Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052880.t1 | GAU37247.1 | 93.2 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 3.20E-72 | 281.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052880.t1 | Q99JH1 | 33.1 | 136 | 82 | 2 | 1 | 127 | 1 | 136 | 2.2e-13 | 77.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052880.t1 | A0A2Z6P4F2 | 93.2 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 2.3e-72 | 281.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene052880 | 0.842263 | 2.88E-58 | -1.69E-46 |
| MS.gene049340 | MS.gene052880 | 0.91568 | 4.41E-85 | -1.69E-46 |
| MS.gene049341 | MS.gene052880 | 0.90394 | 2.06E-79 | -1.69E-46 |
| MS.gene050020 | MS.gene052880 | 0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene052880 | 0.804507 | 2.09E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene052880 | 0.80894 | 2.42E-50 | -1.69E-46 |
| MS.gene052879 | MS.gene052880 | 0.988203 | 4.18E-173 | -1.69E-46 |
| MS.gene052880 | MS.gene053581 | 0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene055162 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene055891 | 0.803122 | 4.05E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene057705 | 0.806139 | 9.51E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene060587 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene061176 | 0.82123 | 4.51E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene061177 | 0.820966 | 5.19E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene061178 | 0.820754 | 5.80E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene061866 | 0.803589 | 3.24E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene061869 | 0.813014 | 3.17E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene061872 | 0.827739 | 1.32E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene061874 | 0.807492 | 4.92E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene061947 | 0.813257 | 2.81E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene062821 | 0.815652 | 8.28E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene063452 | 0.817228 | 3.68E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene06371 | 0.824761 | 6.77E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene066105 | 0.817552 | 3.11E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene067802 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene070943 | 0.809306 | 2.02E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene07100 | 0.809983 | 1.44E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene071315 | 0.801804 | 7.57E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene07147 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene07222 | 0.81272 | 3.68E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene072346 | 0.811087 | 8.34E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene074258 | 0.81465 | 1.38E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene08428 | 0.825201 | 5.33E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene20230 | 0.812493 | 4.12E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene20740 | 0.81765 | 2.95E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene21089 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene22968 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene23058 | 0.809728 | 1.64E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene24610 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene25435 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene25436 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene27668 | 0.808348 | 3.24E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene27991 | 0.80832 | 3.28E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene30863 | 0.810385 | 1.18E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene34369 | 0.80044 | 1.44E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene34718 | 0.831794 | 1.36E-55 | -1.69E-46 |
