Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96826.t1 | XP_003607683.1 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 1.20E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96826.t1 | Q5ZI57 | 59.4 | 165 | 67 | 0 | 17 | 181 | 12 | 176 | 3.4e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96826.t1 | B7FMN3 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 8.4e-100 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96826 | MS.gene015741 | PPI |
| MS.gene96826 | MS.gene79721 | PPI |
| MS.gene96826 | MS.gene21951 | PPI |
| MS.gene96826 | MS.gene59609 | PPI |
| MS.gene96826 | MS.gene05927 | PPI |
| MS.gene96826 | MS.gene049131 | PPI |
| MS.gene92142 | MS.gene96826 | PPI |
| MS.gene96826 | MS.gene98171 | PPI |
| MS.gene96826 | MS.gene024701 | PPI |
| MS.gene96826 | MS.gene22289 | PPI |
| MS.gene96826 | MS.gene04771 | PPI |
| MS.gene96826 | MS.gene21679 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96826.t1 | MTR_4g081170 | 99.462 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 2.64e-136 | 378 |
| MS.gene96826.t1 | MTR_8g027700 | 93.548 | 186 | 12 | 0 | 1 | 186 | 1 | 186 | 9.95e-130 | 362 |
| MS.gene96826.t1 | MTR_8g027700 | 92.593 | 135 | 10 | 0 | 52 | 186 | 1 | 135 | 1.60e-91 | 263 |
| MS.gene96826.t1 | MTR_4g027400 | 82.979 | 47 | 8 | 0 | 1 | 47 | 1 | 47 | 8.62e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96826.t1 | AT5G54750 | 87.634 | 186 | 23 | 0 | 1 | 186 | 1 | 186 | 8.37e-122 | 342 |
| MS.gene96826.t1 | AT5G54750 | 81.910 | 199 | 23 | 1 | 1 | 186 | 1 | 199 | 6.78e-118 | 332 |
Find 32 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTACTTGTAGTATTATTT+TGG | 0.173251 | 4.3:-28884723 | MS.gene96826:CDS |
| TCCTTATATGGATACTCTTC+TGG | 0.287013 | 4.3:+28883992 | None:intergenic |
| TATTACTCATCATCCTTATA+TGG | 0.314204 | 4.3:+28883980 | None:intergenic |
| ATAGAAGCTTACCATATCTA+AGG | 0.368967 | 4.3:+28884610 | None:intergenic |
| TCCAGAAGAGTATCCATATA+AGG | 0.373933 | 4.3:-28883993 | MS.gene96826:CDS |
| TTACCGCATCCGTGACCAAT+TGG | 0.424789 | 4.3:-28884757 | MS.gene96826:CDS |
| TCGCCGGTTCGAGGAGCAAC+AGG | 0.444238 | 4.3:+28886824 | None:intergenic |
| TATAGACCTTGATAGTTGTC+AGG | 0.479131 | 4.3:+28884668 | None:intergenic |
| CAATGAAGGCTGAGGTCACT+TGG | 0.479280 | 4.3:-28884078 | MS.gene96826:CDS |
| ATATTAAGCGGAGTCATTAG+AGG | 0.486373 | 4.3:-28884635 | MS.gene96826:CDS |
| GCTCCTGTTGCTCCTCGAAC+CGG | 0.487837 | 4.3:-28886827 | MS.gene96826:CDS |
| CATTAGAGGAGCCTTAGATA+TGG | 0.489659 | 4.3:-28884621 | MS.gene96826:intron |
| ATCCCAATTGGTCACGGATG+CGG | 0.496672 | 4.3:+28884754 | None:intergenic |
| TACCGCATCCGTGACCAATT+GGG | 0.499246 | 4.3:-28884756 | MS.gene96826:CDS |
| TGGCTAAATCTAATGTCTCA+AGG | 0.508999 | 4.3:-28886549 | MS.gene96826:CDS |
