Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98533.t1 | XP_003616838.2 | 93.7 | 587 | 37 | 0 | 1 | 587 | 33 | 619 | 7.3e-310 | 1072.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98533.t1 | Q9M219 | 26.1 | 524 | 370 | 8 | 75 | 585 | 36 | 555 | 3.3e-48 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98533.t1 | G7K7G6 | 93.7 | 587 | 37 | 0 | 1 | 587 | 1 | 587 | 5.2e-310 | 1072.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98533.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene98533 | 0.804764 | 1.85E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene98533 | 0.81696 | 4.22E-52 | -1.69E-46 |
| MS.gene051064 | MS.gene98533 | 0.831706 | 1.43E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene98533 | 0.820482 | 6.70E-53 | -1.69E-46 |
| MS.gene052586 | MS.gene98533 | 0.810086 | 1.37E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene98533 | 0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene056087 | MS.gene98533 | 0.810871 | 9.29E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene98533 | 0.811033 | 8.57E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene98533 | 0.824683 | 7.07E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene98533 | 0.817212 | 3.71E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene98533 | 0.828641 | 8.03E-55 | -1.69E-46 |
| MS.gene058500 | MS.gene98533 | 0.815325 | 9.80E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene98533 | 0.831293 | 1.81E-55 | -1.69E-46 |
| MS.gene059830 | MS.gene98533 | 0.80044 | 1.44E-48 | -1.69E-46 |
| MS.gene059935 | MS.gene98533 | 0.804455 | 2.14E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene98533 | 0.803122 | 4.05E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene98533 | 0.825545 | 4.42E-54 | -1.69E-46 |
| MS.gene060669 | MS.gene98533 | 0.800174 | 1.63E-48 | -1.69E-46 |
| MS.gene060879 | MS.gene98533 | 0.803974 | 2.70E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene98533 | -0.809366 | 1.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98533.t1 | MTR_5g084810 | 95.741 | 587 | 25 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1144 |
| MS.gene98533.t1 | MTR_7g093000 | 35.135 | 555 | 345 | 6 | 34 | 579 | 15 | 563 | 2.99e-105 | 328 |
| MS.gene98533.t1 | MTR_8g005155 | 26.606 | 545 | 373 | 11 | 48 | 575 | 18 | 552 | 3.57e-54 | 193 |
| MS.gene98533.t1 | MTR_7g080620 | 25.000 | 552 | 383 | 12 | 46 | 575 | 30 | 572 | 5.32e-44 | 167 |
| MS.gene98533.t1 | MTR_8g080990 | 20.690 | 319 | 233 | 7 | 256 | 571 | 62 | 363 | 1.23e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98533.t1 | AT4G19650 | 47.093 | 516 | 271 | 2 | 68 | 583 | 79 | 592 | 5.34e-170 | 496 |
| MS.gene98533.t1 | AT4G19650 | 44.981 | 518 | 281 | 3 | 68 | 583 | 60 | 575 | 1.18e-156 | 461 |
| MS.gene98533.t1 | AT5G45113 | 43.062 | 418 | 232 | 2 | 168 | 583 | 1 | 414 | 1.70e-114 | 347 |
| MS.gene98533.t1 | AT5G06810 | 34.595 | 555 | 359 | 3 | 29 | 581 | 29 | 581 | 6.48e-105 | 328 |
| MS.gene98533.t1 | AT5G06811 | 34.215 | 567 | 353 | 5 | 22 | 581 | 24 | 577 | 1.05e-99 | 315 |
| MS.gene98533.t1 | AT3G60400 | 26.118 | 559 | 386 | 12 | 42 | 585 | 9 | 555 | 1.84e-52 | 189 |
| MS.gene98533.t1 | AT1G74120 | 25.311 | 241 | 151 | 6 | 347 | 579 | 186 | 405 | 6.35e-11 | 65.1 |
Find 97 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTAAACTCTCTAAAA+AGG | 0.136872 | 5.2:+72326068 | None:intergenic |
| GTGGAGAAAGAGCGGGAATT+TGG | 0.207920 | 5.2:+72326313 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5.2:-72325373 | MS.gene98533:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5.2:-72325221 | MS.gene98533:CDS |
