAAGAAGCAT+TGG | + | chr1.3:15476844-15476863 | MS.gene93160:CDS | 35.0% |
| ! | TTAGTTTCTGCATTTGGGTT+GGG | - | chr1.3:15476420-15476439 | None:intergenic | 35.0% |
| ! | TTCAATTTGTTCCTCTGTCA+AGG | - | chr1.3:15477000-15477019 | None:intergenic | 35.0% |
| ! | TTTAGTTTCTGCATTTGGGT+TGG | - | chr1.3:15476421-15476440 | None:intergenic | 35.0% |
| !! | AAAGATTGGTTTGGTTGTGA+AGG | + | chr1.3:15477343-15477362 | MS.gene93160:intron | 35.0% |
| !! | AACAATCACCACTTGGTTTT+TGG | - | chr1.3:15476187-15476206 | None:intergenic | 35.0% |
| !! | ACCTTAGAGAGCATTTCAAT+GGG | + | chr1.3:15477251-15477270 | MS.gene93160:intron | 35.0% |
| !! | CACTTGCAATAAGAAGCATT+GGG | + | chr1.3:15476845-15476864 | MS.gene93160:CDS | 35.0% |
| !! | CCAATTCGTTGATTTCATGA+TGG | + | chr1.3:15476731-15476750 | MS.gene93160:CDS | 35.0% |
| !! | GTATAGAAGTGCCAACATAA+TGG | - | chr1.3:15476290-15476309 | None:intergenic | 35.0% |
| !! | TACCTTAGAGAGCATTTCAA+TGG | + | chr1.3:15477250-15477269 | MS.gene93160:intron | 35.0% |
| !!! | CTTGGTTTTTGGAATTGCTT+TGG | - | chr1.3:15476176-15476195 | None:intergenic | 35.0% |
| !!! | GGTTTTGAAGAGAGAATTGA+AGG | + | chr1.3:15477134-15477153 | MS.gene93160:intron | 35.0% |
| AAAGACGGAACCATATGAGA+AGG | - | chr1.3:15476447-15476466 | None:intergenic | 40.0% | |
| AACAACAACAACCTTGACAG+AGG | + | chr1.3:15476986-15477005 | MS.gene93160:intron | 40.0% | |
| AATCGTCAAGCTACAATTCG+TGG | + | chr1.3:15476312-15476331 | MS.gene93160:CDS | 40.0% | |
| AATTCTAAGCCACCCTTCAA+CGG | + | chr1.3:15477196-15477215 | MS.gene93160:intron | 40.0% | |
| AGTAATCGAAGGTCCTTACT+TGG | + | chr1.3:15476806-15476825 | MS.gene93160:CDS | 40.0% | |
| AGTACATCAATGGATGAAGG+TGG | + | chr1.3:15477488-15477507 | MS.gene93160:CDS | 40.0% | |
| GGTTTATGAGTCATTGTGGA+TGG | + | chr1.3:15477222-15477241 | MS.gene93160:intron | 40.0% | |
| GTACCATAACAATCACCACT+TGG | - | chr1.3:15476194-15476213 | None:intergenic | 40.0% | |
| GTGATAAGATTAAGCGTGAG+AGG | - | chr1.3:15476254-15476273 | None:intergenic | 40.0% | |
| GTGGCTTAGAATTTCCAACT+GGG | - | chr1.3:15477189-15477208 | None:intergenic | 40.0% | |
| TCAAAACACAGTTTCTTGGC+TGG | - | chr1.3:15477310-15477329 | None:intergenic | 40.0% | |
| TCAATGCTTAGAGGGTTGAA+GGG | - | chr1.3:15476879-15476898 | None:intergenic | 40.0% | |
| TCTTCCATTTGGGAGAGAAT+GGG | + | chr1.3:15476645-15476664 | MS.gene93160:CDS | 40.0% | |
| TCTTCTCCTCAATGCTTAGA+GGG | - | chr1.3:15476887-15476906 | None:intergenic | 40.0% | |
| TGGAGTTTCTCGTATGGAAA+TGG | + | chr1.3:15477508-15477527 | MS.gene93160:CDS | 40.0% | |
| TGGCTTAGAATTTCCAACTG+GGG | - | chr1.3:15477188-15477207 | None:intergenic | 40.0% | |
| TTCTTCTCCTCAATGCTTAG+AGG | - | chr1.3:15476888-15476907 | None:intergenic | 40.0% | |