| MS.gene052880 | MS.gene35135 | 0.815678 | 8.17E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene36496 | 0.826151 | 3.18E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene40595 | 0.829485 | 5.01E-55 | -1.69E-46 |
| MS.gene052880 | MS.gene40919 | 0.825659 | 4.16E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene43992 | 0.807018 | 6.20E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene44141 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene47955 | 0.806514 | 7.93E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene49359 | 0.815763 | 7.83E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene50564 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene54919 | 0.836084 | 1.15E-56 | -1.69E-46 |
| MS.gene052880 | MS.gene55732 | 0.801872 | 7.34E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene55887 | 0.81771 | 2.86E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene56414 | 0.815732 | 7.95E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene64677 | 0.807914 | 4.00E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene68735 | 0.809328 | 2.00E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene69947 | 0.800169 | 1.63E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene70398 | 0.800331 | 1.52E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene71215 | 0.813501 | 2.48E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene71771 | 0.803095 | 4.11E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene73243 | 0.808714 | 2.70E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene76305 | -0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene80257 | 0.814162 | 1.77E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene83996 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene84455 | 0.807888 | 4.06E-50 | -1.69E-46 |
| MS.gene052880 | MS.gene86368 | 0.801786 | 7.64E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene86381 | 0.829825 | 4.14E-55 | -1.69E-46 |
| MS.gene052880 | MS.gene88680 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene052880 | MS.gene89036 | 0.823212 | 1.56E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene89562 | 0.819479 | 1.14E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene89721 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene90649 | 0.812704 | 3.71E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene90981 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene95233 | 0.814955 | 1.18E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene95800 | 0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene052880 | MS.gene97306 | 0.819926 | 8.98E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene97762 | 0.803668 | 3.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052880.t1 | MTR_3g095260 | 99.552 | 223 | 1 | 0 | 1 | 223 | 1 | 223 | 3.90e-161 | 445 |
| MS.gene052880.t1 | MTR_3g095240 | 95.045 | 222 | 11 | 0 | 1 | 222 | 1 | 222 | 7.92e-114 | 325 |
| MS.gene052880.t1 | MTR_3g095250 | 95.429 | 175 | 6 | 1 | 1 | 173 | 1 | 175 | 6.92e-104 | 300 |
| MS.gene052880.t1 | MTR_7g059030 | 66.197 | 142 | 48 | 0 | 1 | 142 | 1 | 142 | 8.03e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052880.t1 | AT1G76010 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 5.41e-73 | 225 |