| AAAGGGTTCAAATTCGTTAA+TGG | 0.216359 | 5.2:+72326086 | None:intergenic |
| ATTTCAAGATTATGAAGATT+TGG | 0.259240 | 5.2:-72325866 | MS.gene98533:CDS |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5.2:-72325185 | MS.gene98533:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5.2:+72325017 | None:intergenic |
| GAATTGGGATTGAGAGTAAA+TGG | 0.269440 | 5.2:-72325741 | MS.gene98533:CDS |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5.2:+72325319 | None:intergenic |
| CTTGATTGGTTGAAAAGAAT+TGG | 0.282428 | 5.2:-72325757 | MS.gene98533:CDS |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5.2:+72325031 | None:intergenic |
| TGCCAGATTGTTGGACCTTC+AGG | 0.287973 | 5.2:+72324779 | None:intergenic |
| TTTCAAGATTATGAAGATTT+GGG | 0.302755 | 5.2:-72325865 | MS.gene98533:CDS |
| TCCATTGGAGCTTATTAGTT+TGG | 0.304432 | 5.2:-72325284 | MS.gene98533:CDS |
| GTGGCGCGTTTGATGTAAAT+TGG | 0.314083 | 5.2:+72326291 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5.2:-72326052 | MS.gene98533:CDS |
| AGGAAGCTGTTCTTGTTTCT+AGG | 0.327574 | 5.2:-72325571 | MS.gene98533:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5.2:+72326152 | None:intergenic |
| TGTTTGTTGTCCTTTGCTTT+TGG | 0.333098 | 5.2:-72325812 | MS.gene98533:CDS |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.341540 | 5.2:+72326314 | None:intergenic |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5.2:-72325346 | MS.gene98533:CDS |
| AGTTTGTTGTTGTTCTTGAT+TGG | 0.351137 | 5.2:-72325771 | MS.gene98533:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5.2:+72325225 | None:intergenic |
| AAGGGTTCAAATTCGTTAAT+GGG | 0.353680 | 5.2:+72326087 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5.2:-72325970 | MS.gene98533:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5.2:-72325122 | MS.gene98533:CDS |
| TTGATTGGTTGAAAAGAATT+GGG | 0.361761 | 5.2:-72325756 | MS.gene98533:CDS |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5.2:+72326018 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5.2:+72324959 | None:intergenic |
| AAATGGAAGAAGATGGGTTT+TGG | 0.374297 | 5.2:+72326373 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5.2:-72325142 | MS.gene98533:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5.2:-72325089 | MS.gene98533:CDS |
| GGTGCAAGAAATTGGGGTTT+TGG | 0.381606 | 5.2:+72326394 | None:intergenic |
| TTTATACGTTGCCAGATTGT+TGG | 0.388911 | 5.2:+72324770 | None:intergenic |
| TTGAAAGAAATGGAAGAAGA+TGG | 0.405404 | 5.2:+72326366 | None:intergenic |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5.2:-72325896 | MS.gene98533:CDS |
| CGAATAGAGCACGCTGTGCT+TGG | 0.423908 | 5.2:+72326262 | None:intergenic |
| ATCCTGAAGGTCCAACAATC+TGG | 0.424676 | 5.2:-72324781 | MS.gene98533:CDS |
| TCTAGGTCGGTTTATTAAGT+CGG | 0.428427 | 5.2:-72325554 | MS.gene98533:CDS |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5.2:+72324960 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5.2:-72325353 | MS.gene98533:CDS |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5.2:-72325192 | MS.gene98533:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5.2:-72325212 | MS.gene98533:CDS |
| CTAGGTCGGTTTATTAAGTC+GGG | 0.441636 | 5.2:-72325553 | MS.gene98533:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5.2:-72325113 | MS.gene98533:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5.2:-72325969 | MS.gene98533:CDS |
| AGACCTTCCAACAACAAATT+CGG | 0.457193 | 5.2:+72325598 | None:intergenic |
