Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94958.t1 | XP_013460060.1 | 99.1 | 469 | 4 | 0 | 1 | 469 | 1 | 469 | 7.90E-254 | 885.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94958.t1 | Q9FE17 | 66.7 | 468 | 150 | 3 | 1 | 466 | 1 | 464 | 7.2e-179 | 628.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94958.t1 | A0A072UXC4 | 99.1 | 469 | 4 | 0 | 1 | 469 | 1 | 469 | 5.7e-254 | 885.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene94958 | 0.815037 | 1.14E-51 | -1.69E-46 |
MS.gene049350 | MS.gene94958 | 0.821031 | 5.01E-53 | -1.69E-46 |
MS.gene049825 | MS.gene94958 | 0.813803 | 2.13E-51 | -1.69E-46 |
MS.gene051247 | MS.gene94958 | 0.809076 | 2.26E-50 | -1.69E-46 |
MS.gene051719 | MS.gene94958 | 0.803017 | 4.26E-49 | -1.69E-46 |
MS.gene051744 | MS.gene94958 | 0.80146 | 8.91E-49 | -1.69E-46 |
MS.gene052463 | MS.gene94958 | 0.809584 | 1.76E-50 | -1.69E-46 |
MS.gene052519 | MS.gene94958 | 0.803305 | 3.71E-49 | -1.69E-46 |
MS.gene052773 | MS.gene94958 | 0.821212 | 4.55E-53 | -1.69E-46 |
MS.gene053226 | MS.gene94958 | 0.837697 | 4.46E-57 | -1.69E-46 |
MS.gene053599 | MS.gene94958 | 0.805746 | 1.15E-49 | -1.69E-46 |
MS.gene05458 | MS.gene94958 | 0.812782 | 3.57E-51 | -1.69E-46 |
MS.gene054651 | MS.gene94958 | 0.809156 | 2.18E-50 | -1.69E-46 |
MS.gene054775 | MS.gene94958 | 0.810208 | 1.29E-50 | -1.69E-46 |
MS.gene054991 | MS.gene94958 | 0.800176 | 1.63E-48 | -1.69E-46 |
MS.gene055466 | MS.gene94958 | 0.801958 | 7.04E-49 | -1.69E-46 |
MS.gene055694 | MS.gene94958 | 0.80157 | 8.46E-49 | -1.69E-46 |
MS.gene056050 | MS.gene94958 | 0.800921 | 1.15E-48 | -1.69E-46 |
MS.gene056595 | MS.gene94958 | 0.801127 | 1.04E-48 | -1.69E-46 |
MS.gene05686 | MS.gene94958 | 0.808395 | 3.16E-50 | -1.69E-46 |
MS.gene057102 | MS.gene94958 | 0.827418 | 1.58E-54 | -1.69E-46 |
MS.gene058625 | MS.gene94958 | 0.815254 | 1.02E-51 | -1.69E-46 |
MS.gene059625 | MS.gene94958 | 0.849539 | 3.03E-60 | -1.69E-46 |
MS.gene060365 | MS.gene94958 | 0.825238 | 5.23E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94958.t1 | MTR_3g460800 | 99.147 | 469 | 4 | 0 | 1 | 469 | 1 | 469 | 0.0 | 967 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94958.t1 | AT5G55760 | 68.162 | 468 | 143 | 3 | 1 | 466 | 1 | 464 | 0.0 | 677 |
Find 113 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCCTTGTCTTTCAGCTTT+TGG | 0.183497 | 3.1:+44665082 | None:intergenic |
GGTAGAAACTATTGGTTTAA+AGG | 0.219781 | 3.1:-44669778 | MS.gene94958:CDS |
GAAGCGTTCAAAAGCTTCTA+AGG | 0.253424 | 3.1:-44664872 | MS.gene94958:CDS |
AGGTTTCAAACCAGCCATTC+TGG | 0.273794 | 3.1:-44665743 | MS.gene94958:CDS |
ATTTATCTACACCTTTGATA+TGG | 0.278022 | 3.1:+44664843 | None:intergenic |
AGCAACCATTTCGGCTTAAA+AGG | 0.282979 | 3.1:-44665717 | MS.gene94958:intron |