| MS.gene052880.t1 | AT1G76010 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 5.41e-73 | 225 |
| MS.gene052880.t1 | AT1G20220 | 72.973 | 148 | 39 | 1 | 1 | 147 | 1 | 148 | 1.02e-69 | 216 |
| MS.gene052880.t1 | AT3G07030 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.04e-57 | 188 |
| MS.gene052880.t1 | AT3G07030 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.04e-57 | 188 |
| MS.gene052880.t1 | AT3G07030 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.26e-57 | 188 |
| MS.gene052880.t1 | AT3G07030 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 2.36e-57 | 187 |
| MS.gene052880.t1 | AT3G07030 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 2.65e-57 | 188 |
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGAAAGAAATTTTTAA+AGG | - | 20873:3654-3673 | MS.gene052880:intergenic | 10.0% |
| !!! | AATTGAAAGAAATTTTTAAA+GGG | - | 20873:3653-3672 | MS.gene052880:intergenic | 10.0% |
| !!! | ATTTTTAATTTATTCTTTGT+TGG | + | 20873:6056-6075 | MS.gene052880:intron | 10.0% |
| !!! | TAAAAATTTCTTTCAATTTT+TGG | + | 20873:3655-3674 | MS.gene052880:intron | 10.0% |
| !!! | TATTAACTAATGATATTTTT+TGG | - | 20873:3795-3814 | MS.gene052880:intergenic | 10.0% |
| !! | ATTGAAAACAAAAAGTTTAA+AGG | - | 20873:3682-3701 | MS.gene052880:intergenic | 15.0% |
| !!! | ATTTAACCCTTTAATTTTTA+AGG | - | 20873:3592-3611 | MS.gene052880:intergenic | 15.0% |
| !!! | GTTATTAAAACTTGAATTTT+TGG | - | 20873:3568-3587 | MS.gene052880:intergenic | 15.0% |
| !!! | TTTAACCCTTTAATTTTTAA+GGG | - | 20873:3591-3610 | MS.gene052880:intergenic | 15.0% |
| !! | AAAAAAAAAAACACTAAAGC+AGG | - | 20873:3712-3731 | MS.gene052880:intergenic | 20.0% |
| !! | AAAAAAAAAACACTAAAGCA+GGG | - | 20873:3711-3730 | MS.gene052880:intergenic | 20.0% |
| !! | AATAACCCCTTAAAAATTAA+AGG | + | 20873:3582-3601 | MS.gene052880:intron | 20.0% |
| !! | ATAACCCCTTAAAAATTAAA+GGG | + | 20873:3583-3602 | MS.gene052880:intron | 20.0% |
| !! | ATGTAACAAAAGAAGTTATT+TGG | - | 20873:3759-3778 | MS.gene052880:intergenic | 20.0% |
| !! | ATTAAGTAAACATTAACCAA+CGG | - | 20873:4603-4622 | MS.gene052880:intergenic | 20.0% |
| !! | ATTAGTTATTGTTACTAACT+TGG | - | 20873:3226-3245 | MS.gene052880:intergenic | 20.0% |
| !! | GCTAAATATATAGTTAAGAA+TGG | + | 20873:5419-5438 | MS.gene052880:intron | 20.0% |
| !! | TAAAGATAAAATAAGTACAG+AGG | - | 20873:5871-5890 | MS.gene052880:intergenic | 20.0% |
| !! | TTCGATATTAAAAAGACAAA+GGG | - | 20873:5662-5681 | MS.gene052880:intergenic | 20.0% |
| !!! | AAAACTTGAATTTTTGGTTT+AGG | - | 20873:3562-3581 | MS.gene052880:intergenic | 20.0% |
| !!! | AACTATAATTTTGAAACAGA+AGG | + | 20873:6250-6269 | MS.gene052880:intron | 20.0% |
| !!! | AATAATTTTTATCTTGCTAC+AGG | + | 20873:5455-5474 | MS.gene052880:intron | 20.0% |
| !!! | CTGTACTTATTTTATCTTTA+TGG | + | 20873:5871-5890 | MS.gene052880:intron | 20.0% |
| !!! | GTTTATGTATTTTAGAAACA+AGG | + | 20873:5691-5710 | MS.gene052880:intron | 20.0% |
| !!! | TCTGTTTTCTGTAATTATTA+AGG | + | 20873:5965-5984 | MS.gene052880:intron | 20.0% |
| !!! | TTAACCCTTTAATTTTTAAG+GGG | - | 20873:3590-3609 | MS.gene052880:intergenic | 20.0% |
| !!! | TTTTATGACATATAACTGAT+AGG | - | 20873:3932-3951 | MS.gene052880:intergenic | 20.0% |
| ! | AAAAATAACTAAGCCTATCA+AGG | - | 20873:5224-5243 | MS.gene052880:intergenic | 25.0% |
| ! | AAAATAACTAAGCCTATCAA+GGG | - | 20873:5223-5242 | MS.gene052880:intergenic | 25.0% |
| ! | AAAGCATATAGAACAAAATG+TGG | - | 20873:3471-3490 | MS.gene052880:intergenic | 25.0% |
| ! | AAATACAATAAACCTAGACA+AGG | + | 20873:4228-4247 | MS.gene052880:intron | 25.0% |