| TGAAAGAAATGGAAGAAGAT+GGG | 0.458028 | 5.2:+72326367 | None:intergenic |
| ACACTTACTCGACAATATAT+CGG | 0.459640 | 5.2:+72325489 | None:intergenic |
| CATATGTATGATTTGTTCAA+GGG | 0.474363 | 5.2:-72325625 | MS.gene98533:CDS |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5.2:-72325193 | MS.gene98533:CDS |
| ATCTTCGCCATTCGATTCCT+CGG | 0.482527 | 5.2:+72325943 | None:intergenic |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5.2:-72324891 | MS.gene98533:CDS |
| ACATATGTATGATTTGTTCA+AGG | 0.498470 | 5.2:-72325626 | MS.gene98533:CDS |
| GATCCGAATTTGTTGTTGGA+AGG | 0.498949 | 5.2:-72325601 | MS.gene98533:CDS |
| TTAGGGTTGAAGAGAAAGAA+TGG | 0.499067 | 5.2:+72326447 | None:intergenic |
| AGCTGTTCTTGTTTCTAGGT+CGG | 0.500050 | 5.2:-72325567 | MS.gene98533:CDS |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5.2:-72325094 | MS.gene98533:CDS |
| CTTCTAAACAGAAACATAAG+AGG | 0.503889 | 5.2:-72325261 | MS.gene98533:CDS |
| CTAGTTCTAGCACTTATAGC+TGG | 0.504313 | 5.2:-72325702 | MS.gene98533:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5.2:-72324886 | MS.gene98533:CDS |
| ATTTGTTGTTGGAAGGTCTA+GGG | 0.509859 | 5.2:-72325594 | MS.gene98533:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5.2:-72325167 | MS.gene98533:CDS |
| AATTTGTTGTTGGAAGGTCT+AGG | 0.516290 | 5.2:-72325595 | MS.gene98533:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5.2:-72325136 | MS.gene98533:CDS |
| GTAAATTGGTGGAGAAAGAG+CGG | 0.528173 | 5.2:+72326305 | None:intergenic |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5.2:-72325968 | MS.gene98533:CDS |
| TAGGGTTGAAGAGAAAGAAT+GGG | 0.541091 | 5.2:+72326448 | None:intergenic |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5.2:-72325141 | MS.gene98533:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5.2:+72326177 | None:intergenic |
| GCCAAACTAATAAGCTCCAA+TGG | 0.546201 | 5.2:+72325283 | None:intergenic |
| AATCATAAACGATGATCCAT+TGG | 0.546725 | 5.2:-72325299 | MS.gene98533:CDS |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5.2:+72324841 | None:intergenic |
| AGAAAGAGCGGGAATTTGGG+TGG | 0.556121 | 5.2:+72326317 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5.2:-72325065 | MS.gene98533:CDS |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5.2:+72325124 | None:intergenic |
| TAAATTGGTGGAGAAAGAGC+GGG | 0.577774 | 5.2:+72326306 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5.2:-72325253 | MS.gene98533:CDS |
| TGTGTTATCATGGGGTTCCG+AGG | 0.589302 | 5.2:-72325960 | MS.gene98533:CDS |
| GAAAGTGAAAGAGTTCCCAT+TGG | 0.599604 | 5.2:+72326486 | None:intergenic |
| AAACAGAAACATAAGAGGAG+TGG | 0.607869 | 5.2:-72325256 | MS.gene98533:CDS |
| GCGCGTTTGATGTAAATTGG+TGG | 0.610008 | 5.2:+72326294 | None:intergenic |
| TGTTGTTGGAAGGTCTAGGG+AGG | 0.611420 | 5.2:-72325591 | MS.gene98533:CDS |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5.2:-72325362 | MS.gene98533:CDS |
| TGGGGTTCCGAGGAATCGAA+TGG | 0.633090 | 5.2:-72325950 | MS.gene98533:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5.2:-72325252 | MS.gene98533:CDS |
| ATATGTATGATTTGTTCAAG+GGG | 0.636636 | 5.2:-72325624 | MS.gene98533:CDS |
| ACATCACCAACCAAAAGCAA+AGG | 0.637648 | 5.2:+72325802 | None:intergenic |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5.2:-72324898 | MS.gene98533:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5.2:-72326150 | MS.gene98533:CDS |
| TATATTGTCGAGTAAGTGTG+TGG | 0.647992 | 5.2:-72325485 | MS.gene98533:CDS |
