Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95233.t1 | XP_013446985.1 | 94.4 | 269 | 14 | 1 | 54 | 322 | 54 | 321 | 7.20E-81 | 310.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95233.t1 | Q9C5D3 | 82.9 | 164 | 26 | 1 | 54 | 217 | 76 | 237 | 5.8e-47 | 189.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95233.t1 | A0A072TUA8 | 94.4 | 269 | 14 | 1 | 54 | 322 | 54 | 321 | 5.2e-81 | 310.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049341 | MS.gene95233 | 0.822144 | 2.77E-53 | -1.69E-46 |
MS.gene050437 | MS.gene95233 | 0.820671 | 6.06E-53 | -1.69E-46 |
MS.gene050689 | MS.gene95233 | 0.836363 | 9.78E-57 | -1.69E-46 |
MS.gene050838 | MS.gene95233 | 0.808932 | 2.43E-50 | -1.69E-46 |
MS.gene052879 | MS.gene95233 | 0.819378 | 1.20E-52 | -1.69E-46 |
MS.gene052880 | MS.gene95233 | 0.814955 | 1.18E-51 | -1.69E-46 |
MS.gene053563 | MS.gene95233 | 0.809765 | 1.61E-50 | -1.69E-46 |
MS.gene055162 | MS.gene95233 | 0.840656 | 7.62E-58 | -1.69E-46 |
MS.gene05712 | MS.gene95233 | 0.808007 | 3.83E-50 | -1.69E-46 |
MS.gene057694 | MS.gene95233 | 0.816665 | 4.92E-52 | -1.69E-46 |
MS.gene058852 | MS.gene95233 | 0.804574 | 2.02E-49 | -1.69E-46 |
MS.gene058906 | MS.gene95233 | 0.800108 | 1.68E-48 | -1.69E-46 |
MS.gene059171 | MS.gene95233 | 0.82294 | 1.81E-53 | -1.69E-46 |
MS.gene05978 | MS.gene95233 | 0.826331 | 2.88E-54 | -1.69E-46 |
MS.gene061145 | MS.gene95233 | 0.815466 | 9.11E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95233.t1 | MTR_8g096700 | 93.818 | 275 | 16 | 1 | 48 | 322 | 48 | 321 | 1.38e-145 | 413 |
MS.gene95233.t1 | MTR_3g099030 | 53.137 | 271 | 88 | 6 | 52 | 322 | 35 | 266 | 1.48e-79 | 243 |
MS.gene95233.t1 | MTR_3g099040 | 51.736 | 288 | 102 | 4 | 52 | 322 | 35 | 302 | 2.07e-76 | 236 |
MS.gene95233.t1 | MTR_2g026685 | 49.451 | 273 | 103 | 5 | 50 | 322 | 32 | 269 | 4.88e-56 | 183 |
MS.gene95233.t1 | MTR_2g026685 | 49.451 | 273 | 103 | 5 | 50 | 322 | 33 | 270 | 5.02e-56 | 183 |
MS.gene95233.t1 | MTR_2g026685 | 48.106 | 264 | 102 | 5 | 59 | 322 | 1 | 229 | 1.16e-51 | 170 |
MS.gene95233.t1 | MTR_4g006650 | 68.000 | 125 | 37 | 1 | 52 | 176 | 168 | 289 | 4.89e-48 | 164 |
MS.gene95233.t1 | MTR_3g435930 | 36.162 | 271 | 111 | 6 | 53 | 322 | 28 | 237 | 1.94e-41 | 144 |
MS.gene95233.t1 | MTR_3g093020 | 35.897 | 312 | 157 | 11 | 19 | 321 | 6 | 283 | 8.61e-33 | 123 |