ATGGTTCTAAACCTCAATTT+TGG | 0.301570 | 3.1:-44665472 | MS.gene94958:CDS |
ACTAGCTATCATGATTAAAA+AGG | 0.305932 | 3.1:-44671144 | MS.gene94958:intron |
TCAGCAGGATTCATCTCCTT+TGG | 0.308548 | 3.1:+44669114 | None:intergenic |
TTCGAGGTCCCAAGGGGATT+TGG | 0.313823 | 3.1:-44670956 | MS.gene94958:CDS |
CAAGGGGATTTGGACGCTTC+AGG | 0.315058 | 3.1:-44670946 | MS.gene94958:intron |
TTCTCGTGATAGAATGTTGA+TGG | 0.318576 | 3.1:-44670270 | MS.gene94958:intron |
TTCTTTCGATAACAGCATTC+TGG | 0.319750 | 3.1:+44665040 | None:intergenic |
TCACCATTGGTTAGAGAATC+AGG | 0.321158 | 3.1:+44664940 | None:intergenic |
TAGAACCATTTCAAATGCTT+TGG | 0.361886 | 3.1:+44665486 | None:intergenic |
ACTGCATGGGAATTCTTTCA+TGG | 0.370190 | 3.1:-44670205 | MS.gene94958:CDS |
TGGCTGGTTTGAAACCTTCC+TGG | 0.371374 | 3.1:+44665749 | None:intergenic |
TGTCTCACCGTAAAATCAAT+TGG | 0.384741 | 3.1:+44665412 | None:intergenic |
CCCTTGGGACCTCGAAAATC+AGG | 0.386023 | 3.1:+44670963 | None:intergenic |
GAGCATGCACTACAATAATC+TGG | 0.394709 | 3.1:+44667434 | None:intergenic |
TGCAGATTCCTCCTTTCATC+AGG | 0.399672 | 3.1:-44667468 | MS.gene94958:CDS |
TTCTGGATAAGCAACCATTT+CGG | 0.403937 | 3.1:-44665726 | MS.gene94958:CDS |
ATTCAGATCAAATACCTTAT+CGG | 0.407046 | 3.1:+44668193 | None:intergenic |
TGTTTGCAGTGCTTCTCAGC+AGG | 0.427898 | 3.1:+44669099 | None:intergenic |
AAGCATCTAGTAGTGTTTAC+AGG | 0.433592 | 3.1:-44671014 | MS.gene94958:CDS |
CTTGGCACCGCACGGTGAAA+TGG | 0.435372 | 3.1:+44670562 | None:intergenic |
TAGGTAGTAATCTCGCTTCT+AGG | 0.438765 | 3.1:+44665003 | None:intergenic |
CACCAACCAACCATGTCTCT+TGG | 0.439468 | 3.1:-44673134 | None:intergenic |
TGAAATGGTAATGATGCTTC+AGG | 0.442158 | 3.1:+44670577 | None:intergenic |
CGCAGCCATCGCCAAAATTG+AGG | 0.447150 | 3.1:+44665461 | None:intergenic |
TAATCTCGCTTCTAGGTGTC+AGG | 0.456233 | 3.1:+44665010 | None:intergenic |
AAGCTTGACTCACATGGCTC+TGG | 0.465938 | 3.1:-44670542 | MS.gene94958:CDS |
CTAGTAGTGTTTACAGGTGC+AGG | 0.473109 | 3.1:-44671008 | MS.gene94958:CDS |
GATGGTCTCCATCTTCGATC+TGG | 0.473881 | 3.1:-44670252 | MS.gene94958:CDS |
AAAATGTGGAACAAGACTTA+AGG | 0.474278 | 3.1:-44669730 | MS.gene94958:CDS |
TGCTGAGAAGCACTGCAAAC+AGG | 0.474408 | 3.1:-44669097 | MS.gene94958:CDS |
ACCAACCAACCATGTCTCTT+GGG | 0.475457 | 3.1:-44673133 | None:intergenic |
ATATACCAAAGCATTTGAAA+TGG | 0.481529 | 3.1:-44665491 | MS.gene94958:CDS |
GCAGGTTTCCTTCTTGGACC+AGG | 0.481822 | 3.1:-44665767 | MS.gene94958:intron |
AGTTGTCATTGTAAATCTCC+AGG | 0.483911 | 3.1:-44668583 | MS.gene94958:intron |
ATGGAAACTTGCCCTTCTTG+TGG | 0.485023 | 3.1:-44670186 | MS.gene94958:CDS |
GCAGGATTCATCTCCTTTGG+AGG | 0.486166 | 3.1:+44669117 | None:intergenic |
ACAGGTAATTTCAGGTGTCA+TGG | 0.486838 | 3.1:-44667503 | MS.gene94958:intron |