| TTTGTGAATATGCATCCTGA+AGG | 0.654931 | 5.2:-72324794 | MS.gene98533:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5.2:-72325173 | MS.gene98533:CDS |
| TATGTATGATTTGTTCAAGG+GGG | 0.703088 | 5.2:-72325623 | MS.gene98533:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5.2:-72326058 | MS.gene98533:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5.2:+72325086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTTCATATAATGAAAAA+CGG | - | chr5.2:72326396-72326415 | MS.gene98533:CDS | 15.0% |
| !!! | TTTTTCATTATATGAAACTA+TGG | + | chr5.2:72326396-72326415 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATAATATTCGAA+TGG | - | chr5.2:72325785-72325804 | MS.gene98533:CDS | 15.0% |
| !! | ATTTCAAGATTATGAAGATT+TGG | - | chr5.2:72325359-72325378 | MS.gene98533:CDS | 20.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | - | chr5.2:72326239-72326258 | MS.gene98533:CDS | 20.0% |
| !! | TTTCAAGATTATGAAGATTT+GGG | - | chr5.2:72325360-72325379 | MS.gene98533:CDS | 20.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | + | chr5.2:72325210-72325229 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | - | chr5.2:72326013-72326032 | MS.gene98533:CDS | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | - | chr5.2:72325256-72325275 | MS.gene98533:CDS | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | - | chr5.2:72325192-72325211 | MS.gene98533:CDS | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | - | chr5.2:72325255-72325274 | MS.gene98533:CDS | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | + | chr5.2:72326211-72326230 | None:intergenic | 25.0% |
| !! | AATTCCTAAACTCTCTAAAA+AGG | + | chr5.2:72325160-72325179 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+GGG | + | chr5.2:72325159-72325178 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | + | chr5.2:72326014-72326033 | None:intergenic | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | - | chr5.2:72325469-72325488 | MS.gene98533:CDS | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | + | chr5.2:72326013-72326032 | None:intergenic | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | - | chr5.2:72325599-72325618 | MS.gene98533:CDS | 25.0% |
| !!! | ATATGTATGATTTGTTCAAG+GGG | - | chr5.2:72325601-72325620 | MS.gene98533:CDS | 25.0% |
| !!! | CATATGTATGATTTGTTCAA+GGG | - | chr5.2:72325600-72325619 | MS.gene98533:CDS | 25.0% |
| !!! | GGTTGAATTTTTGAAAGAAA+TGG | + | chr5.2:72324872-72324891 | None:intergenic | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | - | chr5.2:72325564-72325583 | MS.gene98533:CDS | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | - | chr5.2:72325563-72325582 | MS.gene98533:CDS | 25.0% |
| AAAGGGTTCAAATTCGTTAA+TGG | + | chr5.2:72325142-72325161 | None:intergenic | 30.0% | |
| AAGCAGTAAAATTGTTTCCA+GGG | - | chr5.2:72326084-72326103 | MS.gene98533:CDS | 30.0% | |
| AAGGGTTCAAATTCGTTAAT+GGG | + | chr5.2:72325141-72325160 | None:intergenic | 30.0% | |
| AATCATAAACGATGATCCAT+TGG | - | chr5.2:72325926-72325945 | MS.gene98533:CDS | 30.0% | |
| ACACTTACTCGACAATATAT+CGG | + | chr5.2:72325739-72325758 | None:intergenic | 30.0% | |
| ATATGAAACTATGGTACTCA+AGG | + | chr5.2:72326387-72326406 | None:intergenic | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | + | chr5.2:72326268-72326287 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | + | chr5.2:72325051-72325070 | None:intergenic | 30.0% | |
| CTTCTAAACAGAAACATAAG+AGG | - | chr5.2:72325964-72325983 | MS.gene98533:CDS | 30.0% | |
