Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95467.t1 | XP_003590727.2 | 95.4 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 2.10E-130 | 474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95467.t1 | Q8RYE9 | 68.2 | 223 | 69 | 1 | 19 | 239 | 23 | 245 | 7.8e-89 | 328.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95467.t1 | G7I2P1 | 95.4 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 1.5e-130 | 474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene95467 | 0.806902 | 6.56E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene95467 | 0.807453 | 5.02E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene95467 | 0.801079 | 1.07E-48 | -1.69E-46 |
| MS.gene053912 | MS.gene95467 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene054927 | MS.gene95467 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene055486 | MS.gene95467 | 0.812924 | 3.32E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene95467 | 0.802493 | 5.46E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene95467 | 0.810905 | 9.14E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene95467 | 0.81449 | 1.50E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene95467 | 0.803092 | 4.11E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene95467 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene95467 | 0.819171 | 1.34E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene95467 | 0.805279 | 1.44E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene95467 | 0.806662 | 7.38E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene95467 | 0.803882 | 2.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95467.t1 | MTR_1g073140 | 95.397 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 1.87e-174 | 479 |
| MS.gene95467.t1 | MTR_1g073140 | 91.915 | 235 | 17 | 1 | 1 | 235 | 1 | 233 | 5.60e-162 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95467.t1 | AT2G33255 | 68.161 | 223 | 69 | 1 | 19 | 239 | 23 | 245 | 1.20e-115 | 331 |
Find 59 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCACTTACATCATCTTTA+AGG | 0.144402 | 1.3:-52574289 | None:intergenic |
| ATTTATTCCACCAACGCTTT+GGG | 0.274021 | 1.3:+52573606 | MS.gene95467:CDS |
| GAAATCGACATTAGCATATT+CGG | 0.286039 | 1.3:-52574901 | None:intergenic |
| TTCTTGATTCAAAGAAAATT+AGG | 0.286367 | 1.3:+52573546 | MS.gene95467:CDS |
| TACTGCATATCTGTTCTCTT+TGG | 0.304882 | 1.3:+52574228 | MS.gene95467:CDS |
| ATTTACTACCAGGCATGATT+TGG | 0.318202 | 1.3:-52573438 | None:intergenic |
| GATTTATTCCACCAACGCTT+TGG | 0.319915 | 1.3:+52573605 | MS.gene95467:CDS |