| ! | GGTGTAGAAGCTGATTCAAA+TGG | - | chr1.3:15476233-15476252 | None:intergenic | 40.0% |
| ! | TGACACTTTTATGGCATCAG+TGG | + | chr1.3:15476551-15476570 | MS.gene93160:CDS | 40.0% |
| ! | TTTGGAATTGCTTTGGCCAT+TGG | - | chr1.3:15476169-15476188 | None:intergenic | 40.0% |
| ! | TTTTCCCATTCTCTCCCAAA+TGG | - | chr1.3:15476652-15476671 | None:intergenic | 40.0% |
| !! | AATAAGAAGCATTGGGCAGT+GGG | + | chr1.3:15476852-15476871 | MS.gene93160:CDS | 40.0% |
| !! | CCTTAGAGAGCATTTCAATG+GGG | + | chr1.3:15477252-15477271 | MS.gene93160:intron | 40.0% |
| !! | CTTAGAGAGCATTTCAATGG+GGG | + | chr1.3:15477253-15477272 | MS.gene93160:intron | 40.0% |
| !! | TAGAAGGTTGATGGAGACAA+CGG | + | chr1.3:15477418-15477437 | MS.gene93160:CDS | 40.0% |
| !! | TGGTTTGGTTGTGAAGGATT+GGG | + | chr1.3:15477349-15477368 | MS.gene93160:intron | 40.0% |
| !! | TTGGTTTGGTTGTGAAGGAT+TGG | + | chr1.3:15477348-15477367 | MS.gene93160:intron | 40.0% |
| ATTCTAAGCCACCCTTCAAC+GGG | + | chr1.3:15477197-15477216 | MS.gene93160:intron | 45.0% | |
| CCCCATTGAAATGCTCTCTA+AGG | - | chr1.3:15477255-15477274 | None:intergenic | 45.0% | |
| CTCAATGCTTAGAGGGTTGA+AGG | - | chr1.3:15476880-15476899 | None:intergenic | 45.0% | |
| CTCTTCCATTTGGGAGAGAA+TGG | + | chr1.3:15476644-15476663 | MS.gene93160:CDS | 45.0% | |
| GGAGGGTTTATGAGTCATTG+TGG | + | chr1.3:15477218-15477237 | MS.gene93160:intron | 45.0% | |
| GGTGGCTTAGAATTTCCAAC+TGG | - | chr1.3:15477190-15477209 | None:intergenic | 45.0% | |
| TACAATTCGTGGCCAAGGTT+CGG | + | chr1.3:15476323-15476342 | MS.gene93160:CDS | 45.0% | |
| TCATAAACCCTCCCGTTGAA+GGG | - | chr1.3:15477211-15477230 | None:intergenic | 45.0% | |
| TGAAGGTGGAGTTTCTCGTA+TGG | + | chr1.3:15477502-15477521 | MS.gene93160:CDS | 45.0% | |
| TTGGGAGGAGGTGAAACAAA+GGG | - | chr1.3:15476402-15476421 | None:intergenic | 45.0% | |
| ! | CTTCAACCCTCTAAGCATTG+AGG | + | chr1.3:15476878-15476897 | MS.gene93160:CDS | 45.0% |
| ! | GTGAAGCATCCTTCCATAGA+AGG | - | chr1.3:15476708-15476727 | None:intergenic | 45.0% |
| !! | AAGGAATGGGCTTTGTTGTG+AGG | + | chr1.3:15477153-15477172 | MS.gene93160:intron | 45.0% |
| !! | AGGAATGGGCTTTGTTGTGA+GGG | + | chr1.3:15477154-15477173 | MS.gene93160:intron | 45.0% |
| !! | ATAAGAAGCATTGGGCAGTG+GGG | + | chr1.3:15476853-15476872 | MS.gene93160:CDS | 45.0% |
| !! | CAATAAGAAGCATTGGGCAG+TGG | + | chr1.3:15476851-15476870 | MS.gene93160:CDS | 45.0% |
| !! | GAAGTGCCAACATAATGGAC+AGG | - | chr1.3:15476285-15476304 | None:intergenic | 45.0% |
| !! | GATTCAAATGGCCTTGTGCT+GGG | - | chr1.3:15476221-15476240 | None:intergenic | 45.0% |
| !! | TGATTCAAATGGCCTTGTGC+TGG | - | chr1.3:15476222-15476241 | None:intergenic | 45.0% |
| AAAGGGTAGGCACTCATGCA+TGG | + | chr1.3:15476914-15476933 | MS.gene93160:intron | 50.0% | |