| AGTCCCTTCAGCATCCCAAT+TGG | 0.532365 | 4.3:+28884742 | None:intergenic |
| GAGCTCTTTACTCTCACATA+TGG | 0.537014 | 4.3:-28886767 | MS.gene96826:CDS |
| GAGCTTCCTGACAACTATCA+AGG | 0.547242 | 4.3:-28884674 | MS.gene96826:CDS |
| TGGCTACGAGATGTGCTTCG+AGG | 0.557803 | 4.3:-28884058 | MS.gene96826:CDS |
| TCATACTCAGGTATCAATGA+AGG | 0.563147 | 4.3:-28884092 | MS.gene96826:intron |
| TACTACTGCAACATATTAAG+CGG | 0.569518 | 4.3:-28884647 | MS.gene96826:CDS |
| GTGACCAATTGGGATGCTGA+AGG | 0.590525 | 4.3:-28884746 | MS.gene96826:CDS |
| TTCAGCATCCCAATTGGTCA+CGG | 0.591444 | 4.3:+28884748 | None:intergenic |
| GACTGCTGATGTCATTGCAA+AGG | 0.591701 | 4.3:-28886509 | MS.gene96826:intron |
| TGACCAATTGGGATGCTGAA+GGG | 0.593955 | 4.3:-28884745 | MS.gene96826:CDS |
| AGCTCAACAAAGTCTACCAA+AGG | 0.594508 | 4.3:+28884692 | None:intergenic |
| GTTAGCAAATATCGCATCGC+CGG | 0.596718 | 4.3:+28886808 | None:intergenic |
| TAACATCGAACGCGTTAATG+CGG | 0.607582 | 4.3:-28886789 | MS.gene96826:CDS |
| TCAGGTATCAATGAAGGCTG+AGG | 0.608851 | 4.3:-28884086 | MS.gene96826:intron |
| AATATCGCATCGCCGGTTCG+AGG | 0.625890 | 4.3:+28886815 | None:intergenic |
| ATTGCTTACAGATCTCGAAG+AGG | 0.675299 | 4.3:-28886729 | MS.gene96826:CDS |
| TCACGGATGCGGTAACACCG+AGG | 0.770702 | 4.3:+28884765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTCAGTATCTAATAAT+TGG | - | chr4.3:28885830-28885849 | MS.gene96826:intron | 15.0% |
| !! | TTTATAATATTATATCGTCT+TGG | - | chr4.3:28885714-28885733 | MS.gene96826:intron | 15.0% |
| !! | AATTAACACATACGAATTTA+GGG | + | chr4.3:28885758-28885777 | None:intergenic | 20.0% |
| !! | ATGATAAAAAGCTATCATTA+TGG | - | chr4.3:28885511-28885530 | MS.gene96826:intron | 20.0% |
| !! | TAAGAGGAAAATAATGAAAA+TGG | + | chr4.3:28885283-28885302 | None:intergenic | 20.0% |
| !! | TAATTAACACATACGAATTT+AGG | + | chr4.3:28885759-28885778 | None:intergenic | 20.0% |
| !! | TATATCTTTATTAGAAGACT+CGG | + | chr4.3:28884566-28884585 | None:intergenic | 20.0% |
| !! | TGAAAATCCATAATGTAATT+GGG | - | chr4.3:28886543-28886562 | MS.gene96826:CDS | 20.0% |
| !! | TTGAAAATCCATAATGTAAT+TGG | - | chr4.3:28886542-28886561 | MS.gene96826:CDS | 20.0% |
| !!! | AAACCAGAATAATTTAGTTT+CGG | + | chr4.3:28885450-28885469 | None:intergenic | 20.0% |
| ! | AATGAAAATGGCAATATATG+TGG | + | chr4.3:28885271-28885290 | None:intergenic | 25.0% |
| ! | ATATCTTTATTAGAAGACTC+GGG | + | chr4.3:28884565-28884584 | None:intergenic | 25.0% |
| ! | ATGATGTATGTATACATAAG+AGG | - | chr4.3:28884432-28884451 | MS.gene96826:intron | 25.0% |
| ! | CGTAAAAAAACAAAAAATGC+TGG | + | chr4.3:28885928-28885947 | None:intergenic | 25.0% |
| ! | CTCAATTTCTGTTTGTATTT+CGG | - | chr4.3:28884152-28884171 | MS.gene96826:intron | 25.0% |
| ! | CTTTCATTAAGAATGATGTT+TGG | - | chr4.3:28885626-28885645 | MS.gene96826:intron | 25.0% |