| GACGCCACGGAGGCGCGTTT+TGG | 0.336627 | 1.3:-52573203 | None:intergenic |
| ACTGCATATCTGTTCTCTTT+GGG | 0.358743 | 1.3:+52574229 | MS.gene95467:CDS |
| AAAATGAGCAATGGTATCAT+AGG | 0.361847 | 1.3:-52573392 | None:intergenic |
| CCGACCATTACTACTTCATT+TGG | 0.368014 | 1.3:-52574260 | None:intergenic |
| AGGGAAGTTACCTTGAAATC+TGG | 0.368119 | 1.3:-52574927 | None:intergenic |
| AAATCGACATTAGCATATTC+GGG | 0.370379 | 1.3:-52574900 | None:intergenic |
| GGAGCTGGATCAGGTTTATA+AGG | 0.385703 | 1.3:-52574203 | None:intergenic |
| CGATTTCAAACCAGATTTCA+AGG | 0.418712 | 1.3:+52574917 | MS.gene95467:CDS |
| ACTTGTCTGCTTGATCAAAC+TGG | 0.423784 | 1.3:+52574864 | MS.gene95467:CDS |
| ATTGCTTGTGGAGGGCGAGC+AGG | 0.444789 | 1.3:+52574834 | MS.gene95467:CDS |
| TTAGGAGGGGTTTGATTACA+AGG | 0.448691 | 1.3:+52573564 | MS.gene95467:CDS |
| CAAATGAAGTAGTAATGGTC+GGG | 0.454036 | 1.3:+52574261 | MS.gene95467:CDS |
| TGCAGTAGTGGAGCTGGATC+AGG | 0.459438 | 1.3:-52574212 | None:intergenic |
| ATCAATTCCAGCAGGGTTTG+AGG | 0.476612 | 1.3:-52573323 | None:intergenic |
| TTCAAGATATCAATTCCAGC+AGG | 0.481890 | 1.3:-52573331 | None:intergenic |
| AACTGACCCCAAAGCGTTGG+TGG | 0.483746 | 1.3:-52573613 | None:intergenic |
| CAGATATGCAGTAGTGGAGC+TGG | 0.491301 | 1.3:-52574218 | None:intergenic |
| ACATGGTGCGTGGGAAGATA+AGG | 0.497472 | 1.3:-52573165 | None:intergenic |
| CGAAATTCCCTGCTTAATGC+TGG | 0.499413 | 1.3:-52574179 | None:intergenic |
| TACTACCAGGCATGATTTGG+AGG | 0.499592 | 1.3:-52573435 | None:intergenic |
| GCCGAGTACTGCTTTGTACA+TGG | 0.510991 | 1.3:-52573275 | None:intergenic |
| GTCAAAGCCTCAAACCCTGC+TGG | 0.521374 | 1.3:+52573316 | MS.gene95467:CDS |
| GAGCAATGGTATCATAGGCT+TGG | 0.543525 | 1.3:-52573387 | None:intergenic |
| TTGATTCAAAGAAAATTAGG+AGG | 0.544314 | 1.3:+52573549 | MS.gene95467:CDS |
| TCTTGAAACTCATTGATCAC+TGG | 0.545427 | 1.3:+52573347 | MS.gene95467:CDS |
| TCAACCAAATGAAGTAGTAA+TGG | 0.553506 | 1.3:+52574256 | MS.gene95467:CDS |
| GATCACCTCCAAATCATGCC+TGG | 0.556305 | 1.3:+52573430 | MS.gene95467:CDS |
| AGGGAAATCAATGACGGGGA+CGG | 0.561282 | 1.3:-52573251 | None:intergenic |
| TCCATGTACAAAGCAGTACT+CGG | 0.569767 | 1.3:+52573274 | MS.gene95467:CDS |
| ATGGAAGGGAAATCAATGAC+GGG | 0.572088 | 1.3:-52573256 | None:intergenic |
| AGTACTGCTTTGTACATGGA+AGG | 0.576818 | 1.3:-52573271 | None:intergenic |
| CCAAATGAAGTAGTAATGGT+CGG | 0.579295 | 1.3:+52574260 | MS.gene95467:CDS |
| TAGGCTTGGCGTTGTTGATG+TGG | 0.585097 | 1.3:-52573373 | None:intergenic |
| AGAGAACAGATATGCAGTAG+TGG | 0.586307 | 1.3:-52574224 | None:intergenic |