| ! | AAGTGAAAATAAGAAAGTGA+TGG | - | 20873:4547-4566 | MS.gene052880:intergenic | 25.0% |
| ! | AATACAATAAACCTAGACAA+GGG | + | 20873:4229-4248 | MS.gene052880:intron | 25.0% |
| ! | AGTGAAAATAAGAAAGTGAT+GGG | - | 20873:4546-4565 | MS.gene052880:intergenic | 25.0% |
| ! | ATTGACATCAGAAAATTTAG+AGG | + | 20873:3990-4009 | MS.gene052880:intron | 25.0% |
| ! | CAAATCTTACAGAATTACAA+CGG | - | 20873:5384-5403 | MS.gene052880:intergenic | 25.0% |
| ! | CTACACAATCTATTCTTTAT+AGG | + | 20873:6456-6475 | MS.gene052880:intron | 25.0% |
| ! | GTAAAGGTGATATATTTAGA+GGG | - | 20873:3622-3641 | MS.gene052880:intergenic | 25.0% |
| ! | GTTCGATATTAAAAAGACAA+AGG | - | 20873:5663-5682 | MS.gene052880:intergenic | 25.0% |
| ! | GTTGTAATTCTGTAAGATTT+GGG | + | 20873:5383-5402 | MS.gene052880:intron | 25.0% |
| ! | TCGATATTAAAAAGACAAAG+GGG | - | 20873:5661-5680 | MS.gene052880:intergenic | 25.0% |
| ! | TCTTTATAGGAATGTACAAT+GGG | + | 20873:6469-6488 | MS.gene052880:intron | 25.0% |
| ! | TTACTTGAATGTGTTATCTT+TGG | + | 20873:5739-5758 | MS.gene052880:intron | 25.0% |
| ! | TTCTTTATAGGAATGTACAA+TGG | + | 20873:6468-6487 | MS.gene052880:intron | 25.0% |
| ! | TTGTAATTCTGTAAGATTTG+GGG | + | 20873:5384-5403 | MS.gene052880:intron | 25.0% |
| ! | TTTGCTTACTTAACTGTAAT+CGG | + | 20873:6351-6370 | MS.gene052880:intron | 25.0% |
| !! | AAAATCGAAGGAATTTTTGT+AGG | + | 20873:4017-4036 | MS.gene052880:intron | 25.0% |
| !! | AAATCGAAGGAATTTTTGTA+GGG | + | 20873:4018-4037 | MS.gene052880:intron | 25.0% |
| !! | ACAAAAATTCCTTCGATTTT+TGG | - | 20873:4017-4036 | MS.gene052880:intergenic | 25.0% |
| !! | TTTGATTGCTATTAATGCAT+TGG | + | 20873:5924-5943 | MS.gene052880:intron | 25.0% |
| !!! | CTTAAAGTTGGTATATTTAG+AGG | + | 20873:4048-4067 | MS.gene052880:intron | 25.0% |
| !!! | GAATTTTTGGTTTAGGAAAA+AGG | - | 20873:3555-3574 | MS.gene052880:intergenic | 25.0% |
| !!! | TGGTTTTATATAAATGTGAC+CGG | - | 20873:4183-4202 | MS.gene052880:intergenic | 25.0% |
| !!! | TTTTAAAAGCTCAGAAATTG+TGG | - | 20873:5559-5578 | MS.gene052880:intergenic | 25.0% |
| AACCAAAGAATAAGCAAATC+AGG | - | 20873:3387-3406 | MS.gene05288:intergenic | 30.0% | |
| AACTGATATAACTGACACAT+GGG | + | 20873:4938-4957 | MS.gene052880:CDS | 30.0% | |
| AAGATAGAAAACAGAAGTGA+TGG | + | 20873:4368-4387 | MS.gene052880:intron | 30.0% | |
| AATGATTACCGAGCTAATAA+AGG | + | 20873:4791-4810 | MS.gene052880:CDS | 30.0% | |
| ATAGGACGTTAAAATAGCAT+TGG | - | 20873:3914-3933 | MS.gene052880:intergenic | 30.0% | |
| ATGATTGAAACATAGCATCA+TGG | + | 20873:4204-4223 | MS.gene052880:intron | 30.0% | |
| ATTCAATGTCAATACATGCA+TGG | + | 20873:3311-3330 | MS.gene052880:intron | 30.0% | |
| ATTCTTTGGTTGAAATAGCT+TGG | + | 20873:3396-3415 | MS.gene052880:intron | 30.0% | |
| ATTGTGGTTCAATAAAACCT+TGG | - | 20873:5543-5562 | MS.gene052880:intergenic | 30.0% | |
| CAAATGATTTATGTGTGCAT+GGG | + | 20873:5019-5038 | MS.gene052880:intron | 30.0% | |
| CATACTTGTAAATCATGACT+GGG | - | 20873:5991-6010 | MS.gene052880:intergenic | 30.0% | |
| CGTAAAGGTGATATATTTAG+AGG | - | 20873:3623-3642 | MS.gene052880:intergenic | 30.0% | |
| CGTTGTAATTCTGTAAGATT+TGG | + | 20873:5382-5401 | MS.gene052880:intron | 30.0% | |
| CTGAAAACACAAATTTCACT+TGG | - | 20873:3434-3453 | MS.gene052880:intergenic | 30.0% | |
| CTTTATAGGAATGTACAATG+GGG | + | 20873:6470-6489 | MS.gene052880:intron | 30.0% | |
| GAAATTGTTGTCAAAGCAAT+GGG | + | 20873:4747-4766 | MS.gene052880:CDS | 30.0% | |
| GATGCTATGTTTCAATCATT+TGG | - | 20873:4203-4222 | MS.gene052880:intergenic | 30.0% | |
| GTGAAAATAAGAAAGTGATG+GGG | - | 20873:4545-4564 | MS.gene052880:intergenic | 30.0% | |