| ! | TCAAACATATATAAAGCAGA+AGG | - | chr4.3:28885967-28885986 | MS.gene96826:intron | 25.0% |
| ! | TCTTTAAATCAAGACATAGA+AGG | - | chr4.3:28884801-28884820 | MS.gene96826:intron | 25.0% |
| ! | TGATTAAAAAACTGGTGAAT+GGG | + | chr4.3:28886265-28886284 | None:intergenic | 25.0% |
| ! | TGCTTTCAGAAAATAAAGAA+CGG | + | chr4.3:28886473-28886492 | None:intergenic | 25.0% |
| ! | TTGGTATGATATTTACAAGA+CGG | - | chr4.3:28885874-28885893 | MS.gene96826:intron | 25.0% |
| !! | AACCAGAATAATTTAGTTTC+GGG | + | chr4.3:28885449-28885468 | None:intergenic | 25.0% |
| !! | AGATTACTCATGATTTTGTA+TGG | - | chr4.3:28886373-28886392 | MS.gene96826:intron | 25.0% |
| !! | GACTACTTGTAGTATTATTT+TGG | - | chr4.3:28886089-28886108 | MS.gene96826:intron | 25.0% |
| !! | TTGTTTTCCCAATTACATTA+TGG | + | chr4.3:28886553-28886572 | None:intergenic | 25.0% |
| !!! | ATATCTAAGTCGCATTTTTT+TGG | + | chr4.3:28885570-28885589 | None:intergenic | 25.0% |
| !!! | ATCATAGTTATTTTTCCTAG+AGG | - | chr4.3:28886585-28886604 | MS.gene96826:CDS | 25.0% |
| !!! | ATTTTCAGGGGTTATAATAT+TGG | - | chr4.3:28884217-28884236 | MS.gene96826:intron | 25.0% |
| !!! | TACTTGTAGTATTATTTTGG+AGG | - | chr4.3:28886092-28886111 | MS.gene96826:intron | 25.0% |
| AATTGTTCGTTTATACAGGT+TGG | - | chr4.3:28886012-28886031 | MS.gene96826:intron | 30.0% | |
| ACATCTTTCATTGCTAAGAA+AGG | + | chr4.3:28886511-28886530 | None:intergenic | 30.0% | |
| AGAAGAGCTGATTAAAAAAC+TGG | + | chr4.3:28886273-28886292 | None:intergenic | 30.0% | |
| AGATGAACAAGTATGTTTGT+AGG | - | chr4.3:28885165-28885184 | MS.gene96826:intron | 30.0% | |
| AGATTAGTAGAATCAATGGA+TGG | - | chr4.3:28884766-28884785 | MS.gene96826:CDS | 30.0% | |
| ATAGAAGCTTACCATATCTA+AGG | + | chr4.3:28886205-28886224 | None:intergenic | 30.0% | |
| ATCTTTCATTGCTAAGAAAG+GGG | + | chr4.3:28886509-28886528 | None:intergenic | 30.0% | |
| ATGTTTACTGAGCATTATGT+TGG | + | chr4.3:28885477-28885496 | None:intergenic | 30.0% | |
| ATTAGACTAAGATGCAATAG+AGG | - | chr4.3:28885237-28885256 | MS.gene96826:intron | 30.0% | |
| ATTCTTCTACATTCATACTC+AGG | - | chr4.3:28886708-28886727 | MS.gene96826:CDS | 30.0% | |
| CAAAAGCTTAGTAAGTTAGT+TGG | - | chr4.3:28884397-28884416 | MS.gene96826:intron | 30.0% | |
| CATACTTGTTCATCTGAATT+TGG | + | chr4.3:28885160-28885179 | None:intergenic | 30.0% | |
| CATCTTTCATTGCTAAGAAA+GGG | + | chr4.3:28886510-28886529 | None:intergenic | 30.0% | |
| CCAAAAACTCATCAATCAAA+CGG | + | chr4.3:28884246-28884265 | None:intergenic | 30.0% | |
| CCTGTATAAACGAACAATTA+AGG | + | chr4.3:28886011-28886030 | None:intergenic | 30.0% | |
| CCTTAATTGTTCGTTTATAC+AGG | - | chr4.3:28886008-28886027 | MS.gene96826:intron | 30.0% | |
| CTGATTAAAAAACTGGTGAA+TGG | + | chr4.3:28886266-28886285 | None:intergenic | 30.0% | |