| GGTGGTTAAGTGTGATGACA+TGG | 0.587907 | 1.3:-52573182 | None:intergenic |
| TGATTCAAAGAAAATTAGGA+GGG | 0.590623 | 1.3:+52573550 | MS.gene95467:CDS |
| AAATGAAGTAGTAATGGTCG+GGG | 0.605638 | 1.3:+52574262 | MS.gene95467:CDS |
| AATTGAGTAAACTTCAGAGA+GGG | 0.606847 | 1.3:-52574946 | None:intergenic |
| TCAAGATATCAATTCCAGCA+GGG | 0.613019 | 1.3:-52573330 | None:intergenic |
| GATTCAAAGAAAATTAGGAG+GGG | 0.613293 | 1.3:+52573551 | MS.gene95467:CDS |
| CATGGAAGGGAAATCAATGA+CGG | 0.615972 | 1.3:-52573257 | None:intergenic |
| TTTATTCCACCAACGCTTTG+GGG | 0.616024 | 1.3:+52573607 | MS.gene95467:CDS |
| TAAAACTGACCCCAAAGCGT+TGG | 0.618013 | 1.3:-52573616 | None:intergenic |
| GTCTGCTTGATCAAACTGGA+AGG | 0.626822 | 1.3:+52574868 | MS.gene95467:CDS |
| AAGTGTGATGACATGGTGCG+TGG | 0.628658 | 1.3:-52573175 | None:intergenic |
| ACCACCAAAACGCGCCTCCG+TGG | 0.633706 | 1.3:+52573199 | MS.gene95467:CDS |
| GTACTGCTTTGTACATGGAA+GGG | 0.645077 | 1.3:-52573270 | None:intergenic |
| CCATGTCGAAAACGACGCCA+CGG | 0.669079 | 1.3:-52573216 | None:intergenic |
| AGTGTGATGACATGGTGCGT+GGG | 0.699733 | 1.3:-52573174 | None:intergenic |
| TGTCGAAAACGACGCCACGG+AGG | 0.727352 | 1.3:-52573213 | None:intergenic |
| TGGAAGGGAAATCAATGACG+GGG | 0.729656 | 1.3:-52573255 | None:intergenic |
| GAATTGAGTAAACTTCAGAG+AGG | 0.733429 | 1.3:-52574947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTACTTTTTTATTATATT+AGG | + | chr1.3:52573480-52573499 | MS.gene95467:intron | 10.0% |
| !! | ATATTACATACTTACAAATT+GGG | + | chr1.3:52573651-52573670 | MS.gene95467:intron | 15.0% |
| !! | ATTGAATATGAACAAATAAA+AGG | - | chr1.3:52574046-52574065 | None:intergenic | 15.0% |
| !! | TATATTACATACTTACAAAT+TGG | + | chr1.3:52573650-52573669 | MS.gene95467:intron | 15.0% |
| !!! | TTTTATTTGTTCATATTCAA+TGG | + | chr1.3:52574045-52574064 | MS.gene95467:intron | 15.0% |
| !! | AATATGAACAAATAAAAGGA+GGG | - | chr1.3:52574042-52574061 | None:intergenic | 20.0% |
| !! | GAACATTCAATCAAATTAAT+GGG | - | chr1.3:52574320-52574339 | None:intergenic | 20.0% |
| !! | TGAACATTCAATCAAATTAA+TGG | - | chr1.3:52574321-52574340 | None:intergenic | 20.0% |
| !! | TTCTTGATTCAAAGAAAATT+AGG | + | chr1.3:52573546-52573565 | MS.gene95467:CDS | 20.0% |
| !! | TTGAATGTTCATGATTTATA+TGG | + | chr1.3:52574330-52574349 | MS.gene95467:intron | 20.0% |
| !!! | CACATAATTAATCTATTTCT+TGG | - | chr1.3:52573707-52573726 | None:intergenic | 20.0% |
| !!! | GATTTTATTCTATCTTGTTA+TGG | - | chr1.3:52573766-52573785 | None:intergenic | 20.0% |
| !!! | TTGTTTGAATTGACTTATTT+AGG | - | chr1.3:52573937-52573956 | None:intergenic | 20.0% |