MS.gene95233.t1 | MTR_4g057765 | 30.686 | 277 | 163 | 5 | 54 | 322 | 69 | 324 | 1.23e-30 | 118 |
MS.gene95233.t1 | MTR_1g063210 | 33.529 | 340 | 174 | 9 | 26 | 322 | 3 | 333 | 4.61e-29 | 114 |
MS.gene95233.t1 | MTR_5g069180 | 36.810 | 163 | 91 | 2 | 54 | 216 | 56 | 206 | 1.59e-28 | 112 |
MS.gene95233.t1 | MTR_8g010540 | 34.386 | 285 | 149 | 11 | 37 | 321 | 18 | 264 | 1.02e-27 | 108 |
MS.gene95233.t1 | MTR_2g095480 | 35.329 | 167 | 103 | 3 | 50 | 216 | 64 | 225 | 1.53e-25 | 104 |
MS.gene95233.t1 | MTR_7g101930 | 34.343 | 198 | 100 | 3 | 43 | 217 | 5 | 195 | 1.35e-21 | 94.0 |
MS.gene95233.t1 | MTR_0041s0140 | 34.343 | 198 | 100 | 3 | 43 | 217 | 5 | 195 | 1.38e-21 | 92.4 |
MS.gene95233.t1 | MTR_8g018747 | 50.000 | 62 | 31 | 0 | 155 | 216 | 23 | 84 | 1.46e-14 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95233.t1 | AT5G50740 | 50.000 | 310 | 128 | 5 | 13 | 322 | 1 | 283 | 9.97e-82 | 249 |
MS.gene95233.t1 | AT5G50740 | 50.000 | 310 | 128 | 5 | 13 | 322 | 1 | 283 | 9.97e-82 | 249 |
MS.gene95233.t1 | AT5G63530 | 57.394 | 284 | 106 | 4 | 52 | 322 | 59 | 340 | 2.88e-77 | 240 |
MS.gene95233.t1 | AT5G63530 | 57.394 | 284 | 106 | 4 | 52 | 322 | 74 | 355 | 6.49e-77 | 239 |
MS.gene95233.t1 | AT5G50740 | 49.379 | 322 | 131 | 5 | 1 | 322 | 1 | 290 | 1.61e-76 | 236 |
MS.gene95233.t1 | AT3G02960 | 39.114 | 271 | 104 | 6 | 52 | 322 | 37 | 246 | 2.99e-50 | 167 |
MS.gene95233.t1 | AT5G50740 | 55.758 | 165 | 58 | 2 | 13 | 177 | 1 | 150 | 5.58e-45 | 151 |
MS.gene95233.t1 | AT5G50740 | 51.412 | 177 | 66 | 3 | 1 | 177 | 1 | 157 | 5.77e-40 | 138 |
MS.gene95233.t1 | AT5G24580 | 33.333 | 282 | 154 | 6 | 53 | 321 | 58 | 318 | 4.27e-32 | 122 |
MS.gene95233.t1 | AT5G24580 | 33.333 | 282 | 154 | 6 | 53 | 321 | 58 | 318 | 4.27e-32 | 122 |
MS.gene95233.t1 | AT5G24580 | 33.333 | 282 | 154 | 6 | 53 | 321 | 57 | 317 | 4.84e-32 | 122 |
MS.gene95233.t1 | AT5G24580 | 32.270 | 282 | 154 | 7 | 53 | 321 | 58 | 315 | 1.00e-28 | 113 |
MS.gene95233.t1 | AT5G03380 | 35.926 | 270 | 134 | 8 | 26 | 264 | 3 | 264 | 2.92e-28 | 113 |
MS.gene95233.t1 | AT2G36950 | 31.454 | 337 | 162 | 9 | 53 | 322 | 52 | 386 | 7.17e-28 | 112 |
MS.gene95233.t1 | AT5G03380 | 35.270 | 241 | 121 | 6 | 55 | 264 | 1 | 237 | 1.33e-25 | 105 |
MS.gene95233.t1 | AT5G60800 | 35.612 | 278 | 149 | 5 | 53 | 322 | 28 | 283 | 1.24e-22 | 95.9 |
MS.gene95233.t1 | AT5G60800 | 35.252 | 278 | 150 | 5 | 53 | 322 | 28 | 283 | 1.61e-21 | 93.2 |