| CTGCAATCTATCTGTAATAT+GGG | - | chr4.3:28884695-28884714 | MS.gene96826:CDS | 30.0% | |
| GTATGTATACATAAGAGGAA+GGG | - | chr4.3:28884437-28884456 | MS.gene96826:intron | 30.0% | |
| TACTACTGCAACATATTAAG+CGG | - | chr4.3:28886165-28886184 | MS.gene96826:intron | 30.0% | |
| TATCTTTATTAGAAGACTCG+GGG | + | chr4.3:28884564-28884583 | None:intergenic | 30.0% | |
| TCTGCAATCTATCTGTAATA+TGG | - | chr4.3:28884694-28884713 | MS.gene96826:CDS | 30.0% | |
| TGAAAAGTGAAGACATACTT+TGG | + | chr4.3:28885685-28885704 | None:intergenic | 30.0% | |
| TGCTTTGCATTCATTCAAAT+CGG | - | chr4.3:28885315-28885334 | MS.gene96826:intron | 30.0% | |
| TGGTAGATTAGTAGAATCAA+TGG | - | chr4.3:28884762-28884781 | MS.gene96826:CDS | 30.0% | |
| TGTATGTATACATAAGAGGA+AGG | - | chr4.3:28884436-28884455 | MS.gene96826:intron | 30.0% | |
| TGTTTACTGAGCATTATGTT+GGG | + | chr4.3:28885476-28885495 | None:intergenic | 30.0% | |
| TTAGACTAAGATGCAATAGA+GGG | - | chr4.3:28885238-28885257 | MS.gene96826:intron | 30.0% | |
| TTATCAATTGAGAGAGTGAA+GGG | - | chr4.3:28884637-28884656 | MS.gene96826:CDS | 30.0% | |
| TTCCCGAAACTAAATTATTC+TGG | - | chr4.3:28885444-28885463 | MS.gene96826:intron | 30.0% | |
| TTGTATGGTTTATCGTTGTT+TGG | - | chr4.3:28886388-28886407 | MS.gene96826:intron | 30.0% | |
| ! | AATTTTCCTAATGACAGGAT+CGG | + | chr4.3:28884538-28884557 | None:intergenic | 30.0% |
| ! | TACTAAGCTTTTGTTCACAA+TGG | + | chr4.3:28884390-28884409 | None:intergenic | 30.0% |
| !! | TATTTTGGAGGATAATCCTT+TGG | - | chr4.3:28886104-28886123 | MS.gene96826:intron | 30.0% |
| !!! | GTTGGTTTTAAAATGTTCCT+CGG | - | chr4.3:28886030-28886049 | MS.gene96826:intron | 30.0% |
| AAAATGGCAATATATGTGGC+AGG | + | chr4.3:28885267-28885286 | None:intergenic | 35.0% | |
| AACAATGATGAAATGCAGTC+TGG | - | chr4.3:28885378-28885397 | MS.gene96826:intron | 35.0% | |
| ACACTCAAATTTCAGAAGAC+TGG | + | chr4.3:28886336-28886355 | None:intergenic | 35.0% | |
| ACTTTAGACAATGGGAATCA+TGG | - | chr4.3:28884927-28884946 | MS.gene96826:intron | 35.0% | |
| AGCAACTACAAACTCATAAG+AGG | + | chr4.3:28885299-28885318 | None:intergenic | 35.0% | |
| ATATTAAGCGGAGTCATTAG+AGG | - | chr4.3:28886177-28886196 | MS.gene96826:intron | 35.0% | |
| ATCAATGGCGATGATGATAA+TGG | - | chr4.3:28884738-28884757 | MS.gene96826:CDS | 35.0% | |
| CCGAACAGTAAAATTCAGAT+CGG | + | chr4.3:28884192-28884211 | None:intergenic | 35.0% | |
| CTTATCAATTGAGAGAGTGA+AGG | - | chr4.3:28884636-28884655 | MS.gene96826:CDS | 35.0% | |
| CTTTAGACAATGGGAATCAT+GGG | - | chr4.3:28884928-28884947 | MS.gene96826:intron | 35.0% | |
| GAAGAAGGACTTTAGACAAT+GGG | - | chr4.3:28884919-28884938 | MS.gene96826:intron | 35.0% | |
| GCTTAGTAAGTTAGTTGGTT+AGG | - | chr4.3:28884402-28884421 | MS.gene96826:intron | 35.0% | |