| ! | AATTCAAACAAACCCTTAAA+AGG | + | chr1.3:52573946-52573965 | MS.gene95467:intron | 25.0% |
| ! | AATTGAAACGGTTAAAGTTA+TGG | - | chr1.3:52574599-52574618 | None:intergenic | 25.0% |
| ! | AGAAACAATTGTAAAATCGA+AGG | + | chr1.3:52574395-52574414 | MS.gene95467:intron | 25.0% |
| ! | ATATGAACAAATAAAAGGAG+GGG | - | chr1.3:52574041-52574060 | None:intergenic | 25.0% |
| ! | ATTGAAACGGTTAAAGTTAT+GGG | - | chr1.3:52574598-52574617 | None:intergenic | 25.0% |
| ! | GAATATGAACAAATAAAAGG+AGG | - | chr1.3:52574043-52574062 | None:intergenic | 25.0% |
| ! | GCATAATAAATTGAACTAAC+AGG | + | chr1.3:52574001-52574020 | MS.gene95467:intron | 25.0% |
| ! | TAAGTGGCATAAAATTGAAA+CGG | - | chr1.3:52574611-52574630 | None:intergenic | 25.0% |
| ! | TAATTGATTAATTATGCTGC+AGG | + | chr1.3:52573503-52573522 | MS.gene95467:intron | 25.0% |
| ! | TACAAAAGAAGAAGAAAAGT+AGG | - | chr1.3:52573465-52573484 | None:intergenic | 25.0% |
| ! | TCTTCACAATCATAAATAAG+TGG | + | chr1.3:52574667-52574686 | MS.gene95467:intron | 25.0% |
| ! | TGAATCAACAAATATTTCGT+TGG | - | chr1.3:52574755-52574774 | None:intergenic | 25.0% |
| ! | TGATTCAAAGAAAATTAGGA+GGG | + | chr1.3:52573550-52573569 | MS.gene95467:CDS | 25.0% |
| ! | TTGATTCAAAGAAAATTAGG+AGG | + | chr1.3:52573549-52573568 | MS.gene95467:CDS | 25.0% |
| !! | TCTTGAGACAAATTTTGAAT+TGG | + | chr1.3:52574968-52574987 | MS.gene95467:CDS | 25.0% |
| !!! | AGATGTTCATAAGTTGTTTT+CGG | - | chr1.3:52573854-52573873 | None:intergenic | 25.0% |
| !!! | TTTGTTGATTCAGATGTATT+TGG | + | chr1.3:52574763-52574782 | MS.gene95467:intron | 25.0% |
| !!! | TTTTATGCCACTTATAATAC+CGG | + | chr1.3:52574617-52574636 | MS.gene95467:intron | 25.0% |
| AAAAGTAGGTATTTACTACC+AGG | - | chr1.3:52573451-52573470 | None:intergenic | 30.0% | |
| AAAATGAGCAATGGTATCAT+AGG | - | chr1.3:52573395-52573414 | None:intergenic | 30.0% | |
| AAATCGACATTAGCATATTC+GGG | - | chr1.3:52574903-52574922 | None:intergenic | 30.0% | |
| AACCACTTACATCATCTTTA+AGG | - | chr1.3:52574292-52574311 | None:intergenic | 30.0% | |
| AATTGAGTAAACTTCAGAGA+GGG | - | chr1.3:52574949-52574968 | None:intergenic | 30.0% | |
| ATACCAAAATGCATAGTGAA+AGG | - | chr1.3:52574572-52574591 | None:intergenic | 30.0% | |
| ATACTGTTTGAGAAAGCTTA+TGG | - | chr1.3:52573889-52573908 | None:intergenic | 30.0% | |
| ATTATGCCTCCAATAGAATT+GGG | - | chr1.3:52573988-52574007 | None:intergenic | 30.0% | |
| GAAATCGACATTAGCATATT+CGG | - | chr1.3:52574904-52574923 | None:intergenic | 30.0% | |
| GATTCAAAGAAAATTAGGAG+GGG | + | chr1.3:52573551-52573570 | MS.gene95467:CDS | 30.0% | |
