AlfalfaGEDB | MS.gene93178

M. sativa cultivar XinJiangDaYe / MS.gene93178

KEGG: K00128
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93178.t1	RHN77911.1	96.2	80	3	0	1	80	1	80	5.80E-32	146.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93178.t1	Q70DU8	56.5	69	30	0	8	76	4	72	2.6e-12	72.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93178.t1	A0A396JML5	96.2	80	3	0	1	80	1	80	4.2e-32	146.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene93178	0.821224	4.52E-53	-1.69E-46
MS.gene049435	MS.gene93178	0.827172	1.81E-54	-1.69E-46
MS.gene051198	MS.gene93178	0.808687	2.74E-50	-1.69E-46
MS.gene051279	MS.gene93178	0.804983	1.66E-49	-1.69E-46
MS.gene051744	MS.gene93178	0.826425	2.73E-54	-1.69E-46
MS.gene051800	MS.gene93178	0.805405	1.36E-49	-1.69E-46
MS.gene052582	MS.gene93178	0.810025	1.41E-50	-1.69E-46
MS.gene052584	MS.gene93178	0.811583	6.51E-51	-1.69E-46
MS.gene053998	MS.gene93178	0.803957	2.72E-49	-1.69E-46
MS.gene05415	MS.gene93178	0.811596	6.47E-51	-1.69E-46
MS.gene05417	MS.gene93178	0.800239	1.58E-48	-1.69E-46
MS.gene054236	MS.gene93178	0.802563	5.29E-49	-1.69E-46
MS.gene054479	MS.gene93178	0.802853	4.61E-49	-1.69E-46
MS.gene054576	MS.gene93178	0.801601	8.34E-49	-1.69E-46
MS.gene054651	MS.gene93178	0.804403	2.20E-49	-1.69E-46
MS.gene056173	MS.gene93178	0.803358	3.62E-49	-1.69E-46
MS.gene056174	MS.gene93178	0.834685	2.60E-56	-1.69E-46
MS.gene05686	MS.gene93178	0.80619	9.28E-50	-1.69E-46
MS.gene057598	MS.gene93178	0.821716	3.48E-53	-1.69E-46
MS.gene057855	MS.gene93178	0.808189	3.50E-50	-1.69E-46
MS.gene057869	MS.gene93178	0.848444	6.11E-60	-1.69E-46
MS.gene058010	MS.gene93178	0.822249	2.62E-53	-1.69E-46
MS.gene058289	MS.gene93178	0.831814	1.35E-55	-1.69E-46
MS.gene058294	MS.gene93178	0.80062	1.32E-48	-1.69E-46
MS.gene058919	MS.gene93178	0.804866	1.76E-49	-1.69E-46
MS.gene058979	MS.gene93178	0.848006	8.07E-60	-1.69E-46
MS.gene059439	MS.gene93178	0.806637	7.47E-50	-1.69E-46
MS.gene05973	MS.gene93178	0.808562	2.91E-50	-1.69E-46
MS.gene060011	MS.gene93178	0.838786	2.34E-57	-1.69E-46
MS.gene060167	MS.gene93178	0.824638	7.24E-54	-1.69E-46
MS.gene060373	MS.gene93178	0.820618	6.24E-53	-1.69E-46
MS.gene06052	MS.gene93178	0.815868	7.41E-52	-1.69E-46
MS.gene060918	MS.gene93178	0.81003	1.41E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93178.t1	MTR_1g029840	96.053	76	3	1	76	1	76	1.57e-43	146
MS.gene93178.t1	MTR_3g088150	51.389	72	35	8	79	10	81	1.67e-20	84.0
MS.gene93178.t1	MTR_8g094600	48.571	70	36	8	77	61	130	3.67e-19	80.1
MS.gene93178.t1	MTR_1g029840	52.174	69	33	8	76	8	76	3.83e-17	74.3
MS.gene93178.t1	MTR_8g076480	48.387	62	32	15	76	8	69	9.16e-13	62.0