| GGTTTATCGTTGTTTGGAAA+GGG | - | chr4.3:28886394-28886413 | MS.gene96826:intron | 35.0% | |
| GTAAGTTAGTTGGTTAGGTT+AGG | - | chr4.3:28884407-28884426 | MS.gene96826:intron | 35.0% | |
| TAGACTAAGATGCAATAGAG+GGG | - | chr4.3:28885239-28885258 | MS.gene96826:intron | 35.0% | |
| TCATACTCAGGTATCAATGA+AGG | - | chr4.3:28886720-28886739 | MS.gene96826:CDS | 35.0% | |
| TCCTTATATGGATACTCTTC+TGG | + | chr4.3:28886823-28886842 | None:intergenic | 35.0% | |
| TGAAGAAGGACTTTAGACAA+TGG | - | chr4.3:28884918-28884937 | MS.gene96826:intron | 35.0% | |
| TGACACTATAAATTGGCACA+AGG | + | chr4.3:28884477-28884496 | None:intergenic | 35.0% | |
| TGATATTCACCTTCAGAACA+TGG | - | chr4.3:28884986-28885005 | MS.gene96826:intron | 35.0% | |
| TGGCTAAATCTAATGTCTCA+AGG | - | chr4.3:28884263-28884282 | MS.gene96826:intron | 35.0% | |
| TGGTTTATCGTTGTTTGGAA+AGG | - | chr4.3:28886393-28886412 | MS.gene96826:intron | 35.0% | |
| TGTGCCAATTTATAGTGTCA+TGG | - | chr4.3:28884477-28884496 | MS.gene96826:intron | 35.0% | |
| TTCTCATCGAAATGAGTGAT+AGG | - | chr4.3:28884588-28884607 | MS.gene96826:intron | 35.0% | |
| ! | CCGATCTGAATTTTACTGTT+CGG | - | chr4.3:28884189-28884208 | MS.gene96826:intron | 35.0% |
| ! | CCGTTTGATTGATGAGTTTT+TGG | - | chr4.3:28884243-28884262 | MS.gene96826:intron | 35.0% |
| ! | GGAAGAATTTTCCTAATGAC+AGG | + | chr4.3:28884543-28884562 | None:intergenic | 35.0% |
| ! | GGGAAATTTTCCTTAGATCT+AGG | - | chr4.3:28884715-28884734 | MS.gene96826:CDS | 35.0% |
| ! | TATAGACCTTGATAGTTGTC+AGG | + | chr4.3:28886147-28886166 | None:intergenic | 35.0% |
| ! | TTCCTTAGATCTAGGATCAA+TGG | - | chr4.3:28884723-28884742 | MS.gene96826:CDS | 35.0% |
| !! | ACTGTTCGGTTTGTATTTTC+AGG | - | chr4.3:28884203-28884222 | MS.gene96826:intron | 35.0% |
| !! | CTGTTCGGTTTGTATTTTCA+GGG | - | chr4.3:28884204-28884223 | MS.gene96826:intron | 35.0% |
| !! | CTTTTGTTTCACGTTGTAGT+TGG | - | chr4.3:28885790-28885809 | MS.gene96826:intron | 35.0% |
| !! | TCCAGAAGAGTATCCATATA+AGG | - | chr4.3:28886819-28886838 | MS.gene96826:CDS | 35.0% |
| !! | TGTTCGGTTTGTATTTTCAG+GGG | - | chr4.3:28884205-28884224 | MS.gene96826:intron | 35.0% |
| !!! | CTAAGTCGCATTTTTTTGGA+CGG | + | chr4.3:28885566-28885585 | None:intergenic | 35.0% |
| AAAACCAAGTAGCAGCACAT+AGG | + | chr4.3:28885901-28885920 | None:intergenic | 40.0% | |
| AAGTTGAAAACAAACCGACC+AGG | + | chr4.3:28884956-28884975 | None:intergenic | 40.0% | |
| AATGAGTGATAGGTTGCCTT+TGG | - | chr4.3:28884598-28884617 | MS.gene96826:intron | 40.0% | |
| ACATAAGAGGAAGGGATTAG+AGG | - | chr4.3:28884445-28884464 | MS.gene96826:intron | 40.0% | |
| ACATGACATGCAATGTGGAT+CGG | - | chr4.3:28886616-28886635 | MS.gene96826:intron | 40.0% | |
| AGCTCAACAAAGTCTACCAA+AGG | + | chr4.3:28886123-28886142 | None:intergenic | 40.0% | |