| TACATACTTACAAATTGGGT+TGG | + | chr1.3:52573655-52573674 | MS.gene95467:intron | 30.0% | |
| TATTATGCCTCCAATAGAAT+TGG | - | chr1.3:52573989-52574008 | None:intergenic | 30.0% | |
| TCAACCAAATGAAGTAGTAA+TGG | + | chr1.3:52574256-52574275 | MS.gene95467:CDS | 30.0% | |
| TGGAAAATATGTGCATAGAA+TGG | - | chr1.3:52574735-52574754 | None:intergenic | 30.0% | |
| TTTACAAGCAATCACACTAT+GGG | - | chr1.3:52574531-52574550 | None:intergenic | 30.0% | |
| TTTCACAACAAAATCCAGAA+AGG | + | chr1.3:52574441-52574460 | MS.gene95467:intron | 30.0% | |
| ! | AAAAGCAGATGAACCTTTTA+AGG | - | chr1.3:52573962-52573981 | None:intergenic | 30.0% |
| ! | AAAGCAGATGAACCTTTTAA+GGG | - | chr1.3:52573961-52573980 | None:intergenic | 30.0% |
| ! | ATTGAACTAACAGGTTTTTC+TGG | + | chr1.3:52574010-52574029 | MS.gene95467:intron | 30.0% |
| ! | GATTCAGATGTATTTGGAAT+TGG | + | chr1.3:52574769-52574788 | MS.gene95467:intron | 30.0% |
| ! | GTCTACTAGTTAGAACTTTT+AGG | - | chr1.3:52574468-52574487 | None:intergenic | 30.0% |
| ! | TTTTACAAGCAATCACACTA+TGG | - | chr1.3:52574532-52574551 | None:intergenic | 30.0% |
| ! | TTTTTACCCAATTCTATTGG+AGG | + | chr1.3:52573979-52573998 | MS.gene95467:intron | 30.0% |
| !! | CATTGCTCATTTTGAAAAAC+AGG | + | chr1.3:52573402-52573421 | MS.gene95467:CDS | 30.0% |
| !! | CTGTTTTTCAAAATGAGCAA+TGG | - | chr1.3:52573404-52573423 | None:intergenic | 30.0% |
| !! | TTGATTTGCAATAAGGATGA+GGG | + | chr1.3:52574643-52574662 | MS.gene95467:intron | 30.0% |
| !! | TTTGATTTGCAATAAGGATG+AGG | + | chr1.3:52574642-52574661 | MS.gene95467:intron | 30.0% |
| !!! | GCTTTTTTACCCAATTCTAT+TGG | + | chr1.3:52573976-52573995 | MS.gene95467:intron | 30.0% |
| AAATGAAGTAGTAATGGTCG+GGG | + | chr1.3:52574262-52574281 | MS.gene95467:CDS | 35.0% | |
| ACTGCATATCTGTTCTCTTT+GGG | + | chr1.3:52574229-52574248 | MS.gene95467:CDS | 35.0% | |
| AGCCTTAAAGATGATGTAAG+TGG | + | chr1.3:52574287-52574306 | MS.gene95467:intron | 35.0% | |
| ATATTCAATGGCTCATCGTA+TGG | + | chr1.3:52574057-52574076 | MS.gene95467:intron | 35.0% | |
| ATTTACTACCAGGCATGATT+TGG | - | chr1.3:52573441-52573460 | None:intergenic | 35.0% | |
| ATTTATTCCACCAACGCTTT+GGG | + | chr1.3:52573606-52573625 | MS.gene95467:CDS | 35.0% | |
| CAAATGAAGTAGTAATGGTC+GGG | + | chr1.3:52574261-52574280 | MS.gene95467:CDS | 35.0% | |
| CCAAATGAAGTAGTAATGGT+CGG | + | chr1.3:52574260-52574279 | MS.gene95467:CDS | 35.0% | |
| CCTTATTGCAAATCAAATGC+CGG | - | chr1.3:52574639-52574658 | None:intergenic | 35.0% | |
| CGATTTCAAACCAGATTTCA+AGG | + | chr1.3:52574917-52574936 | MS.gene95467:CDS | 35.0% | |