| GAGTTTAGGAATTAATCACA+CGG | - | chr5.2:72325167-72325186 | MS.gene98533:CDS | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | + | chr5.2:72326269-72326288 | None:intergenic | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | - | chr5.2:72325257-72325276 | MS.gene98533:CDS | 30.0% | |
| TGAAAGAAATGGAAGAAGAT+GGG | + | chr5.2:72324861-72324880 | None:intergenic | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | - | chr5.2:72325863-72325882 | MS.gene98533:CDS | 30.0% | |
| TTGAAAGAAATGGAAGAAGA+TGG | + | chr5.2:72324862-72324881 | None:intergenic | 30.0% | |
| TTGAGCAAACATTCGATAAA+AGG | - | chr5.2:72325852-72325871 | MS.gene98533:CDS | 30.0% | |
| ! | ATTCTGCATAAATCAGCTTT+TGG | + | chr5.2:72325909-72325928 | None:intergenic | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | - | chr5.2:72325468-72325487 | MS.gene98533:CDS | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | - | chr5.2:72325454-72325473 | MS.gene98533:CDS | 30.0% |
| !! | ATACCCAACATACTTTTTAC+AGG | - | chr5.2:72326286-72326305 | MS.gene98533:CDS | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+GGG | - | chr5.2:72325602-72325621 | MS.gene98533:CDS | 30.0% |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | - | chr5.2:72325321-72325340 | MS.gene98533:CDS | 30.0% |
| AAACAGAAACATAAGAGGAG+TGG | - | chr5.2:72325969-72325988 | MS.gene98533:CDS | 35.0% | |
| AGACCTTCCAACAACAAATT+CGG | + | chr5.2:72325630-72325649 | None:intergenic | 35.0% | |
| AGGAATTAATCACACGGAAT+TGG | - | chr5.2:72325173-72325192 | MS.gene98533:CDS | 35.0% | |
| CAAGAGTTTCAATGTATGAG+TGG | - | chr5.2:72326327-72326346 | MS.gene98533:CDS | 35.0% | |
| CCCAAAAATTTCTCTTGCTT+CGG | + | chr5.2:72325313-72325332 | None:intergenic | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | + | chr5.2:72326197-72326216 | None:intergenic | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | - | chr5.2:72326083-72326102 | MS.gene98533:CDS | 35.0% | |
| GAATTGGGATTGAGAGTAAA+TGG | - | chr5.2:72325484-72325503 | MS.gene98533:CDS | 35.0% | |
| TAGGGTTGAAGAGAAAGAAT+GGG | + | chr5.2:72324780-72324799 | None:intergenic | 35.0% | |
| TATATTGTCGAGTAAGTGTG+TGG | - | chr5.2:72325740-72325759 | MS.gene98533:CDS | 35.0% | |
| TCCATTGGAGCTTATTAGTT+TGG | - | chr5.2:72325941-72325960 | MS.gene98533:CDS | 35.0% | |
| TTAGGGTTGAAGAGAAAGAA+TGG | + | chr5.2:72324781-72324800 | None:intergenic | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | - | chr5.2:72326334-72326353 | MS.gene98533:CDS | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | - | chr5.2:72326004-72326023 | MS.gene98533:CDS | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | + | chr5.2:72326003-72326022 | None:intergenic | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | + | chr5.2:72326458-72326477 | None:intergenic | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | - | chr5.2:72326431-72326450 | MS.gene98533:CDS | 35.0% | |
| ! | ACCGAAGCAAGAGAAATTTT+TGG | - | chr5.2:72325309-72325328 | MS.gene98533:CDS | 35.0% |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | + | chr5.2:72326293-72326312 | None:intergenic | 35.0% |
| ! | CCGAAGCAAGAGAAATTTTT+GGG | - | chr5.2:72325310-72325329 | MS.gene98533:CDS | 35.0% |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | + | chr5.2:72326292-72326311 | None:intergenic | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | + | chr5.2:72325040-72325059 | None:intergenic | 35.0% |
| ! | GTGAGAAAAATTGGGGTTTT+GGG | + | chr5.2:72324812-72324831 | None:intergenic | 35.0% |