| ATGAGTGATAGGTTGCCTTT+GGG | - | chr4.3:28884599-28884618 | MS.gene96826:intron | 40.0% | |
| ATGTGACATGACATGCAATG+TGG | - | chr4.3:28886611-28886630 | MS.gene96826:intron | 40.0% | |
| ATTGCTTACAGATCTCGAAG+AGG | - | chr4.3:28884083-28884102 | MS.gene96826:CDS | 40.0% | |
| CAGAACATGGTGAATGTTCA+AGG | - | chr4.3:28884999-28885018 | MS.gene96826:intron | 40.0% | |
| CATAAGAGGAAGGGATTAGA+GGG | - | chr4.3:28884446-28884465 | MS.gene96826:intron | 40.0% | |
| CATTAGAGGAGCCTTAGATA+TGG | - | chr4.3:28886191-28886210 | MS.gene96826:intron | 40.0% | |
| CCTAGCCTAACAAACTATCA+GGG | + | chr4.3:28885027-28885046 | None:intergenic | 40.0% | |
| CCTTCTCTATTGAGAGAGTT+GGG | - | chr4.3:28885089-28885108 | MS.gene96826:intron | 40.0% | |
| GAACATTCACCATGTTCTGA+AGG | + | chr4.3:28884998-28885017 | None:intergenic | 40.0% | |
| GAAGACATACTTTGGACTTG+TGG | + | chr4.3:28885677-28885696 | None:intergenic | 40.0% | |
| GACTGTGAACACATTCTGAT+TGG | - | chr4.3:28885855-28885874 | MS.gene96826:intron | 40.0% | |
| GACTTGTGGCAAGATTAGAA+AGG | + | chr4.3:28885663-28885682 | None:intergenic | 40.0% | |
| GAGCTCTTTACTCTCACATA+TGG | - | chr4.3:28884045-28884064 | MS.gene96826:CDS | 40.0% | |
| GAGGCCATGACACTATAAAT+TGG | + | chr4.3:28884484-28884503 | None:intergenic | 40.0% | |
| TAACATCGAACGCGTTAATG+CGG | - | chr4.3:28884023-28884042 | MS.gene96826:CDS | 40.0% | |
| TCAAGACATAGAAGGAGATG+AGG | - | chr4.3:28884809-28884828 | MS.gene96826:intron | 40.0% | |
| TCCTTCTCTATTGAGAGAGT+TGG | - | chr4.3:28885088-28885107 | MS.gene96826:intron | 40.0% | |
| TCGGCAAAATGTGTTTGACT+TGG | - | chr4.3:28885334-28885353 | MS.gene96826:intron | 40.0% | |
| TGTGATGTGTATCAGTGAGA+GGG | - | chr4.3:28885048-28885067 | MS.gene96826:intron | 40.0% | |
| TTTCATTGCTAAGAAAGGGG+AGG | + | chr4.3:28886506-28886525 | None:intergenic | 40.0% | |
| ! | CGGCAAAATGTGTTTGACTT+GGG | - | chr4.3:28885335-28885354 | MS.gene96826:intron | 40.0% |
| ! | GTCATGTCACATTTTCCTCT+AGG | + | chr4.3:28886603-28886622 | None:intergenic | 40.0% |
| !! | AGGTACCCTGATAGTTTGTT+AGG | - | chr4.3:28885019-28885038 | MS.gene96826:intron | 40.0% |
| !! | ATGGCGATGATGATAATGGA+TGG | - | chr4.3:28884742-28884761 | MS.gene96826:CDS | 40.0% |
| !! | CAAAATGTGTTTGACTTGGG+GGG | - | chr4.3:28885338-28885357 | MS.gene96826:intron | 40.0% |
| !! | GCAAAATGTGTTTGACTTGG+GGG | - | chr4.3:28885337-28885356 | MS.gene96826:intron | 40.0% |
| !! | GGCAAAATGTGTTTGACTTG+GGG | - | chr4.3:28885336-28885355 | MS.gene96826:intron | 40.0% |
| AGATAAGCCACTGCAGAGTT+TGG | - | chr4.3:28884848-28884867 | MS.gene96826:intron | 45.0% | |
| ATGTGTATCAGTGAGAGGGA+GGG | - | chr4.3:28885052-28885071 | MS.gene96826:intron | 45.0% | |
| CATGACATGCAATGTGGATC+GGG | - | chr4.3:28886617-28886636 | MS.gene96826:intron | 45.0% | |