| GAAAGATATTGCTTCAAGCT+GGG | - | chr1.3:52574713-52574732 | None:intergenic | 35.0% | |
| GAATTGAGTAAACTTCAGAG+AGG | - | chr1.3:52574950-52574969 | None:intergenic | 35.0% | |
| GATTGTTCATTTGTACCCAA+AGG | - | chr1.3:52574372-52574391 | None:intergenic | 35.0% | |
| TACTGCATATCTGTTCTCTT+TGG | + | chr1.3:52574228-52574247 | MS.gene95467:CDS | 35.0% | |
| TCAAATGCCGGTATTATAAG+TGG | - | chr1.3:52574627-52574646 | None:intergenic | 35.0% | |
| TCAAGATATCAATTCCAGCA+GGG | - | chr1.3:52573333-52573352 | None:intergenic | 35.0% | |
| TCTTGAAACTCATTGATCAC+TGG | + | chr1.3:52573347-52573366 | MS.gene95467:CDS | 35.0% | |
| TGTAAAAGAACCCTATGACT+CGG | + | chr1.3:52574545-52574564 | MS.gene95467:intron | 35.0% | |
| TTCAAGATATCAATTCCAGC+AGG | - | chr1.3:52573334-52573353 | None:intergenic | 35.0% | |
| ! | AAGCTATCTTAGAGAGCTTT+TGG | + | chr1.3:52573821-52573840 | MS.gene95467:intron | 35.0% |
| ! | ATTTTCTCCAGCATTAAGCA+GGG | + | chr1.3:52574172-52574191 | MS.gene95467:CDS | 35.0% |
| ! | CAGATGTATTTGGAATTGGA+TGG | + | chr1.3:52574773-52574792 | MS.gene95467:intron | 35.0% |
| ! | GAAGATAAGGAAAGCTTTTG+CGG | - | chr1.3:52573155-52573174 | None:intergenic | 35.0% |
| !! | TAGAACTTTTAGGTCCTTTC+TGG | - | chr1.3:52574458-52574477 | None:intergenic | 35.0% |
| AAATGTAATCTGCAGCAACG+AGG | - | chr1.3:52574156-52574175 | None:intergenic | 40.0% | |
| AAGCCATAATTGTCCACCTT+TGG | + | chr1.3:52574353-52574372 | MS.gene95467:intron | 40.0% | |
| ACTTGTCTGCTTGATCAAAC+TGG | + | chr1.3:52574864-52574883 | MS.gene95467:CDS | 40.0% | |
| AGAGAACAGATATGCAGTAG+TGG | - | chr1.3:52574227-52574246 | None:intergenic | 40.0% | |
| AGCCATAATTGTCCACCTTT+GGG | + | chr1.3:52574354-52574373 | MS.gene95467:intron | 40.0% | |
| AGGGAAGTTACCTTGAAATC+TGG | - | chr1.3:52574930-52574949 | None:intergenic | 40.0% | |
| AGTACTGCTTTGTACATGGA+AGG | - | chr1.3:52573274-52573293 | None:intergenic | 40.0% | |
| ATAAATAAGTGGCCTGCACA+GGG | + | chr1.3:52574678-52574697 | MS.gene95467:intron | 40.0% | |
| ATGGAAGGGAAATCAATGAC+GGG | - | chr1.3:52573259-52573278 | None:intergenic | 40.0% | |
| CATGGAAGGGAAATCAATGA+CGG | - | chr1.3:52573260-52573279 | None:intergenic | 40.0% | |
| CCGACCATTACTACTTCATT+TGG | - | chr1.3:52574263-52574282 | None:intergenic | 40.0% | |
| GATTTATTCCACCAACGCTT+TGG | + | chr1.3:52573605-52573624 | MS.gene95467:CDS | 40.0% | |
| GGAAAGATATTGCTTCAAGC+TGG | - | chr1.3:52574714-52574733 | None:intergenic | 40.0% | |
| GTACTGCTTTGTACATGGAA+GGG | - | chr1.3:52573273-52573292 | None:intergenic | 40.0% | |