| TAGGGACTAAAACTTAAAGT+TGG | + | 20873:4036-4055 | MS.gene052880:intron | 30.0% | |
| TCAAATGATTTATGTGTGCA+TGG | + | 20873:5018-5037 | MS.gene052880:intron | 30.0% | |
| TCGTCTTCATATTCATTCAA+AGG | - | 20873:6153-6172 | MS.gene052880:intergenic | 30.0% | |
| TGAAAATAAGAAAGTGATGG+GGG | - | 20873:4544-4563 | MS.gene052880:intergenic | 30.0% | |
| TGAAATTGTTGTCAAAGCAA+TGG | + | 20873:4746-4765 | MS.gene052880:CDS | 30.0% | |
| TGTCATAAAAAAATGTCGCT+TGG | + | 20873:3942-3961 | MS.gene052880:intron | 30.0% | |
| TGTTGAATCAGAATTGAGAA+AGG | + | 20873:5516-5535 | MS.gene052880:intron | 30.0% | |
| TTAAAGGGACTAAAACGTAA+AGG | - | 20873:3638-3657 | MS.gene052880:intergenic | 30.0% | |
| TTAATAGGACTATCTGCTTT+GGG | - | 20873:3134-3153 | MS.gene052880:intergenic | 30.0% | |
| TTCAATGTCAATACATGCAT+GGG | + | 20873:3312-3331 | MS.gene052880:intron | 30.0% | |
| TTGAATGAATATGAAGACGA+AGG | + | 20873:6153-6172 | MS.gene052880:CDS | 30.0% | |
| TTTATAGGAATGTACAATGG+GGG | + | 20873:6471-6490 | MS.gene052880:intron | 30.0% | |
| ! | ATCACTTCTGTTTTCTATCT+TGG | - | 20873:4369-4388 | MS.gene052880:intergenic | 30.0% |
| ! | GAAAAAGGTATAAGGATACA+AGG | - | 20873:3540-3559 | MS.gene052880:intergenic | 30.0% |
| ! | TATATTTTCGTTCTTTCCGT+TGG | + | 20873:4584-4603 | MS.gene052880:intron | 30.0% |
| ! | TGGTTTAGGAAAAAGGTATA+AGG | - | 20873:3548-3567 | MS.gene052880:intergenic | 30.0% |
| !! | AAGAAGTGTATGTGTTTTAG+AGG | + | 20873:3349-3368 | MS.gene052880:intron | 30.0% |
| !!! | TGTCTAATATGCCATTTTTG+TGG | - | 20873:4480-4499 | MS.gene052880:intergenic | 30.0% |
| AAAAATGCCAACCAATTCAC+TGG | - | 20873:4836-4855 | MS.gene05288:intergenic | 35.0% | |
| AATGAATATGAAGACGAAGG+AGG | + | 20873:6156-6175 | MS.gene052880:CDS | 35.0% | |
| ACAATATCATGTAAAGAGCC+TGG | + | 20873:4263-4282 | MS.gene052880:intron | 35.0% | |
| AGAGGAAACAAAAAGCCATA+CGG | - | 20873:4987-5006 | MS.gene052880:intergenic | 35.0% | |
| ATTACCGAGCTAATAAAGGT+GGG | + | 20873:4795-4814 | MS.gene052880:intron | 35.0% | |
| ATTTCTATTCACCCTTGTCT+AGG | - | 20873:4243-4262 | MS.gene052880:intergenic | 35.0% | |
| CAACTGATATAACTGACACA+TGG | + | 20873:4937-4956 | MS.gene052880:CDS | 35.0% | |
| CATTTGACAAGATAGCATAG+AGG | - | 20873:5005-5024 | MS.gene052880:intergenic | 35.0% | |
| CCAGTCATGATTTACAAGTA+TGG | + | 20873:5989-6008 | MS.gene052880:intron | 35.0% | |
| CCATACTTGTAAATCATGAC+TGG | - | 20873:5992-6011 | MS.gene052880:intergenic | 35.0% | |
| CTTAGTCAACTCCACAAAAA+TGG | + | 20873:4466-4485 | MS.gene052880:intron | 35.0% | |
| CTTTCTACTTGTTTCAGAGA+AGG | + | 20873:4880-4899 | MS.gene052880:intron | 35.0% | |
| GATATCTCTATCCAGTGAAT+TGG | + | 20873:4822-4841 | MS.gene052880:intron | 35.0% | |
| GCAATCAAAAGCGAAACTAA+AGG | - | 20873:5913-5932 | MS.gene052880:intergenic | 35.0% | |
| GGAACATGAAACGTAAACAT+TGG | - | 20873:3738-3757 | MS.gene052880:intergenic | 35.0% | |
| GTGTTCACAAAACAAAGAGA+CGG | - | 20873:5639-5658 | MS.gene052880:intergenic | 35.0% | |
| GTTAATAGGACTATCTGCTT+TGG | - | 20873:3135-3154 | MS.gene052880:intergenic | 35.0% | |
| GTTACTAACTTGGAAAAGAG+TGG | - | 20873:3216-3235 | MS.gene052880:intergenic | 35.0% | |
| TCAATGTCAATACATGCATG+GGG | + | 20873:3313-3332 | MS.gene052880:intron | 35.0% | |
| TGTTCACAAAACAAAGAGAC+GGG | - | 20873:5638-5657 | MS.gene052880:intergenic | 35.0% | |
| TTGGTTGAAATAGCTTGGAT+TGG | + | 20873:3401-3420 | MS.gene052880:intron | 35.0% | |
| TTGTTTCAGAGAAGGATTGT+TGG | + | 20873:4888-4907 | MS.gene052880:intron | 35.0% | |
| TTTAGAGGACCAAAAATCGA+AGG | + | 20873:4005-4024 | MS.gene052880:intron | 35.0% | |