MS.gene95233.t1 | AT5G24580 | 31.474 | 251 | 138 | 6 | 84 | 321 | 2 | 231 | 8.21e-21 | 89.7 |
MS.gene95233.t1 | AT1G29000 | 33.333 | 165 | 104 | 3 | 54 | 216 | 18 | 178 | 1.72e-19 | 87.0 |
MS.gene95233.t1 | AT1G29000 | 33.333 | 165 | 104 | 3 | 54 | 216 | 18 | 178 | 1.72e-19 | 87.0 |
MS.gene95233.t1 | AT2G28090 | 29.907 | 214 | 136 | 3 | 36 | 247 | 14 | 215 | 2.52e-16 | 77.4 |
Find 0 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTAATAATATTGTTTC+TGG | - | 57544:48744-48763 | MS.gene95233:CDS | 15.0% |
!! | CTTGATAAAATATTTGTAAG+TGG | - | 57544:49709-49728 | MS.gene95233:CDS | 20.0% |
!! | TAATGATTAATTGTTTGTGA+TGG | - | 57544:49065-49084 | MS.gene95233:CDS | 20.0% |
!! | TTAAAATTATATTCACATGC+AGG | - | 57544:49778-49797 | MS.gene95233:CDS | 20.0% |
!!! | AATATTATTTTAATCCACCA+AGG | - | 57544:50127-50146 | MS.gene95233:intron | 20.0% |
!!! | AGAAAAAAAGTGTAAAGAAA+AGG | + | 57544:49032-49051 | None:intergenic | 20.0% |
!!! | TTTTTGTTGTTGTTTTGAAT+AGG | - | 57544:48774-48793 | MS.gene95233:CDS | 20.0% |
!! | TTCTTCTTTTCTTCTTTCTT+CGG | + | 57544:48853-48872 | None:intergenic | 25.0% |
!! | TTTTCATCACTGAAAATTTG+AGG | + | 57544:50195-50214 | None:intergenic | 25.0% |
!!! | AGTTTTTTTCTCTTCTTCTT+TGG | + | 57544:49959-49978 | None:intergenic | 25.0% |
!!! | ATTTTTTTCTCTTGTTCTGA+AGG | + | 57544:49240-49259 | None:intergenic | 25.0% |
!!! | TCACTTTTATTTCATTCACT+TGG | - | 57544:49535-49554 | MS.gene95233:intron | 25.0% |
AAATCTGACAAATTCCTGAA+AGG | + | 57544:49585-49604 | None:intergenic | 30.0% | |
AAGACTTTAAGCACAATTTC+TGG | + | 57544:48940-48959 | None:intergenic | 30.0% | |
AAGGTGAAAAAGATCAGAAA+GGG | - | 57544:49983-50002 | MS.gene95233:CDS | 30.0% | |
AGAAGAAGAGAAAAAAACTG+AGG | - | 57544:49960-49979 | MS.gene95233:CDS | 30.0% | |
AGAATCACTATCATAACCTT+AGG | + | 57544:49405-49424 | None:intergenic | 30.0% | |
ATGATAAAATGATCCATCAC+AGG | + | 57544:49359-49378 | None:intergenic | 30.0% | |
GAATATGTTTACAAGAGAAC+TGG | - | 57544:49877-49896 | MS.gene95233:intron | 30.0% | |
TACATGATAGAACAAGCATT+TGG | + | 57544:50219-50238 | None:intergenic | 30.0% | |
TGTTGTTAAAGGAGAAAAAG+CGG | - | 57544:49137-49156 | MS.gene95233:intron | 30.0% | |
! | CTTGGTTTGATTCAATTATC+AGG | - | 57544:49553-49572 | MS.gene95233:intron | 30.0% |
!! | TCTTCTTCTTTGGTTTCTTT+TGG | + | 57544:49949-49968 | None:intergenic | 30.0% |