| TACCCAAAGGTGGACAATTA+TGG | - | chr1.3:52574359-52574378 | None:intergenic | 40.0% | |
| TCCACAAGCAATCTGCAAAA+TGG | - | chr1.3:52574826-52574845 | None:intergenic | 40.0% | |
| TCCATGTACAAAGCAGTACT+CGG | + | chr1.3:52573274-52573293 | MS.gene95467:CDS | 40.0% | |
| TGTTCATTTGTACCCAAAGG+TGG | - | chr1.3:52574369-52574388 | None:intergenic | 40.0% | |
| TTAGGAGGGGTTTGATTACA+AGG | + | chr1.3:52573564-52573583 | MS.gene95467:CDS | 40.0% | |
| TTTATTCCACCAACGCTTTG+GGG | + | chr1.3:52573607-52573626 | MS.gene95467:CDS | 40.0% | |
| ! | ACCATTTTGCAGATTGCTTG+TGG | + | chr1.3:52574822-52574841 | MS.gene95467:intron | 40.0% |
| ! | ATTTTGCAGATTGCTTGTGG+AGG | + | chr1.3:52574825-52574844 | MS.gene95467:intron | 40.0% |
| ! | CATTTTCTCCAGCATTAAGC+AGG | + | chr1.3:52574171-52574190 | MS.gene95467:CDS | 40.0% |
| ! | GGTCCTTTCACTATGCATTT+TGG | + | chr1.3:52574566-52574585 | MS.gene95467:intron | 40.0% |
| ! | TTTTGCAGATTGCTTGTGGA+GGG | + | chr1.3:52574826-52574845 | MS.gene95467:intron | 40.0% |
| !! | CCGGCATTTGATTTGCAATA+AGG | + | chr1.3:52574636-52574655 | MS.gene95467:intron | 40.0% |
| AATGGCTCATCGTATGGTGA+AGG | + | chr1.3:52574063-52574082 | MS.gene95467:intron | 45.0% | |
| AGTGAAAGGACCGAGTCATA+GGG | - | chr1.3:52574558-52574577 | None:intergenic | 45.0% | |
| ATCAATTCCAGCAGGGTTTG+AGG | - | chr1.3:52573326-52573345 | None:intergenic | 45.0% | |
| CATAAATAAGTGGCCTGCAC+AGG | + | chr1.3:52574677-52574696 | MS.gene95467:intron | 45.0% | |
| CGAAATTCCCTGCTTAATGC+TGG | - | chr1.3:52574182-52574201 | None:intergenic | 45.0% | |
| GAGCAATGGTATCATAGGCT+TGG | - | chr1.3:52573390-52573409 | None:intergenic | 45.0% | |
| GGAGCTGGATCAGGTTTATA+AGG | - | chr1.3:52574206-52574225 | None:intergenic | 45.0% | |
| GGTGGTTAAGTGTGATGACA+TGG | - | chr1.3:52573185-52573204 | None:intergenic | 45.0% | |
| GTCTGCTTGATCAAACTGGA+AGG | + | chr1.3:52574868-52574887 | MS.gene95467:CDS | 45.0% | |
| TAAAACTGACCCCAAAGCGT+TGG | - | chr1.3:52573619-52573638 | None:intergenic | 45.0% | |
| TAGTGAAAGGACCGAGTCAT+AGG | - | chr1.3:52574559-52574578 | None:intergenic | 45.0% | |
| TGGAAGGGAAATCAATGACG+GGG | - | chr1.3:52573258-52573277 | None:intergenic | 45.0% | |
| ! | TACTACCAGGCATGATTTGG+AGG | - | chr1.3:52573438-52573457 | None:intergenic | 45.0% |
| AAGTGTGATGACATGGTGCG+TGG | - | chr1.3:52573178-52573197 | None:intergenic | 50.0% | |
| ACATGGTGCGTGGGAAGATA+AGG | - | chr1.3:52573168-52573187 | None:intergenic | 50.0% | |
| AGTGTGATGACATGGTGCGT+GGG | - | chr1.3:52573177-52573196 | None:intergenic | 50.0% | |
| GATCACCTCCAAATCATGCC+TGG | + | chr1.3:52573430-52573449 | MS.gene95467:CDS | 50.0% | |