| ! | AAAGGTTTTACTTGATCAGC+AGG | - | 20873:6135-6154 | MS.gene052880:intergenic | 35.0% |
| ! | ATTGTTACTCTCCTTTTACC+AGG | - | 20873:4284-4303 | MS.gene052880:intergenic | 35.0% |
| ! | CATTTTTGTGGAGTTGACTA+AGG | - | 20873:4468-4487 | MS.gene052880:intergenic | 35.0% |
| ! | TCAACATGTGTGTTTTCTGT+AGG | + | 20873:4710-4729 | MS.gene052880:intron | 35.0% |
| ! | TGTGTTTTACTTGCTCAGTT+TGG | + | 20873:5059-5078 | MS.gene052880:intron | 35.0% |
| !! | CTGACAGTCTATTTCTATCT+TGG | - | 20873:4417-4436 | MS.gene052880:intergenic | 35.0% |
| !! | TATGGAATATGGTGATGGTT+GGG | + | 20873:6494-6513 | MS.gene052880:CDS | 35.0% |
| !! | TGCCTGATTTGCTTATTCTT+TGG | + | 20873:3382-3401 | MS.gene052880:intron | 35.0% |
| ACAAAAAGCCATACGGAAGA+AGG | - | 20873:4980-4999 | MS.gene052880:intergenic | 40.0% | |
| ACACTATCTTCAGTCGTTGT+GGG | + | 20873:4497-4516 | MS.gene052880:intron | 40.0% | |
| ACTAAGCCTATCAAGGGATA+AGG | - | 20873:5217-5236 | MS.gene052880:intergenic | 40.0% | |
| CAATGTCAATACATGCATGG+GGG | + | 20873:3314-3333 | MS.gene052880:intron | 40.0% | |
| CATGTAAAGAGCCTGGTAAA+AGG | + | 20873:4270-4289 | MS.gene052880:intron | 40.0% | |
| CGGATCTCATTCTCGTTAAT+AGG | - | 20873:3149-3168 | MS.gene052880:intergenic | 40.0% | |
| CTAAGGCCTAAAACCTAAGA+TGG | - | 20873:4451-4470 | MS.gene052880:intergenic | 40.0% | |
| CTGCATCAGAACACTCAAAT+TGG | + | 20873:4912-4931 | MS.gene052880:CDS | 40.0% | |
| CTTACAGAATTACAACGGCT+AGG | - | 20873:5379-5398 | MS.gene052880:intergenic | 40.0% | |
| GATATCTGCATGAGGAAATC+AGG | - | 20873:6101-6120 | MS.gene052880:intergenic | 40.0% | |
| GATTACCGAGCTAATAAAGG+TGG | + | 20873:4794-4813 | MS.gene052880:intron | 40.0% | |
| TACGTTGTCAAAGAAAGAGC+TGG | + | 20873:5113-5132 | MS.gene052880:CDS | 40.0% | |
| TAGATGCCTTATCCCTTGAT+AGG | + | 20873:5208-5227 | MS.gene052880:intron | 40.0% | |
| TCAGAATTGAGAAAGGACCA+AGG | + | 20873:5523-5542 | MS.gene052880:intron | 40.0% | |
| TCTCTATCCAGTGAATTGGT+TGG | + | 20873:4826-4845 | MS.gene052880:intron | 40.0% | |
| TTACCGAGCTAATAAAGGTG+GGG | + | 20873:4796-4815 | MS.gene052880:intron | 40.0% | |
| TTTACTTGATCAGCAGGAAG+AGG | - | 20873:6129-6148 | MS.gene052880:intergenic | 40.0% | |
| ! | AAATAAGAAAGTGATGGGGG+AGG | - | 20873:4541-4560 | MS.gene052880:intergenic | 40.0% |
| ! | AAATAGACTGTCAGAGCATC+TGG | + | 20873:4423-4442 | MS.gene052880:intron | 40.0% |
| ! | ACCTTTGACTTCAAACAGAG+CGG | + | 20873:5825-5844 | MS.gene052880:intron | 40.0% |
| ! | CTGGTACCATCTTAGGTTTT+AGG | + | 20873:4442-4461 | MS.gene052880:intron | 40.0% |
| ! | GTGTGTTTTCTGTAGGAGAA+AGG | + | 20873:4717-4736 | MS.gene052880:intron | 40.0% |
| ! | TACAATGGGGGTATGGAATA+TGG | + | 20873:6483-6502 | MS.gene052880:CDS | 40.0% |
| ! | TCATGAAAGTACATACCCTG+TGG | - | 20873:5148-5167 | MS.gene052880:intergenic | 40.0% |
| ! | TTCTGTAAGATTTGGGGTCA+CGG | + | 20873:5390-5409 | MS.gene052880:intron | 40.0% |
| !! | GTATGGAATATGGTGATGGT+TGG | + | 20873:6493-6512 | MS.gene052880:CDS | 40.0% |
| ACAAAACAAAGAGACGGGTG+AGG | - | 20873:5633-5652 | MS.gene052880:intergenic | 45.0% | |
| ACATGGGAACCACTAGAAGA+AGG | + | 20873:4954-4973 | MS.gene052880:CDS | 45.0% | |
| AGGAATGTACAATGGGGGTA+TGG | + | 20873:6476-6495 | MS.gene052880:intron | 45.0% | |
| AGTGCACTGTCTAGAAAGAC+CGG | + | 20873:4161-4180 | MS.gene052880:intron | 45.0% | |
| GACACTATCTTCAGTCGTTG+TGG | + | 20873:4496-4515 | MS.gene052880:intron | 45.0% | |
| GTTTCTCATCCTTCCTTGAG+TGG | - | 20873:3177-3196 | MS.gene052880:intergenic | 45.0% | |
| TACCGAGCTAATAAAGGTGG+GGG | + | 20873:4797-4816 | MS.gene052880:intron | 45.0% | |
| TTGAAACAGAAGGCTCACCA+AGG | + | 20873:6260-6279 | MS.gene052880:intron | 45.0% | |