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93178.t1	AT1G44170	56.522	69	30	8	76	4	72	1.30e-18	78.6
MS.gene93178.t1	AT1G44170	56.522	69	30	8	76	4	72	1.30e-18	78.6
MS.gene93178.t1	AT4G34240	48.529	68	35	11	78	70	137	9.30e-17	73.2
MS.gene93178.t1	AT4G34240	48.529	68	35	11	78	55	122	1.19e-16	73.2
MS.gene93178.t1	AT4G34240	48.529	68	35	11	78	70	137	1.20e-16	73.2

Find 7 sgRNAs with CRISPR-Local

Find 9 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTCAGTTGAAGGCACTTC+TGG	0.189731	1.3:-15796711	MS.gene93178:CDS
TTGAGAATAACGTTTGATTC+TGG	0.302281	1.3:-15796761	MS.gene93178:CDS
ATGGAAAGTTTCTCAGTTGA+AGG	0.449116	1.3:-15796720	MS.gene93178:CDS
ATGAGAAATTGAGTACCTCT+TGG	0.488000	1.3:+15796609	None:intergenic
ATTGAGTACCTCTTGGATGA+AGG	0.488247	1.3:+15796616	None:intergenic
GTAAGACTCGAAGCTACGAA+TGG	0.580175	1.3:-15796739	MS.gene93178:CDS
AGCTGAATCCTTCATCCAAG+AGG	0.631889	1.3:-15796624	MS.gene93178:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	CAACAAAAAAGTGTTTGATT+TGG	-	chr1.3:15796624-15796643	MS.gene93178:CDS	25.0%
!!!	TTTTTTGTTGAGTTTAGAAG+AGG	+	chr1.3:15796614-15796633	None:intergenic	25.0%
	TTGAGAATAACGTTTGATTC+TGG	-	chr1.3:15796673-15796692	MS.gene93178:CDS	30.0%
	ATGAGAAATTGAGTACCTCT+TGG	+	chr1.3:15796828-15796847	None:intergenic	35.0%
	ATGGAAAGTTTCTCAGTTGA+AGG	-	chr1.3:15796714-15796733	MS.gene93178:CDS	35.0%
	ATTGAGTACCTCTTGGATGA+AGG	+	chr1.3:15796821-15796840	None:intergenic	40.0%
	AGCTGAATCCTTCATCCAAG+AGG	-	chr1.3:15796810-15796829	MS.gene93178:CDS	45.0%
	GTAAGACTCGAAGCTACGAA+TGG	-	chr1.3:15796695-15796714	MS.gene93178:CDS	45.0%
!!	TTCTCAGTTGAAGGCACTTC+TGG	-	chr1.3:15796723-15796742	MS.gene93178:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	15796607	15796849	15796607	ID=MS.gene93178
chr1.3	mRNA	15796607	15796849	15796607	ID=MS.gene93178.t1;Parent=MS.gene93178
chr1.3	exon	15796607	15796849	15796607	ID=MS.gene93178.t1.exon1;Parent=MS.gene93178.t1
chr1.3	CDS	15796607	15796849	15796607	ID=cds.MS.gene93178.t1;Parent=MS.gene93178.t1

Gene Sequence	>MS.gene93178 ATGGCCTCTTCTAAACTCAACAAAAAAGTGTTTGATTTGGAAGAAGCTTCAACAACAGTTAAAGATTTGAGAATAACGTTTGATTCTGGTAAGACTCGAAGCTACGAATGGAAAGTTTCTCAGTTGAAGGCACTTCTGGAATTAACTGATAAGCATGAGCAAGAGATTGTTGAAGCTCTTTACTCTGACTTATCAAAATCTGAAGCTGAATCCTTCATCCAAGAGGTACTCAATTTCTCATAG
Protein sequence	>MS.gene93178.t1 MASSKLNKKVFDLEEASTTVKDLRITFDSGKTRSYEWKVSQLKALLELTDKHEQEIVEALYSDLSKSEAESFIQEVLNFS