| ! | TCTAGGTCGGTTTATTAAGT+CGG | - | chr5.2:72325671-72325690 | MS.gene98533:CDS | 35.0% |
| ! | TGAGAAAAATTGGGGTTTTG+GGG | + | chr5.2:72324811-72324830 | None:intergenic | 35.0% |
| !! | AAATGGAAGAAGATGGGTTT+TGG | + | chr5.2:72324855-72324874 | None:intergenic | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | - | chr5.2:72326292-72326311 | MS.gene98533:CDS | 35.0% |
| !! | AATTTGTTGTTGGAAGGTCT+AGG | - | chr5.2:72325630-72325649 | MS.gene98533:CDS | 35.0% |
| !! | ATTTGTTGTTGGAAGGTCTA+GGG | - | chr5.2:72325631-72325650 | MS.gene98533:CDS | 35.0% |
| !! | GAACCCTTTTTAGAGAGTTT+AGG | - | chr5.2:72325153-72325172 | MS.gene98533:CDS | 35.0% |
| !! | GGGTTTTGGTGAGAAAAATT+GGG | + | chr5.2:72324820-72324839 | None:intergenic | 35.0% |
| !! | GGTTTTGGTGAGAAAAATTG+GGG | + | chr5.2:72324819-72324838 | None:intergenic | 35.0% |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | - | chr5.2:72325315-72325334 | MS.gene98533:CDS | 35.0% |
| !!! | TGTAGTTTTGTGTGTAGTGA+AGG | + | chr5.2:72324993-72325012 | None:intergenic | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | - | chr5.2:72325413-72325432 | MS.gene98533:CDS | 35.0% |
| AAAATCAACATCCCTGACGA+TGG | - | chr5.2:72325075-72325094 | MS.gene98533:CDS | 40.0% | |
| ACATCACCAACCAAAAGCAA+AGG | + | chr5.2:72325426-72325445 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | - | chr5.2:72325973-72325992 | MS.gene98533:CDS | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | - | chr5.2:72326052-72326071 | MS.gene98533:CDS | 40.0% | |
| AGGTTATAGAGCGGTTTGTA+AGG | - | chr5.2:72325872-72325891 | MS.gene98533:CDS | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | - | chr5.2:72326040-72326059 | MS.gene98533:CDS | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | + | chr5.2:72325945-72325964 | None:intergenic | 40.0% | |
| GTAAAATTGTTTCCAGGGAG+AGG | - | chr5.2:72326089-72326108 | MS.gene98533:CDS | 40.0% | |
| GTAAATTGGTGGAGAAAGAG+CGG | + | chr5.2:72324923-72324942 | None:intergenic | 40.0% | |
| TAAATTGGTGGAGAAAGAGC+GGG | + | chr5.2:72324922-72324941 | None:intergenic | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | - | chr5.2:72326112-72326131 | MS.gene98533:CDS | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | - | chr5.2:72326339-72326358 | MS.gene98533:CDS | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | - | chr5.2:72326160-72326179 | MS.gene98533:CDS | 40.0% | |
| ! | AGGAAGCTGTTCTTGTTTCT+AGG | - | chr5.2:72325654-72325673 | MS.gene98533:CDS | 40.0% |
| ! | CTAGGTCGGTTTATTAAGTC+GGG | - | chr5.2:72325672-72325691 | MS.gene98533:CDS | 40.0% |
| ! | GGTGAGAAAAATTGGGGTTT+TGG | + | chr5.2:72324813-72324832 | None:intergenic | 40.0% |
| ! | TATGGAAAACTCTGAGGAGA+TGG | - | chr5.2:72326058-72326077 | MS.gene98533:CDS | 40.0% |
| ! | TGGGTATGGAAATGGAGTTT+TGG | - | chr5.2:72325329-72325348 | MS.gene98533:CDS | 40.0% |
| !! | AGCTGTTCTTGTTTCTAGGT+CGG | - | chr5.2:72325658-72325677 | MS.gene98533:CDS | 40.0% |
| !! | CTAGTTCTAGCACTTATAGC+TGG | - | chr5.2:72325523-72325542 | MS.gene98533:CDS | 40.0% |
| !! | GATCCGAATTTGTTGTTGGA+AGG | - | chr5.2:72325624-72325643 | MS.gene98533:CDS | 40.0% |
| !! | GGGGTTTTGGTGAGAAAAAT+TGG | + | chr5.2:72324821-72324840 | None:intergenic | 40.0% |
| !! | GGGTTTTGGTGCAAGAAATT+GGG | + | chr5.2:72324841-72324860 | None:intergenic | 40.0% |
| !! | GGTGGATTTTGAACAGTTCA+AGG | + | chr5.2:72324893-72324912 | None:intergenic | 40.0% |
| !! | GGTTTTGGTGCAAGAAATTG+GGG | + | chr5.2:72324840-72324859 | None:intergenic | 40.0% |