!!! | TATTTTAATCCACCAAGGTA+TGG | - | 57544:50132-50151 | MS.gene95233:intron | 30.0% |
!!! | TGTTTGTGATGGATTTTTCA+GGG | - | 57544:49076-49095 | MS.gene95233:CDS | 30.0% |
!!! | TTGTTTGTGATGGATTTTTC+AGG | - | 57544:49075-49094 | MS.gene95233:CDS | 30.0% |
!!! | TTTGGATGTTCTTTTTTCTC+TGG | + | 57544:49931-49950 | None:intergenic | 30.0% |
!!! | TTTTTTATCTGAACCTGTGA+TGG | - | 57544:49343-49362 | MS.gene95233:intron | 30.0% |
AAAGTCTTCATGCATTGTGA+AGG | - | 57544:48952-48971 | MS.gene95233:CDS | 35.0% | |
ACTCTTTCAAGAACCTTCAA+TGG | + | 57544:49165-49184 | None:intergenic | 35.0% | |
AGACGCATTGAGAAAATCAA+AGG | - | 57544:49468-49487 | MS.gene95233:CDS | 35.0% | |
ATAGGAAGAAAAGAAACCAG+AGG | - | 57544:48792-48811 | MS.gene95233:CDS | 35.0% | |
CATCACTGAAAATTTGAGGA+GGG | + | 57544:50191-50210 | None:intergenic | 35.0% | |
GAAGAGAAAAAAACTGAGGA+AGG | - | 57544:49964-49983 | MS.gene95233:CDS | 35.0% | |
GAAGGTGAAAAAGATCAGAA+AGG | - | 57544:49982-50001 | MS.gene95233:CDS | 35.0% | |
GACAGAAGAAGAGAAAAAAC+CGG | - | 57544:48891-48910 | MS.gene95233:CDS | 35.0% | |
TCATCACTGAAAATTTGAGG+AGG | + | 57544:50192-50211 | None:intergenic | 35.0% | |
TGACAAATTCCTGAAAGGAT+GGG | + | 57544:49580-49599 | None:intergenic | 35.0% | |
TTATTATATGGTGCAGCCTA+AGG | - | 57544:49386-49405 | MS.gene95233:intron | 35.0% | |
! | ACTTTAAGCACAATTTCTGG+CGG | + | 57544:48937-48956 | None:intergenic | 35.0% |
! | TACTGATTGCAAATCTCACA+AGG | - | 57544:49113-49132 | MS.gene95233:intron | 35.0% |
! | TCTCACAAGGTTGTTGTTAA+AGG | - | 57544:49126-49145 | MS.gene95233:intron | 35.0% |
! | TTCTTTTCTTCTTTCTTCGG+TGG | + | 57544:48850-48869 | None:intergenic | 35.0% |
!!! | GGTTTTTTCTCTTCTTCTGT+CGG | + | 57544:48892-48911 | None:intergenic | 35.0% |
!!! | GTTTGTGATGGATTTTTCAG+GGG | - | 57544:49077-49096 | MS.gene95233:CDS | 35.0% |
!!! | TTTTTCTCTTGTTCTGAAGG+TGG | + | 57544:49237-49256 | None:intergenic | 35.0% |
AAAAGGCAAAACTCTTCACC+TGG | + | 57544:49015-49034 | None:intergenic | 40.0% | |
AAAATTTGAGGAGGGTAAGC+TGG | + | 57544:50183-50202 | None:intergenic | 40.0% | |
AAAGTTCGTCGTTCACTCAA+AGG | - | 57544:48985-49004 | MS.gene95233:CDS | 40.0% | |
AACTCACTAGTGACAGTGAA+AGG | - | 57544:49829-49848 | MS.gene95233:intron | 40.0% | |
ACTAGTGAGTTCTTCAGATC+CGG | + | 57544:49820-49839 | None:intergenic | 40.0% | |
AGAAAAAGCGGATCCATTGA+AGG | - | 57544:49149-49168 | MS.gene95233:intron | 40.0% | |