AGTTCAGAAAGTTTCTCCCT+TGG | 0.488171 | 3.1:+44670225 | None:intergenic |
TTAAGGATACAGTTCTTGAC+TGG | 0.488201 | 3.1:-44669713 | MS.gene94958:CDS |
GGCAGATATAGTGTTATGCT+TGG | 0.489447 | 3.1:-44669076 | MS.gene94958:CDS |
GTCTCACCGTAAAATCAATT+GGG | 0.489745 | 3.1:+44665413 | None:intergenic |
GCACTACAATAATCTGGAAA+AGG | 0.493245 | 3.1:+44667440 | None:intergenic |
GGGCATGAGTACTTGCAACT+TGG | 0.493272 | 3.1:+44666912 | None:intergenic |
AAGGAGGAATCTGCATGTTA+AGG | 0.493664 | 3.1:+44667476 | None:intergenic |
GGCTCTGGTTGAATTAGAAA+AGG | 0.494266 | 3.1:-44670527 | MS.gene94958:CDS |
CCGCCGCGAAGTGCTTTAAG+AGG | 0.496230 | 3.1:+44668612 | None:intergenic |
CAATTGGGACATCAACTTCA+AGG | 0.501142 | 3.1:+44665428 | None:intergenic |
AATGCATCTTTAGTGATACA+TGG | 0.501453 | 3.1:-44668221 | MS.gene94958:CDS |
GGTTGCTTATCCAGAATGGC+TGG | 0.502862 | 3.1:+44665733 | None:intergenic |
TTAAGAGGCAAGTTGCATGC+TGG | 0.507879 | 3.1:+44668627 | None:intergenic |
TAGTGTTATGCTTGGGAACA+AGG | 0.510252 | 3.1:-44669068 | MS.gene94958:intron |
CTTAAAGCACTTCGCGGCGG+AGG | 0.514219 | 3.1:-44668609 | MS.gene94958:CDS |
AAGAGAAAAGATAGCTTGAC+TGG | 0.515176 | 3.1:-44664910 | MS.gene94958:CDS |
TTGGTATTCCAGATCGAAGA+TGG | 0.515541 | 3.1:+44670244 | None:intergenic |
GAAACCTTCCTGGTCCAAGA+AGG | 0.523720 | 3.1:+44665759 | None:intergenic |
GTTGCCAACATCTTCTATGT+AGG | 0.525670 | 3.1:+44673094 | None:intergenic |
CTGAAGCGTCCAAATCCCCT+TGG | 0.528209 | 3.1:+44670947 | None:intergenic |
TTTCAAGCAAAACGTGAGAT+GGG | 0.530323 | 3.1:+44673048 | None:intergenic |
TTTGAAGTTTGTTATCAGCC+AGG | 0.533474 | 3.1:-44670497 | MS.gene94958:intron |
GCAGATATAGTGTTATGCTT+GGG | 0.536601 | 3.1:-44669075 | MS.gene94958:CDS |
ATAGAAGATGTTGGCAACGT+TGG | 0.537656 | 3.1:-44673089 | MS.gene94958:CDS |
CTGGTTGAATTAGAAAAGGC+TGG | 0.539335 | 3.1:-44670523 | MS.gene94958:CDS |
CGCTGTTCGAATGCAAAATG+TGG | 0.543044 | 3.1:-44669744 | MS.gene94958:CDS |
GTTTCCTTCTTGGACCAGGA+AGG | 0.545728 | 3.1:-44665763 | MS.gene94958:CDS |
CGTACTCAGTTCCACAAGAA+GGG | 0.553930 | 3.1:+44670175 | None:intergenic |
TCGTACTCAGTTCCACAAGA+AGG | 0.554496 | 3.1:+44670174 | None:intergenic |
TGAAGCGTCCAAATCCCCTT+GGG | 0.555198 | 3.1:+44670948 | None:intergenic |
AGAATGCTGTTATCGAAAGA+AGG | 0.557097 | 3.1:-44665038 | MS.gene94958:CDS |
CTTTCCTACATAGAAGATGT+TGG | 0.557770 | 3.1:-44673098 | MS.gene94958:CDS |
AGAGCCATGTGAGTCAAGCT+TGG | 0.558595 | 3.1:+44670544 | None:intergenic |
GAGAAACTTTCTGAACTGCA+TGG | 0.561276 | 3.1:-44670219 | MS.gene94958:CDS |
ATGCATCTTTAGTGATACAT+GGG | 0.567208 | 3.1:-44668220 | MS.gene94958:CDS |
TAAGGGTAAATCCATATCAA+AGG | 0.568748 | 3.1:-44664854 | MS.gene94958:CDS |
CTCAGCATACCCAAGAGACA+TGG | 0.569078 | 3.1:+44673124 | None:intergenic |