| ! | AAAGTGATGGGGGAGGATAT+TGG | - | 20873:4534-4553 | MS.gene052880:intergenic | 45.0% |
| ! | AAGTGATGGGGGAGGATATT+GGG | - | 20873:4533-4552 | MS.gene052880:intergenic | 45.0% |
| ! | ACCGCTCTGTTTGAAGTCAA+AGG | - | 20873:5829-5848 | MS.gene052880:intergenic | 45.0% |
| ! | AGAGCATCTGGTACCATCTT+AGG | + | 20873:4435-4454 | MS.gene052880:intron | 45.0% |
| ! | GTGCATGGGTGTGATTGTTT+TGG | + | 20873:5033-5052 | MS.gene052880:intron | 45.0% |
| ! | TCCTTCCTTGAGTGGTAATG+CGG | - | 20873:3169-3188 | MS.gene052880:intergenic | 45.0% |
| ! | TGAAAGTACATACCCTGTGG+AGG | - | 20873:5145-5164 | MS.gene052880:intergenic | 45.0% |
| !! | AGGAGGTTGATATCTGCATG+AGG | - | 20873:6109-6128 | MS.gene052880:intergenic | 45.0% |
| !! | GAATATGGTGATGGTTGGGA+TGG | + | 20873:6498-6517 | MS.gene052880:CDS | 45.0% |
| AAACAAAGAGACGGGTGAGG+TGG | - | 20873:5630-5649 | MS.gene05288:intergenic | 50.0% | |
| AACAAAGAGACGGGTGAGGT+GGG | - | 20873:5629-5648 | MS.gene05288:intergenic | 50.0% | |
| ACTTGATCAGCAGGAAGAGG+AGG | - | 20873:6126-6145 | MS.gene052880:intergenic | 50.0% | |
| AGCTGGATACATCCTCCACA+GGG | + | 20873:5130-5149 | MS.gene052880:CDS | 50.0% | |
| CCAGTTGGGCAGTATGACTA+TGG | + | 20873:6603-6622 | MS.gene052880:CDS | 50.0% | |
| CCATAGTCATACTGCCCAAC+TGG | - | 20873:6606-6625 | MS.gene052880:intergenic | 50.0% | |
| GAAGAAGGCCTTCTTCCGTA+TGG | + | 20873:4969-4988 | MS.gene052880:intron | 50.0% | |
| GACCCCCACCTTTATTAGCT+CGG | - | 20873:4802-4821 | MS.gene052880:intergenic | 50.0% | |
| GAGATCCGCATTACCACTCA+AGG | + | 20873:3161-3180 | MS.gene052880:CDS | 50.0% | |
| GGAAGAAGGCCTTCTTCTAG+TGG | - | 20873:4966-4985 | MS.gene052880:intergenic | 50.0% | |
| TCCGCATTACCACTCAAGGA+AGG | + | 20873:3165-3184 | MS.gene052880:CDS | 50.0% | |
| TCTTCAGTCGTTGTGGGACT+TGG | + | 20873:4503-4522 | MS.gene052880:intron | 50.0% | |
| ! | GAAAAGCATGACCCCATGCA+CGG | - | 20873:6554-6573 | MS.gene052880:intergenic | 50.0% |
| ! | GGGGGTATGGAATATGGTGA+TGG | + | 20873:6489-6508 | MS.gene052880:CDS | 50.0% |
| !! | TATGGTGATGGTTGGGATGG+TGG | + | 20873:6501-6520 | MS.gene052880:CDS | 50.0% |
| AAGGATGCGAGGAAGGGGAA+GGG | + | 20873:6279-6298 | MS.gene052880:CDS | 55.0% | |
| ACAAAGAGACGGGTGAGGTG+GGG | - | 20873:5628-5647 | MS.gene052880:intergenic | 55.0% | |
| AGTCATACTGCCCAACTGGC+TGG | - | 20873:6602-6621 | MS.gene052880:intergenic | 55.0% | |
| CTCACCAAGGATGCGAGGAA+GGG | + | 20873:6273-6292 | MS.gene052880:CDS | 55.0% | |
| GAGCTGGATACATCCTCCAC+AGG | + | 20873:5129-5148 | MS.gene052880:CDS | 55.0% | |
| GGTGAGGTGGGGGATAGATA+AGG | - | 20873:5617-5636 | MS.gene052880:intergenic | 55.0% | |
| GTCATACTGCCCAACTGGCT+GGG | - | 20873:6601-6620 | MS.gene052880:intergenic | 55.0% | |
| TACATGCATGGGGGTCGTGT+TGG | + | 20873:3323-3342 | MS.gene052880:intron | 55.0% | |
| TCACCAAGGATGCGAGGAAG+GGG | + | 20873:6274-6293 | MS.gene052880:CDS | 55.0% | |
| ! | ATGCTTTTCGTGGACGGGGA+CGG | + | 20873:6565-6584 | MS.gene052880:CDS | 55.0% |
| ! | CTTTGGGTTTCTCCACCCTC+TGG | - | 20873:3118-3137 | MS.gene052880:intergenic | 55.0% |
| ! | GCATGGGGTCATGCTTTTCG+TGG | + | 20873:6555-6574 | MS.gene052880:CDS | 55.0% |
| ! | GGGGTCATGCTTTTCGTGGA+CGG | + | 20873:6559-6578 | MS.gene052880:CDS | 55.0% |
| ! | GGGTCATGCTTTTCGTGGAC+GGG | + | 20873:6560-6579 | MS.gene052880:CDS | 55.0% |
| ! | GGTCATGCTTTTCGTGGACG+GGG | + | 20873:6561-6580 | MS.gene052880:CDS | 55.0% |
| AAGGGGAAGGGGTCGTGGAA+GGG | + | 20873:6291-6310 | MS.gene052880:CDS | 60.0% | |
| AGGATGCGAGGAAGGGGAAG+GGG | + | 20873:6280-6299 | MS.gene052880:CDS | 60.0% | |