AGAAGAAGAGAAAAAACCGG+AGG | - | 57544:48894-48913 | MS.gene95233:CDS | 40.0% | |
AGGTTCTTGAAAGAGTTCAG+AGG | - | 57544:49169-49188 | MS.gene95233:intron | 40.0% | |
AGTAGAGGAGAAAAAACCAG+AGG | - | 57544:48822-48841 | MS.gene95233:CDS | 40.0% | |
CTGACAAATTCCTGAAAGGA+TGG | + | 57544:49581-49600 | None:intergenic | 40.0% | |
GAAAAAACCGGAGGAATCTA+AGG | - | 57544:48903-48922 | MS.gene95233:CDS | 40.0% | |
GAAAAAGATCAGAAAGGGAG+TGG | - | 57544:49988-50007 | MS.gene95233:CDS | 40.0% | |
GGAAGAAAAGAAAGCTGAAG+AGG | - | 57544:49287-49306 | MS.gene95233:intron | 40.0% | |
GTAACTTCCTTAGATTCCTC+CGG | + | 57544:48913-48932 | None:intergenic | 40.0% | |
TAAAACTCCGTACCATACCT+TGG | + | 57544:50147-50166 | None:intergenic | 40.0% | |
TAATCCACCAAGGTATGGTA+CGG | - | 57544:50137-50156 | MS.gene95233:intron | 40.0% | |
! | TCAGCTTTCTTTTCTTCCTG+TGG | + | 57544:49285-49304 | None:intergenic | 40.0% |
! | TTCTTTTCTTCCTGTGGCTT+AGG | + | 57544:49279-49298 | None:intergenic | 40.0% |
! | TTTTTCTCTTCTTCTGTCGG+TGG | + | 57544:48889-48908 | None:intergenic | 40.0% |
!! | ACGGAGTTTTATGCATATCC+TGG | - | 57544:50156-50175 | MS.gene95233:intron | 40.0% |
!! | CTTGTTCTGAAGGTGGTTTA+GGG | + | 57544:49230-49249 | None:intergenic | 40.0% |
!! | TCTTGTTCTGAAGGTGGTTT+AGG | + | 57544:49231-49250 | None:intergenic | 40.0% |
ACCAGAGGAAACGAAAGTAG+AGG | - | 57544:48807-48826 | MS.gene95233:CDS | 45.0% | |
AGGAGTTGAATCAGCTGAAC+CGG | - | 57544:49798-49817 | MS.gene95233:intron | 45.0% | |
AGGTGGTGCAGAAGAAGTTA+AGG | - | 57544:50083-50102 | MS.gene95233:CDS | 45.0% | |
GAAAGAGAAACCTAAGCCAC+AGG | - | 57544:49266-49285 | MS.gene95233:intron | 45.0% | |
GATGGAAAACCAAGTGGTGA+TGG | - | 57544:50057-50076 | MS.gene95233:CDS | 45.0% | |
TCCTCTACTTTCGTTTCCTC+TGG | + | 57544:48811-48830 | None:intergenic | 45.0% | |
TCTGAAGGTGGTTTAGGGAT+CGG | + | 57544:49225-49244 | None:intergenic | 45.0% | |
TGCAGAAGAAGTTAAGGTGG+TGG | - | 57544:50089-50108 | MS.gene95233:CDS | 45.0% | |
TGGTGCAGAAGAAGTTAAGG+TGG | - | 57544:50086-50105 | MS.gene95233:CDS | 45.0% | |
TTATCAGGTCCCATCCTTTC+AGG | - | 57544:49568-49587 | MS.gene95233:intron | 45.0% | |
! | CGTTCACTCAAAGGTTTTCC+AGG | - | 57544:48994-49013 | MS.gene95233:CDS | 45.0% |
!!! | AGTTAAAATATTTTATAATA+AGG | + | 57544:49691-49710 | None:intergenic | 5.0% |
!!! | ATCATTTTTATTTTATTATA+TGG | - | 57544:49374-49393 | MS.gene95233:intron | 5.0% |