AGAAACTTTCTGAACTGCAT+GGG | 0.573757 | 3.1:-44670218 | MS.gene94958:CDS |
AAATGGTTGCTTATCCAGAA+TGG | 0.574178 | 3.1:+44665729 | None:intergenic |
TTGCCTCTTAAAGCACTTCG+CGG | 0.576788 | 3.1:-44668615 | MS.gene94958:CDS |
GTCCCTGATTCTCTAACCAA+TGG | 0.580796 | 3.1:-44664943 | MS.gene94958:CDS |
GGTGCCAAGCTTGACTCACA+TGG | 0.585172 | 3.1:-44670548 | MS.gene94958:CDS |
CTCGCTTCTAGGTGTCAGGA+TGG | 0.594883 | 3.1:+44665014 | None:intergenic |
GCCTTTCATCAAGTCTGTCG+AGG | 0.598804 | 3.1:-44666876 | MS.gene94958:intron |
AATTGGGACATCAACTTCAA+GGG | 0.601492 | 3.1:+44665429 | None:intergenic |
AAAAGGTCAATCCTGATGAA+AGG | 0.602186 | 3.1:+44667457 | None:intergenic |
AAGCGTTCAAAAGCTTCTAA+GGG | 0.602950 | 3.1:-44664871 | MS.gene94958:CDS |
CACCATTGGTTAGAGAATCA+GGG | 0.604828 | 3.1:+44664941 | None:intergenic |
ACCTCGACAGACTTGATGAA+AGG | 0.605065 | 3.1:+44666875 | None:intergenic |
GTATTATTATTACAGCGTGA+AGG | 0.611963 | 3.1:-44670610 | MS.gene94958:intron |
GCAGGAATATCAACTTCTTG+TGG | 0.614506 | 3.1:-44670990 | MS.gene94958:CDS |
TGACTGGTACAAGTTCGTCT+AGG | 0.615225 | 3.1:-44664894 | MS.gene94958:CDS |
TAAGGATACAGTTCTTGACT+GGG | 0.617521 | 3.1:-44669712 | MS.gene94958:CDS |
TCTTCGATCTGGAATACCAA+GGG | 0.618478 | 3.1:-44670241 | MS.gene94958:CDS |
GCAATTGTTCAATCAAAATG+TGG | 0.625066 | 3.1:-44665063 | MS.gene94958:CDS |
TGGTAATGATGCTTCAGGCA+AGG | 0.625308 | 3.1:+44670582 | None:intergenic |
GAGTCAAGCTTGGCACCGCA+CGG | 0.627315 | 3.1:+44670554 | None:intergenic |
ATTCCAAAAGCTGAAAGACA+AGG | 0.629764 | 3.1:-44665085 | MS.gene94958:CDS |
ATCTTCGATCTGGAATACCA+AGG | 0.633384 | 3.1:-44670242 | MS.gene94958:CDS |
AGGTCAATCCTGATGAAAGG+AGG | 0.638554 | 3.1:+44667460 | None:intergenic |
TGATGGCTTCAACTTTGACA+AGG | 0.639258 | 3.1:-44665115 | MS.gene94958:CDS |
ACAGGACGCACTGCCTCCAA+AGG | 0.640969 | 3.1:-44669130 | MS.gene94958:intron |
AACATTGGTCACAACTGCAT+AGG | 0.641129 | 3.1:+44664984 | None:intergenic |
AACTCTTCAGAAAACCCCAA+AGG | 0.645308 | 3.1:-44668249 | MS.gene94958:intron |
GTAGTGCATGCTCTGAGCAA+TGG | 0.650209 | 3.1:-44667424 | MS.gene94958:intron |
TTTGCTGTAATGAACAACAT+TGG | 0.650477 | 3.1:+44664969 | None:intergenic |
TTGGTTTAAAGGAGACATCA+CGG | 0.662902 | 3.1:-44669767 | MS.gene94958:CDS |
ATCATTACCATTTCACCGTG+CGG | 0.672055 | 3.1:-44670569 | MS.gene94958:CDS |
CCTCTTAAAGCACTTCGCGG+CGG | 0.673751 | 3.1:-44668612 | MS.gene94958:CDS |
GGATACAGTTCTTGACTGGG+AGG | 0.685315 | 3.1:-44669709 | MS.gene94958:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 44664849 | 44673144 | 44664849 | ID=MS.gene94958 |
chr3.1 | mRNA | 44664849 | 44673144 | 44664849 | ID=MS.gene94958.t1;Parent=MS.gene94958 |