| CAAAGAGACGGGTGAGGTGG+GGG | - | 20873:5627-5646 | MS.gene052880:intergenic | 60.0% | |
| CAAGGATGCGAGGAAGGGGA+AGG | + | 20873:6278-6297 | MS.gene052880:CDS | 60.0% | |
| CTTCCCCTTCCTCGCATCCT+TGG | - | 20873:6280-6299 | MS.gene052880:intergenic | 60.0% | |
| GAAGGCTCACCAAGGATGCG+AGG | + | 20873:6268-6287 | MS.gene052880:intron | 60.0% | |
| GACGTGGCTATGGTGGCAGA+GGG | + | 20873:6523-6542 | MS.gene052880:CDS | 60.0% | |
| GCTATGGTGCCCAGCCAGTT+GGG | + | 20873:6589-6608 | MS.gene052880:CDS | 60.0% | |
| GCTCACCAAGGATGCGAGGA+AGG | + | 20873:6272-6291 | MS.gene052880:CDS | 60.0% | |
| ! | TGCTTTTCGTGGACGGGGAC+GGG | + | 20873:6566-6585 | MS.gene052880:CDS | 60.0% |
| !! | GATGGTGGACGTGGCTATGG+TGG | + | 20873:6516-6535 | MS.gene052880:CDS | 60.0% |
| !! | GATGGTTGGGATGGTGGACG+TGG | + | 20873:6507-6526 | MS.gene052880:CDS | 60.0% |
| !! | TGGGATGGTGGACGTGGCTA+TGG | + | 20873:6513-6532 | MS.gene052880:CDS | 60.0% |
| AAGGGGTCGTGGAAGGGGCA+GGG | + | 20873:6297-6316 | MS.gene052880:CDS | 65.0% | |
| AGGGGAAGGGGTCGTGGAAG+GGG | + | 20873:6292-6311 | MS.gene052880:CDS | 65.0% | |
| AGGGGCAGGGGTAGAGGTAG+AGG | + | 20873:6310-6329 | MS.gene052880:CDS | 65.0% | |
| GAAGGGGAAGGGGTCGTGGA+AGG | + | 20873:6290-6309 | MS.gene052880:CDS | 65.0% | |
| GGACGTGGCTATGGTGGCAG+AGG | + | 20873:6522-6541 | MS.gene052880:CDS | 65.0% | |
| GGCTATGGTGCCCAGCCAGT+TGG | + | 20873:6588-6607 | MS.gene052880:CDS | 65.0% | |
| ! | GCTTTTCGTGGACGGGGACG+GGG | + | 20873:6567-6586 | MS.gene052880:CDS | 65.0% |
| AGGGGTCGTGGAAGGGGCAG+GGG | + | 20873:6298-6317 | MS.gene052880:CDS | 70.0% | |
| CGAGGAAGGGGAAGGGGTCG+TGG | + | 20873:6286-6305 | MS.gene052880:CDS | 70.0% | |
| CGTGGAAGGGGCAGGGGTAG+AGG | + | 20873:6304-6323 | MS.gene052880:CDS | 70.0% | |
| GAAGGGGTCGTGGAAGGGGC+AGG | + | 20873:6296-6315 | MS.gene052880:CDS | 70.0% | |
| ! | AGAGGGCGCGTCCGTGCATG+GGG | + | 20873:6540-6559 | MS.gene052880:CDS | 70.0% |
| ! | CAGAGGGCGCGTCCGTGCAT+GGG | + | 20873:6539-6558 | MS.gene052880:CDS | 70.0% |
| CGTGGACGGGGACGGGGCTA+TGG | + | 20873:6573-6592 | MS.gene052880:CDS | 75.0% | |
| ! | GCAGAGGGCGCGTCCGTGCA+TGG | + | 20873:6538-6557 | MS.gene052880:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20873 | gene | 3104 | 6654 | 3104 | ID=MS.gene052880 |
| 20873 | mRNA | 3104 | 6654 | 3104 | ID=MS.gene052880.t1;Parent=MS.gene052880 |
| 20873 | exon | 3104 | 3226 | 3104 | ID=MS.gene052880.t1.exon1;Parent=MS.gene052880.t1 |
| 20873 | CDS | 3104 | 3226 | 3104 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| 20873 | exon | 4732 | 4812 | 4732 | ID=MS.gene052880.t1.exon2;Parent=MS.gene052880.t1 |
| 20873 | CDS | 4732 | 4812 | 4732 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| 20873 | exon | 4897 | 4985 | 4897 | ID=MS.gene052880.t1.exon3;Parent=MS.gene052880.t1 |
| 20873 | CDS | 4897 | 4985 | 4897 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| 20873 | exon | 5077 | 5151 | 5077 | ID=MS.gene052880.t1.exon4;Parent=MS.gene052880.t1 |
| 20873 | CDS | 5077 | 5151 | 5077 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| 20873 | exon | 6116 | 6177 | 6116 | ID=MS.gene052880.t1.exon5;Parent=MS.gene052880.t1 |
| 20873 | CDS | 6116 | 6177 | 6116 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| 20873 | exon | 6269 | 6331 | 6269 | ID=MS.gene052880.t1.exon6;Parent=MS.gene052880.t1 |
| 20873 | CDS | 6269 | 6331 | 6269 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| 20873 | exon | 6478 | 6654 | 6478 | ID=MS.gene052880.t1.exon7;Parent=MS.gene052880.t1 |
| 20873 | CDS | 6478 | 6654 | 6478 | ID=cds.MS.gene052880.t1;Parent=MS.gene052880.t1 |
| Gene Sequence |
| Protein sequence |