AACTCCGTACCATACCTTGG+TGG | + | 57544:50144-50163 | None:intergenic | 50.0% | |
AAGTGGTCCTGCAAGTGCAA+AGG | - | 57544:49726-49745 | MS.gene95233:CDS | 50.0% | |
AGTGGTCCTGCAAGTGCAAA+GGG | - | 57544:49727-49746 | MS.gene95233:CDS | 50.0% | |
GAGGGAGATGGAAAACCAAG+TGG | - | 57544:50051-50070 | MS.gene95233:CDS | 50.0% | |
GATCAGAAAGGGAGTGGTGA+AGG | - | 57544:49994-50013 | MS.gene95233:CDS | 50.0% | |
TCTTTCTTCGGTGGTTCCTC+TGG | + | 57544:48841-48860 | None:intergenic | 50.0% | |
!! | AAACCAAGTGGTGATGGAGG+AGG | - | 57544:50063-50082 | MS.gene95233:CDS | 50.0% |
!! | GGAAAACCAAGTGGTGATGG+AGG | - | 57544:50060-50079 | MS.gene95233:CDS | 50.0% |
GAAAGGGAGTGGTGAAGGAG+AGG | - | 57544:49999-50018 | MS.gene95233:CDS | 55.0% | |
GTCACACCCTTTGCACTTGC+AGG | + | 57544:49736-49755 | None:intergenic | 55.0% | |
CCACCTCCTCCATCACCACT+TGG | + | 57544:50069-50088 | None:intergenic | 60.0% | |
TGAGGAGGGTAAGCTGGACC+AGG | + | 57544:50177-50196 | None:intergenic | 60.0% | |
!! | CCAAGTGGTGATGGAGGAGG+TGG | - | 57544:50066-50085 | MS.gene95233:CDS | 60.0% |
AGCTGCAGCTGCAGCTGCAG+AGG | - | 57544:50032-50051 | MS.gene95233:CDS | 65.0% | |
GCTGCAGCTGCAGAGGGAGA+TGG | - | 57544:50039-50058 | MS.gene95233:CDS | 65.0% | |
GCTGCAGCTGCAGCTGCAGA+GGG | - | 57544:50033-50052 | MS.gene95233:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
57544 | gene | 48674 | 50239 | 48674 | ID=MS.gene95233 |
57544 | mRNA | 48674 | 50239 | 48674 | ID=MS.gene95233.t1;Parent=MS.gene95233 |
57544 | exon | 50231 | 50239 | 50231 | ID=MS.gene95233.t1.exon1;Parent=MS.gene95233.t1 |
57544 | CDS | 50231 | 50239 | 50231 | ID=cds.MS.gene95233.t1;Parent=MS.gene95233.t1 |
57544 | exon | 49898 | 50117 | 49898 | ID=MS.gene95233.t1.exon2;Parent=MS.gene95233.t1 |
57544 | CDS | 49898 | 50117 | 49898 | ID=cds.MS.gene95233.t1;Parent=MS.gene95233.t1 |
57544 | exon | 49605 | 49816 | 49605 | ID=MS.gene95233.t1.exon3;Parent=MS.gene95233.t1 |
57544 | CDS | 49605 | 49816 | 49605 | ID=cds.MS.gene95233.t1;Parent=MS.gene95233.t1 |
57544 | exon | 49424 | 49511 | 49424 | ID=MS.gene95233.t1.exon4;Parent=MS.gene95233.t1 |
57544 | CDS | 49424 | 49511 | 49424 | ID=cds.MS.gene95233.t1;Parent=MS.gene95233.t1 |
57544 | exon | 48674 | 49113 | 48674 | ID=MS.gene95233.t1.exon5;Parent=MS.gene95233.t1 |
57544 | CDS | 48674 | 49113 | 48674 | ID=cds.MS.gene95233.t1;Parent=MS.gene95233.t1 |
Gene Sequence |
Protein sequence |