chr3.1 | exon | 44673046 | 44673144 | 44673046 | ID=MS.gene94958.t1.exon1;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44673046 | 44673144 | 44673046 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44671145 | 44671174 | 44671145 | ID=MS.gene94958.t1.exon2;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44671145 | 44671174 | 44671145 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44670947 | 44671039 | 44670947 | ID=MS.gene94958.t1.exon3;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44670947 | 44671039 | 44670947 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44670498 | 44670617 | 44670498 | ID=MS.gene94958.t1.exon4;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44670498 | 44670617 | 44670498 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44670180 | 44670280 | 44670180 | ID=MS.gene94958.t1.exon5;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44670180 | 44670280 | 44670180 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44669710 | 44669818 | 44669710 | ID=MS.gene94958.t1.exon6;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44669710 | 44669818 | 44669710 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44669069 | 44669148 | 44669069 | ID=MS.gene94958.t1.exon7;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44669069 | 44669148 | 44669069 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44668584 | 44668662 | 44668584 | ID=MS.gene94958.t1.exon8;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44668584 | 44668662 | 44668584 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44668208 | 44668261 | 44668208 | ID=MS.gene94958.t1.exon9;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44668208 | 44668261 | 44668208 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44667425 | 44667521 | 44667425 | ID=MS.gene94958.t1.exon10;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44667425 | 44667521 | 44667425 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44666877 | 44666959 | 44666877 | ID=MS.gene94958.t1.exon11;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44666877 | 44666959 | 44666877 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44665718 | 44665785 | 44665718 | ID=MS.gene94958.t1.exon12;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44665718 | 44665785 | 44665718 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44665420 | 44665522 | 44665420 | ID=MS.gene94958.t1.exon13;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44665420 | 44665522 | 44665420 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
chr3.1 | exon | 44664849 | 44665145 | 44664849 | ID=MS.gene94958.t1.exon14;Parent=MS.gene94958.t1 |
chr3.1 | CDS | 44664849 | 44665145 | 44664849 | ID=cds.MS.gene94958.t1;Parent=MS.gene94958.t1 |
Gene Sequence |
Protein sequence |