| !! | TGGGTTTTGGTGCAAGAAAT+TGG | + | chr5.2:72324842-72324861 | None:intergenic | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | - | chr5.2:72325417-72325436 | MS.gene98533:CDS | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | + | chr5.2:72325076-72325095 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | + | chr5.2:72325068-72325087 | None:intergenic | 40.0% |
| AATCCAAACCAGCTTCTACG+AGG | + | chr5.2:72326142-72326161 | None:intergenic | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | - | chr5.2:72326032-72326051 | MS.gene98533:CDS | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | - | chr5.2:72325879-72325898 | MS.gene98533:CDS | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | - | chr5.2:72326444-72326463 | MS.gene98533:CDS | 45.0% | |
| ATCTTCGCCATTCGATTCCT+CGG | + | chr5.2:72325285-72325304 | None:intergenic | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | - | chr5.2:72325972-72325991 | MS.gene98533:CDS | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | - | chr5.2:72326033-72326052 | MS.gene98533:CDS | 45.0% | |
| GCGCGTTTGATGTAAATTGG+TGG | + | chr5.2:72324934-72324953 | None:intergenic | 45.0% | |
| GTGGCGCGTTTGATGTAAAT+TGG | + | chr5.2:72324937-72324956 | None:intergenic | 45.0% | |
| TGGAGAAAGAGCGGGAATTT+GGG | + | chr5.2:72324914-72324933 | None:intergenic | 45.0% | |
| ! | ACGCTGTGCTTGGATTTTTG+TGG | + | chr5.2:72324956-72324975 | None:intergenic | 45.0% |
| ! | GGTGCAAGAAATTGGGGTTT+TGG | + | chr5.2:72324834-72324853 | None:intergenic | 45.0% |
| !!! | AAAATTGGGGTTTTGGGGTG+TGG | + | chr5.2:72324806-72324825 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | + | chr5.2:72324798-72324817 | None:intergenic | 45.0% |
| AGAAAGAGCGGGAATTTGGG+TGG | + | chr5.2:72324911-72324930 | None:intergenic | 50.0% | |
| AGGGAGAGGTGATCAGTTAC+AGG | - | chr5.2:72326103-72326122 | MS.gene98533:CDS | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | + | chr5.2:72325089-72325108 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | + | chr5.2:72324915-72324934 | None:intergenic | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | + | chr5.2:72326449-72326468 | None:intergenic | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | + | chr5.2:72326104-72326123 | None:intergenic | 50.0% | |
| TGTGTTATCATGGGGTTCCG+AGG | - | chr5.2:72325265-72325284 | MS.gene98533:CDS | 50.0% | |
| TGTTGTTGGAAGGTCTAGGG+AGG | - | chr5.2:72325634-72325653 | MS.gene98533:CDS | 50.0% | |
| !! | GGGGGATCCGAATTTGTTGT+TGG | - | chr5.2:72325620-72325639 | MS.gene98533:CDS | 50.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | + | chr5.2:72324799-72324818 | None:intergenic | 50.0% |
| CGAAAAACGTCGCCATCGTC+AGG | + | chr5.2:72325090-72325109 | None:intergenic | 55.0% | |
| CGAATAGAGCACGCTGTGCT+TGG | + | chr5.2:72324966-72324985 | None:intergenic | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | - | chr5.2:72326136-72326155 | MS.gene98533:CDS | 55.0% | |
| TGGGGTTCCGAGGAATCGAA+TGG | - | chr5.2:72325275-72325294 | MS.gene98533:CDS | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | - | chr5.2:72326131-72326150 | MS.gene98533:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72324742 | 72326505 | 72324742 | ID=MS.gene98533 |
| chr5.2 | mRNA | 72324742 | 72326505 | 72324742 | ID=MS.gene98533.t1;Parent=MS.gene98533 |
| chr5.2 | exon | 72324742 | 72326505 | 72324742 | ID=MS.gene98533.t1.exon1;Parent=MS.gene98533.t1 |
| chr5.2 | CDS | 72324742 | 72326505 | 72324742 | ID=cds.MS.gene98533.t1;Parent=MS.gene98533.t1 |
| Gene Sequence |
| Protein sequence |
