AlfalfaGEDB | MS.gene97679

M. sativa cultivar XinJiangDaYe / MS.gene97679

KEGG: K24188
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97679.t1	XP_013442420.1	94.9	506	26	0	1	506	1	506	1.20E-279	971.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97679.t1	O81973	58.2	505	203	6	8	504	4	508	4.7e-168	592.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97679.t1	A0A072TSC7	94.9	506	26	0	1	506	1	506	8.5e-280	971.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene97679	0.80169	8.00E-49	-1.69E-46
MS.gene049346	MS.gene97679	0.80768	4.49E-50	-1.69E-46
MS.gene049681	MS.gene97679	0.809223	2.10E-50	-1.69E-46
MS.gene052485	MS.gene97679	0.800114	1.68E-48	-1.69E-46
MS.gene053074	MS.gene97679	0.813121	3.00E-51	-1.69E-46
MS.gene053836	MS.gene97679	0.809443	1.89E-50	-1.69E-46
MS.gene054010	MS.gene97679	0.824944	6.14E-54	-1.69E-46
MS.gene054011	MS.gene97679	0.811522	6.71E-51	-1.69E-46
MS.gene054012	MS.gene97679	0.823018	1.74E-53	-1.69E-46
MS.gene054013	MS.gene97679	0.82028	7.46E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97679.t1	MTR_0181s0030	94.862	506	26	0	1	506	1	506	0.0	1002
MS.gene97679.t1	MTR_0171s0020	71.765	510	138	4	1	504	1	510	0.0	777
MS.gene97679.t1	MTR_0171s0010	69.727	512	147	4	1	504	1	512	0.0	744
MS.gene97679.t1	MTR_8g469300	72.353	510	136	5	1	505	1	510	0.0	738
MS.gene97679.t1	MTR_8g468780	72.336	441	118	4	69	505	1	441	0.0	670
MS.gene97679.t1	MTR_7g092620	62.574	505	183	4	6	505	7	510	0.0	645
MS.gene97679.t1	MTR_0171s0030	70.167	419	122	1	86	501	1	419	0.0	627
MS.gene97679.t1	MTR_3g020780	52.569	506	230	4	6	501	7	512	0.0	561
MS.gene97679.t1	MTR_4g062500	46.263	495	248	6	28	504	28	522	2.93e-166	481
MS.gene97679.t1	MTR_7g028020	45.614	513	245	7	9	500	10	509	1.35e-160	466

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97679.t1	AT5G06900	46.813	502	254	7	1	499	1	492	1.41e-163	473
MS.gene97679.t1	AT2G42250	41.350	474	270	3	35	502	42	513	6.03e-134	398
MS.gene97679.t1	AT1G50520	39.149	470	274	6	43	505	52	516	1.29e-120	364
MS.gene97679.t1	AT3G20950	40.657	487	265	11	35	506	43	520	4.06e-120	363
MS.gene97679.t1	AT3G20100	39.915	471	259	6	43	500	50	509	8.98e-120	362
MS.gene97679.t1	AT3G20130	39.957	463	263	8	45	499	53	508	4.85e-118	357
MS.gene97679.t1	AT3G20090	40.652	460	264	7	45	499	54	509	1.20e-117	356
MS.gene97679.t1	AT1G50560	40.645	465	263	7	45	501	54	513	5.00e-117	355
MS.gene97679.t1	AT3G20940	38.669	481	280	8	35	506	43	517	3.17e-116	353
MS.gene97679.t1	AT4G15330	38.750	480	285	6	23	498	27	501	9.85e-116	351