| CCCAACTCTCTCAATAGAGA+AGG | + | chr4.3:28885092-28885111 | None:intergenic | 45.0% | |
| CGCCATTGATCCTAGATCTA+AGG | + | chr4.3:28884728-28884747 | None:intergenic | 45.0% | |
| CTACATCTCCACATGCCTAA+AGG | + | chr4.3:28885116-28885135 | None:intergenic | 45.0% | |
| CTGTGATGTGTATCAGTGAG+AGG | - | chr4.3:28885047-28885066 | MS.gene96826:intron | 45.0% | |
| GACTGCTGATGTCATTGCAA+AGG | - | chr4.3:28884303-28884322 | MS.gene96826:intron | 45.0% | |
| GAGCTTCCTGACAACTATCA+AGG | - | chr4.3:28886138-28886157 | MS.gene96826:intron | 45.0% | |
| GATGCTTCTCTCTAACCCAA+AGG | + | chr4.3:28884617-28884636 | None:intergenic | 45.0% | |
| GCCTAGCCTAACAAACTATC+AGG | + | chr4.3:28885028-28885047 | None:intergenic | 45.0% | |
| GTTAGCAAATATCGCATCGC+CGG | + | chr4.3:28884007-28884026 | None:intergenic | 45.0% | |
| TCAGGTATCAATGAAGGCTG+AGG | - | chr4.3:28886726-28886745 | MS.gene96826:CDS | 45.0% | |
| TCGTCTTGGCTCATTGTTGT+TGG | - | chr4.3:28885728-28885747 | MS.gene96826:intron | 45.0% | |
| TGACCAATTGGGATGCTGAA+GGG | - | chr4.3:28886067-28886086 | MS.gene96826:intron | 45.0% | |
| TGAGAGAGTGAAGGGTCTTT+GGG | - | chr4.3:28884645-28884664 | MS.gene96826:CDS | 45.0% | |
| TTCAGCATCCCAATTGGTCA+CGG | + | chr4.3:28886067-28886086 | None:intergenic | 45.0% | |
| TTGAGAGAGTGAAGGGTCTT+TGG | - | chr4.3:28884644-28884663 | MS.gene96826:CDS | 45.0% | |
| TTGAGAGAGTTGGGACCTTT+AGG | - | chr4.3:28885098-28885117 | MS.gene96826:intron | 45.0% | |
| !! | CCCTGATAGTTTGTTAGGCT+AGG | - | chr4.3:28885024-28885043 | MS.gene96826:intron | 45.0% |
| AGTCCCTTCAGCATCCCAAT+TGG | + | chr4.3:28886073-28886092 | None:intergenic | 50.0% | |
| AGTGAGAGGGAGGGATTAGA+AGG | - | chr4.3:28885061-28885080 | MS.gene96826:intron | 50.0% | |
| AGTTGGGACCTTTAGGCATG+TGG | - | chr4.3:28885105-28885124 | MS.gene96826:intron | 50.0% | |
| ATCCCAATTGGTCACGGATG+CGG | + | chr4.3:28886061-28886080 | None:intergenic | 50.0% | |
| ATCGGGAGACCCTTGAAGTT+TGG | - | chr4.3:28884509-28884528 | MS.gene96826:intron | 50.0% | |
| CAATGAAGGCTGAGGTCACT+TGG | - | chr4.3:28886734-28886753 | MS.gene96826:CDS | 50.0% | |
| CAATGGGAATCATGGGATCC+TGG | - | chr4.3:28884935-28884954 | MS.gene96826:intron | 50.0% | |
| GATCGGTCCCCAAACTTCAA+GGG | + | chr4.3:28884521-28884540 | None:intergenic | 50.0% | |
| GATGTGTATCAGTGAGAGGG+AGG | - | chr4.3:28885051-28885070 | MS.gene96826:intron | 50.0% | |
| GTGACCAATTGGGATGCTGA+AGG | - | chr4.3:28886066-28886085 | MS.gene96826:intron | 50.0% | |
| GTGTCATGGCCTCTGTGAAT+CGG | - | chr4.3:28884491-28884510 | MS.gene96826:intron | 50.0% | |
| TACCGCATCCGTGACCAATT+GGG | - | chr4.3:28886056-28886075 | MS.gene96826:intron | 50.0% | |
| TCCTTCTTCACCTTCTCCAG+CGG | + | chr4.3:28884908-28884927 | None:intergenic | 50.0% | |
| TCGGGAGACCCTTGAAGTTT+GGG | - | chr4.3:28884510-28884529 | MS.gene96826:intron | 50.0% | |