| TAGGCTTGGCGTTGTTGATG+TGG | - | chr1.3:52573376-52573395 | None:intergenic | 50.0% | |
| ! | AGGGAAATCAATGACGGGGA+CGG | - | chr1.3:52573254-52573273 | None:intergenic | 50.0% |
| ! | CAGATATGCAGTAGTGGAGC+TGG | - | chr1.3:52574221-52574240 | None:intergenic | 50.0% |
| ! | GCCGAGTACTGCTTTGTACA+TGG | - | chr1.3:52573278-52573297 | None:intergenic | 50.0% |
| ! | GCTTTTGCGGAAGAGAGCAA+TGG | - | chr1.3:52573142-52573161 | None:intergenic | 50.0% |
| CCATGTCGAAAACGACGCCA+CGG | - | chr1.3:52573219-52573238 | None:intergenic | 55.0% | |
| GGGTTGAAGTTACCCTGTGC+AGG | - | chr1.3:52574693-52574712 | None:intergenic | 55.0% | |
| GTCAAAGCCTCAAACCCTGC+TGG | + | chr1.3:52573316-52573335 | MS.gene95467:CDS | 55.0% | |
| ! | TGCAGTAGTGGAGCTGGATC+AGG | - | chr1.3:52574215-52574234 | None:intergenic | 55.0% |
| !! | AACTGACCCCAAAGCGTTGG+TGG | - | chr1.3:52573616-52573635 | None:intergenic | 55.0% |
| !! | GGCGTCGTTTTCGACATGGA+CGG | + | chr1.3:52573220-52573239 | MS.gene95467:CDS | 55.0% |
| ATTGCTTGTGGAGGGCGAGC+AGG | + | chr1.3:52574834-52574853 | MS.gene95467:CDS | 60.0% | |
| TGTCGAAAACGACGCCACGG+AGG | - | chr1.3:52573216-52573235 | None:intergenic | 60.0% | |
| !! | CCGTGGCGTCGTTTTCGACA+TGG | + | chr1.3:52573216-52573235 | MS.gene95467:CDS | 60.0% |
| ACCACCAAAACGCGCCTCCG+TGG | + | chr1.3:52573199-52573218 | MS.gene95467:CDS | 65.0% | |
| !! | GACGCCACGGAGGCGCGTTT+TGG | - | chr1.3:52573206-52573225 | None:intergenic | 70.0% |
| !! | GCCACGGAGGCGCGTTTTGG+TGG | - | chr1.3:52573203-52573222 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52573136 | 52574998 | 52573136 | ID=MS.gene95467 |
| chr1.3 | mRNA | 52573136 | 52574998 | 52573136 | ID=MS.gene95467.t1;Parent=MS.gene95467 |
| chr1.3 | exon | 52573136 | 52573451 | 52573136 | ID=MS.gene95467.t1.exon1;Parent=MS.gene95467.t1 |
| chr1.3 | CDS | 52573136 | 52573451 | 52573136 | ID=cds.MS.gene95467.t1;Parent=MS.gene95467.t1 |
| chr1.3 | exon | 52573525 | 52573628 | 52573525 | ID=MS.gene95467.t1.exon2;Parent=MS.gene95467.t1 |
| chr1.3 | CDS | 52573525 | 52573628 | 52573525 | ID=cds.MS.gene95467.t1;Parent=MS.gene95467.t1 |
| chr1.3 | exon | 52574167 | 52574301 | 52574167 | ID=MS.gene95467.t1.exon3;Parent=MS.gene95467.t1 |
| chr1.3 | CDS | 52574167 | 52574301 | 52574167 | ID=cds.MS.gene95467.t1;Parent=MS.gene95467.t1 |
| chr1.3 | exon | 52574834 | 52574998 | 52574834 | ID=MS.gene95467.t1.exon4;Parent=MS.gene95467.t1 |
| chr1.3 | CDS | 52574834 | 52574998 | 52574834 | ID=cds.MS.gene95467.t1;Parent=MS.gene95467.t1 |
| Gene Sequence |
| Protein sequence |