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Find 115 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGATGTTGAAGAAATT+AGG	0.244788	1.1:-39613840	MS.gene97679:CDS
AACCAGCTTTAACCCTTCCT+AGG	0.453683	1.1:-39611574	MS.gene97679:CDS
AACTTCCAATAGTCACCATA+AGG	0.535140	1.1:+39614072	None:intergenic
AAGAAGAAGGTGCTCATGAT+AGG	0.353371	1.1:-39613642	MS.gene97679:CDS
AAGGTGTCCAATGATAGGTA+AGG	0.636083	1.1:+39614314	None:intergenic
AAGTGATGTTGAAGAAATTA+GGG	0.383643	1.1:-39613839	MS.gene97679:CDS
AATACATAAAAGGCTTAAAG+TGG	0.557551	1.1:-39613731	MS.gene97679:CDS
AATGACTCTTGTTGCATCAA+GGG	0.488521	1.1:+39613991	None:intergenic
AATGTTGGAGAGGGCTATAA+GGG	0.475233	1.1:-39613689	MS.gene97679:CDS
AATTTGCAATATATGCCATT+TGG	0.389763	1.1:-39611722	MS.gene97679:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAAGGAAAAAGAAGA+AGG	-	chr1.1:39612294-39612313	MS.gene97679:intron	30.0%
AATGCATCATATATCAAGGT+GGG	-	chr1.1:39613681-39613700	MS.gene97679:CDS	30.0%
ACAAATATAATTGTCTTCGC+CGG	+	chr1.1:39614101-39614120	None:intergenic	30.0%
ATGCTATTAAAACGAGGAAT+AGG	+	chr1.1:39614422-39614441	None:intergenic	30.0%
CAAATAGAATATGGCTCAAA+GGG	-	chr1.1:39611841-39611860	MS.gene97679:CDS	30.0%
CCAAGAAAAAGTTGCATTAT+AGG	+	chr1.1:39611718-39611737	None:intergenic	30.0%
CGTATATGGTTATGATATTC+CGG	-	chr1.1:39614079-39614098	MS.gene97679:CDS	30.0%
GATAAACAACCCACATTTAA+TGG	-	chr1.1:39613896-39613915	MS.gene97679:CDS	30.0%
GATGCTTCTTTAACTATAAG+TGG	+	chr1.1:39614047-39614066	None:intergenic	30.0%
GTTTGAGAAGAAAGTTTCAT+TGG	+	chr1.1:39611797-39611816	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	39611517	39614454	39611517	ID=MS.gene97679
chr1.1	mRNA	39611517	39614454	39611517	ID=MS.gene97679.t1;Parent=MS.gene97679
chr1.1	exon	39613555	39614454	39613555	ID=MS.gene97679.t1.exon1;Parent=MS.gene97679.t1
chr1.1	CDS	39613555	39614454	39613555	ID=cds.MS.gene97679.t1;Parent=MS.gene97679.t1
chr1.1	exon	39611517	39612137	39611517	ID=MS.gene97679.t1.exon2;Parent=MS.gene97679.t1
chr1.1	CDS	39611517	39612137	39611517	ID=cds.MS.gene97679.t1;Parent=MS.gene97679.t1