| TGCAGAGTTTGGCAGCAGAA+GGG | - | chr4.3:28884859-28884878 | MS.gene96826:intron | 50.0% | |
| TGTCATGGCCTCTGTGAATC+GGG | - | chr4.3:28884492-28884511 | MS.gene96826:intron | 50.0% | |
| TTACCGCATCCGTGACCAAT+TGG | - | chr4.3:28886055-28886074 | MS.gene96826:intron | 50.0% | |
| AAGGGTCTCCCGATTCACAG+AGG | + | chr4.3:28884503-28884522 | None:intergenic | 55.0% | |
| ACCGCTGGAGAAGGTGAAGA+AGG | - | chr4.3:28884904-28884923 | MS.gene96826:intron | 55.0% | |
| CGGGAGACCCTTGAAGTTTG+GGG | - | chr4.3:28884511-28884530 | MS.gene96826:intron | 55.0% | |
| CTGCAGAGTTTGGCAGCAGA+AGG | - | chr4.3:28884858-28884877 | MS.gene96826:intron | 55.0% | |
| GGATCGGTCCCCAAACTTCA+AGG | + | chr4.3:28884522-28884541 | None:intergenic | 55.0% | |
| GGGAATCATGGGATCCTGGT+CGG | - | chr4.3:28884939-28884958 | MS.gene96826:intron | 55.0% | |
| TACTCTGCAATCGACACCGC+TGG | - | chr4.3:28884889-28884908 | MS.gene96826:intron | 55.0% | |
| TCTGCTGCCAAACTCTGCAG+TGG | + | chr4.3:28884858-28884877 | None:intergenic | 55.0% | |
| TGGCTACGAGATGTGCTTCG+AGG | - | chr4.3:28886754-28886773 | MS.gene96826:CDS | 55.0% | |
| TGGGGACCGATCCTGTCATT+AGG | - | chr4.3:28884529-28884548 | MS.gene96826:intron | 55.0% | |
| ! | CGGACCTATGTGCTGCTACT+TGG | - | chr4.3:28885894-28885913 | MS.gene96826:intron | 55.0% |
| !! | AATATCGCATCGCCGGTTCG+AGG | + | chr4.3:28884000-28884019 | None:intergenic | 55.0% |
| GCAATCGACACCGCTGGAGA+AGG | - | chr4.3:28884895-28884914 | MS.gene96826:intron | 60.0% | |
| GCTCCTGTTGCTCCTCGAAC+CGG | - | chr4.3:28883985-28884004 | MS.gene96826:CDS | 60.0% | |
| TCACGGATGCGGTAACACCG+AGG | + | chr4.3:28886050-28886069 | None:intergenic | 60.0% | |
| !! | TCGCCGGTTCGAGGAGCAAC+AGG | + | chr4.3:28883991-28884010 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28883982 | 28886852 | 28883982 | ID=MS.gene96826 |
| chr4.3 | mRNA | 28883982 | 28886852 | 28883982 | ID=MS.gene96826.t1;Parent=MS.gene96826 |
| chr4.3 | exon | 28886698 | 28886852 | 28886698 | ID=MS.gene96826.t1.exon1;Parent=MS.gene96826.t1 |
| chr4.3 | CDS | 28886698 | 28886852 | 28886698 | ID=cds.MS.gene96826.t1;Parent=MS.gene96826.t1 |
| chr4.3 | exon | 28886510 | 28886609 | 28886510 | ID=MS.gene96826.t1.exon2;Parent=MS.gene96826.t1 |
| chr4.3 | CDS | 28886510 | 28886609 | 28886510 | ID=cds.MS.gene96826.t1;Parent=MS.gene96826.t1 |
| chr4.3 | exon | 28884622 | 28884804 | 28884622 | ID=MS.gene96826.t1.exon3;Parent=MS.gene96826.t1 |
| chr4.3 | CDS | 28884622 | 28884804 | 28884622 | ID=cds.MS.gene96826.t1;Parent=MS.gene96826.t1 |
| chr4.3 | exon | 28883982 | 28884104 | 28883982 | ID=MS.gene96826.t1.exon4;Parent=MS.gene96826.t1 |
| chr4.3 | CDS | 28883982 | 28884104 | 28883982 | ID=cds.MS.gene96826.t1;Parent=MS.gene96826.t1 |
| Gene Sequence |
| Protein sequence |