| AGGCTCGCGAAGATGTAAAG+AGG | - | chr1.3:15476475-15476494 | None:intergenic | 50.0% | |
| ATGGTACCTTTCCCAGCACA+AGG | + | chr1.3:15476207-15476226 | MS.gene93160:CDS | 50.0% | |
| CAAGCTACAATTCGTGGCCA+AGG | + | chr1.3:15476318-15476337 | MS.gene93160:CDS | 50.0% | |
| CTCATAAACCCTCCCGTTGA+AGG | - | chr1.3:15477212-15477231 | None:intergenic | 50.0% | |
| GTAGGCACTCATGCATGGAA+TGG | + | chr1.3:15476919-15476938 | MS.gene93160:intron | 50.0% | |
| GTTGGGAGGAGGTGAAACAA+AGG | - | chr1.3:15476403-15476422 | None:intergenic | 50.0% | |
| TGCATAGGCCATGCTGCTAT+TGG | - | chr1.3:15477281-15477300 | None:intergenic | 50.0% | |
| TGGAGTTTGGATCCGAACCT+TGG | - | chr1.3:15476338-15476357 | None:intergenic | 50.0% | |
| TTTACATCTTCGCGAGCCTG+TGG | + | chr1.3:15476476-15476495 | MS.gene93160:CDS | 50.0% | |
| ! | CTTGGCTGGTCAGAATGCAT+AGG | - | chr1.3:15477296-15477315 | None:intergenic | 50.0% |
| !! | AAATGGCCTTGTGCTGGGAA+AGG | - | chr1.3:15476216-15476235 | None:intergenic | 50.0% |
| !! | AGGTTGATGGAGACAACGGA+AGG | + | chr1.3:15477422-15477441 | MS.gene93160:CDS | 50.0% |
| !! | GGGCTTTGTTGTGAGGGATT+GGG | + | chr1.3:15477160-15477179 | MS.gene93160:intron | 50.0% |
| !! | GTTTCTGCATTTGGGTTGGG+AGG | - | chr1.3:15476417-15476436 | None:intergenic | 50.0% |
| !! | TGGGCTTTGTTGTGAGGGAT+TGG | + | chr1.3:15477159-15477178 | MS.gene93160:intron | 50.0% |
| GATTGCATGAGTTCCGCCAC+AGG | - | chr1.3:15476495-15476514 | None:intergenic | 55.0% | |
| GGAGGAGGTGAAACAAAGGG+AGG | - | chr1.3:15476399-15476418 | None:intergenic | 55.0% | |
| TAAACCCTCCCGTTGAAGGG+TGG | - | chr1.3:15477208-15477227 | None:intergenic | 55.0% | |
| TAAGCCACCCTTCAACGGGA+GGG | + | chr1.3:15477201-15477220 | MS.gene93160:intron | 55.0% | |
| !! | TCTGCATTTGGGTTGGGAGG+AGG | - | chr1.3:15476414-15476433 | None:intergenic | 55.0% |
| ACATCTTCGCGAGCCTGTGG+CGG | + | chr1.3:15476479-15476498 | MS.gene93160:CDS | 60.0% | |
| CTAAGCCACCCTTCAACGGG+AGG | + | chr1.3:15477200-15477219 | MS.gene93160:intron | 60.0% | |
| !! | TGGGGGTGCCAATAGCAGCA+TGG | + | chr1.3:15477270-15477289 | MS.gene93160:intron | 60.0% |
| GAGGGATTGGGCACCCCAGT+TGG | + | chr1.3:15477172-15477191 | MS.gene93160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 15476159 | 15477559 | 15476159 | ID=MS.gene93160 |
| chr1.3 | mRNA | 15476159 | 15477559 | 15476159 | ID=MS.gene93160.t1;Parent=MS.gene93160 |
| chr1.3 | exon | 15476159 | 15476918 | 15476159 | ID=MS.gene93160.t1.exon1;Parent=MS.gene93160.t1 |
| chr1.3 | CDS | 15476159 | 15476918 | 15476159 | ID=cds.MS.gene93160.t1;Parent=MS.gene93160.t1 |
| chr1.3 | exon | 15477402 | 15477559 | 15477402 | ID=MS.gene93160.t1.exon2;Parent=MS.gene93160.t1 |
| chr1.3 | CDS | 15477402 | 15477559 | 15477402 | ID=cds.MS.gene93160.t1;Parent=MS.gene93160.t1 |
| Gene Sequence |
| Protein sequence |