Gene Sequence

>MS.gene97679

ATGGCTGAAATGCAATATATCCAACTTTTCTTTGTTTGGCTACTCTCCATTATAGCAGTTCGAGCCATACTAACTAGAAAGAAGAACAAAAACCATCTTACTCCACCGTCTCCTCCAGCCTTACCTATCATTGGACACCTTCACCTTATTTCTAAAGTACCTCACCAAAGTTTTCACAAACTCTCAAAACACTATGGTCCTATAATGCAACTTTTTCTTGGCTCTAAGCGATGTATAGTAGTTTCAAGTCCAGATATCGCAAAGGAGTTTCTTAAAACCAATGAAACTTTCTTCTCAAACCGTTTTGCAAATGCTGCAGTTCAGCAAATAGAATATGGCTCAAAGGGATTTGTGTTTGCACCTTATGGTGACTATTGGAAGTTCGTTAAGAAGTTGTGCATGTCAGAGCTTCTTGGTAAAAGAACACTTGATCAGTTCCTTCCCTTGATGCAACAAGAGTCATTGAGGTTTTTAAAACTTTTGCAGAAGAAAGGAGAAGCTGGCAAGGCCGTTGATATCGGCGGCGAGCTCTTAACTCTCACCAACAACATTATAGCAAGGATGTCAATAAGTAAAACATGTTCTGAAAATGAAAGTGATGTTGAAGAAATTAGGGAGATGCTGAAAGACATTTTAGAGCTTGGAGGGACGTTTAATGTGTCAGATTTTATTTGGTTTTGCAAGAATTTGGATTTACAGGGAATACATAAAAGGCTTAAAGTGGCTATGGAAAGGTTTGACATAATGTTGGAGAGGGCTATAAGGGAGCATCAGGAGAAAAGGAAGGAAAAAGAAGAAGGTGCTCATGATAGGGATATACTTGATATTTTGTTGGACATACTTGAGGATAAGAGCTATGAAATAACATTGACCAAAGAGAATGTCAAAGCTTTCATTGTGGTATGCAAATTTTCTAACTTCTATATATTTATTTCACTTATTATGATCAGCGTATTATTCATTTATGTCCAGAAGTCCTTTGTTAATTAGGAAAAAAAAATAGACTTCGTACTTGTTTGTCTATATGTGTTTTATTTATGGAAAATGCTAATTCGCCTTAAAGATACATTTTAAGGAATTTATTATAGAAATATATATTTTTCAATACAAAATTGTTCTTGAGTTGCATAGCATGCGTCTTTAAGACACAAGTTAGCATGATCCATTATTTATTTTTTGTATGTATTTATACTATGTGGTTATTATTATAAACAAAACTCTACATTATAGATTTATTTAATTAATGATGTATATGATCCTTATTACAGACCATATAGACCATATACATTATTTAATGAATGAATTTAAAATATTGATTTTTGTTTATTATAATGATGTGATGATGTATTTGCGTAAACCAACAGTAAAGCAACAAAGTGAACTTCATAATTGTCGGTTGAAAGTTTATAAAGACAAGTCTAGATAGTTTCTAAATTATTAAATTATATTAAATTTGCAAGTGGATATTGTGCCGTTGTTATAGATTTTAAAGTGATTTTTCCCTTGTATTTTATAAAATAAAATGATATTTTCGGAATCTTACTACAAAACATATTTGTTGAAGTTAAAATAAAGATTTTTGACATTCACTAGCTTAAATATTTGTATTAAAGTTTTTGAATAATAACCATCATATATTTCTCAAAATGATATCTCTCAAAAATAAATTTTATGAAAAACTATTTGAAATAACTTCTTATCTTACAAATTTCAATCAAGCCTGCAAAAAGTCGTTCAAAATTTTAAAAAATTTATAGATAATTAAATAAACTTAAATTTAACAGCTACTAAAACTTTATGCTAAATTTTTTTAGGGACGAAAAACATGTCAACTTTTTTATGAGAATTAAAATAAAAATTTAATACTCCCTCTAGTCACATTTATAAGCAAAAAACACTTTTTTTAGATACATTGAATAATTAATGTATCTAGTCACATTTATAGGTCAGGTACATTAATTGTTCAATATACCTAAAAATTTGTTTTTTGCTTATAAATGTGACCGGAGGGAGTATATTTAAACTGACAAAAAACTTATTTAACCATGAAATCTTATAATCTTAGTTGTTTGGTAAAATAAAATCTTTGTTTTAAACTTGGACGGAGTAGACTTACTTCCAACATAGCAACAATTCCAGTGAGCTTAGTTCAGTTGGTAAGAATAATGCATCATATATCAAGGTGGGTTCGAAACCCGGACATCACCAAAAAAAAAAACTTCGAACATAGAAACAGCTGACATTGGAGCAGCTAACCTATACGGATTAATTGTATTTTGCTTAAAAAGATTATAATTTTAGTCTATGGTTTTTGCAGGACATGTTTATTGCGGGAACAGACACATCTGCCATAACAATGGAGTGGGCTTTGGCTGAGTTGATAAACAACCCACATTTAATGGAGAAAGCAAGACAGGAGATTGATTCAGTAACAGAAAATAGTAGATTAATTCAAGGATCTGATCTTCCAAAACTTCCATACTTGCATGCAATACTAAAAGAAACTCTTAGAATTCACCCTACAGTACCACTTATAGTTAAAGAAGCATCTGAAAGTTGCGTCGTATATGGTTATGATATTCCGGCGAAGACAATTATATTTGTTGATTTGTGGTCAATGGGTAGGGATCCCAAACTGTGGGAAAACCCGCTCGAGTTCAAGCCAGAGAGGTTTATGAGTGAAGGGAATAAGTTTGATTTTAAGGGACAGAATTTGCAATATATGCCATTTGGAACTGGAAGAAGGGCTTGCCCTGGTGCTTCATTAGCACTTCAAGCTGTTCCAACAAATCTTGCTGCAATGATTCAATGTTTCTATTGGAAGGTTAGTGGTGATGGAACAGTTAACATGGAAGAGAAACCAGCTTTAACCCTTCCTAGGGTTCATCCTTTGATGTGTGTCCCTATTCCTCGTTTTAATAGCATTCCTTCTAATTAA

Protein sequence

>MS.gene97679.t1

MAEMQYIQLFFVWLLSIIAVRAILTRKKNKNHLTPPSPPALPIIGHLHLISKVPHQSFHKLSKHYGPIMQLFLGSKRCIVVSSPDIAKEFLKTNETFFSNRFANAAVQQIEYGSKGFVFAPYGDYWKFVKKLCMSELLGKRTLDQFLPLMQQESLRFLKLLQKKGEAGKAVDIGGELLTLTNNIIARMSISKTCSENESDVEEIREMLKDILELGGTFNVSDFIWFCKNLDLQGIHKRLKVAMERFDIMLERAIREHQEKRKEKEEGAHDRDILDILLDILEDKSYEITLTKENVKAFIVDMFIAGTDTSAITMEWALAELINNPHLMEKARQEIDSVTENSRLIQGSDLPKLPYLHAILKETLRIHPTVPLIVKEASESCVVYGYDIPAKTIIFVDLWSMGRDPKLWENPLEFKPERFMSEGNKFDFKGQNLQYMPFGTGRRACPGASLALQAVPTNLAAMIQCFYWKVSGDGTVNMEEKPALTLPRVHPLMCVPIPRFNSIPSN